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fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/dependency/ExtendedPathView.java
ExtendedPathView.getNextNode
private DependencyTreeNode getNextNode(DependencyRelation prev, DependencyRelation cur) { return (prev.headNode() == cur.headNode() || prev.dependentNode() == cur.headNode()) ? cur.dependentNode() : cur.headNode(); }
java
private DependencyTreeNode getNextNode(DependencyRelation prev, DependencyRelation cur) { return (prev.headNode() == cur.headNode() || prev.dependentNode() == cur.headNode()) ? cur.dependentNode() : cur.headNode(); }
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Given the nodes in the previous relation, determine which of the nodes in the next relation is new and return that. @param prev the dependency relation that was previously seen in the path @param cur the current dependency relation
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/dependency/ExtendedPathView.java#L89-L95
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/AtomicGrowingSparseMatrix.java
AtomicGrowingSparseMatrix.toArray
private static double[] toArray(DoubleVector v, int length) { double[] arr = new double[length]; for (int i = 0; i < arr.length; ++i) { arr[i] = v.get(i); } return arr; }
java
private static double[] toArray(DoubleVector v, int length) { double[] arr = new double[length]; for (int i = 0; i < arr.length; ++i) { arr[i] = v.get(i); } return arr; }
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Returns an array of the specified length using the data in the provided vector. This method allows row vectors to be converted to arrays based on the size of the matrix at the time of the call, thereby prevent changes in length due to external vector modifications.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/AtomicGrowingSparseMatrix.java#L386-L392
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/evaluation/RubensteinGoodenoughWordSimilarityEvaluation.java
RubensteinGoodenoughWordSimilarityEvaluation.parse
private Collection<WordSimilarity> parse(File word353file) { Collection<WordSimilarity> pairs = new LinkedList<WordSimilarity>(); try { BufferedReader br = new BufferedReader(new FileReader(word353file)); // skip the first line br.readLine(); ...
java
private Collection<WordSimilarity> parse(File word353file) { Collection<WordSimilarity> pairs = new LinkedList<WordSimilarity>(); try { BufferedReader br = new BufferedReader(new FileReader(word353file)); // skip the first line br.readLine(); ...
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Parses the WordSimilarity353 file and returns the set of judgements.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/evaluation/RubensteinGoodenoughWordSimilarityEvaluation.java#L81-L110
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/MatrixFile.java
MatrixFile.iterator
public Iterator<MatrixEntry> iterator() { try { return MatrixIO.getMatrixFileIterator(matrixFile, format); } catch (IOException ioe) { throw new IOError(ioe); } }
java
public Iterator<MatrixEntry> iterator() { try { return MatrixIO.getMatrixFileIterator(matrixFile, format); } catch (IOException ioe) { throw new IOError(ioe); } }
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Returns an iterator over all the entries in the matrix. The order in which entries are returned is format-specific; no guarantee is provided about the ordering.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/MatrixFile.java#L94-L100
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/StaticSemanticSpace.java
StaticSemanticSpace.loadFromFormat
private void loadFromFormat(InputStream is, SSpaceFormat format) throws IOException { // NOTE: Use a LinkedHashMap here because this will ensure that the // words are returned in the same row-order as the matrix. This // generates better disk I/O behavior for accessing the matrix si...
java
private void loadFromFormat(InputStream is, SSpaceFormat format) throws IOException { // NOTE: Use a LinkedHashMap here because this will ensure that the // words are returned in the same row-order as the matrix. This // generates better disk I/O behavior for accessing the matrix si...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/StaticSemanticSpace.java#L161-L196
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/SamplingSubgraphIterator.java
SamplingSubgraphIterator.next
public Graph<T> next() { if (nextSubgraphs.isEmpty()) throw new NoSuchElementException(); Graph<T> next = nextSubgraphs.poll(); // If we've exhausted the current set of subgraphs, queue up more of // them, generated from the remaining vertices if (nextSubgra...
java
public Graph<T> next() { if (nextSubgraphs.isEmpty()) throw new NoSuchElementException(); Graph<T> next = nextSubgraphs.poll(); // If we've exhausted the current set of subgraphs, queue up more of // them, generated from the remaining vertices if (nextSubgra...
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Returns the next subgraph from the backing graph.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/SamplingSubgraphIterator.java#L281-L291
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/ri/RandomIndexing.java
RandomIndexing.add
private static void add(IntegerVector semantics, TernaryVector index) { // Lock on the semantic vector to avoid a race condition with another // thread updating its semantics. Use the vector to avoid a class-level // lock, which would limit the concurrency. synchronized(semantics) { ...
java
private static void add(IntegerVector semantics, TernaryVector index) { // Lock on the semantic vector to avoid a race condition with another // thread updating its semantics. Use the vector to avoid a class-level // lock, which would limit the concurrency. synchronized(semantics) { ...
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Atomically adds the values of the index vector to the semantic vector. This is a special case addition operation that only iterates over the non-zero values of the index vector.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/ri/RandomIndexing.java#L676-L686
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/dependency/SimpleDependencyPath.java
SimpleDependencyPath.copy
public SimpleDependencyPath copy() { SimpleDependencyPath copy = new SimpleDependencyPath(); copy.path.addAll(path); copy.nodes.addAll(nodes); return copy; }
java
public SimpleDependencyPath copy() { SimpleDependencyPath copy = new SimpleDependencyPath(); copy.path.addAll(path); copy.nodes.addAll(nodes); return copy; }
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/dependency/SimpleDependencyPath.java#L133-L138
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/dependency/SimpleDependencyPath.java
SimpleDependencyPath.extend
public SimpleDependencyPath extend(DependencyRelation relation) { SimpleDependencyPath copy = copy(); // Figure out which node is at the end of our path, and then add the new // node to the end of our nodes DependencyTreeNode last = last(); copy.nodes.add((relation.headNode().eq...
java
public SimpleDependencyPath extend(DependencyRelation relation) { SimpleDependencyPath copy = copy(); // Figure out which node is at the end of our path, and then add the new // node to the end of our nodes DependencyTreeNode last = last(); copy.nodes.add((relation.headNode().eq...
