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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/AnnisServiceRunner.java | AnnisServiceRunner.start | public void start(boolean rethrowExceptions) throws Exception
{
log.info("Starting up REST...");
try
{
createWebServer();
if (server == null)
{
isShutdownRequested = true;
errorCode = 100;
}
else
{
server.start();
}
}
catch (Except... | java | public void start(boolean rethrowExceptions) throws Exception
{
log.info("Starting up REST...");
try
{
createWebServer();
if (server == null)
{
isShutdownRequested = true;
errorCode = 100;
}
else
{
server.start();
}
}
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/AnnisServiceRunner.java | AnnisServiceRunner.setTimeout | public void setTimeout(int milliseconds)
{
if(ctx != null)
{
QueryDao dao = (QueryDao) ctx.getBean("queryDao");
if(dao != null)
{
dao.setTimeout(milliseconds);
}
}
} | java | public void setTimeout(int milliseconds)
{
if(ctx != null)
{
QueryDao dao = (QueryDao) ctx.getBean("queryDao");
if(dao != null)
{
dao.setTimeout(milliseconds);
}
}
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korpling/ANNIS | annis-service/src/main/java/annis/utils/ANNISFormatHelper.java | ANNISFormatHelper.corporaInZipfile | public static Map<String, ZipEntry> corporaInZipfile(ZipFile zip) throws IOException
{
Map<String, ZipEntry> result = new HashMap<>();
for(ZipEntry e : getANNISEntry(zip, "corpus"))
{
String name = extractToplevelCorpusNames(zip.getInputStream(e));
result.put(name, e);
}
retu... | java | public static Map<String, ZipEntry> corporaInZipfile(ZipFile zip) throws IOException
{
Map<String, ZipEntry> result = new HashMap<>();
for(ZipEntry e : getANNISEntry(zip, "corpus"))
{
String name = extractToplevelCorpusNames(zip.getInputStream(e));
result.put(name, e);
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korpling/ANNIS | annis-service/src/main/java/annis/utils/ANNISFormatHelper.java | ANNISFormatHelper.extractToplevelCorpusNames | public static String extractToplevelCorpusNames(InputStream corpusTabContent)
{
String result = null;
try(CSVReader csv = new CSVReader(new InputStreamReader(
corpusTabContent, "UTF-8"), '\t'))
{
String[] line;
int maxPost = Integer.MIN_VALUE;
int minPre = Integer.MAX_VAL... | java | public static String extractToplevelCorpusNames(InputStream corpusTabContent)
{
String result = null;
try(CSVReader csv = new CSVReader(new InputStreamReader(
corpusTabContent, "UTF-8"), '\t'))
{
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korpling/ANNIS | annis-service/src/main/java/annis/utils/ANNISFormatHelper.java | ANNISFormatHelper.getANNISEntry | public static List<ZipEntry> getANNISEntry(ZipFile file, String table,
String ... fileEndings)
{
List<ZipEntry> allMatchingEntries = new ArrayList<>();
if (fileEndings == null || fileEndings.length == 0)
{
fileEndings = new String[] {"tab", "annis"};
}
final List<String> fullNa... | java | public static List<ZipEntry> getANNISEntry(ZipFile file, String table,
String ... fileEndings)
{
List<ZipEntry> allMatchingEntries = new ArrayList<>();
if (fileEndings == null || fileEndings.length == 0)
{
fileEndings = new String[] {"tab", "annis"};
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korpling/ANNIS | annis-service/src/main/java/annis/ql/parser/JoinListener.java | JoinListener.join | private void join(ParserRuleContext ctx, Class<? extends Join> type)
{
QueryNode left = relationChain.get(relationIdx);
QueryNode right = relationChain.get(relationIdx+1);
try
{
Constructor<? extends Join> c = type.getConstructor(QueryNode.class);
Join newJoin = c.newInstance(right);
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{
QueryNode left = relationChain.get(relationIdx);
QueryNode right = relationChain.get(relationIdx+1);
try
{
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.analyzeTextTable | private void analyzeTextTable(String toplevelCorpusName)
{
List<String> rawTexts = getQueryDao().getRawText(toplevelCorpusName);
// pattern for checking the token layer
final Pattern WHITESPACE_MATCHER = Pattern.compile("^\\s+$");
for (String s : rawTexts)
{
if (s != null && WHITESPACE_MA... | java | private void analyzeTextTable(String toplevelCorpusName)
{
List<String> rawTexts = getQueryDao().getRawText(toplevelCorpusName);
// pattern for checking the token layer
final Pattern WHITESPACE_MATCHER = Pattern.compile("^\\s+$");
for (String s : rawTexts)
{
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.init | public void init()
{
AnnotationIntrospector introspector = new JaxbAnnotationIntrospector();
jsonMapper.setAnnotationIntrospector(introspector);
// the json should be as compact as possible in the database
jsonMapper.configure(SerializationConfig.Feature.INDENT_OUTPUT,
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} | java | public void init()
{
AnnotationIntrospector introspector = new JaxbAnnotationIntrospector();
jsonMapper.setAnnotationIntrospector(introspector);
// the json should be as compact as possible in the database
jsonMapper.configure(SerializationConfig.Feature.INDENT_OUTPUT,
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.getDatabaseSchemaVersion | @Transactional(readOnly = true, propagation = Propagation.REQUIRED)
public String getDatabaseSchemaVersion()
{
try
{
List<Map<String, Object>> result = getJdbcTemplate().
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String schema... | java | @Transactional(readOnly = true, propagation = Propagation.REQUIRED)
public String getDatabaseSchemaVersion()
{
try
{
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.importCorpus | @Transactional(readOnly = false, propagation = Propagation.REQUIRES_NEW,
isolation = Isolation.READ_COMMITTED)
public boolean importCorpus(String path,
String aliasName,
boolean overwrite,
boolean waitForOtherTasks)
{
// check schema version first
checkDatabaseSchemaVersion();
if (!loc... | java | @Transactional(readOnly = false, propagation = Propagation.REQUIRES_NEW,
isolation = Isolation.READ_COMMITTED)
public boolean importCorpus(String path,
String aliasName,
boolean overwrite,
boolean waitForOtherTasks)
{
// check schema version first
checkDatabaseSchemaVersion();
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.importSingleFile | private void importSingleFile(String file, String toplevelCorpusName,
long corpusRef)
{
BinaryImportHelper preStat = new BinaryImportHelper(file, getRealDataDir(),
toplevelCorpusName,
corpusRef, mimeTypeMapping);
getJdbcTemplate().execute(BinaryImportHelper.SQL, preStat);
} | java | private void importSingleFile(String file, String toplevelCorpusName,
long corpusRef)
{
BinaryImportHelper preStat = new BinaryImportHelper(file, getRealDataDir(),
toplevelCorpusName,
corpusRef, mimeTypeMapping);
getJdbcTemplate().execute(BinaryImportHelper.SQL, preStat);
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.cleanupData | @Transactional(readOnly = true)
public void cleanupData()
{
List<String> allFilesInDatabaseList = getJdbcTemplate().queryForList(
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File dataDir = getRealDataDir();
Set<File> allFilesInDatabase = new HashSet<>();
for (String singleFileNa... | java | @Transactional(readOnly = true)
public void cleanupData()
{
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File dataDir = getRealDataDir();
Set<File> allFilesInDatabase = new HashSet<>();
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.listCorpusStats | public List<Map<String, Object>> listCorpusStats(File databaseProperties)
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List<Map<String, Object>> result = new LinkedList<>();
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getDataSource().setInnerDataSource(createDat... | java | public List<Map<String, Object>> listCorpusStats(File databaseProperties)
{
List<Map<String, Object>> result = new LinkedList<>();
DataSource origDataSource = getDataSource().getInnerDataSource();
try
{
if (databaseProperties != null)
{
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.listCorpusAlias | public Multimap<String, String> listCorpusAlias(File databaseProperties)
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Multimap<String, String> result = TreeMultimap.create();
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try
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if (databaseProperties != null)
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getDataSource().setInnerDataSource(createDa... | java | public Multimap<String, String> listCorpusAlias(File databaseProperties)
{
Multimap<String, String> result = TreeMultimap.create();
DataSource origDataSource = getDataSource().getInnerDataSource();
try
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.bulkloadTableFromResource | private void bulkloadTableFromResource(String table, Resource resource)
