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amazon-archives/aws-sdk-java-resources | aws-resources-core/src/main/java/com/amazonaws/resources/internal/ReflectionUtils.java | ReflectionUtils.digIn | private static Object digIn(Object target, String field) {
if (target instanceof List) {
// The 'field' will tell us what type of objects belong in the list.
@SuppressWarnings("unchecked")
List<Object> list = (List<Object>) target;
return digInList(list, field);
} else if (target instanceof Map) {
// The 'field' will tell us what type of objects belong in the map.
@SuppressWarnings("unchecked")
Map<String, Object> map = (Map<String, Object>) target;
return digInMap(map, field);
} else {
return digInObject(target, field);
}
} | java | private static Object digIn(Object target, String field) {
if (target instanceof List) {
// The 'field' will tell us what type of objects belong in the list.
@SuppressWarnings("unchecked")
List<Object> list = (List<Object>) target;
return digInList(list, field);
} else if (target instanceof Map) {
// The 'field' will tell us what type of objects belong in the map.
@SuppressWarnings("unchecked")
Map<String, Object> map = (Map<String, Object>) target;
return digInMap(map, field);
} else {
return digInObject(target, field);
}
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amazon-archives/aws-sdk-java-resources | aws-resources-core/src/main/java/com/amazonaws/resources/internal/ReflectionUtils.java | ReflectionUtils.setValue | private static void setValue(Object target, String field, Object value) {
// TODO: Should we do this for all numbers, not just '0'?
if ("0".equals(field)) {
if (!(target instanceof Collection)) {
throw new IllegalArgumentException(
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Collection<Object> collection = (Collection<Object>) target;
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try {
setter.invoke(target, value);
} catch (IllegalAccessException exception) {
throw new IllegalStateException(
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} catch(InvocationTargetException exception) {
if (exception.getCause() instanceof RuntimeException) {
throw (RuntimeException) exception.getCause();
}
throw new IllegalStateException(
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exception);
}
}
} | java | private static void setValue(Object target, String field, Object value) {
// TODO: Should we do this for all numbers, not just '0'?
if ("0".equals(field)) {
if (!(target instanceof Collection)) {
throw new IllegalArgumentException(
"Cannot evaluate '0' on object " + target);
}
@SuppressWarnings("unchecked")
Collection<Object> collection = (Collection<Object>) target;
collection.add(value);
} else {
Method setter = findMethod(target, "set" + field, value.getClass());
try {
setter.invoke(target, value);
} catch (IllegalAccessException exception) {
throw new IllegalStateException(
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exception);
} catch(InvocationTargetException exception) {
if (exception.getCause() instanceof RuntimeException) {
throw (RuntimeException) exception.getCause();
}
throw new IllegalStateException(
"Checked exception thrown from setter method",
exception);
}
}
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amazon-archives/aws-sdk-java-resources | aws-resources-core/src/main/java/com/amazonaws/resources/internal/ReflectionUtils.java | ReflectionUtils.findMethod | private static Method findMethod(
Object target,
String name,
Class<?> parameterType) {
for (Method method : target.getClass().getMethods()) {
if (!method.getName().equals(name)) {
continue;
}
Class<?>[] parameters = method.getParameterTypes();
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continue;
}
if (parameters[0].isAssignableFrom(parameterType)) {
return method;
}
}
throw new IllegalStateException(
"No method '" + name + "(" + parameterType + ") on type "
+ target.getClass());
} | java | private static Method findMethod(
Object target,
String name,
Class<?> parameterType) {
for (Method method : target.getClass().getMethods()) {
if (!method.getName().equals(name)) {
continue;
}
Class<?>[] parameters = method.getParameterTypes();
if (parameters.length != 1) {
continue;
}
if (parameters[0].isAssignableFrom(parameterType)) {
return method;
}
}
throw new IllegalStateException(
"No method '" + name + "(" + parameterType + ") on type "
+ target.getClass());
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amazon-archives/aws-sdk-java-resources | aws-resources-core/src/main/java/com/amazonaws/resources/internal/model/Utils.java | Utils.isMultiValuedPath | public static boolean isMultiValuedPath(List<String> expression) {
for (String element : expression) {
if ("*".equals(element) || element.startsWith("*:")) {
return true;
}
}
return false;
} | java | public static boolean isMultiValuedPath(List<String> expression) {
for (String element : expression) {
if ("*".equals(element) || element.startsWith("*:")) {
return true;
}
}
return false;
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amazon-archives/aws-sdk-java-resources | aws-resources-core/src/main/java/com/amazonaws/resources/internal/ResourceImpl.java | ResourceImpl.load | public synchronized boolean load(
AmazonWebServiceRequest request,
ResultCapture<?> extractor) {
if (attributes != null) {
return false;
}
ActionModel action = resourceModel.getLoadAction();
if (action == null) {
throw new UnsupportedOperationException(
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@SuppressWarnings("unchecked")
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ActionResult result = ActionUtils.perform(
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this.attributes = parseAttributes(resourceModel, result.getData());
return true;
} | java | public synchronized boolean load(
AmazonWebServiceRequest request,
ResultCapture<?> extractor) {
if (attributes != null) {
return false;
}
ActionModel action = resourceModel.getLoadAction();
if (action == null) {
throw new UnsupportedOperationException(
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}
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@SuppressWarnings("unchecked")
ResultCapture<Object> erasedExtractor =
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ActionResult result = ActionUtils.perform(
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this.attributes = parseAttributes(resourceModel, result.getData());
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amazon-archives/aws-sdk-java-resources | aws-resources-core/src/main/java/com/amazonaws/resources/internal/ResourceImpl.java | ResourceImpl.performAction | public ActionResult performAction(
String name,
AmazonWebServiceRequest request,
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} | java | public ActionResult performAction(
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AmazonWebServiceRequest request,
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ActionModel action = resourceModel.getAction(name);
if (action == null) {
throw new UnsupportedOperationException(
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amazon-archives/aws-sdk-java-resources | aws-resources-core/src/main/java/com/amazonaws/resources/ServiceBuilder.java | ServiceBuilder.build | public T build() {
C clientObject = client;
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}
return factory.create(clientObject);
} | java | public T build() {
C clientObject = client;
if (clientObject == null) {
clientObject = createClient();
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amazon-archives/aws-sdk-java-resources | aws-resources-core/src/main/java/com/amazonaws/resources/internal/ResourcePageImpl.java | ResourcePageImpl.nextPage | public ResourcePageImpl nextPage(ResultCapture<Object> extractor) {
if (getNextToken() == null) {
throw new NoSuchElementException("There is no next page");
}
ActionResult result = ActionUtils.perform(
context,
listActionModel,
request,
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return new ResourcePageImpl(
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listActionModel,
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result);
} | java | public ResourcePageImpl nextPage(ResultCapture<Object> extractor) {
if (getNextToken() == null) {
throw new NoSuchElementException("There is no next page");
}
ActionResult result = ActionUtils.perform(
context,
listActionModel,
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.getLemma | public Lemma getLemma() {
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if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_lemma == null)
jcasType.jcas.throwFeatMissing("lemma", "de.julielab.jules.types.Token");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.setLemma | public void setLemma(Lemma v) {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.getOrthogr | public String getOrthogr() {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.setOrthogr | public void setOrthogr(String v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_orthogr == null)
jcasType.jcas.throwFeatMissing("orthogr", "de.julielab.jules.types.Token");
jcasType.ll_cas.ll_setStringValue(addr, ((Token_Type)jcasType).casFeatCode_orthogr, v);} | java | public void setOrthogr(String v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_orthogr == null)
jcasType.jcas.throwFeatMissing("orthogr", "de.julielab.jules.types.Token");
jcasType.ll_cas.ll_setStringValue(addr, ((Token_Type)jcasType).casFeatCode_orthogr, v);} | [
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jcasType.jcas.throwFeatMissing("depRel", "de.julielab.jules.types.Token");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.setDepRel | public void setDepRel(FSArray v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_depRel == null)