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Returns a copy of this dependency path that has the provided related appended to the end of its path sequence.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/dependency/SimpleDependencyPath.java#L144-L153
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/Matrices.java
Matrices.create
public static Matrix create(int rows, int cols, boolean isDense) { // Estimate the number of bytes that the matrix will take up based on // its maximum dimensions and its sparsity. long size = (isDense) ? (long)rows * (long)cols * BYTES_PER_DOUBLE : (long)(rows * (long)co...
java
public static Matrix create(int rows, int cols, boolean isDense) { // Estimate the number of bytes that the matrix will take up based on // its maximum dimensions and its sparsity. long size = (isDense) ? (long)rows * (long)cols * BYTES_PER_DOUBLE : (long)(rows * (long)co...
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Creates a matrix of the given dimensions and selects the matrix implementation by considering the size and density of the new matrix with respect to the available memory for the JVM. @param rows the number of rows in the matrix @param cols the number of columns in the matrix @param isDense whether the returned matrix ...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/Matrices.java#L102-L134
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/Matrices.java
Matrices.copy
public static Matrix copy(Matrix matrix) { Matrix copiedMatrix = null; if (matrix instanceof SparseMatrix) copiedMatrix = Matrices.create( matrix.rows(), matrix.columns(), Type.SPARSE_IN_MEMORY); else copiedMatrix = Matrices.create( ...
java
public static Matrix copy(Matrix matrix) { Matrix copiedMatrix = null; if (matrix instanceof SparseMatrix) copiedMatrix = Matrices.create( matrix.rows(), matrix.columns(), Type.SPARSE_IN_MEMORY); else copiedMatrix = Matrices.create( ...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/Matrices.java#L148-L157
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/text/WordReplacementIterator.java
WordReplacementIterator.next
public String next() { if (next == null) throw new NoSuchElementException(); String replacement = replacementMap.get(next); replacement = (replacement == null) ? next : replacement; advance(); return replacement; }
java
public String next() { if (next == null) throw new NoSuchElementException(); String replacement = replacementMap.get(next); replacement = (replacement == null) ? next : replacement; advance(); return replacement; }
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/text/WordReplacementIterator.java#L84-L91
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/ColorGenerator.java
ColorGenerator.next
public Color next() { int r = rand.nextInt(256); int g = rand.nextInt(256); int b = rand.nextInt(256); return (seed == null) ? new Color(r, g, b) : new Color((r + seed.getRed()) / 2, (g + seed.getGreen()) / 2, (b + s...
java
public Color next() { int r = rand.nextInt(256); int g = rand.nextInt(256); int b = rand.nextInt(256); return (seed == null) ? new Color(r, g, b) : new Color((r + seed.getRed()) / 2, (g + seed.getGreen()) / 2, (b + s...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/ColorGenerator.java#L61-L70
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/text/IteratorFactory.java
IteratorFactory.setProperties
public static synchronized void setProperties(Properties props) { wordLimit = Integer.parseInt( props.getProperty(TOKEN_COUNT_LIMIT_PROPERTY, "0")); String filterProp = props.getProperty(TOKEN_FILTER_PROPERTY); filter = (filterProp != null) ? TokenFilter...
java
public static synchronized void setProperties(Properties props) { wordLimit = Integer.parseInt( props.getProperty(TOKEN_COUNT_LIMIT_PROPERTY, "0")); String filterProp = props.getProperty(TOKEN_FILTER_PROPERTY); filter = (filterProp != null) ? TokenFilter...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/text/IteratorFactory.java#L246-L309
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/text/IteratorFactory.java
IteratorFactory.getBaseIterator
private static Iterator<String> getBaseIterator(BufferedReader reader, boolean keepOrdering) { // The final iterator is how the stream will be tokenized after all the // tokenizing options have been applied. This value is iteratively set // a...
java
private static Iterator<String> getBaseIterator(BufferedReader reader, boolean keepOrdering) { // The final iterator is how the stream will be tokenized after all the // tokenizing options have been applied. This value is iteratively set // a...
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Returns an iterator for the basic tokenization of the stream before filtering has been applied to the tokens. @param reader a reader whose contents are to be tokenized @return an iterator over the tokens in the stream
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/text/IteratorFactory.java#L419-L471
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/isa/IncrementalSemanticAnalysis.java
IncrementalSemanticAnalysis.updateSemantics
@SuppressWarnings("unchecked") private void updateSemantics(SemanticVector toUpdate, String cooccurringWord, TernaryVector iv) { SemanticVector prevWordSemantics = getSemanticVector(cooccurringWord); Integer occurrences = wor...
java
@SuppressWarnings("unchecked") private void updateSemantics(SemanticVector toUpdate, String cooccurringWord, TernaryVector iv) { SemanticVector prevWordSemantics = getSemanticVector(cooccurringWord); Integer occurrences = wor...
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Update the semantics using the weighed combination of the semantics of the co-occurring word and the provided index vector. Note that the index vector is provided so that the caller can permute it as necessary. @param toUpdate the semantics to be updated @param cooccurringWord the word that is co-occurring @param iv ...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/isa/IncrementalSemanticAnalysis.java#L622-L640
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/isa/IncrementalSemanticAnalysis.java
IncrementalSemanticAnalysis.add
private static void add(DoubleVector semantics, TernaryVector index, double percentage) { for (int p : index.positiveDimensions()) semantics.add(p, percentage); for (int n : index.negativeDimensions()) semantics.add(n, -perc...
java
private static void add(DoubleVector semantics, TernaryVector index, double percentage) { for (int p : index.positiveDimensions()) semantics.add(p, percentage); for (int n : index.negativeDimensions()) semantics.add(n, -perc...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/isa/IncrementalSemanticAnalysis.java#L652-L659
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/index/RandomOrthogonalVectorGenerator.java
RandomOrthogonalVectorGenerator.generateInitialVector
private static DoubleVector generateInitialVector(int length, double mean, double std) { DoubleVector vector = new DenseVector(length); for (int i = 0; i < length; ++i) { double v = RA...
java
private static DoubleVector generateInitialVector(int length, double mean, double std) { DoubleVector vector = new DenseVector(length); for (int i = 0; i < length; ++i) { double v = RA...