{
log.debug("bulk-loading data from '" + resource.getFilename()
+ "' into table '" + table + "'");
String sql = "COPY \"" + table
+ "\" FROM STDIN WITH DELIMITER E'\t' NULL AS 'NULL'";
try
{
// retrieve the curr... | java | private void bulkloadTableFromResource(String table, Resource resource)
{
log.debug("bulk-loading data from '" + resource.getFilename()
+ "' into table '" + table + "'");
String sql = "COPY \"" + table
+ "\" FROM STDIN WITH DELIMITER E'\t' NULL AS 'NULL'";
try
{
// retrieve the curr... | [
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.listIndexesOnTables | private List<String> listIndexesOnTables(List<String> tables)
{
String sql
= ""
+ "SELECT indexname "
+ "FROM pg_indexes "
+ "WHERE tablename IN (" + StringUtils.repeat("?", ",", tables.size())
+ ") "
+ "AND lower(indexname) NOT IN "
+ " (SELECT lower(conname) FROM pg_con... | java | private List<String> listIndexesOnTables(List<String> tables)
{
String sql
= ""
+ "SELECT indexname "
+ "FROM pg_indexes "
+ "WHERE tablename IN (" + StringUtils.repeat("?", ",", tables.size())
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.getTopLevelCorpusFromTmpArea | private String getTopLevelCorpusFromTmpArea()
{
String sql = "SELECT name FROM " + tableInStagingArea("corpus")
+ " WHERE type='CORPUS'\n"
+ "AND pre = (SELECT min(pre) FROM " + tableInStagingArea("corpus")
+ ")\n"
+ "AND post = (SELECT max(post) FROM " + tableInStagingArea("corpus")
... | java | private String getTopLevelCorpusFromTmpArea()
{
String sql = "SELECT name FROM " + tableInStagingArea("corpus")
+ " WHERE type='CORPUS'\n"
+ "AND pre = (SELECT min(pre) FROM " + tableInStagingArea("corpus")
+ ")\n"
+ "AND post = (SELECT max(post) FROM " + tableInStagingArea("corpus")
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.importResolverVisMapTable | private void importResolverVisMapTable(String path, String table, String annisFileSuffix)
{
try
{
// count cols for detecting old resolver_vis_map table format
File resolver_vis_tab = new File(path, table + annisFileSuffix);
if (!resolver_vis_tab.isFile())
{
return;
}
... | java | private void importResolverVisMapTable(String path, String table, String annisFileSuffix)
{
try
{
// count cols for detecting old resolver_vis_map table format
File resolver_vis_tab = new File(path, table + annisFileSuffix);
if (!resolver_vis_tab.isFile())
{
return;
}
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.fixResolverVisMapTable | private void fixResolverVisMapTable(String toplevelCorpus, String table)
{
log.info("checking resolver_vis_map for errors");
// delete all entries that reference a different corpus than the imported one
int invalidRows = getJdbcTemplate().update("DELETE FROM " + table
+ " WHERE corpus <> ?", toplev... | java | private void fixResolverVisMapTable(String toplevelCorpus, String table)
{
log.info("checking resolver_vis_map for errors");
// delete all entries that reference a different corpus than the imported one
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.analyzeAutoGeneratedQueries | private void analyzeAutoGeneratedQueries(long corpusID)
{
// read the example queries from the staging area
List<ExampleQuery> exampleQueries = getJdbcTemplate().query(
"SELECT * FROM _" + EXAMPLE_QUERIES_TAB, new RowMapper<ExampleQuery>()
{
@Override
public ExampleQuery mapRow(Res... | java | private void analyzeAutoGeneratedQueries(long corpusID)
{
// read the example queries from the staging area
List<ExampleQuery> exampleQueries = getJdbcTemplate().query(
"SELECT * FROM _" + EXAMPLE_QUERIES_TAB, new RowMapper<ExampleQuery>()
{
@Override
public ExampleQuery mapRow(Res... | [
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.countExampleQueryNodes | private void countExampleQueryNodes(List<ExampleQuery> exampleQueries)
{
for (ExampleQuery eQ : exampleQueries)
{
QueryData query = getQueryDao().parseAQL(eQ.getExampleQuery(), null);
int count = 0;
for (List<QueryNode> qNodes : query.getAlternatives())
{
count += qNodes.siz... | java | private void countExampleQueryNodes(List<ExampleQuery> exampleQueries)
{
for (ExampleQuery eQ : exampleQueries)
{
QueryData query = getQueryDao().parseAQL(eQ.getExampleQuery(), null);
int count = 0;
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{
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.writeAmountOfNodesBack | private void writeAmountOfNodesBack(List<ExampleQuery> exampleQueries)
{
String sqlTemplate = "UPDATE _" + EXAMPLE_QUERIES_TAB + " SET nodes=?, used_ops=CAST(? AS text[]) WHERE example_query=?;";
for (ExampleQuery eQ : exampleQueries)
{
getJdbcTemplate().update(sqlTemplate, eQ.getNodes(), eQ.g... | java | private void writeAmountOfNodesBack(List<ExampleQuery> exampleQueries)
{
String sqlTemplate = "UPDATE _" + EXAMPLE_QUERIES_TAB + " SET nodes=?, used_ops=CAST(? AS text[]) WHERE example_query=?;";
for (ExampleQuery eQ : exampleQueries)
{
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korpling/ANNIS | annis-service/src/main/java/annis/administration/AdministrationDao.java | AdministrationDao.checkTopLevelCorpus | private void checkTopLevelCorpus() throws ConflictingCorpusException
{
String corpusName = getTopLevelCorpusFromTmpArea();
if (existConflictingTopLevelCorpus(corpusName))
{
String msg
= "There already exists a top level corpus with the name: " + corpusName;
throw new ConflictingCorpusE... | java | private void checkTopLevelCorpus() throws ConflictingCorpusException
{
String corpusName = getTopLevelCorpusFromTmpArea();
if (existConflictingTopLevelCorpus(corpusName))
{
String msg
= "There already exists a top level corpus with the name: " + corpusName;
throw new ConflictingCorpusE... | [
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@throws
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korpling/ANNIS | annis-service/src/main/java/annis/AnnisRunner.java | AnnisRunner.doClearExampleQueries | public void doClearExampleQueries(String unused)
{
for (Long corpusId : corpusList)
{
System.out.println("delete example queries for " + corpusId);
queriesGenerator.delExampleQueries(corpusId);
}
} | java | public void doClearExampleQueries(String unused)
{
for (Long corpusId : corpusList)
{
System.out.println("delete example queries for " + corpusId);
queriesGenerator.delExampleQueries(corpusId);
}
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korpling/ANNIS | annis-service/src/main/java/annis/AnnisRunner.java | AnnisRunner.doGenerateExampleQueries | public void doGenerateExampleQueries(String args)
{
Boolean del = false;
if (args != null && "overwrite".equals(args))
{
del = true;
}
if (corpusList != null)
{
for (Long corpusId : corpusList)
{
System.out.println("generate example queries " + corpusId);
que... | java | public void doGenerateExampleQueries(String args)
{
Boolean del = false;
if (args != null && "overwrite".equals(args))
{
del = true;
}
if (corpusList != null)
{
for (Long corpusId : corpusList)
{
System.out.println("generate example queries " + corpusId);
que... | [
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korpling/ANNIS | annis-service/src/main/java/annis/AnnisRunner.java | AnnisRunner.analyzeQuery | private QueryData analyzeQuery(String annisQuery, String queryFunction)
{
QueryData queryData;
log.debug("analyze query for " + queryFunction + " function");
if (queryFunction != null && !queryFunction.matches("(sql_)?subgraph"))
{
queryData = queryDao.parseAQL(annisQuery, corpusList);
}
... | java | private QueryData analyzeQuery(String annisQuery, String queryFunction)
{
QueryData queryData;
log.debug("analyze query for " + queryFunction + " function");
if (queryFunction != null && !queryFunction.matches("(sql_)?subgraph"))
{
queryData = queryDao.parseAQL(annisQuery, corpusList);
}
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korpling/ANNIS | annis-service/src/main/java/annis/utils/Utils.java | Utils.calculateSHAHash | public static String calculateSHAHash(String s) throws
NoSuchAlgorithmException, UnsupportedEncodingException
{
MessageDigest md = MessageDigest.getInstance("SHA-256");
md.update(s.getBytes("UTF-8"));
byte[] digest = md.digest();
StringBuilder hashVal = new StringBuilder();
for (byte b : dige... | java | public static String calculateSHAHash(String s) throws
NoSuchAlgorithmException, UnsupportedEncodingException
{
MessageDigest md = MessageDigest.getInstance("SHA-256");
md.update(s.getBytes("UTF-8"));
byte[] digest = md.digest();
StringBuilder hashVal = new StringBuilder();
for (byte b : dige... | [
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korpling/ANNIS | annis-visualizers/src/main/java/annis/visualizers/component/visjs/VisJsComponent.java | VisJsComponent.setHighlightingColor | @Override