jcasType.jcas.throwFeatMissing("depRel", "de.julielab.jules.types.Token");
jcasType.ll_cas.ll_setRefValue(addr, ((Token_Type)jcasType).casFeatCode_depRel, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setDepRel(FSArray v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_depRel == null)
jcasType.jcas.throwFeatMissing("depRel", "de.julielab.jules.types.Token");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.getDepRel | public DependencyRelation getDepRel(int i) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_depRel == null)
jcasType.jcas.throwFeatMissing("depRel", "de.julielab.jules.types.Token");
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if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_depRel == null)
jcasType.jcas.throwFeatMissing("depRel", "de.julielab.jules.types.Token");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.setDepRel | public void setDepRel(int i, DependencyRelation v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_depRel == null)
jcasType.jcas.throwFeatMissing("depRel", "de.julielab.jules.types.Token");
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if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_depRel == null)
jcasType.jcas.throwFeatMissing("depRel", "de.julielab.jules.types.Token");
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jcasType.ll_cas.ll_setRefArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((Token_Type)jcasType).casFeatCode_depRel), i, jcasType.ll_cas.ll_getFSRef(v));} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.getLemmaStr | public String getLemmaStr() {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_lemmaStr == null)
jcasType.jcas.throwFeatMissing("lemmaStr", "de.julielab.jules.types.Token");
return jcasType.ll_cas.ll_getStringValue(addr, ((Token_Type)jcasType).casFeatCode_lemmaStr);} | java | public String getLemmaStr() {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_lemmaStr == null)
jcasType.jcas.throwFeatMissing("lemmaStr", "de.julielab.jules.types.Token");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.setLemmaStr | public void setLemmaStr(String v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_lemmaStr == null)
jcasType.jcas.throwFeatMissing("lemmaStr", "de.julielab.jules.types.Token");
jcasType.ll_cas.ll_setStringValue(addr, ((Token_Type)jcasType).casFeatCode_lemmaStr, v);} | java | public void setLemmaStr(String v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_lemmaStr == null)
jcasType.jcas.throwFeatMissing("lemmaStr", "de.julielab.jules.types.Token");
jcasType.ll_cas.ll_setStringValue(addr, ((Token_Type)jcasType).casFeatCode_lemmaStr, v);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.getTopicIds | public String getTopicIds() {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_topicIds == null)
jcasType.jcas.throwFeatMissing("topicIds", "de.julielab.jules.types.Token");
return jcasType.ll_cas.ll_getStringValue(addr, ((Token_Type)jcasType).casFeatCode_topicIds);} | java | public String getTopicIds() {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_topicIds == null)
jcasType.jcas.throwFeatMissing("topicIds", "de.julielab.jules.types.Token");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Token.java | Token.setTopicIds | public void setTopicIds(String v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_topicIds == null)
jcasType.jcas.throwFeatMissing("topicIds", "de.julielab.jules.types.Token");
jcasType.ll_cas.ll_setStringValue(addr, ((Token_Type)jcasType).casFeatCode_topicIds, v);} | java | public void setTopicIds(String v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_topicIds == null)
jcasType.jcas.throwFeatMissing("topicIds", "de.julielab.jules.types.Token");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/RelationMention.java | RelationMention.setArguments | public void setArguments(FSArray v) {
if (RelationMention_Type.featOkTst && ((RelationMention_Type)jcasType).casFeat_arguments == null)
jcasType.jcas.throwFeatMissing("arguments", "de.julielab.jules.types.RelationMention");
jcasType.ll_cas.ll_setRefValue(addr, ((RelationMention_Type)jcasType).casFeatCode_arguments, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setArguments(FSArray v) {
if (RelationMention_Type.featOkTst && ((RelationMention_Type)jcasType).casFeat_arguments == null)
jcasType.jcas.throwFeatMissing("arguments", "de.julielab.jules.types.RelationMention");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/RelationMention.java | RelationMention.setArguments | public void setArguments(int i, ArgumentMention v) {
if (RelationMention_Type.featOkTst && ((RelationMention_Type)jcasType).casFeat_arguments == null)
jcasType.jcas.throwFeatMissing("arguments", "de.julielab.jules.types.RelationMention");
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if (RelationMention_Type.featOkTst && ((RelationMention_Type)jcasType).casFeat_arguments == null)
jcasType.jcas.throwFeatMissing("arguments", "de.julielab.jules.types.RelationMention");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((RelationMention_Type)jcasType).casFeatCode_arguments), i);
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BlueBrain/bluima | modules/bluima_regions/src/main/java/ubic/pubmedgate/resolve/mentionEditors/DirectionSplittingMentionEditor.java | DirectionSplittingMentionEditor.editMention | public Set<String> editMention(String mention) {
Set<String> result = new HashSet<String>();
// tokenize
StringTokenizer tokens = new StringTokenizer(mention, delims, false);
List<String> tokenList = new LinkedList<String>();
if (tokens.countTokens() < 3)
return result;
while (tokens.hasMoreTokens()) {
tokenList.add(tokens.nextToken());
}
String first = tokenList.get(0);
String second = tokenList.get(1);
String third = tokenList.get(2);
if (second.equals("and") || second.equals("or") || second.equals("to")) {
if (directions.contains(first) && directions.contains(third)) {
// log.info( first + " " + second + " " + third + " Full:" + s
// );
int spot = mention.indexOf(third) + third.length();
result.add(first + mention.substring(spot));
result.add(third + mention.substring(spot));
}
}
return result;
} | java | public Set<String> editMention(String mention) {
Set<String> result = new HashSet<String>();
// tokenize
StringTokenizer tokens = new StringTokenizer(mention, delims, false);
List<String> tokenList = new LinkedList<String>();
if (tokens.countTokens() < 3)
return result;
while (tokens.hasMoreTokens()) {
tokenList.add(tokens.nextToken());
}
String first = tokenList.get(0);
String second = tokenList.get(1);
String third = tokenList.get(2);
if (second.equals("and") || second.equals("or") || second.equals("to")) {
if (directions.contains(first) && directions.contains(third)) {
// log.info( first + " " + second + " " + third + " Full:" + s
// );
int spot = mention.indexOf(third) + third.length();
result.add(first + mention.substring(spot));
result.add(third + mention.substring(spot));
}
}
return result;
} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Coordination.java | Coordination.getResolved | public String getResolved() {
if (Coordination_Type.featOkTst && ((Coordination_Type)jcasType).casFeat_resolved == null)
jcasType.jcas.throwFeatMissing("resolved", "de.julielab.jules.types.Coordination");
return jcasType.ll_cas.ll_getStringValue(addr, ((Coordination_Type)jcasType).casFeatCode_resolved);} | java | public String getResolved() {
if (Coordination_Type.featOkTst && ((Coordination_Type)jcasType).casFeat_resolved == null)
jcasType.jcas.throwFeatMissing("resolved", "de.julielab.jules.types.Coordination");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Coordination.java | Coordination.setResolved | public void setResolved(String v) {
if (Coordination_Type.featOkTst && ((Coordination_Type)jcasType).casFeat_resolved == null)
jcasType.jcas.throwFeatMissing("resolved", "de.julielab.jules.types.Coordination");
jcasType.ll_cas.ll_setStringValue(addr, ((Coordination_Type)jcasType).casFeatCode_resolved, v);} | java | public void setResolved(String v) {
if (Coordination_Type.featOkTst && ((Coordination_Type)jcasType).casFeat_resolved == null)
jcasType.jcas.throwFeatMissing("resolved", "de.julielab.jules.types.Coordination");
jcasType.ll_cas.ll_setStringValue(addr, ((Coordination_Type)jcasType).casFeatCode_resolved, v);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Coordination.java | Coordination.getElliptical | public boolean getElliptical() {
if (Coordination_Type.featOkTst && ((Coordination_Type)jcasType).casFeat_elliptical == null)
jcasType.jcas.throwFeatMissing("elliptical", "de.julielab.jules.types.Coordination");
return jcasType.ll_cas.ll_getBooleanValue(addr, ((Coordination_Type)jcasType).casFeatCode_elliptical);} | java | public boolean getElliptical() {
if (Coordination_Type.featOkTst && ((Coordination_Type)jcasType).casFeat_elliptical == null)
jcasType.jcas.throwFeatMissing("elliptical", "de.julielab.jules.types.Coordination");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/Coordination.java | Coordination.setElliptical | public void setElliptical(boolean v) {
if (Coordination_Type.featOkTst && ((Coordination_Type)jcasType).casFeat_elliptical == null)
jcasType.jcas.throwFeatMissing("elliptical", "de.julielab.jules.types.Coordination");
jcasType.ll_cas.ll_setBooleanValue(addr, ((Coordination_Type)jcasType).casFeatCode_elliptical, v);} | java | public void setElliptical(boolean v) {
if (Coordination_Type.featOkTst && ((Coordination_Type)jcasType).casFeat_elliptical == null)
jcasType.jcas.throwFeatMissing("elliptical", "de.julielab.jules.types.Coordination");