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Generates a simple random vector.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/index/RandomOrthogonalVectorGenerator.java#L188-L198
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/index/RandomOrthogonalVectorGenerator.java
RandomOrthogonalVectorGenerator.dotProduct
private static double dotProduct(DoubleVector u, DoubleVector v) { double dot = 0; for (int i = 0; i < u.length(); ++i) { double a = u.get(i); double b = v.get(i); dot += u.get(i) * v.get(i); } return dot; }
java
private static double dotProduct(DoubleVector u, DoubleVector v) { double dot = 0; for (int i = 0; i < u.length(); ++i) { double a = u.get(i); double b = v.get(i); dot += u.get(i) * v.get(i); } return dot; }
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Compute the dot product between two vectors.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/index/RandomOrthogonalVectorGenerator.java#L203-L212
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/WeightedDirectedMultigraph.java
WeightedDirectedMultigraph.updateTypeCounts
private void updateTypeCounts(T type, int delta) { if (!typeCounts.containsKey(type)) { assert delta > 0 : "removing edge type that was not originally present"; typeCounts.put(type, delta); } else { int curCount = typeCounts.get(type); ...
java
private void updateTypeCounts(T type, int delta) { if (!typeCounts.containsKey(type)) { assert delta > 0 : "removing edge type that was not originally present"; typeCounts.put(type, delta); } else { int curCount = typeCounts.get(type); ...
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Updates how many edges have this type in the graph
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/WeightedDirectedMultigraph.java#L575-L591
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/MatlabSparseMatrixBuilder.java
MatlabSparseMatrixBuilder.getTempMatrixFile
private static File getTempMatrixFile() { File tmp = null; try { tmp = File.createTempFile("matlab-sparse-matrix", ".dat"); } catch (IOException ioe) { throw new IOError(ioe); } tmp.deleteOnExit(); return tmp; }
java
private static File getTempMatrixFile() { File tmp = null; try { tmp = File.createTempFile("matlab-sparse-matrix", ".dat"); } catch (IOException ioe) { throw new IOError(ioe); } tmp.deleteOnExit(); return tmp; }
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Returns a temporary file that will be deleted on JVM exit. ' @return a temporary file used to store a matrix
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/MatlabSparseMatrixBuilder.java#L142-L151
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/dri/DependencyRandomIndexing.java
DependencyRandomIndexing.getSemanticVector
private IntegerVector getSemanticVector(String word) { IntegerVector v = wordSpace.get(word); if (v == null) { // lock on the word in case multiple threads attempt to add it at // once synchronized(this) { // recheck in case another thread added it whi...
java
private IntegerVector getSemanticVector(String word) { IntegerVector v = wordSpace.get(word); if (v == null) { // lock on the word in case multiple threads attempt to add it at // once synchronized(this) { // recheck in case another thread added it whi...
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Returns the current semantic vector for the provided word. If the word is not currently in the semantic space, a vector is added for it and returned. @param word a word that requires a semantic vector @return the {@code SemanticVector} representing {@code word}
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/dri/DependencyRandomIndexing.java#L486-L502
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/primitive/PrimitiveCollections.java
PrimitiveCollections.shuffle
public static void shuffle(int[] arr, Random rand) { int size = arr.length; for (int i = size; i > 1; i--) { int tmp = arr[i-1]; int r = rand.nextInt(i); arr[i-1] = arr[r]; arr[r] = tmp; } }
java
public static void shuffle(int[] arr, Random rand) { int size = arr.length; for (int i = size; i > 1; i--) { int tmp = arr[i-1]; int r = rand.nextInt(i); arr[i-1] = arr[r]; arr[r] = tmp; } }
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Randomly shuffles the contents of the provided array
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/primitive/PrimitiveCollections.java#L62-L70
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/isomorphism/TypedIsomorphicGraphCounter.java
TypedIsomorphicGraphCounter.addInitial
private void addInitial(G g) { Set<T> typeCounts = g.edgeTypes(); LinkedList<Map.Entry<G,Integer>> graphs = typesToGraphs.get(typeCounts); if (graphs == null) { graphs = new LinkedList<Map.Entry<G,Integer>>(); typesToGraphs.put(new HashSet<T>(typeCounts), graphs); ...
java
private void addInitial(G g) { Set<T> typeCounts = g.edgeTypes(); LinkedList<Map.Entry<G,Integer>> graphs = typesToGraphs.get(typeCounts); if (graphs == null) { graphs = new LinkedList<Map.Entry<G,Integer>>(); typesToGraphs.put(new HashSet<T>(typeCounts), graphs); ...
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Adds an initial set of valid motifs to this counter with no counts. This method enables the fixed-motif constructor to initialize the set of valid motifs prior to counting.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/isomorphism/TypedIsomorphicGraphCounter.java#L124-L133
train
fozziethebeat/S-Space
opt/src/main/java/edu/ucla/sspace/tools/FanmodTool.java
FanmodTool.usage
private static void usage(ArgOptions options) { System.out.println( "Fanmod 1.0, " + "usage: java -jar fanmod.jar [options] input.graph output.serialized \n\n" + options.prettyPrint() + "\nThe edge file format is:\n" + " vertex1 vertex2 [edge_label]...
java
private static void usage(ArgOptions options) { System.out.println( "Fanmod 1.0, " + "usage: java -jar fanmod.jar [options] input.graph output.serialized \n\n" + options.prettyPrint() + "\nThe edge file format is:\n" + " vertex1 vertex2 [edge_label]...