public String setHighlightingColor(SNode node) {
String color = null;
SFeature featMatched = node.getFeature(ANNIS_NS, FEAT_MATCHEDNODE);
Long matchRaw = featMatched == null ? null : featMatched.getValue_SNUMERIC();
// token is matched
if (matchRaw != null)
... | java | @Override
public String setHighlightingColor(SNode node) {
String color = null;
SFeature featMatched = node.getFeature(ANNIS_NS, FEAT_MATCHEDNODE);
Long matchRaw = featMatched == null ? null : featMatched.getValue_SNUMERIC();
// token is matched
if (matchRaw != null)
... | [
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korpling/ANNIS | annis-libgui/src/main/java/annis/libgui/AnnisBaseUI.java | AnnisBaseUI.injectUniqueCSS | public void injectUniqueCSS(String cssContent, String wrapperClass)
{
if(alreadyAddedCSS == null)
{
alreadyAddedCSS = new TreeSet<String>();
}
if(wrapperClass != null)
{
cssContent = wrapCSS(cssContent, wrapperClass);
}
String hashForCssContent = Hashing.md5().hashSt... | java | public void injectUniqueCSS(String cssContent, String wrapperClass)
{
if(alreadyAddedCSS == null)
{
alreadyAddedCSS = new TreeSet<String>();
}
if(wrapperClass != null)
{
cssContent = wrapCSS(cssContent, wrapperClass);
}
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/QueryServiceImpl.java | QueryServiceImpl.frequency | @GET
@Path("search/frequency")
@Produces("application/xml")
public FrequencyTable frequency(
@QueryParam("q") String query,
@QueryParam("corpora") String rawCorpusNames,
@QueryParam("fields") String rawFields)
{
requiredParameter(query, "q", "AnnisQL query");
requiredParameter(rawCorpusNames... | java | @GET
@Path("search/frequency")
@Produces("application/xml")
public FrequencyTable frequency(
@QueryParam("q") String query,
@QueryParam("corpora") String rawCorpusNames,
@QueryParam("fields") String rawFields)
{
requiredParameter(query, "q", "AnnisQL query");
requiredParameter(rawCorpusNames... | [
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@param rawFields Comma seperated list of result vector elements.
Each element has the form <node-nr>:<anno-name>. The
annotation name can be set to "tok" to indicate that the
span should be used instead of an annotation. | [
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] | 152a2e34832e015f73ac8ce8a7d4c32641641324 | https://github.com/korpling/ANNIS/blob/152a2e34832e015f73ac8ce8a7d4c32641641324/annis-service/src/main/java/annis/service/internal/QueryServiceImpl.java#L336-L365 | train |
korpling/ANNIS | annis-service/src/main/java/annis/service/internal/QueryServiceImpl.java | QueryServiceImpl.check | @GET
@Produces("text/plain")
@Path("check")
public String check(@QueryParam("q") String query,
@DefaultValue("") @QueryParam("corpora") String rawCorpusNames)
{
Subject user = SecurityUtils.getSubject();
List<String> corpusNames = splitCorpusNamesFromRaw(rawCorpusNames);
for (String c : corpusN... | java | @GET
@Produces("text/plain")
@Path("check")
public String check(@QueryParam("q") String query,
@DefaultValue("") @QueryParam("corpora") String rawCorpusNames)
{
Subject user = SecurityUtils.getSubject();
List<String> corpusNames = splitCorpusNamesFromRaw(rawCorpusNames);
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@param query Query to check for validity
@param rawCorpusNames
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/QueryServiceImpl.java | QueryServiceImpl.parseNodes | @GET
@Path("parse/nodes")
@Produces("application/xml")
public Response parseNodes(@QueryParam("q") String query,
@DefaultValue("") @QueryParam("corpora") String rawCorpusNames)
{
Subject user = SecurityUtils.getSubject();
List<String> corpusNames = splitCorpusNamesFromRaw(rawCorpusNames);
for (S... | java | @GET
@Path("parse/nodes")
@Produces("application/xml")
public Response parseNodes(@QueryParam("q") String query,
@DefaultValue("") @QueryParam("corpora") String rawCorpusNames)
{
Subject user = SecurityUtils.getSubject();
List<String> corpusNames = splitCorpusNamesFromRaw(rawCorpusNames);
for (S... | [
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/QueryServiceImpl.java | QueryServiceImpl.getExampleQueries | @GET
@Path("corpora/example-queries/")
@Produces(MediaType.APPLICATION_XML)
public List<ExampleQuery> getExampleQueries(
@QueryParam("corpora") String rawCorpusNames) throws WebApplicationException
{
Subject user = SecurityUtils.getSubject();
try
{
String[] corpusNames;
if (r... | java | @GET
@Path("corpora/example-queries/")
@Produces(MediaType.APPLICATION_XML)
public List<ExampleQuery> getExampleQueries(
@QueryParam("corpora") String rawCorpusNames) throws WebApplicationException
{
Subject user = SecurityUtils.getSubject();
try
{
String[] corpusNames;
if (r... | [
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/QueryServiceImpl.java | QueryServiceImpl.requiredParameter | private void requiredParameter(String value, String name, String description)
throws WebApplicationException
{
if (value == null)
{
throw new WebApplicationException(
Response.status(Response.Status.BAD_REQUEST).type(
MediaType.TEXT_PLAIN).entity(
"missing required parameter ... | java | private void requiredParameter(String value, String name, String description)
throws WebApplicationException
{
if (value == null)
{
throw new WebApplicationException(
Response.status(Response.Status.BAD_REQUEST).type(
MediaType.TEXT_PLAIN).entity(
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/QueryServiceImpl.java | QueryServiceImpl.splitCorpusNamesFromRaw | private List<String> splitCorpusNamesFromRaw(String rawCorpusNames)
{
return new ArrayList<>(Splitter.on(",").omitEmptyStrings().trimResults().splitToList(rawCorpusNames));
} | java | private List<String> splitCorpusNamesFromRaw(String rawCorpusNames)
{
return new ArrayList<>(Splitter.on(",").omitEmptyStrings().trimResults().splitToList(rawCorpusNames));
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/QueryServiceImpl.java | QueryServiceImpl.getCorpusConfigIntValues | private int getCorpusConfigIntValues(String context)
{
int value = Integer.parseInt(defaultCorpusConfig.getConfig().getProperty(
context));
if (value < 0)
{
throw new IllegalStateException("the value must be > 0");
}
return value;
} | java | private int getCorpusConfigIntValues(String context)
{
int value = Integer.parseInt(defaultCorpusConfig.getConfig().getProperty(
context));
if (value < 0)
{
throw new IllegalStateException("the value must be > 0");
}
return value;
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/QueryServiceImpl.java | QueryServiceImpl.getRawText | @GET
@Path("rawtext/{top}/{docname}")
@Produces(MediaType.APPLICATION_XML)
public RawTextWrapper getRawText(@PathParam("top") String top,
@PathParam("docname") String docname)
{
Subject user = SecurityUtils.getSubject();
user.checkPermission("query:raw_text:" + top);
RawTextWrapper result = new... | java | @GET
@Path("rawtext/{top}/{docname}")
@Produces(MediaType.APPLICATION_XML)
public RawTextWrapper getRawText(@PathParam("top") String top,
@PathParam("docname") String docname)
{
Subject user = SecurityUtils.getSubject();
user.checkPermission("query:raw_text:" + top);
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/MetaDataPanel.java | MetaDataPanel.splitListAnnotations | private Map<Integer, List<Annotation>> splitListAnnotations()
{
List<Annotation> metadata = Helper.getMetaData(toplevelCorpusName,
documentName);
Map<Integer, List<Annotation>> hashMetaData = new HashMap<>();
if (metadata != null && !metadata.isEmpty())
{
// if called from corpus browse... | java | private Map<Integer, List<Annotation>> splitListAnnotations()
{
List<Annotation> metadata = Helper.getMetaData(toplevelCorpusName,
documentName);
Map<Integer, List<Annotation>> hashMetaData = new HashMap<>();
if (metadata != null && !metadata.isEmpty())
{
// if called from corpus browse... | [
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/MetaDataPanel.java | MetaDataPanel.addEmptyLabel | private void addEmptyLabel()
{
if (emptyLabel == null)
{
emptyLabel = new Label("none");
}
if (corpusAnnotationTable != null)
{
layout.removeComponent(corpusAnnotationTable);
}
layout.addComponent(emptyLabel);
// this has only an effect after adding the component to a pa... | java | private void addEmptyLabel()
{
if (emptyLabel == null)
{
emptyLabel = new Label("none");
}
if (corpusAnnotationTable != null)
{
layout.removeComponent(corpusAnnotationTable);
}
layout.addComponent(emptyLabel);
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/docbrowser/DocBrowserTable.java | DocBrowserTable.setDocNames | void setDocNames(List<Annotation> docs)
{
container = new IndexedContainer();
container.addContainerProperty(PROP_DOC_NAME, String.class, "n/a");
MetaColumns metaCols = generateMetaColumns();
for (MetaDataCol metaDatum : metaCols.visibleColumns)
{
container.
