reference
stringlengths 7
774
⌀ | aptamer_chemistry
stringclasses 21
values | aptamer_name
stringlengths 1
164
| target_name
stringlengths 2
1.2k
⌀ | aptamer_sequence
stringlengths 2
380
| origin
stringclasses 6
values | target_chemistry
stringclasses 11
values | external_id
stringclasses 509
values | target_sequence
stringclasses 357
values | new_affinity
stringlengths 3
193
⌀ |
|---|---|---|---|---|---|---|---|---|---|
null | null |
10963808-anti DNA antibody-6
|
Anti-DNA Antibody
|
TGCG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
1000000.0
|
null | null |
16940097-HCV subtype 3a-2
|
Hepatitis C virus subtype 3a
|
GGGAGACAAGAATAAACGCTCAATTGGGGTCTGCTCGGGATTGCGGAGAACGTGAATCTTTCGACAGGAGGCTCACAACAGGC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0235
|
9222504.0
| null |
RNA stem loop
|
RNA stem loop
|
GCACGGUGCUGCUGAGAUGCCCGU
|
https://github.com/micheldumontier/aptamerbase
| null | null | null | null |
null | null |
9436913-streptomycin-1
|
Streptomycin
|
GGAGCUCAGCCUUCACUGCUGUAACUCUAGGCUCCCGUGGAUCGCAUUUGGACUUCUGCCUAACGCGUGUGCUAGAGAGCAGGCAAACAAGUGGGCACCACGGUCGGAUCCAC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null | null |
null | null |
9436913-streptomycin-2
|
Streptomycin
|
GGAGCUCAGCCUUCACUGCACCCCUUUGUGGGAACGCAAAACUAAAGGAAGAUCUCAAGAAAGGUGGAUCGCAUUUGGACUUCUGCCCAGGGUGGCACCACGGUCGGAUCCAC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null | null |
12219078.0
| null |
12219078-Streptavidin-1
|
Streptavidin
|
CGGGGGTGCCCGCTGCTCGTCCAAATGACGGCTCAGCTTCGGTGGGCCTTTAACAGTAATCAATCATATGAGCAGTTTTCAACGATCACCTACCCACACCGCTCGAATGTTTGCATAAACCTGGGTAGACTCACGCATAATTGGGTTATTGAGTCTCTTTGATGGACTAACCCGGTTCTATCTCGGAGGTATTTTAGGTC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.08900000000000001
|
12219078.0
| null |
12219078-Streptavidin-2
|
Streptavidin
|
TGACACAAAGACAGACAGGCTATCCAAGAACCCTCTTACTCTGTGAGACGACGCACCGGTCGCAGGTTTTGTCTCACAGACGCTAAAAATACAGACATGCACCAATGAACAATGAGTTCGACCGTGTTCTTGAGTTTTATGGCCGATGTGGTAAGTACTTCTACTGTATCTTCGCGTACCTTAGGTTTAACGTTCTCTTTTTCGGAATGTGCTCGCCCGCGGCATCCGACGTCCCTTTGGGGGGTAGGTGCAACGGGAATCTTGAGGGATCATT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.153
|
12135392.0
| null |
12135392-NFkBRelAp65-1
|
Human Nuclear Factor kB RelA/p65
|
CGGGGTGTTGTCCTGTGCTCTCCGGAGAGCACAGGACAACACCCCG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0048
|
12135392.0
| null |
12135392-NFkBRelAp50-1
|
Human Nuclear Factor kB RelA/p65
|
GGGGTTCCACCTTCACTGGGCGCGCCCAGTGAAGGTGGAACCCC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null | null |
20473891.0
| null |
20473891-HETSR1-1
|
20473891-HETSR1-1
|
GGGAGATACCAGCTTATTCATTCCGCAACCAAGTTTACGGAAATACCGGCTATACGCCCGACGGTTCGAGTAAGTGCAATCT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.037
|
20473891.0
| null |
20473891-HETSR1-2
|
Syrian hamster embryo fibroblasts HETSR1
|
GGGAGATACCAGCTATTCATTCCAGTGACGACGTCGCCCGGTTGTCTAGCCCGCGATTCACGGTTCGAGTAAGTGCAATCT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.049999999999999996
|
20936492.0
| null |
20936492-Pseudomonas aeruginosa-1
|
Pseudomonas aeruginosa
|
CCCCCGTTGCTTTCGCTTTTCCTTTCGCTTTTGTTCGTTTCGTCCCTGCTTCCTTTCTTG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.017269999999999997
|
20936492.0
| null |
20936492-Pseudomonas aeruginosa-2
|
Pseudomonas aeruginosa
|
CCCCAGTGCTCAGCTTCTCCTCCGTCTCATTCTTCTGTAGGATCGTTCTGTTTTGGTACT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.05763
|
21245470.0
| null |
21245470-PA63-2
|
21245470-PA63-2
|
GATGTGGGTGTAGTTGGAGGGTAAACGTT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.12687
|
21204783.0
| null |
21204783-sclerostin-1
|
Sclerostin
|
GTTTCCAAAGCCGGGGGGGTGGGATGGGTT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
1.34
|
21204783.0
| null |
21204783-sclerostin-2
|
Sclerostin
|
TTGCGCGTTAATTGGGGGGGTGGGTGGGTT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.67