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Prints the options and supported commands used by this program. @param options the options supported by the system
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/opt/src/main/java/edu/ucla/sspace/tools/FanmodTool.java#L335-L343
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/MatrixEntropy.java
MatrixEntropy.entropy
private static double entropy(double count, double sum) { double p = count / sum; return Math.log(p) * p; }
java
private static double entropy(double count, double sum) { double p = count / sum; return Math.log(p) * p; }
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Computes the entropy of a raw count given a particular summation using the natural log.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/MatrixEntropy.java#L92-L95
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/IndexedCounter.java
IndexedCounter.getCount
public int getCount(T obj) { int objIndex = (allowNewIndices) ? objectIndices.index(obj) : objectIndices.find(obj); return (objIndex < 0) ? 0 : indexToCount.get(objIndex); }
java
public int getCount(T obj) { int objIndex = (allowNewIndices) ? objectIndices.index(obj) : objectIndices.find(obj); return (objIndex < 0) ? 0 : indexToCount.get(objIndex); }
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Returns the number of times the specified object has been seen by this counter.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/IndexedCounter.java#L171-L176
train
fozziethebeat/S-Space
src/main/java/jnt/FFT/Factorize.java
Factorize.log2
public static int log2 (int n){ int log = 0; for(int k=1; k < n; k *= 2, log++); if (n != (1 << log)) return -1 ; /* n is not a power of 2 */ return log; }
java
public static int log2 (int n){ int log = 0; for(int k=1; k < n; k *= 2, log++); if (n != (1 << log)) return -1 ; /* n is not a power of 2 */ return log; }
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Return the integer log, base 2, of n, or -1 if n is not an integral power of 2.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/jnt/FFT/Factorize.java#L62-L69
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/vector/VectorMath.java
VectorMath.sum
public static double sum(DoubleVector v) { double sum = 0; if (v instanceof SparseVector) { for (int nz : ((SparseVector)v).getNonZeroIndices()) sum += v.get(nz); } else { int len = v.length(); for (int i = 0; i < len; ++i) ...
java
public static double sum(DoubleVector v) { double sum = 0; if (v instanceof SparseVector) { for (int nz : ((SparseVector)v).getNonZeroIndices()) sum += v.get(nz); } else { int len = v.length(); for (int i = 0; i < len; ++i) ...
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Sums the values in the vector, returning the result.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/vector/VectorMath.java#L740-L752
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/LocalityPreservingProjection.java
LocalityPreservingProjection.execute
private static void execute(File dataMatrixFile, File affMatrixFile, int dims, File outputMatrix) throws IOException { // Decide whether to use Matlab or Octave if (isMatlabAvailable()) invokeMatlab(dataMatrixFile,...
java
private static void execute(File dataMatrixFile, File affMatrixFile, int dims, File outputMatrix) throws IOException { // Decide whether to use Matlab or Octave if (isMatlabAvailable()) invokeMatlab(dataMatrixFile,...
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Executes the LPP script, thereby computing the locality preserving projection of the data matrix to the specified number of dimension, using the affinity matrix to determine locality. The result is written to the output file. @param dataMatrixFile a file containing the original data points to be projected @param affM...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/LocalityPreservingProjection.java#L383-L396
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/LocalityPreservingProjection.java
LocalityPreservingProjection.invokeMatlab
private static void invokeMatlab(File dataMatrixFile, File affMatrixFile, int dimensions, File outputFile) throws IOException { String commandLine = "matlab -nodisplay -nosplash -nojvm"; LOGGER.fine(commandLine); Process matlab = Runtime.getRun...
java
private static void invokeMatlab(File dataMatrixFile, File affMatrixFile, int dimensions, File outputFile) throws IOException { String commandLine = "matlab -nodisplay -nosplash -nojvm"; LOGGER.fine(commandLine); Process matlab = Runtime.getRun...
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Invokes Matlab to run the LPP script
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/LocalityPreservingProjection.java#L401-L459
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/LocalityPreservingProjection.java
LocalityPreservingProjection.invokeOctave
private static void invokeOctave(File dataMatrixFile, File affMatrixFile, int dimensions, File outputFile) throws IOException { // Create the octave file for executing File octaveFile = File.createTempFile("octave-LPP",".m"); // Create the Matl...
java
private static void invokeOctave(File dataMatrixFile, File affMatrixFile, int dimensions, File outputFile) throws IOException { // Create the octave file for executing File octaveFile = File.createTempFile("octave-LPP",".m"); // Create the Matl...
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Invokes Octave to run the LPP script
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/LocalityPreservingProjection.java#L464-L524
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/LoggerUtil.java
LoggerUtil.setLevel
public static void setLevel(Level outputLevel) { Logger appRooLogger = Logger.getLogger("edu.ucla.sspace"); Handler verboseHandler = new ConsoleHandler(); verboseHandler.setLevel(outputLevel); appRooLogger.addHandler(verboseHandler); appRooLogger.setLevel(outputLevel); ap...
java
public static void setLevel(Level outputLevel) { Logger appRooLogger = Logger.getLogger("edu.ucla.sspace"); Handler verboseHandler = new ConsoleHandler(); verboseHandler.setLevel(outputLevel); appRooLogger.addHandler(verboseHandler); appRooLogger.setLevel(outputLevel); ap...
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Sets the output level of the S-Space package according to the desired level.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/LoggerUtil.java#L66-L73
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/text/WordIterator.java
WordIterator.advance
private void advance() { try { // loop until we find a word in the reader, or there are no more // words while (true) { // if we haven't looked at any lines yet, or if the index into // the current line is already at the end if...
java
private void advance() { try { // loop until we find a word in the reader, or there are no more // words while (true) { // if we haven't looked at any lines yet, or if the index into // the current line is already at the end if...
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Advances to the next word in the buffer.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/text/WordIterator.java#L87-L121
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/AtomicGrowingSparseHashMatrix.java
AtomicGrowingSparseHashMatrix.checkIndices
private void checkIndices(int row, int col, boolean expand) { if (row < 0 || col < 0) { throw new ArrayIndexOutOfBoundsException(); } if (expand) { int r = row + 1; int cur = 0; while (r > (cur = rows.get()) && !rows.compareAndSet(cur, r)) ...
java
private void checkIndices(int row, int col, boolean expand) { if (row < 0 || col < 0) { throw new ArrayIndexOutOfBoundsException(); } if (expand) { int r = row + 1; int cur = 0; while (r > (cur = rows.get()) && !rows.compareAndSet(cur, r)) ...