addContainerProperty(m... | java | void setDocNames(List<Annotation> docs)
{
container = new IndexedContainer();
container.addContainerProperty(PROP_DOC_NAME, String.class, "n/a");
MetaColumns metaCols = generateMetaColumns();
for (MetaDataCol metaDatum : metaCols.visibleColumns)
{
container.
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/docbrowser/DocBrowserTable.java | DocBrowserTable.sortByMetaData | private void sortByMetaData(List<MetaDataCol> sortColumns)
{
if (sortColumns == null || sortColumns.isEmpty())
{
sort(new Object[]
{
PROP_DOC_NAME
}, new boolean[]
{
true
});
return;
}
Object[] sortByColumns = new Object[sortColumns.size()];
bo... | java | private void sortByMetaData(List<MetaDataCol> sortColumns)
{
if (sortColumns == null || sortColumns.isEmpty())
{
sort(new Object[]
{
PROP_DOC_NAME
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true
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return;
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Object[] sortByColumns = new Object[sortColumns.size()];
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/docbrowser/DocBrowserTable.java | DocBrowserTable.getDocMetaData | private List<Annotation> getDocMetaData(String document)
{
// lookup up meta data in the cache
if (!docMetaDataCache.containsKey(docBrowserPanel.getCorpus()))
{
// get the metadata for the corpus
WebResource res = Helper.getAnnisWebResource();
res = res.path("meta/corpus/").path(
... | java | private List<Annotation> getDocMetaData(String document)
{
// lookup up meta data in the cache
if (!docMetaDataCache.containsKey(docBrowserPanel.getCorpus()))
{
// get the metadata for the corpus
WebResource res = Helper.getAnnisWebResource();
res = res.path("meta/corpus/").path(
... | [
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korpling/ANNIS | annis-widgets/src/main/java/annis/gui/widgets/grid/Row.java | Row.addEvent | public boolean addEvent(GridEvent e)
{
BitSet eventOccupance = new BitSet(e.getRight());
eventOccupance.set(e.getLeft(), e.getRight()+1, true);
if(occupancySet.intersects(eventOccupance))
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return false;
}
// set all bits to true that are covered by the other event
occupancySet.or(ev... | java | public boolean addEvent(GridEvent e)
{
BitSet eventOccupance = new BitSet(e.getRight());
eventOccupance.set(e.getLeft(), e.getRight()+1, true);
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/SearchView.java | SearchView.updateFragment | public void updateFragment(DisplayedResultQuery q)
{
List<String> args = Helper.citationFragment(q.getQuery(), q.getCorpora(),
q.getLeftContext(), q.getRightContext(),
q.getSegmentation(), q.getBaseText(), q.getOffset(), q.getLimit(), q.getOrder(),
q.getSelectedMatches());
// set our fragme... | java | public void updateFragment(DisplayedResultQuery q)
{
List<String> args = Helper.citationFragment(q.getQuery(), q.getCorpora(),
q.getLeftContext(), q.getRightContext(),
q.getSegmentation(), q.getBaseText(), q.getOffset(), q.getLimit(), q.getOrder(),
q.getSelectedMatches());
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/SearchView.java | SearchView.updateFragementWithSelectedCorpus | public void updateFragementWithSelectedCorpus(Set<String> corpora)
{
if (corpora != null && !corpora.isEmpty())
{
String fragment = "_c=" + Helper.encodeBase64URL(StringUtils.
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UI.getCurrent().getPage().setUriFragment(fragment);
}
else
{
UI.getCurrent(... | java | public void updateFragementWithSelectedCorpus(Set<String> corpora)
{
if (corpora != null && !corpora.isEmpty())
{
String fragment = "_c=" + Helper.encodeBase64URL(StringUtils.
join(corpora, ","));
UI.getCurrent().getPage().setUriFragment(fragment);
}
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korpling/ANNIS | annis-service/src/main/java/annis/sqlgen/ResultSetTypedIterator.java | ResultSetTypedIterator.reset | public void reset()
{
try
{
if(rs.getType() == ResultSet.TYPE_FORWARD_ONLY)
{
throw new UnsupportedOperationException("Can not reset iterator for a ResultSet that is of type \"forward only\"");
}
hasNext = rs.first();
}
catch (SQLException ex)
{
log.error(null... | java | public void reset()
{
try
{
if(rs.getType() == ResultSet.TYPE_FORWARD_ONLY)
{
throw new UnsupportedOperationException("Can not reset iterator for a ResultSet that is of type \"forward only\"");
}
hasNext = rs.first();
}
catch (SQLException ex)
{
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/frequency/UserGeneratedFrequencyEntry.java | UserGeneratedFrequencyEntry.toFrequencyTableEntry | public FrequencyTableEntry toFrequencyTableEntry()
{
FrequencyTableEntry result = new FrequencyTableEntry();
result.setReferencedNode(nr);
if (annotation != null && "tok".equals(annotation))
{
result.setType(FrequencyTableEntryType.span);
}
else
{
result.setType(Frequ... | java | public FrequencyTableEntry toFrequencyTableEntry()
{
FrequencyTableEntry result = new FrequencyTableEntry();
result.setReferencedNode(nr);
if (annotation != null && "tok".equals(annotation))
{
result.setType(FrequencyTableEntryType.span);
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korpling/ANNIS | annis-service/src/main/java/annis/rest/provider/SQLExceptionMapper.java | SQLExceptionMapper.map | public static Response map(SQLException sqlEx)
{
if (null != sqlEx.getSQLState())
{
switch (sqlEx.getSQLState())
{
//query_canceled
case "57014":
return Response.status(504).entity(sqlEx.getMessage()).build();
case "2201B":
// regular expression did not ... | java | public static Response map(SQLException sqlEx)
{
if (null != sqlEx.getSQLState())
{
switch (sqlEx.getSQLState())
{
//query_canceled
case "57014":
return Response.status(504).entity(sqlEx.getMessage()).build();
case "2201B":
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/exporter/SaltBasedExporter.java | SaltBasedExporter.convertSaltProject | private void convertSaltProject(SaltProject p, List<String> annoKeys, Map<String, String> args, boolean alignmc, int offset,
Map<String, CorpusConfig> corpusConfigs, Writer out, Integer nodeCount) throws IOException, IllegalArgumentException
{
int recordNumber = offset;
if(p != null && p.getCorpusGraphs... | java | private void convertSaltProject(SaltProject p, List<String> annoKeys, Map<String, String> args, boolean alignmc, int offset,
Map<String, CorpusConfig> corpusConfigs, Writer out, Integer nodeCount) throws IOException, IllegalArgumentException
{
int recordNumber = offset;