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BlueBrain/bluima | modules/bluima_banner/src/main/java/banner/BannerProperties.java | BannerProperties.log | public void log()
{
System.out.println("Lemmatiser: " + (lemmatiser == null ? null : lemmatiser.getClass().getName()));
System.out.println("POSTagger: " + (posTagger == null ? null : posTagger.getClass().getName()));
System.out.println("Tokenizer: " + tokenizer.getClass().getName());
System.out.println("Tag format: " + tagFormat.name());
System.out.println("PostProcessor: " + (postProcessor == null ? null : postProcessor.getClass().getName()));
System.out.println("Using numeric normalization: " + useNumericNormalization);
System.out.println("CRF order is " + order);
System.out.println("Using feature induction: " + useFeatureInduction);
System.out.println("Text textDirection: " + textDirection);
} | java | public void log()
{
System.out.println("Lemmatiser: " + (lemmatiser == null ? null : lemmatiser.getClass().getName()));
System.out.println("POSTagger: " + (posTagger == null ? null : posTagger.getClass().getName()));
System.out.println("Tokenizer: " + tokenizer.getClass().getName());
System.out.println("Tag format: " + tagFormat.name());
System.out.println("PostProcessor: " + (postProcessor == null ? null : postProcessor.getClass().getName()));
System.out.println("Using numeric normalization: " + useNumericNormalization);
System.out.println("CRF order is " + order);
System.out.println("Using feature induction: " + useFeatureInduction);
System.out.println("Text textDirection: " + textDirection);
} | [
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BlueBrain/bluima | modules/bluima_abbreviations/src/main/java/com/wcohen/ss/MultiStringAvgDistance.java | MultiStringAvgDistance.scoreCombination | protected double scoreCombination(double[] multiScore) {
double sum = 0.0;
for (int i=0; i<multiScore.length; i++) {
sum += multiScore[i];
}
return sum/multiScore.length;
} | java | protected double scoreCombination(double[] multiScore) {
double sum = 0.0;
for (int i=0; i<multiScore.length; i++) {
sum += multiScore[i];
}
return sum/multiScore.length;
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BlueBrain/bluima | modules/bluima_abbreviations/src/main/java/com/wcohen/ss/MultiStringAvgDistance.java | MultiStringAvgDistance.explainScoreCombination | protected String explainScoreCombination(double[] multiScore) {
StringBuffer buf = new StringBuffer("");
PrintfFormat fmt = new PrintfFormat(" %.3f");
buf.append("field-level scores [");
for (int i=0; i<multiScore.length; i++) {
buf.append(fmt.sprintf(multiScore[i]));
}
buf.append("] Average score:");
buf.append(fmt.sprintf( scoreCombination(multiScore) ));
return buf.toString();
} | java | protected String explainScoreCombination(double[] multiScore) {
StringBuffer buf = new StringBuffer("");
PrintfFormat fmt = new PrintfFormat(" %.3f");
buf.append("field-level scores [");
for (int i=0; i<multiScore.length; i++) {
buf.append(fmt.sprintf(multiScore[i]));
}
buf.append("] Average score:");
buf.append(fmt.sprintf( scoreCombination(multiScore) ));
return buf.toString();
} | [
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BlueBrain/bluima | modules/bluima_pdf/src/main/java/edu/psu/seersuite/extractors/tableextractor/extraction/PdfFileFilter.java | PdfFileFilter.accept | public boolean accept(File f)
{
if (f.isDirectory())
{
return false;
}
String name = f.getName().toLowerCase();
return name.endsWith(".pdf");
} | java | public boolean accept(File f)
{
if (f.isDirectory())
{
return false;
}
String name = f.getName().toLowerCase();
return name.endsWith(".pdf");
} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getFirstEntity | public Annotation getFirstEntity() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_firstEntity == null)
jcasType.jcas.throwFeatMissing("firstEntity", "ch.epfl.bbp.uima.types.Cooccurrence");
return (Annotation)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_firstEntity)));} | java | public Annotation getFirstEntity() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_firstEntity == null)
jcasType.jcas.throwFeatMissing("firstEntity", "ch.epfl.bbp.uima.types.Cooccurrence");
return (Annotation)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_firstEntity)));} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setFirstEntity | public void setFirstEntity(Annotation v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_firstEntity == null)
jcasType.jcas.throwFeatMissing("firstEntity", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_firstEntity, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setFirstEntity(Annotation v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_firstEntity == null)
jcasType.jcas.throwFeatMissing("firstEntity", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getSecondEntity | public Annotation getSecondEntity() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_secondEntity == null)
jcasType.jcas.throwFeatMissing("secondEntity", "ch.epfl.bbp.uima.types.Cooccurrence");
return (Annotation)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_secondEntity)));} | java | public Annotation getSecondEntity() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_secondEntity == null)
jcasType.jcas.throwFeatMissing("secondEntity", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setSecondEntity | public void setSecondEntity(Annotation v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_secondEntity == null)
jcasType.jcas.throwFeatMissing("secondEntity", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_secondEntity, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setSecondEntity(Annotation v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_secondEntity == null)
jcasType.jcas.throwFeatMissing("secondEntity", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_secondEntity, jcasType.ll_cas.ll_getFSRef(v));} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getSnippetBegin | public int getSnippetBegin() {
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jcasType.jcas.throwFeatMissing("snippetBegin", "ch.epfl.bbp.uima.types.Cooccurrence");
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jcasType.jcas.throwFeatMissing("snippetBegin", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setSnippetBegin | public void setSnippetBegin(int v) {
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jcasType.jcas.throwFeatMissing("snippetBegin", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getSnippetEnd | public int getSnippetEnd() {
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jcasType.jcas.throwFeatMissing("snippetEnd", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setSnippetEnd | public void setSnippetEnd(int v) {
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jcasType.jcas.throwFeatMissing("snippetEnd", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setIntValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_snippetEnd, v);} | java | public void setSnippetEnd(int v) {
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jcasType.jcas.throwFeatMissing("snippetEnd", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getFirstIds | public StringArray getFirstIds() {
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jcasType.jcas.throwFeatMissing("firstIds", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setFirstIds | public void setFirstIds(StringArray v) {
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jcasType.jcas.throwFeatMissing("firstIds", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_firstIds, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setFirstIds(StringArray v) {
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jcasType.jcas.throwFeatMissing("firstIds", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getFirstIds | public String getFirstIds(int i) {
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jcasType.jcas.throwFeatMissing("firstIds", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setFirstIds | public void setFirstIds(int i, String v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_firstIds == null)
jcasType.jcas.throwFeatMissing("firstIds", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getSecondIds | public StringArray getSecondIds() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_secondIds == null)
jcasType.jcas.throwFeatMissing("secondIds", "ch.epfl.bbp.uima.types.Cooccurrence");
return (StringArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_secondIds)));} | java | public StringArray getSecondIds() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_secondIds == null)
jcasType.jcas.throwFeatMissing("secondIds", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setSecondIds | public void setSecondIds(StringArray v) {
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jcasType.ll_cas.ll_setRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_secondIds, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setSecondIds(StringArray v) {
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jcasType.jcas.throwFeatMissing("secondIds", "ch.epfl.bbp.uima.types.Cooccurrence");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getSecondIds | public String getSecondIds(int i) {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setSecondIds | public void setSecondIds(int i, String v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_secondIds == null)
jcasType.jcas.throwFeatMissing("secondIds", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_secondIds), i);
jcasType.ll_cas.ll_setStringArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_secondIds), i, v);} | java | public void setSecondIds(int i, String v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_secondIds == null)