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Verify that the given row and column value is non-negative, and optionally expand the size of the matrix if the row or column are outside the current bounds. @param row the row index to check. @param the the column index to check. @param expand {@code true} if the current dimensions of the matrix should be updated if ...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/AtomicGrowingSparseHashMatrix.java#L191-L205
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/SparseDirectedTypedEdgeSet.java
SparseDirectedTypedEdgeSet.index
private static int index(Object o) { Integer i = TYPE_INDICES.get(o); if (i == null) { synchronized (TYPE_INDICES) { // check that another thread did not already update the index i = TYPE_INDICES.get(o); if (i != null) retur...
java
private static int index(Object o) { Integer i = TYPE_INDICES.get(o); if (i == null) { synchronized (TYPE_INDICES) { // check that another thread did not already update the index i = TYPE_INDICES.get(o); if (i != null) retur...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/SparseDirectedTypedEdgeSet.java#L105-L122
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/WorkQueue.java
WorkQueue.addThread
private void addThread() { Thread t = new WorkerThread(workQueue); threads.add(t); t.start(); }
java
private void addThread() { Thread t = new WorkerThread(workQueue); threads.add(t); t.start(); }
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Increases the number of concurrently processing threads by one.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/WorkQueue.java#L145-L149
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/WorkQueue.java
WorkQueue.getRemainingTasks
public long getRemainingTasks(Object taskGroupId) { CountDownLatch latch = taskKeyToLatch.get(taskGroupId); return (latch == null) ? 0 : latch.getCount(); }
java
public long getRemainingTasks(Object taskGroupId) { CountDownLatch latch = taskKeyToLatch.get(taskGroupId); return (latch == null) ? 0 : latch.getCount(); }
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Returns the number of tasks that need to be completed before the group associated with the key is complete. Note that this number includes both those tasks running and not yet completed, as well as tasks that have yet to be enqueued on behalf of this id. @param taskGroupId the key associated with a task group @retur...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/WorkQueue.java#L216-L221
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/WorkQueue.java
WorkQueue.registerTaskGroup
public Object registerTaskGroup(int numTasks) { Object key = new Object(); taskKeyToLatch.putIfAbsent(key, new CountDownLatch(numTasks)); return key; }
java
public Object registerTaskGroup(int numTasks) { Object key = new Object(); taskKeyToLatch.putIfAbsent(key, new CountDownLatch(numTasks)); return key; }
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/WorkQueue.java#L266-L270
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/WorkQueue.java
WorkQueue.run
public void run(Collection<Runnable> tasks) { // Create a semphore that the wrapped runnables will execute int numTasks = tasks.size(); CountDownLatch latch = new CountDownLatch(numTasks); for (Runnable r : tasks) { if (r == null) throw new NullPointerExceptio...
java
public void run(Collection<Runnable> tasks) { // Create a semphore that the wrapped runnables will execute int numTasks = tasks.size(); CountDownLatch latch = new CountDownLatch(numTasks); for (Runnable r : tasks) { if (r == null) throw new NullPointerExceptio...
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Executes the tasks using a thread pool and returns once all tasks have finished. @throws IllegalStateException if interrupted while waiting for the tasks to finish
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/WorkQueue.java#L309-L325
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/ReflectionUtil.java
ReflectionUtil.getObjectInstance
@SuppressWarnings("unchecked") public static <T> T getObjectInstance(String className) { try { Class clazz = Class.forName(className); return (T) clazz.newInstance(); } catch (Exception e) { throw new Error(e); } }
java
@SuppressWarnings("unchecked") public static <T> T getObjectInstance(String className) { try { Class clazz = Class.forName(className); return (T) clazz.newInstance(); } catch (Exception e) { throw new Error(e); } }
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Returns an arbitrary object instance based on a class name. @param className The name of a desired class to instantiate.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/ReflectionUtil.java#L41-L49
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Similarity.java
Similarity.getSimilarity
public static <T extends Vector> double getSimilarity( SimType similarityType, T a, T b) { switch (similarityType) { case COSINE: return cosineSimilarity(a, b); case PEARSON_CORRELATION: return correlation(a, b); case EUCLIDEAN: ...
java
public static <T extends Vector> double getSimilarity( SimType similarityType, T a, T b) { switch (similarityType) { case COSINE: return cosineSimilarity(a, b); case PEARSON_CORRELATION: return correlation(a, b); case EUCLIDEAN: ...
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Calculates the similarity of the two vectors using the provided similarity measure. @param similarityType the similarity evaluation to use when comparing {@code a} and {@code b} @param a a {@code Vector} @param b a {@code Vector} @return the similarity according to the specified measure
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Similarity.java#L260-L285
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Similarity.java
Similarity.cosineSimilarity
public static double cosineSimilarity(double[] a, double[] b) { check(a,b); double dotProduct = 0.0; double aMagnitude = 0.0; double bMagnitude = 0.0; for (int i = 0; i < b.length ; i++) { double aValue = a[i]; double bValue = b[i]; aMagnitude ...
java
public static double cosineSimilarity(double[] a, double[] b) { check(a,b); double dotProduct = 0.0; double aMagnitude = 0.0; double bMagnitude = 0.0; for (int i = 0; i < b.length ; i++) { double aValue = a[i]; double bValue = b[i]; aMagnitude ...
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Returns the cosine similarity of the two arrays. @throws IllegalArgumentException when the length of the two vectors are not the same.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Similarity.java#L325-L342
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Similarity.java
Similarity.spearmanRankCorrelationCoefficient
public static double spearmanRankCorrelationCoefficient(double[] a, double[] b) { check(a, b); int N = a.length; int NcubedMinusN = (N * N * N) - N; // Convert a and b into rankings. The last value of this array is the ...
java
public static double spearmanRankCorrelationCoefficient(double[] a, double[] b) { check(a, b); int N = a.length; int NcubedMinusN = (N * N * N) - N; // Convert a and b into rankings. The last value of this array is the ...