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/QueryController.java | QueryController.reportServiceException | public void reportServiceException(UniformInterfaceException ex,
boolean showNotification)
{
QueryPanel qp = searchView.getControlPanel().getQueryPanel();
String caption = null;
String description = null;
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{
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boolean showNotification)
{
QueryPanel qp = searchView.getControlPanel().getQueryPanel();
String caption = null;
String description = null;
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/QueryController.java | QueryController.setIfNew | private static <T> void setIfNew(Property<T> prop, T newValue)
{
if(!Objects.equals(prop.getValue(), newValue))
{
prop.setValue(newValue);
}
} | java | private static <T> void setIfNew(Property<T> prop, T newValue)
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prop.setValue(newValue);
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/QueryController.java | QueryController.getExportQuery | public ExportQuery getExportQuery()
{
return QueryGenerator.export()
.query(state.getAql().getValue())
.corpora(state.getSelectedCorpora().getValue())
.left(state.getLeftContext().getValue())
.right(state.getRightContext().getValue())
.segmentation(state.getVisibleBaseText().getValue... | java | public ExportQuery getExportQuery()
{
return QueryGenerator.export()
.query(state.getAql().getValue())
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.left(state.getLeftContext().getValue())
.right(state.getRightContext().getValue())
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/QueryController.java | QueryController.cancelSearch | private void cancelSearch()
{
// don't spin forever when canceled
searchView.getControlPanel().getQueryPanel().setCountIndicatorEnabled(false);
Map<QueryUIState.QueryType, Future<?>> exec = state.getExecutedTasks();
// abort last tasks if running
if (exec.containsKey(QueryUIState.QueryType.COUNT)... | java | private void cancelSearch()
{
// don't spin forever when canceled
searchView.getControlPanel().getQueryPanel().setCountIndicatorEnabled(false);
Map<QueryUIState.QueryType, Future<?>> exec = state.getExecutedTasks();
// abort last tasks if running
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/QueryController.java | QueryController.addHistoryEntry | public void addHistoryEntry(Query q)
{
try
{
Query queryCopy = q.clone();
// remove it first in order to let it appear on the beginning of the list
state.getHistory().removeItem(queryCopy);
state.getHistory().addItemAt(0, queryCopy);
searchView.getControlPanel().getQueryPanel().u... | java | public void addHistoryEntry(Query q)
{
try
{
Query queryCopy = q.clone();
// remove it first in order to let it appear on the beginning of the list
state.getHistory().removeItem(queryCopy);
state.getHistory().addItemAt(0, queryCopy);
searchView.getControlPanel().getQueryPanel().u... | [
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korpling/ANNIS | annis-visualizers/src/main/java/annis/visualizers/iframe/CorefVisualizer.java | CorefVisualizer.setReferent | private void setReferent(SNode n, long index, int value)
{
if (n instanceof SToken)
{
SToken tok = (SToken) n;
if (!referentOfToken.containsKey(tok.getId()))
{
HashMap<Long, Integer> newlist = new HashMap<Long, Integer>();
newlist.put(index, value);//globalindex?
refe... | java | private void setReferent(SNode n, long index, int value)
{
if (n instanceof SToken)
{
SToken tok = (SToken) n;
if (!referentOfToken.containsKey(tok.getId()))
{
HashMap<Long, Integer> newlist = new HashMap<Long, Integer>();
newlist.put(index, value);//globalindex?
refe... | [
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@param n the Node
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korpling/ANNIS | annis-visualizers/src/main/java/annis/visualizers/iframe/CorefVisualizer.java | CorefVisualizer.searchTokens | private List<String> searchTokens(SNode n, long cnr)
{
List<String> result = new LinkedList<String>();
if (n instanceof SToken)
{
result.add(n.getId());
if (componentOfToken.get(n.getId()) == null)
{
List<Long> newlist = new LinkedList<Long>();
newlist.add(cnr);
c... | java | private List<String> searchTokens(SNode n, long cnr)
{
List<String> result = new LinkedList<String>();
if (n instanceof SToken)
{
result.add(n.getId());
if (componentOfToken.get(n.getId()) == null)
{
List<Long> newlist = new LinkedList<Long>();
newlist.add(cnr);
c... | [
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korpling/ANNIS | annis-visualizers/src/main/java/annis/visualizers/iframe/CorefVisualizer.java | CorefVisualizer.getAnnotations | private String getAnnotations(String id, long component)
{
String result = "";
String incoming = "", outgoing = "";
int nri = 1, nro = 1;
if(referentOfToken.get(id) != null)
{
for (long l : referentOfToken.get(id).keySet())
{
if (referentList.get((int) l) != null && referentLi... | java | private String getAnnotations(String id, long component)
{
String result = "";
String incoming = "", outgoing = "";
int nri = 1, nro = 1;
if(referentOfToken.get(id) != null)
{
for (long l : referentOfToken.get(id).keySet())
{
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korpling/ANNIS | annis-visualizers/src/main/java/annis/visualizers/iframe/CorefVisualizer.java | CorefVisualizer.connectionOf | private boolean connectionOf(String pre, String now, long currentComponent)
{
List<Long> prel = new LinkedList<Long>(), nowl = new LinkedList<Long>();
if (!pre.equals(now) && referentOfToken.get(pre) != null && referentOfToken.get(now) != null)
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for (long l : referentOfToken.get(pre).keySet())
... | java | private boolean connectionOf(String pre, String now, long currentComponent)
{
List<Long> prel = new LinkedList<Long>(), nowl = new LinkedList<Long>();
if (!pre.equals(now) && referentOfToken.get(pre) != null && referentOfToken.get(now) != null)
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korpling/ANNIS | annis-visualizers/src/main/java/annis/visualizers/iframe/CorefVisualizer.java | CorefVisualizer.getNewColor | private int getNewColor(int i)
{
int r = (((i) * 224) % 255);
int g = (((i + 197) * 1034345) % 255);
int b = (((i + 23) * 74353) % 255);
// too dark or too bright?
if (((r + b + g) / 3) < 100)
{
r = 255 - r;
g = 255 - g;
b = 255 - b;
}
else if (((r + b + g) / 3) > 1... | java | private int getNewColor(int i)
{
int r = (((i) * 224) % 255);
int g = (((i + 197) * 1034345) % 255);
int b = (((i + 23) * 74353) % 255);
// too dark or too bright?