jcasType.jcas.throwFeatMissing("secondIds", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_secondIds), i);
jcasType.ll_cas.ll_setStringArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_secondIds), i, v);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getCooccurrenceType | public String getCooccurrenceType() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_cooccurrenceType == null)
jcasType.jcas.throwFeatMissing("cooccurrenceType", "ch.epfl.bbp.uima.types.Cooccurrence");
return jcasType.ll_cas.ll_getStringValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_cooccurrenceType);} | java | public String getCooccurrenceType() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_cooccurrenceType == null)
jcasType.jcas.throwFeatMissing("cooccurrenceType", "ch.epfl.bbp.uima.types.Cooccurrence");
return jcasType.ll_cas.ll_getStringValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_cooccurrenceType);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setCooccurrenceType | public void setCooccurrenceType(String v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_cooccurrenceType == null)
jcasType.jcas.throwFeatMissing("cooccurrenceType", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setStringValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_cooccurrenceType, v);} | java | public void setCooccurrenceType(String v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_cooccurrenceType == null)
jcasType.jcas.throwFeatMissing("cooccurrenceType", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setStringValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_cooccurrenceType, v);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getConfidence | public float getConfidence() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_confidence == null)
jcasType.jcas.throwFeatMissing("confidence", "ch.epfl.bbp.uima.types.Cooccurrence");
return jcasType.ll_cas.ll_getFloatValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_confidence);} | java | public float getConfidence() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_confidence == null)
jcasType.jcas.throwFeatMissing("confidence", "ch.epfl.bbp.uima.types.Cooccurrence");
return jcasType.ll_cas.ll_getFloatValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_confidence);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setConfidence | public void setConfidence(float v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_confidence == null)
jcasType.jcas.throwFeatMissing("confidence", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setFloatValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_confidence, v);} | java | public void setConfidence(float v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_confidence == null)
jcasType.jcas.throwFeatMissing("confidence", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setFloatValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_confidence, v);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.getHasInteraction | public boolean getHasInteraction() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_hasInteraction == null)
jcasType.jcas.throwFeatMissing("hasInteraction", "ch.epfl.bbp.uima.types.Cooccurrence");
return jcasType.ll_cas.ll_getBooleanValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_hasInteraction);} | java | public boolean getHasInteraction() {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_hasInteraction == null)
jcasType.jcas.throwFeatMissing("hasInteraction", "ch.epfl.bbp.uima.types.Cooccurrence");
return jcasType.ll_cas.ll_getBooleanValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_hasInteraction);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/Cooccurrence.java | Cooccurrence.setHasInteraction | public void setHasInteraction(boolean v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_hasInteraction == null)
jcasType.jcas.throwFeatMissing("hasInteraction", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setBooleanValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_hasInteraction, v);} | java | public void setHasInteraction(boolean v) {
if (Cooccurrence_Type.featOkTst && ((Cooccurrence_Type)jcasType).casFeat_hasInteraction == null)
jcasType.jcas.throwFeatMissing("hasInteraction", "ch.epfl.bbp.uima.types.Cooccurrence");
jcasType.ll_cas.ll_setBooleanValue(addr, ((Cooccurrence_Type)jcasType).casFeatCode_hasInteraction, v);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/MultipleProteins.java | MultipleProteins.getPresent | public int getPresent() {
if (MultipleProteins_Type.featOkTst && ((MultipleProteins_Type)jcasType).casFeat_present == null)
jcasType.jcas.throwFeatMissing("present", "ch.epfl.bbp.uima.types.MultipleProteins");
return jcasType.ll_cas.ll_getIntValue(addr, ((MultipleProteins_Type)jcasType).casFeatCode_present);} | java | public int getPresent() {
if (MultipleProteins_Type.featOkTst && ((MultipleProteins_Type)jcasType).casFeat_present == null)
jcasType.jcas.throwFeatMissing("present", "ch.epfl.bbp.uima.types.MultipleProteins");
return jcasType.ll_cas.ll_getIntValue(addr, ((MultipleProteins_Type)jcasType).casFeatCode_present);} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/MultipleProteins.java | MultipleProteins.setPresent | public void setPresent(int v) {
if (MultipleProteins_Type.featOkTst && ((MultipleProteins_Type)jcasType).casFeat_present == null)
jcasType.jcas.throwFeatMissing("present", "ch.epfl.bbp.uima.types.MultipleProteins");
jcasType.ll_cas.ll_setIntValue(addr, ((MultipleProteins_Type)jcasType).casFeatCode_present, v);} | java | public void setPresent(int v) {
if (MultipleProteins_Type.featOkTst && ((MultipleProteins_Type)jcasType).casFeat_present == null)
jcasType.jcas.throwFeatMissing("present", "ch.epfl.bbp.uima.types.MultipleProteins");
jcasType.ll_cas.ll_setIntValue(addr, ((MultipleProteins_Type)jcasType).casFeatCode_present, v);} | [
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BlueBrain/bluima | modules/bluima_opennlp/src/main/java/ch/epfl/bbp/shaded/opennlp/tools/ngram/MutableDictionary.java | MutableDictionary.persist | public void persist(File file) throws IOException {
//System.err.println("Writting "+wordMap.size()+" words and "+gramSet.size()+" n-grams");
DataOutputStream output = new DataOutputStream(new GZIPOutputStream(new FileOutputStream(file)));
output.writeUTF(FILE_TYPE);
System.err.println("pruning from "+wordMap.size());
for (Iterator ki=wordMap.iterator();ki.hasNext();) {
String key = (String) ki.next();
if (((CountedNumberedSet) wordMap).getCount(key) < cutoff) {
ki.remove();
}
}
System.err.println("pruning to "+wordMap.size());
output.writeInt(wordMap.size());
for (Iterator ki=wordMap.iterator();ki.hasNext();) {
String key = (String) ki.next();
output.writeUTF(key);
output.writeInt(wordMap.getIndex(key));
}
CountedSet cset = (CountedSet) gramSet;
int gramCount = 0;
for (Iterator gi = gramSet.iterator();gi.hasNext();) {
NGram ngram = (NGram) gi.next();
if (cset.getCount(ngram) >= cutoff) {
int[] words = ngram.getWords();
output.writeInt(words.length);
for (int wi=0;wi<words.length;wi++) {
output.writeInt(words[wi]);
}
gramCount++;
}
else {
//System.err.println("ngram "+cset.getCount(ngram));
}
}
System.err.println("Wrote out "+gramCount+" n-grams");
output.close();
} | java | public void persist(File file) throws IOException {
//System.err.println("Writting "+wordMap.size()+" words and "+gramSet.size()+" n-grams");
DataOutputStream output = new DataOutputStream(new GZIPOutputStream(new FileOutputStream(file)));
output.writeUTF(FILE_TYPE);
System.err.println("pruning from "+wordMap.size());
for (Iterator ki=wordMap.iterator();ki.hasNext();) {
String key = (String) ki.next();
if (((CountedNumberedSet) wordMap).getCount(key) < cutoff) {
ki.remove();
}
}
System.err.println("pruning to "+wordMap.size());
output.writeInt(wordMap.size());
for (Iterator ki=wordMap.iterator();ki.hasNext();) {
String key = (String) ki.next();
output.writeUTF(key);
output.writeInt(wordMap.getIndex(key));
}
CountedSet cset = (CountedSet) gramSet;
int gramCount = 0;
for (Iterator gi = gramSet.iterator();gi.hasNext();) {
NGram ngram = (NGram) gi.next();
if (cset.getCount(ngram) >= cutoff) {
int[] words = ngram.getWords();
output.writeInt(words.length);
for (int wi=0;wi<words.length;wi++) {
output.writeInt(words[wi]);
}
gramCount++;
}
else {
//System.err.println("ngram "+cset.getCount(ngram));
}
}
System.err.println("Wrote out "+gramCount+" n-grams");
output.close();
} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Value.java | Value.getAce_subtype | public String getAce_subtype() {
if (Value_Type.featOkTst && ((Value_Type)jcasType).casFeat_ace_subtype == null)
jcasType.jcas.throwFeatMissing("ace_subtype", "de.julielab.jules.types.ace.Value");
return jcasType.ll_cas.ll_getStringValue(addr, ((Value_Type)jcasType).casFeatCode_ace_subtype);} | java | public String getAce_subtype() {
if (Value_Type.featOkTst && ((Value_Type)jcasType).casFeat_ace_subtype == null)
jcasType.jcas.throwFeatMissing("ace_subtype", "de.julielab.jules.types.ace.Value");
return jcasType.ll_cas.ll_getStringValue(addr, ((Value_Type)jcasType).casFeatCode_ace_subtype);} | [
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xqbase/metric | dashboard-sql/src/main/java/com/xqbase/metric/util/Kryos.java | Kryos.deserialize | public static <T> T deserialize(byte[] b, Class<T> clazz) {
try (
Pool<Kryo, RuntimeException>.Entry entry = kryoPool.borrow();
Input input = new Input(b);
) {
T t = entry.getObject().readObject(input, clazz);
entry.setValid(true);
return t;
} catch (KryoException e) {
Log.w(e.getMessage());