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Computes the Spearman rank correlation coefficient for the two arrays. <p> This implementation properly accounts for ties according to the procedure specified in <i>Nonparametric Statistics for The Behavioral Sciences</i> by Sidney Siegel and N. John Castellan Jr. Second Ed. (1988). @throws IllegalArgumentException w...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Similarity.java#L1020-L1050
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/SparseTypedEdgeSet.java
SparseTypedEdgeSet.types
public Set<T> types() { // NOTE: purely unoptimized! Set<T> types = new HashSet<T>(); for (Object o : edges.values()) { Set<T> s = (Set<T>)o; types.addAll(s); } return types; }
java
public Set<T> types() { // NOTE: purely unoptimized! Set<T> types = new HashSet<T>(); for (Object o : edges.values()) { Set<T> s = (Set<T>)o; types.addAll(s); } return types; }
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Returns the set of types contained within this set
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/SparseTypedEdgeSet.java#L318-L326
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.mean
public static double mean(Collection<? extends Number> values) { double sum = 0d; for (Number n : values) sum += n.doubleValue(); return sum / values.size(); }
java
public static double mean(Collection<? extends Number> values) { double sum = 0d; for (Number n : values) sum += n.doubleValue(); return sum / values.size(); }
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L103-L108
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.mean
public static double mean(int[] values) { double sum = 0d; for (int i : values) sum += i; return sum / values.length; }
java
public static double mean(int[] values) { double sum = 0d; for (int i : values) sum += i; return sum / values.length; }
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L113-L118
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.median
@SuppressWarnings("unchecked") public static <T extends Number & Comparable> T median(Collection<T> values) { if (values.isEmpty()) throw new IllegalArgumentException( "No median in an empty collection"); List<T> sorted = new ArrayList<T>(values); Collect...
java
@SuppressWarnings("unchecked") public static <T extends Number & Comparable> T median(Collection<T> values) { if (values.isEmpty()) throw new IllegalArgumentException( "No median in an empty collection"); List<T> sorted = new ArrayList<T>(values); Collect...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L133-L142
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.median
public static double median(int[] values) { if (values.length == 0) throw new IllegalArgumentException("No median in an empty array"); int[] sorted = Arrays.copyOf(values, values.length); Arrays.sort(sorted); return sorted[sorted.length/2]; }
java
public static double median(int[] values) { if (values.length == 0) throw new IllegalArgumentException("No median in an empty array"); int[] sorted = Arrays.copyOf(values, values.length); Arrays.sort(sorted); return sorted[sorted.length/2]; }
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L147-L153
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.mode
public static <T extends Number> T mode(Collection<T> values) { if (values.isEmpty()) throw new IllegalArgumentException( "No mode in an empty collection"); Counter<T> c = new ObjectCounter<T>(); for (T n : values) c.count(n); return c.max(); }
java
public static <T extends Number> T mode(Collection<T> values) { if (values.isEmpty()) throw new IllegalArgumentException( "No mode in an empty collection"); Counter<T> c = new ObjectCounter<T>(); for (T n : values) c.count(n); return c.max(); }
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Returns the mode value of the collection of numbers
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L169-L177
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.mode
public static int mode(int[] values) { if (values.length == 0) throw new IllegalArgumentException("No mode in an empty array"); Counter<Integer> c = new ObjectCounter<Integer>(); for (int i : values) c.count(i); return c.max(); }
java
public static int mode(int[] values) { if (values.length == 0) throw new IllegalArgumentException("No mode in an empty array"); Counter<Integer> c = new ObjectCounter<Integer>(); for (int i : values) c.count(i); return c.max(); }
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L182-L189
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.mode
public static double mode(double[] values) { if (values.length == 0) throw new IllegalArgumentException("No mode in an empty array"); Counter<Double> c = new ObjectCounter<Double>(); for (double d : values) c.count(d); return c.max(); }
java
public static double mode(double[] values) { if (values.length == 0) throw new IllegalArgumentException("No mode in an empty array"); Counter<Double> c = new ObjectCounter<Double>(); for (double d : values) c.count(d); return c.max(); }
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Returns the mode value of the array of doubles
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L194-L201
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.stddev
public static double stddev(Collection<? extends Number> values) { double mean = mean(values); double sum = 0d; for (Number n : values) { double d = n.doubleValue() - mean; sum += d*d; } return Math.sqrt(sum / values.size()); }
java
public static double stddev(Collection<? extends Number> values) { double mean = mean(values); double sum = 0d; for (Number n : values) { double d = n.doubleValue() - mean; sum += d*d; } return Math.sqrt(sum / values.size()); }
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Returns the standard deviation of the collection of numbers
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L250-L258
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.stddev
public static double stddev(int[] values) { double mean = mean(values); double sum = 0d; for (int i : values) { double d = i - mean; sum += d*d; } return Math.sqrt(sum / values.length); }
java
public static double stddev(int[] values) { double mean = mean(values); double sum = 0d; for (int i : values) { double d = i - mean; sum += d*d; } return Math.sqrt(sum / values.length); }
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Returns the standard deviation of the values in the int array
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L263-L271
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/common/Statistics.java
Statistics.sum
public static double sum(Collection<? extends Number> values) { double sum = 0d; for (Number n : values) sum += n.doubleValue(); return sum; }
java
public static double sum(Collection<? extends Number> values) { double sum = 0d; for (Number n : values) sum += n.doubleValue(); return sum; }
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Returns the sum of the collection of numbers
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/common/Statistics.java#L289-L294
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/LinkClustering.java
LinkClustering.getConnectionSimilarity
private <E extends Edge> double getConnectionSimilarity( Graph<E> graph, Edge e1, Edge e2) { int e1to = e1.to(); int e1from = e1.from(); int e2to = e2.to(); int e2from = e2.from(); if (e1to == e2to) return getConnectionSimilarity(graph, e1to, e1from, e2fro...
java
private <E extends Edge> double getConnectionSimilarity( Graph<E> graph, Edge e1, Edge e2) { int e1to = e1.to(); int e1from = e1.from(); int e2to = e2.to(); int e2from = e2.from(); if (e1to == e2to) return getConnectionSimilarity(graph, e1to, e1from, e2fro...