if (((r + b + g) / 3) < 100)
{
r = 255 - r;
g = 255 - g;
b = 255 - b;
}
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/URLShortenerImpl.java | URLShortenerImpl.addNewID | @POST
@Produces(value = "text/plain")
public String addNewID(String str)
{
Subject user = SecurityUtils.getSubject();
String remoteIP = request.getRemoteAddr().replaceAll("[.:]", "_");
user.checkPermission("shortener:create:" + remoteIP);
return shortenerDao.shorten(str, "" + user.getPri... | java | @POST
@Produces(value = "text/plain")
public String addNewID(String str)
{
Subject user = SecurityUtils.getSubject();
String remoteIP = request.getRemoteAddr().replaceAll("[.:]", "_");
user.checkPermission("shortener:create:" + remoteIP);
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korpling/ANNIS | annis-libgui/src/main/java/annis/libgui/visualizers/VisualizerInput.java | VisualizerInput.getMarkedAndCovered | public Map<SNode, Long> getMarkedAndCovered()
{
if(cachedMarkedAndCoveredNodes == null)
{
if (document != null)
{
cachedMarkedAndCoveredNodes = CommonHelper.createSNodeMapFromIDs(
markedAndCovered, document.getDocumentGraph());
}
}
return cachedMarkedAndC... | java | public Map<SNode, Long> getMarkedAndCovered()
{
if(cachedMarkedAndCoveredNodes == null)
{
if (document != null)
{
cachedMarkedAndCoveredNodes = CommonHelper.createSNodeMapFromIDs(
markedAndCovered, document.getDocumentGraph());
}
}
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/exporter/TextColumnExporter.java | TextColumnExporter.calculateOrderedMatchNumbersGlobally | private List<Long> calculateOrderedMatchNumbersGlobally(int[][] adjacencyMatrix, boolean matrixIsFilled,
Set<Long> singleMatches) {
List<Long> orderedMatchNumbers = new ArrayList<Long>();
if (matrixIsFilled) {
int first = -1;
int second = -1;
// iterate over columns and get the pairs of match numbers... | java | private List<Long> calculateOrderedMatchNumbersGlobally(int[][] adjacencyMatrix, boolean matrixIsFilled,
Set<Long> singleMatches) {
List<Long> orderedMatchNumbers = new ArrayList<Long>();
if (matrixIsFilled) {
int first = -1;
int second = -1;
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korpling/ANNIS | annis-libgui/src/main/java/annis/libgui/Background.java | Background.runWithCallback | public static <T> void runWithCallback(Callable<T> job, final FutureCallback<T> callback)
{
final UI ui = UI.getCurrent();
ListeningExecutorService exec = MoreExecutors.listeningDecorator(Executors.newSingleThreadExecutor());
ListenableFuture<T> future = exec.submit(job);
if(callback != null)
... | java | public static <T> void runWithCallback(Callable<T> job, final FutureCallback<T> callback)
{
final UI ui = UI.getCurrent();
ListeningExecutorService exec = MoreExecutors.listeningDecorator(Executors.newSingleThreadExecutor());
ListenableFuture<T> future = exec.submit(job);
if(callback != null)
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korpling/ANNIS | annis-service/src/main/java/annis/dao/autogenqueries/QueriesGenerator.java | QueriesGenerator.delExampleQueries | public void delExampleQueries(List<String> corpusNames)
{
if (corpusNames == null || corpusNames.isEmpty())
{
log.info("delete all example queries");
jdbcTemplate.execute("TRUNCATE example_queries");
}
else
{
List<Long> ids = queryDao.mapCorpusNamesToIds(corpusNames);
for ... | java | public void delExampleQueries(List<String> corpusNames)
{
if (corpusNames == null || corpusNames.isEmpty())
{
log.info("delete all example queries");
jdbcTemplate.execute("TRUNCATE example_queries");
}
else
{
List<Long> ids = queryDao.mapCorpusNamesToIds(corpusNames);
for ... | [
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korpling/ANNIS | annis-service/src/main/java/annis/dao/autogenqueries/QueriesGenerator.java | QueriesGenerator.generateQueries | public void generateQueries(Boolean overwrite)
{
List<AnnisCorpus> corpora = queryDao.listCorpora();
for (AnnisCorpus annisCorpus : corpora)
{
generateQueries(annisCorpus.getId(), overwrite);
}
} | java | public void generateQueries(Boolean overwrite)
{
List<AnnisCorpus> corpora = queryDao.listCorpora();
for (AnnisCorpus annisCorpus : corpora)
{
generateQueries(annisCorpus.getId(), overwrite);
}
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korpling/ANNIS | annis-service/src/main/java/annis/sqlgen/FindSqlGenerator.java | FindSqlGenerator.buildSaltId | private URI buildSaltId(List<String> path, String saltID)
{
StringBuilder sb = new StringBuilder("salt:/");
Iterator<String> itPath = path.iterator();
while(itPath.hasNext())
{
String dir = itPath.next();
sb.append(pathEscaper.escape(dir));
if(itPath.hasNext())
{
sb.ap... | java | private URI buildSaltId(List<String> path, String saltID)
{
StringBuilder sb = new StringBuilder("salt:/");
Iterator<String> itPath = path.iterator();
while(itPath.hasNext())
{
String dir = itPath.next();
sb.append(pathEscaper.escape(dir));
if(itPath.hasNext())
{
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korpling/ANNIS | annis-interfaces/src/main/java/annis/VersionInfo.java | VersionInfo.getVersion | public static String getVersion()
{
String rev = getBuildRevision();
Date date = getBuildDate();
StringBuilder result = new StringBuilder();
result.append(getReleaseName());
if (!"".equals(rev) || date != null)
{
result.append(" (");
boolean added = false;
if (!"".equals(re... | java | public static String getVersion()
{
String rev = getBuildRevision();
Date date = getBuildDate();
StringBuilder result = new StringBuilder();
result.append(getReleaseName());
if (!"".equals(rev) || date != null)
{
result.append(" (");
boolean added = false;
if (!"".equals(re... | [
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korpling/ANNIS | annis-interfaces/src/main/java/annis/VersionInfo.java | VersionInfo.getBuildDate | public static Date getBuildDate()
{
Date result = null;
try
{
DateFormat format = new SimpleDateFormat("yyyy-MM-dd_HH-mm-ss");
String raw = versionProperties.getProperty("build_date");
if(raw != null)
{
result = format.parse(raw);
}
}
catch (ParseException ex)... | java | public static Date getBuildDate()
{
Date result = null;
try
{
DateFormat format = new SimpleDateFormat("yyyy-MM-dd_HH-mm-ss");
String raw = versionProperties.getProperty("build_date");
if(raw != null)
{
result = format.parse(raw);
}
}
catch (ParseException ex)... | [
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/controlpanel/SearchOptionsPanel.java | SearchOptionsPanel.mergeConfigValue | private String mergeConfigValue(String key, Set<String> corpora,
CorpusConfigMap corpusConfigurations)
{
Set<String> values = new TreeSet<>();
for(String corpus : corpora)
{
CorpusConfig config = corpusConfigurations.get(corpus);
if(config != null)
{
String v = config.getConf... | java | private String mergeConfigValue(String key, Set<String> corpora,
CorpusConfigMap corpusConfigurations)
{
Set<String> values = new TreeSet<>();
for(String corpus : corpora)
{
CorpusConfig config = corpusConfigurations.get(corpus);
if(config != null)
{
String v = config.getConf... | [
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/controlpanel/SearchOptionsPanel.java | SearchOptionsPanel.mergeConfigs | private CorpusConfig mergeConfigs(Set<String> corpora,
CorpusConfigMap corpusConfigurations)
{
CorpusConfig corpusConfig = new CorpusConfig();
// calculate the left and right context.
String leftCtx = mergeConfigValue(KEY_MAX_CONTEXT_LEFT, corpora,
corpusConfigurations);
String rightCtx = ... | java | private CorpusConfig mergeConfigs(Set<String> corpora,
CorpusConfigMap corpusConfigurations)
{
CorpusConfig corpusConfig = new CorpusConfig();
// calculate the left and right context.
String leftCtx = mergeConfigValue(KEY_MAX_CONTEXT_LEFT, corpora,
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/controlpanel/SearchOptionsPanel.java | SearchOptionsPanel.checkSegments | private String checkSegments(String key, Set<String> corpora, CorpusConfigMap corpusConfigurations)
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String segmentation = null;
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{
CorpusConfig c = null;
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... | java | private String checkSegments(String key, Set<String> corpora, CorpusConfigMap corpusConfigurations)
{
String segmentation = null;
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{
CorpusConfig c = null;
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/controlpanel/SearchOptionsPanel.java | SearchOptionsPanel.updateContext | private void updateContext(Container c ,int maxCtx, int ctxSteps, boolean keepCustomValues)
{
if(!keepCustomValues)
{
c.removeAllItems();
}
for (Integer i : PREDEFINED_CONTEXTS)
{
if (i < maxCtx)
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c.addItem(i);
}
}
for (int step = ctxSteps; step < ma... | java | private void updateContext(Container c ,int maxCtx, int ctxSteps, boolean keepCustomValues)
{
if(!keepCustomValues)
{
c.removeAllItems();
}
for (Integer i : PREDEFINED_CONTEXTS)
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/AdminServiceImpl.java | AdminServiceImpl.getUserConfig | @GET
@Path("userconfig")
@Produces("application/xml")
public UserConfig getUserConfig()
{
Subject user = SecurityUtils.getSubject();
user.checkPermission("admin:read:userconfig");
return adminDao.retrieveUserConfig((String) user.getPrincipal());
} | java | @GET
@Path("userconfig")
@Produces("application/xml")
public UserConfig getUserConfig()
{
Subject user = SecurityUtils.getSubject();