|
21204783.0
| null |
21204783-sclerostin-3
|
Sclerostin
|
TGCCTTGTTATTGTGGTGGGCGGGTGGGAC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
2.0700000000000003
|
null | null |
20693539-HIV-1 LTR DNA duplexes-1
|
20693539-HIV-1 LTR DNA duplexes-1
|
GUGGGAAGGUACGACGCCCGCAAGUCUGGCUAACUGGG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
1.2
|
null | null |
19604698-DCF-4
|
Diclofenac
|
ATACCAGCTTATTCAATTGCCAACGTGGCGGTCAGTCAGCGGGTGGTGGGTTCGGTCCAGATAGTAAGTGCAATCT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0427
|
21204783.0
| null |
21204783-sclerostin-4
|
Sclerostin
|
GGGGGGGGTGGGGTGGGTCAATATTCTCGTC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.19999999999999998
|
21245470.0
| null |
21245470-PA63-1
|
21245470-PA63-1
|
CGCACTGAAGTGGGATACCGCCTAAACGG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
38.17
|
null | null |
21245470-PA63-3
|
Anthrax Protective Antigen
|
GGAATAGAGACAAAGCCACTCATATGAGT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0013000000000000002
|
null | null |
21245470-PA63-4
|
Anthrax Protective Antigen
|
CAGACCGTAAGGGATGCCGCCTAAACACC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.13517
|
null | null |
20729797-Sphingosylphosphorylcholine-3
|
Sphingosylphosphorylcholine
|
GGGAAUGGAUCCACAUCUACGAAUUCGCAUUGUCCGCACGCAAAGCAUUA UUGUGAUUCACUGCAGACUUGACGAAGCUU
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.252
|
21290544.0
| null |
21290544-Shp2-1
|
Shp2
|
AGCGTCGAATACCACTACAGGGGGTTTTGGTGGGGGGGGCTGGGTTGTCTTGGGGGTGGGCTAATGGAGCTCGTGGTCAT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.011
|
20967861.0
| null |
20967861-IL17A-1
|
20967861-IL17A-1
|
TAATACGACTCACTATAGGGAAGAGGTCAGATGGTCTAGCCGGAGGAGTCAGTAATCGGTAGACCTATGCGTGCTAGAGTGA
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
4.85e-05
|
21310253.0
| null |
21310253-IL17RA-1
|
interleukin 17 RA
|
CTAAGGATCGGATCCACGGCCTACCAGGTC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0059
|
null | null |
21310253-IL17RA-2
|
interleukin 17 RA
|
CTTGGATCACCATAGTCGCTAGTCGAGGCT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0012
|
null | null |
21310253-IL17RA-3
|
interleukin 17 RA
|
ACGCGCTAGGATCAAAGCTGCACTGAAGTG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0043
|
null | null |
21310253-IL17RA-4
|
interleukin 17 RA
|
CCAGAAGAAGCCCACTAGCGTGCTTTTGTC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0038
|
null | null |
21310253-IL17RA-5
|
interleukin 17 RA
|
CCAGACGTGAGCACTAGATCAGTACGGAAG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.004
|
21504182.0
| null |
21504182-M Type S Pyogenes-1
|
21504182-M Type S Pyogenes-1
|
AGCAGCACAGAGGTCAGATGCACACGCTGAAGAAACTGAGGTCGTAGGTTTTCTTCGGGCCTATGCGTGCTACCGTGAA
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.009
|
null | null |
21504182-M Type S Pyogenes-2
|
21504182-M Type S Pyogenes-2
|
CACACGCTGAAGAAACTGAGGTCGTAGGTTTTCTTCGGG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.013000000000000001
|
null | null |
21504182-M Type S Pyogenes-3
|
21504182-M Type S Pyogenes-3
|
AGCAGCACAGAGGTCAGATGGGGGGAAGACACAGAGAAAGGCCGGGGTGAAGTGTAGAGGCCTATGCGTGCTACCGTGAA
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.009
|
null | null |
21504182-M Type S Pyogenes-4
|
21504182-M Type S Pyogenes-4
|
TTCACGGTAGCACGCATAGGGCCCGACACTCGTCCACCCGATACCTCTCATGTGTCCCCATCTGACCTCTGTGCTGCT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.024999999999999998
|
null | null |
21504182-M Type S Pyogenes-5
|
21504182-M Type S Pyogenes-5
|
AGCAGCACAGAGGTCAGATGGGCATGGGGAAGAGAAAGCGGGATAACTTCGTTACCGGGCCCTATGCGTGCTACCGTGAA
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.017
|
null | null |
21504182-M Type S Pyogenes-6
|
21504182-M Type S Pyogenes-6
|
TTCACGGTAGCACGCATAGGGACAGCAAGCCCAAGCTGGGTGTGCAAGGTGAGGAGTGGGCATCTGACCTCTGTGCTGCT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.01