return null;
}
} | java | public static <T> T deserialize(byte[] b, Class<T> clazz) {
try (
Pool<Kryo, RuntimeException>.Entry entry = kryoPool.borrow();
Input input = new Input(b);
) {
T t = entry.getObject().readObject(input, clazz);
entry.setValid(true);
return t;
} catch (KryoException e) {
Log.w(e.getMessage());
return null;
}
} | [
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BlueBrain/bluima | modules/bluima_abbreviations/src/main/java/com/wcohen/ss/DistanceLearnerFactory.java | DistanceLearnerFactory.buildArray | public static StringDistance[] buildArray(String classNames)
{
String classNamesArray[] = split(classNames);
StringDistance learners[] = new StringDistance[classNamesArray.length];
for (int i = 0; i < classNamesArray.length; i++) {
learners[i] = build(classNamesArray[i]).getDistance();
}
return learners;
} | java | public static StringDistance[] buildArray(String classNames)
{
String classNamesArray[] = split(classNames);
StringDistance learners[] = new StringDistance[classNamesArray.length];
for (int i = 0; i < classNamesArray.length; i++) {
learners[i] = build(classNamesArray[i]).getDistance();
}
return learners;
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BlueBrain/bluima | modules/bluima_abbreviations/src/main/java/com/wcohen/ss/DistanceLearnerFactory.java | DistanceLearnerFactory.main | static public void main(String[] args)
{
try {
if (args[0].indexOf('/')>0) {
System.out.println(build(args[0]));
} else {
System.out.println(build(args));
}
} catch (Exception e) {
e.printStackTrace();
}
} | java | static public void main(String[] args)
{
try {
if (args[0].indexOf('/')>0) {
System.out.println(build(args[0]));
} else {
System.out.println(build(args));
}
} catch (Exception e) {
e.printStackTrace();
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/RelatedArticleList.java | RelatedArticleList.getRelatedArticles | public FSArray getRelatedArticles() {
if (RelatedArticleList_Type.featOkTst && ((RelatedArticleList_Type)jcasType).casFeat_relatedArticles == null)
jcasType.jcas.throwFeatMissing("relatedArticles", "de.julielab.jules.types.RelatedArticleList");
return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((RelatedArticleList_Type)jcasType).casFeatCode_relatedArticles)));} | java | public FSArray getRelatedArticles() {
if (RelatedArticleList_Type.featOkTst && ((RelatedArticleList_Type)jcasType).casFeat_relatedArticles == null)
jcasType.jcas.throwFeatMissing("relatedArticles", "de.julielab.jules.types.RelatedArticleList");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/RelatedArticleList.java | RelatedArticleList.setRelatedArticles | public void setRelatedArticles(FSArray v) {
if (RelatedArticleList_Type.featOkTst && ((RelatedArticleList_Type)jcasType).casFeat_relatedArticles == null)
jcasType.jcas.throwFeatMissing("relatedArticles", "de.julielab.jules.types.RelatedArticleList");
jcasType.ll_cas.ll_setRefValue(addr, ((RelatedArticleList_Type)jcasType).casFeatCode_relatedArticles, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setRelatedArticles(FSArray v) {
if (RelatedArticleList_Type.featOkTst && ((RelatedArticleList_Type)jcasType).casFeat_relatedArticles == null)
jcasType.jcas.throwFeatMissing("relatedArticles", "de.julielab.jules.types.RelatedArticleList");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/RelatedArticleList.java | RelatedArticleList.getRelatedArticles | public RelatedArticle getRelatedArticles(int i) {
if (RelatedArticleList_Type.featOkTst && ((RelatedArticleList_Type)jcasType).casFeat_relatedArticles == null)
jcasType.jcas.throwFeatMissing("relatedArticles", "de.julielab.jules.types.RelatedArticleList");
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if (RelatedArticleList_Type.featOkTst && ((RelatedArticleList_Type)jcasType).casFeat_relatedArticles == null)
jcasType.jcas.throwFeatMissing("relatedArticles", "de.julielab.jules.types.RelatedArticleList");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/RelatedArticleList.java | RelatedArticleList.setRelatedArticles | public void setRelatedArticles(int i, RelatedArticle v) {
if (RelatedArticleList_Type.featOkTst && ((RelatedArticleList_Type)jcasType).casFeat_relatedArticles == null)
jcasType.jcas.throwFeatMissing("relatedArticles", "de.julielab.jules.types.RelatedArticleList");
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if (RelatedArticleList_Type.featOkTst && ((RelatedArticleList_Type)jcasType).casFeat_relatedArticles == null)
jcasType.jcas.throwFeatMissing("relatedArticles", "de.julielab.jules.types.RelatedArticleList");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((RelatedArticleList_Type)jcasType).casFeatCode_relatedArticles), i);
jcasType.ll_cas.ll_setRefArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((RelatedArticleList_Type)jcasType).casFeatCode_relatedArticles), i, jcasType.ll_cas.ll_getFSRef(v));} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/List.java | List.getItemList | public FSArray getItemList() {
if (List_Type.featOkTst && ((List_Type)jcasType).casFeat_itemList == null)
jcasType.jcas.throwFeatMissing("itemList", "de.julielab.jules.types.List");
return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((List_Type)jcasType).casFeatCode_itemList)));} | java | public FSArray getItemList() {
if (List_Type.featOkTst && ((List_Type)jcasType).casFeat_itemList == null)
jcasType.jcas.throwFeatMissing("itemList", "de.julielab.jules.types.List");
return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((List_Type)jcasType).casFeatCode_itemList)));} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/List.java | List.setItemList | public void setItemList(FSArray v) {
if (List_Type.featOkTst && ((List_Type)jcasType).casFeat_itemList == null)
jcasType.jcas.throwFeatMissing("itemList", "de.julielab.jules.types.List");
jcasType.ll_cas.ll_setRefValue(addr, ((List_Type)jcasType).casFeatCode_itemList, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setItemList(FSArray v) {
if (List_Type.featOkTst && ((List_Type)jcasType).casFeat_itemList == null)
jcasType.jcas.throwFeatMissing("itemList", "de.julielab.jules.types.List");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/List.java | List.getItemList | public ListItem getItemList(int i) {
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jcasType.jcas.throwFeatMissing("itemList", "de.julielab.jules.types.List");
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if (List_Type.featOkTst && ((List_Type)jcasType).casFeat_itemList == null)
jcasType.jcas.throwFeatMissing("itemList", "de.julielab.jules.types.List");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/List.java | List.setItemList | public void setItemList(int i, ListItem v) {
if (List_Type.featOkTst && ((List_Type)jcasType).casFeat_itemList == null)
jcasType.jcas.throwFeatMissing("itemList", "de.julielab.jules.types.List");
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if (List_Type.featOkTst && ((List_Type)jcasType).casFeat_itemList == null)
jcasType.jcas.throwFeatMissing("itemList", "de.julielab.jules.types.List");
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jcasType.ll_cas.ll_setRefArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((List_Type)jcasType).casFeatCode_itemList), i, jcasType.ll_cas.ll_getFSRef(v));} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.setAce_subtype | public void setAce_subtype(String v) {
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jcasType.jcas.throwFeatMissing("ace_subtype", "de.julielab.jules.types.ace.Entity");
jcasType.ll_cas.ll_setStringValue(addr, ((Entity_Type)jcasType).casFeatCode_ace_subtype, v);} | java | public void setAce_subtype(String v) {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.getAce_class | public String getAce_class() {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.setAce_class | public void setAce_class(String v) {
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jcasType.ll_cas.ll_setStringValue(addr, ((Entity_Type)jcasType).casFeatCode_ace_class, v);} | java | public void setAce_class(String v) {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.getEntity_mentions | public FSArray getEntity_mentions() {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.setEntity_mentions | public void setEntity_mentions(FSArray v) {
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jcasType.jcas.throwFeatMissing("entity_mentions", "de.julielab.jules.types.ace.Entity");
jcasType.ll_cas.ll_setRefValue(addr, ((Entity_Type)jcasType).casFeatCode_entity_mentions, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setEntity_mentions(FSArray v) {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.getEntity_mentions | public EntityMention getEntity_mentions(int i) {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.setEntity_mentions | public void setEntity_mentions(int i, EntityMention v) {
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jcasType.jcas.throwFeatMissing("entity_mentions", "de.julielab.jules.types.ace.Entity");
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.getEntity_attributes | public FSArray getEntity_attributes() {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.setEntity_attributes | public void setEntity_attributes(FSArray v) {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.getEntity_attributes | public EntityAttribute getEntity_attributes(int i) {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/ace/Entity.java | Entity.setEntity_attributes | public void setEntity_attributes(int i, EntityAttribute v) {
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/wikipedia/Link.java | Link.getTarget | public String getTarget() {
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"."
] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_typesystem/src/main/java/de/julielab/jules/types/wikipedia/Link.java#L86-L89 | train |
BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/wikipedia/Link.java | Link.setTarget | public void setTarget(String v) {
if (Link_Type.featOkTst && ((Link_Type)jcasType).casFeat_target == null)
jcasType.jcas.throwFeatMissing("target", "de.julielab.jules.types.wikipedia.Link");
jcasType.ll_cas.ll_setStringValue(addr, ((Link_Type)jcasType).casFeatCode_target, v);} | java | public void setTarget(String v) {
if (Link_Type.featOkTst && ((Link_Type)jcasType).casFeat_target == null)
jcasType.jcas.throwFeatMissing("target", "de.julielab.jules.types.wikipedia.Link");
jcasType.ll_cas.ll_setStringValue(addr, ((Link_Type)jcasType).casFeatCode_target, v);} | [
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BlueBrain/bluima | modules/bluima_bbp/src/main/java/ch/epfl/bbp/uima/ae/ExtractBrainregionsCoocurrences.java | ExtractBrainregionsCoocurrences.getLoadline | private String[] getLoadline(
Pair<BrainRegionDictTerm, BrainRegionDictTerm> pair, int pmId) {
BrainRegionDictTerm br1 = pair.getKey();
BrainRegionDictTerm br2 = pair.getValue();
return new String[] { pmId + "",//
br1.getEntityId(), br1.getBegin() + "", br1.getEnd() + "", //
br2.getEntityId(), br2.getBegin() + "", br2.getEnd() + "" };
} | java | private String[] getLoadline(
Pair<BrainRegionDictTerm, BrainRegionDictTerm> pair, int pmId) {
BrainRegionDictTerm br1 = pair.getKey();
BrainRegionDictTerm br2 = pair.getValue();
return new String[] { pmId + "",//
br1.getEntityId(), br1.getBegin() + "", br1.getEnd() + "", //
br2.getEntityId(), br2.getBegin() + "", br2.getEnd() + "" };
} | [
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_bbp/src/main/java/ch/epfl/bbp/uima/ae/ExtractBrainregionsCoocurrences.java#L135-L144 | train |
BlueBrain/bluima | modules/bluima_typesystem/src/main/java/neuroner/NeuroNER/NeurotransmitterProp.java | NeurotransmitterProp.setOntologyId | public void setOntologyId(String v) {
if (NeurotransmitterProp_Type.featOkTst && ((NeurotransmitterProp_Type)jcasType).casFeat_ontologyId == null)
jcasType.jcas.throwFeatMissing("ontologyId", "neuroner.NeuroNER.NeurotransmitterProp");
jcasType.ll_cas.ll_setStringValue(addr, ((NeurotransmitterProp_Type)jcasType).casFeatCode_ontologyId, v);} | java | public void setOntologyId(String v) {
if (NeurotransmitterProp_Type.featOkTst && ((NeurotransmitterProp_Type)jcasType).casFeat_ontologyId == null)
jcasType.jcas.throwFeatMissing("ontologyId", "neuroner.NeuroNER.NeurotransmitterProp");
jcasType.ll_cas.ll_setStringValue(addr, ((NeurotransmitterProp_Type)jcasType).casFeatCode_ontologyId, v);} | [
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_typesystem/src/main/java/neuroner/NeuroNER/NeurotransmitterProp.java#L114-L117 | train |
BlueBrain/bluima | modules/bluima_opennlp/src/main/java/ch/epfl/bbp/shaded/opennlp/tools/tokenize/TokenizerME.java | TokenizerME.tokenizePos | public Span[] tokenizePos(String d) {
Span[] tokens = split(d);
newTokens.clear();
tokProbs.clear();
for (int i = 0, il = tokens.length; i < il; i++) {
Span s = tokens[i];
String tok = d.substring(s.getStart(), s.getEnd());
// Can't tokenize single characters
if (tok.length() < 2) {
newTokens.add(s);
tokProbs.add(ONE);
}
else if (useAlphaNumericOptimization() && alphaNumeric.matcher(tok).matches()) {
newTokens.add(s);
tokProbs.add(ONE);
}
else {
int start = s.getStart();
int end = s.getEnd();
final int origStart = s.getStart();
double tokenProb = 1.0;
for (int j = origStart + 1; j < end; j++) {
double[] probs =
model.eval(cg.getContext(new ObjectIntPair(tok, j - origStart)));
String best = model.getBestOutcome(probs);
//System.err.println("TokenizerME: "+tok.substring(0,j-origStart)+"^"+tok.substring(j-origStart)+" "+best+" "+probs[model.getIndex(best)]);
tokenProb *= probs[model.getIndex(best)];
if (best.equals(TokContextGenerator.SPLIT)) {
newTokens.add(new Span(start, j));
tokProbs.add(new Double(tokenProb));
start = j;
tokenProb = 1.0;
}
}
newTokens.add(new Span(start, end));
tokProbs.add(new Double(tokenProb));
}
}
Span[] spans = new Span[newTokens.size()];
newTokens.toArray(spans);
return spans;
} | java | public Span[] tokenizePos(String d) {
Span[] tokens = split(d);
newTokens.clear();
tokProbs.clear();
for (int i = 0, il = tokens.length; i < il; i++) {
Span s = tokens[i];
String tok = d.substring(s.getStart(), s.getEnd());
// Can't tokenize single characters
if (tok.length() < 2) {
newTokens.add(s);
tokProbs.add(ONE);
}
else if (useAlphaNumericOptimization() && alphaNumeric.matcher(tok).matches()) {
newTokens.add(s);
tokProbs.add(ONE);
}
else {
int start = s.getStart();
int end = s.getEnd();
final int origStart = s.getStart();
double tokenProb = 1.0;
for (int j = origStart + 1; j < end; j++) {
double[] probs =
model.eval(cg.getContext(new ObjectIntPair(tok, j - origStart)));
String best = model.getBestOutcome(probs);
//System.err.println("TokenizerME: "+tok.substring(0,j-origStart)+"^"+tok.substring(j-origStart)+" "+best+" "+probs[model.getIndex(best)]);
tokenProb *= probs[model.getIndex(best)];
if (best.equals(TokContextGenerator.SPLIT)) {
newTokens.add(new Span(start, j));
tokProbs.add(new Double(tokenProb));
start = j;
tokenProb = 1.0;
}
}
newTokens.add(new Span(start, end));
tokProbs.add(new Double(tokenProb));
}
}
Span[] spans = new Span[newTokens.size()];
newTokens.toArray(spans);
return spans;
} | [
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@param d The string to be tokenized.