user.checkPermission("admin:read:userconfig");
return adminDao.retrieveUserConfig((String) user.getPrincipal());
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korpling/ANNIS | annis-service/src/main/java/annis/service/internal/AdminServiceImpl.java | AdminServiceImpl.setUserConfig | @POST
@Path("userconfig")
@Consumes("application/xml")
public Response setUserConfig(JAXBElement<UserConfig> config)
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Subject user = SecurityUtils.getSubject();
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String userName = (String) user.getPrincipal();
adminDao.storeUserConfig(userNam... | java | @POST
@Path("userconfig")
@Consumes("application/xml")
public Response setUserConfig(JAXBElement<UserConfig> config)
{
Subject user = SecurityUtils.getSubject();
user.checkPermission("admin:write:userconfig");
String userName = (String) user.getPrincipal();
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korpling/ANNIS | annis-interfaces/src/main/java/annis/service/objects/CorpusConfig.java | CorpusConfig.setConfig | public void setConfig(String configName, String configValue)
{
if (config == null)
{
config = new Properties();
}
if(configValue == null)
{
config.remove(configName);
}
else
{
config.setProperty(configName, configValue);
}
} | java | public void setConfig(String configName, String configValue)
{
if (config == null)
{
config = new Properties();
}
if(configValue == null)
{
config.remove(configName);
}
else
{
config.setProperty(configName, configValue);
}
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/requesthandler/ContentRange.java | ContentRange.parseFromHeader | public static List<ContentRange> parseFromHeader(String rawRange,
long totalSize,
int maxNum) throws InvalidRangeException
{
List<ContentRange> result = new ArrayList<>();
if (rawRange != null)
{
if(!fullPattern.matcher(rawRange).matches())
{
throw new InvalidRangeException("i... | java | public static List<ContentRange> parseFromHeader(String rawRange,
long totalSize,
int maxNum) throws InvalidRangeException
{
List<ContentRange> result = new ArrayList<>();
if (rawRange != null)
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korpling/ANNIS | annis-service/src/main/java/annis/sqlgen/CommonAnnotateWithClauseGenerator.java | CommonAnnotateWithClauseGenerator.getMatchesWithClause | protected List<String> getMatchesWithClause(QueryData queryData, List<QueryNode> alternative, String indent)
{
String indent2= indent + TABSTOP;
String indent3 = indent2 + TABSTOP;
StringBuilder sbRaw = new StringBuilder();
sbRaw.append(indent).append("matchesRaw AS\n");
sbRaw.append(indent)... | java | protected List<String> getMatchesWithClause(QueryData queryData, List<QueryNode> alternative, String indent)
{
String indent2= indent + TABSTOP;
String indent3 = indent2 + TABSTOP;
StringBuilder sbRaw = new StringBuilder();
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korpling/ANNIS | annis-service/src/main/java/annis/sqlgen/CommonAnnotateWithClauseGenerator.java | CommonAnnotateWithClauseGenerator.getSolutionFromMatchesWithClause | protected String getSolutionFromMatchesWithClause(
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String matchesName,
String indent)
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String indent2 = indent + TABSTOP;
StringBuilder sb = new StringBuilder();
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sb.append(indent).append("(\n"... | java | protected String getSolutionFromMatchesWithClause(
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String matchesName,
String indent)
{
String indent2 = indent + TABSTOP;
StringBuilder sb = new StringBuilder();
sb.append(indent).append("solutions AS\n");
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korpling/ANNIS | annis-service/src/main/java/annis/ql/parser/QueryData.java | QueryData.toAQL | public static String toAQL(List<QueryNode> alternative)
{
List<String> fragments = new LinkedList<>();
for(QueryNode n : alternative)
{
String frag = n.toAQLNodeFragment();
if(frag != null && !frag.isEmpty())
{
fragments.add(frag);
}
}
for(QueryNode n : al... | java | public static String toAQL(List<QueryNode> alternative)
{
List<String> fragments = new LinkedList<>();
for(QueryNode n : alternative)
{
String frag = n.toAQLNodeFragment();
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fragments.add(frag);
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korpling/ANNIS | annis-service/src/main/java/annis/ql/parser/QueryData.java | QueryData.toAQL | public String toAQL()
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StringBuilder sb = new StringBuilder();
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StringBuilder sb = new StringBuilder();
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List<QueryNode> alt = itAlternative.next();
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korpling/ANNIS | annis-service/src/main/java/annis/security/ANNISUserConfigurationManager.java | ANNISUserConfigurationManager.writeUser | public boolean writeUser(User user) {
// save user info to file
if (resourcePath != null) {
lock.writeLock().lock();
try {
File userDir = new File(resourcePath, "users");
if (userDir.isDirectory()) {
// get the file which corresponds to the user
File userFile = new File(userDir.getAbsoluteP... | java | public boolean writeUser(User user) {
// save user info to file
if (resourcePath != null) {
lock.writeLock().lock();
try {
File userDir = new File(resourcePath, "users");
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korpling/ANNIS | annis-service/src/main/java/annis/security/ANNISUserConfigurationManager.java | ANNISUserConfigurationManager.deleteUser | public boolean deleteUser(String userName) {
// load user info from file
if (resourcePath != null) {
lock.writeLock().lock();
try {
File userDir = new File(resourcePath, "users");
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// get the file which corresponds to the user
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// load user info from file
if (resourcePath != null) {
lock.writeLock().lock();
try {
File userDir = new File(resourcePath, "users");
if (userDir.isDirectory()) {
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korpling/ANNIS | annis-service/src/main/java/annis/security/ANNISUserConfigurationManager.java | ANNISUserConfigurationManager.deleteGroup | public boolean deleteGroup(String groupName) {
if (groupsFile != null) {
lock.writeLock().lock();
try {
reloadGroupsFromFile();
groups.remove(groupName);
return writeGroupFile();
} finally {
lock.writeLock().unlock();
}
} // end if resourcePath not null
return false;
} | java | public boolean deleteGroup(String groupName) {
if (groupsFile != null) {
lock.writeLock().lock();
try {
reloadGroupsFromFile();
groups.remove(groupName);
return writeGroupFile();
} finally {
lock.writeLock().unlock();
}
} // end if resourcePath not null
return false;
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korpling/ANNIS | annis-service/src/main/java/annis/security/ANNISUserConfigurationManager.java | ANNISUserConfigurationManager.getUserFromFile | private User getUserFromFile(File userFile) {
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try (FileInputStream userFileIO = new FileInputStream(userFile);) {
Properties userProps = new Properties();
userProps.load(userFileIO);
return new User(userFile.getName(), userProps);
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if (userFile.isFile() && userFile.canRead()) {
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Properties userProps = new Properties();
userProps.load(userFileIO);
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korpling/ANNIS | annis-service/src/main/java/annis/administration/DeleteCorpusDao.java | DeleteCorpusDao.checkAndRemoveTopLevelCorpus | @Transactional(readOnly = false, propagation = Propagation.REQUIRES_NEW,
isolation = Isolation.READ_COMMITTED)
public void checkAndRemoveTopLevelCorpus(String corpusName)
{
if (existConflictingTopLevelCorpus(corpusName))
{
log.info("delete conflicting corpus: {}", corpusName);
List<String> c... | java | @Transactional(readOnly = false, propagation = Propagation.REQUIRES_NEW,
isolation = Isolation.READ_COMMITTED)
public void checkAndRemoveTopLevelCorpus(String corpusName)
{
if (existConflictingTopLevelCorpus(corpusName))
{
log.info("delete conflicting corpus: {}", corpusName);
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korpling/ANNIS | annis-interfaces/src/main/java/annis/security/User.java | User.toProperties | public Properties toProperties()
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Properties props = new Properties();
if(passwordHash != null)
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props.put("password", passwordHash);
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if(groups != null && !groups.isEmpty())
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props.put("groups", Joiner.on(',').join(groups));
}
if(permissions != null && !permissions.isE... | java | public Properties toProperties()
{
Properties props = new Properties();
if(passwordHash != null)
{
props.put("password", passwordHash);
}
if(groups != null && !groups.isEmpty())
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props.put("groups", Joiner.on(',').join(groups));
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/docbrowser/DocBrowserController.java | DocBrowserController.createInput | public static VisualizerInput createInput(String corpus, String docName,