|
21306108.0
| null |
21306108-Acetamiprid-1
|
Acetamiprid
|
TGTAATTTGTCTGCAGCGGTTCTTGATCGCTGACACCATATTATGAAGA
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
4.9799999999999995
|
21381755.0
| null |
21381755-Polyphosphate Kinase 2-1
|
21381755-Polyphosphate Kinase 2-1
|
AACACATAGGTTTGGTTAGGTTGGTTGGTTGAATTA
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.87
|
21420926.0
| null |
21420926-HIVRT-1
|
Human immunodeficiency virus reverse transcriptase
|
AGGAAGGCTTTAGGTCTGAGATCTCGGAAT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.082
|
null | null |
21420926-HIVRT-2
|
Human immunodeficiency virus reverse transcriptase
|
GGGAAGGCTTTAGGTCTGAGATCTCGGAAT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.102
|
21413891.0
| null |
21413891-Bisphenol A-1
|
Bisphenol A
|
CCGGTGGGTGGTCAGGTGGGATAGCGTTCCGCGTATGGCCCAGCGCATCACGGGTTCGCACCA
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0083
|
21502374.0
| null |
21502374-Nuclear Factor kB-1
|
Human Nuclear Factor kB RelA/p65
|
GGGTAACCTTGAGTCACGAATTCAAGCGGGACAGGAGAAACACGGCATGTCAGCGAAGGTACCCAACTTACAGCTTCT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0006399999999999999
|
21559530.0
| null |
21559530-PTEN-1
|
Phosphatase and Tensin Homologue
|
CGGAATTCCGAGCGTGGGCGTGGTCATACCGCGCCTATCGAACTCGCCACTCGCGTGCAGCTCTGTGTAGGTACGCCCACGCTCGAG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.075
|
null | null |
21559530-PTEN-2
|
Phosphatase and Tensin Homologue
|
CGGAATTCCGAGCGTGGGCGTGAGCCCTAAACACAAGTCCGCAGGGGTGTGGTAATATTCGCAGTTGTGTGTACGCCCACGCTCGAG
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.054
|
21565620.0
| null |
21565620-HPV16E7-1
|
human papillomavirus HPV-16 E7
|
TAATACGACTCACTATAGGGAGACCCAAGCCGATTTATTTTGTGCAGCTTTTGTTCCCTTTAGTGAGGGTTAATT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
1.5999999999999999
|
20967861.0
| null |
21524680-IL17A/F-1
|
21524680-IL17A/F-1
|
GGGCUAGCUGAUCGUACCCAUAGCGUGGGCAUGGGGUGCCUAGUCGGGCGAUACUAACAGCUAACACCC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.0722
|
null | null |
21524680-IL17A/F-2
|
21524680-IL17A/F-1
|
GGGCUAGCUGAUCGUACCAGUAGCGUGGCCUGGGGGGCCUAGUCGUGCGAUACUAACAGCUAACACCC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
1.92
|
21644840.0
| null |
21644840-ErbB2-1
|
ERBB2 Receptor Protein-Tyrosine Kinase
|
AGCCGCGAGGGGAGGGAUAGGGUAGGGCGCGGCU
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.00349
|
21627466.0
| null |
21627466-EColiK88-1
|
21627466-EColiK88-1
|
GGCGACCCCCGGGCTACCAGACAATGTACGCAGCAAGAGTGACGGTCGTACCTCGGAGTC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.044
|
null | null |
21627466-EColiK88-2
|
Escherichia coli K88
|
ACACTCTTTTGCTCGTGTTTTTGCCTGTTACATAAAATGAATCAGTGGATGTTTCCTTCT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.036
|
null | null |
21627466-EColiK88-3
|
Escherichia coli K88
|
GGCGGCCGTGAAATTTGCCAAATGCCGTCTTGGCTTTCGCCCAATGTATCCTGGGTGTTC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.043000000000000003
|
null | null |
21627466-EColiK88-4
|
Escherichia coli K88
|
GGAGACCGTACCATCTGTTCGTGGAAGCGCTTTGCTCGTCCATTAGCCTTGTGCTCGTGC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.024999999999999998
|
21704505.0
| null |
21704505-FADGDH-1
|
flavin adenine dinucleotide-dependent glucose dehydrogenase
|
TCCGGGGGGCTGGGCAGGGGGGTAACTTTC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.032
|
21748194.0
| null |
21748194-Ricin-1
|
Ricin
|
ACACCCACCGCAGGCAGACGCAACGCCTCGGAGACTAGCC
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.005
|
20061133.0
| null |
20061133-CRP-1
|
C-reactive protein
|
GGCAGGAAGACAAACACGATGGGGGGGTATGATTTGATGTGGTTGTTGCATGATCGTGGTCTGTGGTGCTCT
|
https://github.com/micheldumontier/aptamerbase
| null | null | null |
0.00351
|
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