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BlueBrain/bluima | modules/bluima_opennlp/src/main/java/ch/epfl/bbp/shaded/opennlp/tools/tokenize/TokenizerME.java | TokenizerME.tokenize | public String[] tokenize(String s) {
Span[] spans = tokenizePos(s);
String[] toks = new String[spans.length];
for (int ti = 0, tl = toks.length; ti < tl; ti++) {
toks[ti] = s.substring(spans[ti].getStart(), spans[ti].getEnd());
}
return toks;
} | java | public String[] tokenize(String s) {
Span[] spans = tokenizePos(s);
String[] toks = new String[spans.length];
for (int ti = 0, tl = toks.length; ti < tl; ti++) {
toks[ti] = s.substring(spans[ti].getStart(), spans[ti].getEnd());
}
return toks;
} | [
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@param s The string to be tokenized.
@return A string array containing individual tokens as elements. | [
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_opennlp/src/main/java/ch/epfl/bbp/shaded/opennlp/tools/tokenize/TokenizerME.java#L159-L166 | train |
BlueBrain/bluima | modules/bluima_banner/src/main/java/banner/Sentence.java | Sentence.getMention | private Mention getMention(int tokenIndex)
{
Mention mention = null;
for (Mention mention2 : mentions)
{
if (mention2.contains(tokenIndex))
if (mention == null)
mention = mention2;
else
throw new IllegalArgumentException();
}
return mention;
} | java | private Mention getMention(int tokenIndex)
{
Mention mention = null;
for (Mention mention2 : mentions)
{
if (mention2.contains(tokenIndex))
if (mention == null)
mention = mention2;
else
throw new IllegalArgumentException();
}
return mention;
} | [
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BlueBrain/bluima | modules/bluima_opennlp/src/main/java/ch/epfl/bbp/shaded/opennlp/tools/tokenize/TokContextGenerator.java | TokContextGenerator.getContext | public String[] getContext(Object o) {
String sb = (String)((ObjectIntPair)o).a;
int id = ((ObjectIntPair)o).b;
List preds = new ArrayList();
preds.add("p="+sb.substring(0,id));
preds.add("s="+sb.substring(id));
if (id>0) {
addCharPreds("p1", sb.charAt(id-1), preds);
if (id>1) {
addCharPreds("p2", sb.charAt(id-2), preds);
preds.add("p21="+sb.charAt(id-2)+sb.charAt(id-1));
}
else {
preds.add("p2=bok");
}
preds.add("p1f1="+sb.charAt(id-1)+sb.charAt(id));
}
else {
preds.add("p1=bok");
}
addCharPreds("f1",sb.charAt(id), preds);
if (id+1 < sb.length()) {
addCharPreds("f2", sb.charAt(id+1), preds);
preds.add("f12="+sb.charAt(id)+sb.charAt(id+1));
}
else {
preds.add("f2=bok");
}
if (sb.charAt(0) == '&' && sb.charAt(sb.length()-1) == ';') {
preds.add("cc");//character code
}
String[] context = new String[preds.size()];
preds.toArray(context);
return context;
} | java | public String[] getContext(Object o) {
String sb = (String)((ObjectIntPair)o).a;
int id = ((ObjectIntPair)o).b;
List preds = new ArrayList();
preds.add("p="+sb.substring(0,id));
preds.add("s="+sb.substring(id));
if (id>0) {
addCharPreds("p1", sb.charAt(id-1), preds);
if (id>1) {
addCharPreds("p2", sb.charAt(id-2), preds);
preds.add("p21="+sb.charAt(id-2)+sb.charAt(id-1));
}
else {
preds.add("p2=bok");
}
preds.add("p1f1="+sb.charAt(id-1)+sb.charAt(id));
}
else {
preds.add("p1=bok");
}
addCharPreds("f1",sb.charAt(id), preds);
if (id+1 < sb.length()) {
addCharPreds("f2", sb.charAt(id+1), preds);
preds.add("f12="+sb.charAt(id)+sb.charAt(id+1));
}
else {
preds.add("f2=bok");
}
if (sb.charAt(0) == '&' && sb.charAt(sb.length()-1) == ';') {
preds.add("cc");//character code
}
String[] context = new String[preds.size()];
preds.toArray(context);
return context;
} | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/muc7/TIMEX.java | TIMEX.getMin | public String getMin() {
if (TIMEX_Type.featOkTst && ((TIMEX_Type)jcasType).casFeat_min == null)
jcasType.jcas.throwFeatMissing("min", "de.julielab.jules.types.muc7.TIMEX");
return jcasType.ll_cas.ll_getStringValue(addr, ((TIMEX_Type)jcasType).casFeatCode_min);} | java | public String getMin() {
if (TIMEX_Type.featOkTst && ((TIMEX_Type)jcasType).casFeat_min == null)
jcasType.jcas.throwFeatMissing("min", "de.julielab.jules.types.muc7.TIMEX");
return jcasType.ll_cas.ll_getStringValue(addr, ((TIMEX_Type)jcasType).casFeatCode_min);} | [
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@generated
@return value of the feature | [
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BlueBrain/bluima | modules/bluima_utils/src/main/java/ch/epfl/bbp/uima/utils/ExtractAbbrev.java | ExtractAbbrev.extractAbbrPairs | public Map<String, String> extractAbbrPairs(String inputText, boolean isFileName) {
if (isFileName) {
return extractAbbrPairs(inputText);
}
StringReader sr = new StringReader(inputText);
return extractAbbrPairs(sr);
} | java | public Map<String, String> extractAbbrPairs(String inputText, boolean isFileName) {
if (isFileName) {
return extractAbbrPairs(inputText);
}
StringReader sr = new StringReader(inputText);
return extractAbbrPairs(sr);
} | [
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Method added by University of Colorado, Center for Computational Pharmacology, 08/19/08
@param inputText
@return | [
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BlueBrain/bluima | modules/bluima_xml/src/main/java/ch/epfl/bbp/uima/xml/pubmed/Author.java | Author.getLastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName | public List<java.lang.Object> getLastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName() {
if (lastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName == null) {
lastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName = new ArrayList<java.lang.Object>();
}
return this.lastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName;
} | java | public List<java.lang.Object> getLastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName() {
if (lastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName == null) {
lastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName = new ArrayList<java.lang.Object>();
}
return this.lastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName;
} | [
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"lastNameOrForeNameOrInitialsOr... | Gets the value of the lastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName property.
<p>
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a <CODE>set</CODE> method for the lastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName property.