Visualizer config, boolean isUsingRawText, List<String> nodeAnnoFilter)
{
VisualizerInput input = new VisualizerInput();
// set mappings and namespaces. some visualizer do not survive without
input.setMappings(parseMappings(c... | java | public static VisualizerInput createInput(String corpus, String docName,
Visualizer config, boolean isUsingRawText, List<String> nodeAnnoFilter)
{
VisualizerInput input = new VisualizerInput();
// set mappings and namespaces. some visualizer do not survive without
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/exporter/CSVMultiTokExporter.java | CSVMultiTokExporter.getMatchedNodes | private Set<SNode> getMatchedNodes(SDocumentGraph graph) {
Set<SNode> matchedNodes = new HashSet<>();
for (SNode node: graph.getNodes()) {
if (node.getFeature(AnnisConstants.ANNIS_NS, AnnisConstants.FEAT_MATCHEDNODE) != null)
matchedNodes.add(node);
}
return matchedNodes;
} | java | private Set<SNode> getMatchedNodes(SDocumentGraph graph) {
Set<SNode> matchedNodes = new HashSet<>();
for (SNode node: graph.getNodes()) {
if (node.getFeature(AnnisConstants.ANNIS_NS, AnnisConstants.FEAT_MATCHEDNODE) != null)
matchedNodes.add(node);
}
return matchedNodes;
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/exporter/CSVMultiTokExporter.java | CSVMultiTokExporter.outputText | @Override
public void outputText(SDocumentGraph graph, boolean alignmc, int matchNumber,
Writer out) throws IOException, IllegalArgumentException
{
// first match
if (matchNumber == 0)
{
// output header
List<String> headerLine = new ArrayList<>();
for(Map.Entry<Integer, TreeSet<S... | java | @Override
public void outputText(SDocumentGraph graph, boolean alignmc, int matchNumber,
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// first match
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korpling/ANNIS | annis-service/src/main/java/annis/sqlgen/SaltAnnotateExtractor.java | SaltAnnotateExtractor.handleArtificialDominanceRelation | private boolean handleArtificialDominanceRelation(SDocumentGraph graph,
SNode source, SNode target,
SRelation rel, SLayer layer,
long componentID, long pre)
{
List<SRelation<SNode,SNode>> mirrorRelations = graph.getRelations(source.getId(),
target.getId());
if (mirrorRelations != null && mir... | java | private boolean handleArtificialDominanceRelation(SDocumentGraph graph,
SNode source, SNode target,
SRelation rel, SLayer layer,
long componentID, long pre)
{
List<SRelation<SNode,SNode>> mirrorRelations = graph.getRelations(source.getId(),
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korpling/ANNIS | annis-service/src/main/java/annis/sqlgen/SaltAnnotateExtractor.java | SaltAnnotateExtractor.findOrAddSLayer | private SLayer findOrAddSLayer(String name, SDocumentGraph graph)
{
List<SLayer> layerList = graph.getLayerByName(name);
SLayer layer = (layerList != null && layerList.size() > 0)
? layerList.get(0) : null;
if (layer == null)
{
layer = SaltFactory.createSLayer();
layer.setName(name);... | java | private SLayer findOrAddSLayer(String name, SDocumentGraph graph)
{
List<SLayer> layerList = graph.getLayerByName(name);
SLayer layer = (layerList != null && layerList.size() > 0)
? layerList.get(0) : null;
if (layer == null)
{
layer = SaltFactory.createSLayer();
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korpling/ANNIS | annis-libgui/src/main/java/annis/libgui/PDFPageHelper.java | PDFPageHelper.getPageAnnoForGridEvent | public String getPageAnnoForGridEvent(SSpan span) {
int left = getLeftIndexFromSNode(span);
int right = getRightIndexFromSNode(span);
if (sspans == null) {
log.warn("no page annos found");
return null;
}
// lookup left index
int leftIdx = -1;
for (Integer i : sspans.keySet()) {... | java | public String getPageAnnoForGridEvent(SSpan span) {
int left = getLeftIndexFromSNode(span);
int right = getRightIndexFromSNode(span);
if (sspans == null) {
log.warn("no page annos found");
return null;
}
// lookup left index
int leftIdx = -1;
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korpling/ANNIS | annis-libgui/src/main/java/annis/libgui/PDFPageHelper.java | PDFPageHelper.getLeftIndexFromSNode | public int getLeftIndexFromSNode(SSpan s)
{
RelannisNodeFeature feat =
(RelannisNodeFeature) s.getFeature(SaltUtil.createQName(ANNIS_NS, FEAT_RELANNIS_NODE)).getValue();
return (int) feat.getLeftToken();
} | java | public int getLeftIndexFromSNode(SSpan s)
{
RelannisNodeFeature feat =
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korpling/ANNIS | annis-libgui/src/main/java/annis/libgui/PDFPageHelper.java | PDFPageHelper.getRightIndexFromSNode | public int getRightIndexFromSNode(SSpan s)
{
RelannisNodeFeature feat =
(RelannisNodeFeature) s.getFeature(SaltUtil.createQName(ANNIS_NS,
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return (int) feat.getRightToken();
} | java | public int getRightIndexFromSNode(SSpan s)
{
RelannisNodeFeature feat =
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/ExampleQueriesPanel.java | ExampleQueriesPanel.setUpTable | private void setUpTable() {
setSizeFull();
// expand the table
table.setSizeFull();
// Allow selecting items from the table.
table.setSelectable(false);
// Send changes in selection immediately to server.
table.setImmediate(true);
// set custom style
table.addStyleName("example-queries-table");
... | java | private void setUpTable() {
setSizeFull();
// expand the table
table.setSizeFull();
// Allow selecting items from the table.
table.setSelectable(false);
// Send changes in selection immediately to server.
table.setImmediate(true);
// set custom style
table.addStyleName("example-queries-table");
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/ExampleQueriesPanel.java | ExampleQueriesPanel.addItems | private void addItems(List<ExampleQuery> examples) {
if (examples != null && examples.size() > 0) {
egContainer.addAll(examples);
showTab();
} else {
hideTabSheet();
}
} | java | private void addItems(List<ExampleQuery> examples) {
if (examples != null && examples.size() > 0) {
egContainer.addAll(examples);
showTab();
} else {
hideTabSheet();
}
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/ExampleQueriesPanel.java | ExampleQueriesPanel.showTab | private void showTab() {
if (parentTab != null) {
tab = parentTab.getTab(this);
if (tab != null) {
// FIXME: this should be added by the constructor or by the panel that adds this
// tab
// tab.getComponent().addStyleName("example-queries-tab");
tab.setEnabled(true);
if (!(parentTab.getSele... | java | private void showTab() {
if (parentTab != null) {
tab = parentTab.getTab(this);
if (tab != null) {
// FIXME: this should be added by the constructor or by the panel that adds this
// tab
// tab.getComponent().addStyleName("example-queries-tab");
tab.setEnabled(true);
if (!(parentTab.getSele... | [
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/ExampleQueriesPanel.java | ExampleQueriesPanel.loadExamplesFromRemote | private static List<ExampleQuery> loadExamplesFromRemote(Set<String> corpusNames) {
List<ExampleQuery> result = new LinkedList<>();
WebResource service = Helper.getAnnisWebResource();
try {
if (corpusNames == null || corpusNames.isEmpty()) {
result = service.path("query").path("corpora").path("example-quer... | java | private static List<ExampleQuery> loadExamplesFromRemote(Set<String> corpusNames) {
List<ExampleQuery> result = new LinkedList<>();
WebResource service = Helper.getAnnisWebResource();
try {
if (corpusNames == null || corpusNames.isEmpty()) {
result = service.path("query").path("corpora").path("example-quer... | [
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@param corpusNames Specifies the corpora example queries are fetched for. If
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korpling/ANNIS | annis-gui/src/main/java/annis/gui/ExampleQueriesPanel.java | ExampleQueriesPanel.setSelectedCorpusInBackground | public void setSelectedCorpusInBackground(final Set<String> selectedCorpora) {
loadingIndicator.setVisible(true);
table.setVisible(false);
Background.run(new ExampleFetcher(selectedCorpora, UI.getCurrent()));
} | java | public void setSelectedCorpusInBackground(final Set<String> selectedCorpora) {
loadingIndicator.setVisible(true);
table.setVisible(false);
Background.run(new ExampleFetcher(selectedCorpora, UI.getCurrent()));
} | [
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@param selectedCorpora Specifies the corpora example queries are fetched for.
If it is null, all available example queries are
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korpling/ANNIS | annis-service/src/main/java/annis/administration/CorpusAdministration.java | CorpusAdministration.unzipCorpus | private List<File> unzipCorpus(File outDir, ZipFile zip)
{
List<File> rootDirs = new ArrayList<>();
Enumeration<? extends ZipEntry> zipEnum = zip.entries();
while (zipEnum.hasMoreElements())
{
ZipEntry e = zipEnum.nextElement();
File outFile = new File(outDir, e.getName().replaceAll("\\/"... | java | private List<File> unzipCorpus(File outDir, ZipFile zip)
{
List<File> rootDirs = new ArrayList<>();
Enumeration<? extends ZipEntry> zipEnum = zip.entries();
while (zipEnum.hasMoreElements())
{
ZipEntry e = zipEnum.nextElement();
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@param outDir The ouput directory.
@param zip ZIP-file to extract.
@return A list of root directories where the tab-files are located if
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