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Computes the connection similarity for the two edges, first calculating the impost and keystones nodes. If the edges are not connected, returns 0. @see #getConnectionSimilarity(Graph,int,int,int)
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/LinkClustering.java#L967-L983
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/TrieMap.java
TrieMap.addIntermediateNode
private void addIntermediateNode(Node<V> original, int numOverlappingCharacters, String key, int indexOfStartOfOverlap, V value) { // get the current prefix for the node char[] originalPrefix = original.prefix; // create the new prefix for the original node, which will ...
java
private void addIntermediateNode(Node<V> original, int numOverlappingCharacters, String key, int indexOfStartOfOverlap, V value) { // get the current prefix for the node char[] originalPrefix = original.prefix; // create the new prefix for the original node, which will ...
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Creates a series of children under the provided node, moving the value that was mapped to this node to the appropriate terminal node in the series and finally creating a new node at the end to hold the new key-value mapping. @param node a node under which a new key-value mapping is being added @param nodesToCreate the...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/TrieMap.java#L448-L507
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/BetweennessCentrality.java
BetweennessCentrality.compute
public <E extends Edge> double[] compute(Graph<E> g) { // Perform a quick test for whether the vertices of g are a contiguous // sequence starting at 0, which makes the vertex mapping trivial if (!hasContiguousVertices(g)) throw new IllegalArgumentException( "Vertices...
java
public <E extends Edge> double[] compute(Graph<E> g) { // Perform a quick test for whether the vertices of g are a contiguous // sequence starting at 0, which makes the vertex mapping trivial if (!hasContiguousVertices(g)) throw new IllegalArgumentException( "Vertices...
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Returns a mapping from each vertex to its betweenness centrality measure.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/BetweennessCentrality.java#L54-L113
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/clustering/LinkClustering.java
LinkClustering.getEdgeSimMatrix
private Matrix getEdgeSimMatrix(List<Edge> edgeList, SparseMatrix sm, boolean keepSimilarityMatrixInMemory) { return (keepSimilarityMatrixInMemory) ? calculateEdgeSimMatrix(edgeList, sm) : new LazySimilarityMatrix(edgeList, sm); }
java
private Matrix getEdgeSimMatrix(List<Edge> edgeList, SparseMatrix sm, boolean keepSimilarityMatrixInMemory) { return (keepSimilarityMatrixInMemory) ? calculateEdgeSimMatrix(edgeList, sm) : new LazySimilarityMatrix(edgeList, sm); }
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Returns the edge similarity matrix for the edges in the provided sparse matrix.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/clustering/LinkClustering.java#L357-L362
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/clustering/LinkClustering.java
LinkClustering.calculateEdgeSimMatrix
private Matrix calculateEdgeSimMatrix( final List<Edge> edgeList, final SparseMatrix sm) { final int numEdges = edgeList.size(); final Matrix edgeSimMatrix = new SparseSymmetricMatrix( new SparseHashMatrix(numEdges, numEdges)); Object key = workQueue.re...
java
private Matrix calculateEdgeSimMatrix( final List<Edge> edgeList, final SparseMatrix sm) { final int numEdges = edgeList.size(); final Matrix edgeSimMatrix = new SparseSymmetricMatrix( new SparseHashMatrix(numEdges, numEdges)); Object key = workQueue.re...
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Calculates the similarity matrix for the edges. The similarity matrix is symmetric. @param edgeList the list of all edges known to the system @param sm a square matrix whose values denote edges between the rows. @return the similarity matrix
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/clustering/LinkClustering.java#L373-L402
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/clustering/LinkClustering.java
LinkClustering.convertMergesToAssignments
private static MultiMap<Integer,Integer> convertMergesToAssignments( List<Merge> merges, int numOriginalClusters) { MultiMap<Integer,Integer> clusterToElements = new HashMultiMap<Integer,Integer>(); for (int i = 0; i < numOriginalClusters; ++i) clusterToElements.put...
java
private static MultiMap<Integer,Integer> convertMergesToAssignments( List<Merge> merges, int numOriginalClusters) { MultiMap<Integer,Integer> clusterToElements = new HashMultiMap<Integer,Integer>(); for (int i = 0; i < numOriginalClusters; ++i) clusterToElements.put...
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Converts a series of merges to cluster assignments. Cluster assignments are assumed to start at 0. @param merges the merge steps, in order @param numOriginalClusters how many clusters are present prior to merging. This is typically the number of rows in the matrix being clustered @returns a mapping from a cluster t...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/clustering/LinkClustering.java#L415-L429
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/clustering/LinkClustering.java
LinkClustering.getImpostNeighbors
private static int[] getImpostNeighbors(SparseMatrix sm, int rowIndex) { int[] impost1edges = sm.getRowVector(rowIndex).getNonZeroIndices(); int[] neighbors = Arrays.copyOf(impost1edges, impost1edges.length + 1); neighbors[neighbors.length - 1] = rowIndex; return neighbors; }
java
private static int[] getImpostNeighbors(SparseMatrix sm, int rowIndex) { int[] impost1edges = sm.getRowVector(rowIndex).getNonZeroIndices(); int[] neighbors = Arrays.copyOf(impost1edges, impost1edges.length + 1); neighbors[neighbors.length - 1] = rowIndex; return neighbors; }
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Returns an array containing the row indices of the neighbors of the impost node and the row index of the impost node itself.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/clustering/LinkClustering.java#L491-L496
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/clustering/LinkClustering.java
LinkClustering.getSolutionDensity
public double getSolutionDensity(int solutionNum) { if (solutionNum < 0 || solutionNum >= mergeOrder.size()) { throw new IllegalArgumentException( "not a valid solution: " + solutionNum); } if (mergeOrder == null || edgeList == null) { throw new Ille...
java
public double getSolutionDensity(int solutionNum) { if (solutionNum < 0 || solutionNum >= mergeOrder.size()) { throw new IllegalArgumentException( "not a valid solution: " + solutionNum); } if (mergeOrder == null || edgeList == null) { throw new Ille...