<p>
For example, to add a new item, do as follows:
<pre>
getLastNameOrForeNameOrInitialsOrSuffixOrNameIDOrCollectiveName().add(newItem);
</pre>
<p>
Objects of the following type(s) are allowed in the list
{@link LastName }
{@link ForeName }
{@link Initials }
{@link Suffix }
{@link NameID }
{@link CollectiveName } | [
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_xml/src/main/java/ch/epfl/bbp/uima/xml/pubmed/Author.java#L105-L110 | train |
BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java | CellTypeProteinConcentration.getProtein | public Protein getProtein() {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_protein == null)
jcasType.jcas.throwFeatMissing("protein", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
return (Protein)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_protein)));} | java | public Protein getProtein() {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_protein == null)
jcasType.jcas.throwFeatMissing("protein", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
return (Protein)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_protein)));} | [
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java#L86-L89 | train |
BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java | CellTypeProteinConcentration.setProtein | public void setProtein(Protein v) {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_protein == null)
jcasType.jcas.throwFeatMissing("protein", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
jcasType.ll_cas.ll_setRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_protein, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setProtein(Protein v) {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_protein == null)
jcasType.jcas.throwFeatMissing("protein", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
jcasType.ll_cas.ll_setRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_protein, jcasType.ll_cas.ll_getFSRef(v));} | [
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... | setter for protein - sets
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java#L95-L98 | train |
BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java | CellTypeProteinConcentration.getConcentration | public Concentration getConcentration() {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_concentration == null)
jcasType.jcas.throwFeatMissing("concentration", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
return (Concentration)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_concentration)));} | java | public Concentration getConcentration() {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_concentration == null)
jcasType.jcas.throwFeatMissing("concentration", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
return (Concentration)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_concentration)));} | [
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@generated
@return value of the feature | [
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java#L108-L111 | train |
BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java | CellTypeProteinConcentration.setConcentration | public void setConcentration(Concentration v) {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_concentration == null)
jcasType.jcas.throwFeatMissing("concentration", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
jcasType.ll_cas.ll_setRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_concentration, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setConcentration(Concentration v) {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_concentration == null)
jcasType.jcas.throwFeatMissing("concentration", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
jcasType.ll_cas.ll_setRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_concentration, jcasType.ll_cas.ll_getFSRef(v));} | [
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@param v value to set into the feature | [
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BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java | CellTypeProteinConcentration.getCelltype | public CellType getCelltype() {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_celltype == null)
jcasType.jcas.throwFeatMissing("celltype", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
return (CellType)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_celltype)));} | java | public CellType getCelltype() {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_celltype == null)
jcasType.jcas.throwFeatMissing("celltype", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
return (CellType)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_celltype)));} | [
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".... | getter for celltype - gets
@generated
@return value of the feature | [
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"-",
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java#L130-L133 | train |
BlueBrain/bluima | modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java | CellTypeProteinConcentration.setCelltype | public void setCelltype(CellType v) {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_celltype == null)
jcasType.jcas.throwFeatMissing("celltype", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
jcasType.ll_cas.ll_setRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_celltype, jcasType.ll_cas.ll_getFSRef(v));} | java | public void setCelltype(CellType v) {
if (CellTypeProteinConcentration_Type.featOkTst && ((CellTypeProteinConcentration_Type)jcasType).casFeat_celltype == null)
jcasType.jcas.throwFeatMissing("celltype", "ch.epfl.bbp.uima.types.CellTypeProteinConcentration");
jcasType.ll_cas.ll_setRefValue(addr, ((CellTypeProteinConcentration_Type)jcasType).casFeatCode_celltype, jcasType.ll_cas.ll_getFSRef(v));} | [
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".... | setter for celltype - sets
@generated
@param v value to set into the feature | [
"setter",
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"celltype",
"-",
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_typesystem/src/main/java/ch/epfl/bbp/uima/types/CellTypeProteinConcentration.java#L139-L142 | train |
BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/DependencyRelation.java | DependencyRelation.getProjective | public boolean getProjective() {
if (DependencyRelation_Type.featOkTst && ((DependencyRelation_Type)jcasType).casFeat_projective == null)
jcasType.jcas.throwFeatMissing("projective", "de.julielab.jules.types.DependencyRelation");
return jcasType.ll_cas.ll_getBooleanValue(addr, ((DependencyRelation_Type)jcasType).casFeatCode_projective);} | java | public boolean getProjective() {
if (DependencyRelation_Type.featOkTst && ((DependencyRelation_Type)jcasType).casFeat_projective == null)
jcasType.jcas.throwFeatMissing("projective", "de.julielab.jules.types.DependencyRelation");
return jcasType.ll_cas.ll_getBooleanValue(addr, ((DependencyRelation_Type)jcasType).casFeatCode_projective);} | [
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"throwFeatMi... | getter for projective - gets The dependency relations can be projective or not, C
@generated
@return value of the feature | [
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_typesystem/src/main/java/de/julielab/jules/types/DependencyRelation.java#L107-L110 | train |
BlueBrain/bluima | modules/bluima_typesystem/src/main/java/de/julielab/jules/types/DependencyRelation.java | DependencyRelation.setProjective | public void setProjective(boolean v) {
if (DependencyRelation_Type.featOkTst && ((DependencyRelation_Type)jcasType).casFeat_projective == null)
jcasType.jcas.throwFeatMissing("projective", "de.julielab.jules.types.DependencyRelation");
jcasType.ll_cas.ll_setBooleanValue(addr, ((DependencyRelation_Type)jcasType).casFeatCode_projective, v);} | java | public void setProjective(boolean v) {
if (DependencyRelation_Type.featOkTst && ((DependencyRelation_Type)jcasType).casFeat_projective == null)
jcasType.jcas.throwFeatMissing("projective", "de.julielab.jules.types.DependencyRelation");
jcasType.ll_cas.ll_setBooleanValue(addr, ((DependencyRelation_Type)jcasType).casFeatCode_projective, v);} | [
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".... | setter for projective - sets The dependency relations can be projective or not, C
@generated
@param v value to set into the feature | [
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] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_typesystem/src/main/java/de/julielab/jules/types/DependencyRelation.java#L116-L119 | train |
BlueBrain/bluima | modules/bluima_xml/src/main/java/ch/epfl/bbp/uima/xml/archivearticle3/RefList.java | RefList.getAddressOrAlternativesOrArray | public java.util.List<Object> getAddressOrAlternativesOrArray() {
if (addressOrAlternativesOrArray == null) {
addressOrAlternativesOrArray = new ArrayList<Object>();
}
return this.addressOrAlternativesOrArray;
} | java | public java.util.List<Object> getAddressOrAlternativesOrArray() {
if (addressOrAlternativesOrArray == null) {
addressOrAlternativesOrArray = new ArrayList<Object>();
}
return this.addressOrAlternativesOrArray;
} | [
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"(",... | Gets the value of the addressOrAlternativesOrArray property.
<p>
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a <CODE>set</CODE> method for the addressOrAlternativesOrArray property.
<p>
For example, to add a new item, do as follows:
<pre>
getAddressOrAlternativesOrArray().add(newItem);
</pre>
<p>
Objects of the following type(s) are allowed in the list
{@link Address }
{@link Alternatives }
{@link Array }
{@link BoxedText }
{@link ChemStructWrap }
{@link Fig }
{@link FigGroup }
{@link Graphic }
{@link Media }
{@link Preformat }
{@link SupplementaryMaterial }
{@link TableWrap }
{@link TableWrapGroup }
{@link DispFormula }
{@link DispFormulaGroup }
{@link P }
{@link DefList }
{@link ch.epfl.bbp.uima.xml.archivearticle3.List }
{@link TexMath }
{@link MathType }
{@link RelatedArticle }
{@link RelatedObject }
{@link Ack }
{@link DispQuote }
{@link Speech }
{@link Statement }
{@link VerseGroup }
{@link X }
{@link Ref } | [
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"addressOrAlternativesOrArray",
"property",
"."
] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_xml/src/main/java/ch/epfl/bbp/uima/xml/archivearticle3/RefList.java#L236-L241 | train |
BlueBrain/bluima | modules/bluima_xml/src/main/java/ch/epfl/bbp/uima/xml/archivearticle3/RefList.java | RefList.getRefList | public java.util.List<RefList> getRefList() {
if (refList == null) {
refList = new ArrayList<RefList>();
}
return this.refList;
} | java | public java.util.List<RefList> getRefList() {
if (refList == null) {
refList = new ArrayList<RefList>();
}
return this.refList;
} | [
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"refList... | Gets the value of the refList property.
<p>
This accessor method returns a reference to the live list,
not a snapshot. Therefore any modification you make to the
returned list will be present inside the JAXB object.
This is why there is not a <CODE>set</CODE> method for the refList property.
<p>
For example, to add a new item, do as follows:
<pre>
getRefList().add(newItem);
</pre>
<p>
Objects of the following type(s) are allowed in the list
{@link RefList } | [
"Gets",
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"."
] | 793ea3f46761dce72094e057a56cddfa677156ae | https://github.com/BlueBrain/bluima/blob/793ea3f46761dce72094e057a56cddfa677156ae/modules/bluima_xml/src/main/java/ch/epfl/bbp/uima/xml/archivearticle3/RefList.java#L265-L270 | train |
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