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Returns the partition density of the clustering solution.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/clustering/LinkClustering.java#L501-L542
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/clustering/LinkClustering.java
LinkClustering.getSolution
public Assignments getSolution(int solutionNum) { if (solutionNum < 0 || solutionNum >= mergeOrder.size()) { throw new IllegalArgumentException( "not a valid solution: " + solutionNum); } if (mergeOrder == null || edgeList == null) { throw new Illega...
java
public Assignments getSolution(int solutionNum) { if (solutionNum < 0 || solutionNum >= mergeOrder.size()) { throw new IllegalArgumentException( "not a valid solution: " + solutionNum); } if (mergeOrder == null || edgeList == null) { throw new Illega...
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Returns the clustering solution after the specified number of merge steps. @param solutionNum the number of merge steps to take prior to returning the clustering solution. @throws IllegalArgumentException if {@code solutionNum} is less than 0 or is greater than or equal to {@link #numberOfSolutions()}. @throws Illega...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/clustering/LinkClustering.java#L556-L598
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/Statistics.java
Statistics.average
public static Matrix average(Matrix m, Dimension dim) { Matrix averageMatrix = null; if (dim == Dimension.ALL) { // Compute the average of all values in the matrix. double average = 0; for (int i = 0; i < m.rows(); ++i) { for (int j = 0; j < m.columns...
java
public static Matrix average(Matrix m, Dimension dim) { Matrix averageMatrix = null; if (dim == Dimension.ALL) { // Compute the average of all values in the matrix. double average = 0; for (int i = 0; i < m.rows(); ++i) { for (int j = 0; j < m.columns...
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Return a matrix containing the averages for the dimension specificed. @param m The matrix containing values to evaluate. @param dim The dimension across which analysis should take place. @return A matrix of the averages.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/Statistics.java#L138-L180
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/tools/BlogPreProcessor.java
BlogPreProcessor.processFile
public void processFile(File blogFile) throws IOException { BufferedReader br = new BufferedReader(new FileReader(blogFile)); String line = null; String date = null; String id = null; StringBuilder content = new StringBuilder(); boolean needMoreContent = false; while ((line = br.readLine()) ...
java
public void processFile(File blogFile) throws IOException { BufferedReader br = new BufferedReader(new FileReader(blogFile)); String line = null; String date = null; String id = null; StringBuilder content = new StringBuilder(); boolean needMoreContent = false; while ((line = br.readLine()) ...
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Given a blog file, read through each line and extract the content and updated date, printing these as one line to the result file.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/tools/BlogPreProcessor.java#L89-L152
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/SimpleGraphIterator.java
SimpleGraphIterator.enumerateSimpleGraphs
private Collection<Multigraph<T,E>> enumerateSimpleGraphs( Multigraph<T,E> input, List<IntPair> connected, int curPair, Multigraph<T,E> toCopy) { List<Multigraph<T,E>> simpleGraphs = new LinkedList<Multigraph<T,E>>(); IntPair p = connected.get(curPair); // Get th...
java
private Collection<Multigraph<T,E>> enumerateSimpleGraphs( Multigraph<T,E> input, List<IntPair> connected, int curPair, Multigraph<T,E> toCopy) { List<Multigraph<T,E>> simpleGraphs = new LinkedList<Multigraph<T,E>>(); IntPair p = connected.get(curPair); // Get th...
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Recursively enumerates the parallel edge permutations of the input graph, building up the graphs and returning the entire set of graphs. @param input the base graph from which edges are selected @param connected the list of vertex pairs that are connected by one or more edges @param curPair the index into {@code conne...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/SimpleGraphIterator.java#L146-L175
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/SimpleGraphIterator.java
SimpleGraphIterator.next
public Multigraph<T,E> next() { if (!hasNext()) throw new NoSuchElementException(); Multigraph<T,E> cur = next.poll(); if (next.isEmpty()) advance(); return cur; }
java
public Multigraph<T,E> next() { if (!hasNext()) throw new NoSuchElementException(); Multigraph<T,E> cur = next.poll(); if (next.isEmpty()) advance(); return cur; }
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/SimpleGraphIterator.java#L187-L194
train
fozziethebeat/S-Space
opt/src/main/java/edu/ucla/sspace/grefenstette/Grefenstette.java
Grefenstette.addRelation
private void addRelation(String object, String attribute) { double val; int row, col; object = object.toLowerCase(); attribute = attribute.toLowerCase(); // get row in matrix if( objectTable.containsKey(object) ) { // if the object already exists in matrix, ...
java
private void addRelation(String object, String attribute) { double val; int row, col; object = object.toLowerCase(); attribute = attribute.toLowerCase(); // get row in matrix if( objectTable.containsKey(object) ) { // if the object already exists in matrix, ...
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Adds a relation pair to the matrix
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/opt/src/main/java/edu/ucla/sspace/grefenstette/Grefenstette.java#L284-L324
train
fozziethebeat/S-Space
opt/src/main/java/edu/ucla/sspace/grefenstette/Grefenstette.java
Grefenstette.inStartSet
private boolean inStartSet(String tag) { return // noun tag.startsWith("NN") || // adjective tag.startsWith("JJ") || // adverb tag.startsWith("RB") || // cardinal number tag.startsWith("CD"); }
java
private boolean inStartSet(String tag) { return // noun tag.startsWith("NN") || // adjective tag.startsWith("JJ") || // adverb tag.startsWith("RB") || // cardinal number tag.startsWith("CD"); }
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Checks to see if the tag can modify another word @param tag A tag from the parsed corpus to be checked
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/opt/src/main/java/edu/ucla/sspace/grefenstette/Grefenstette.java#L362-L372
train
fozziethebeat/S-Space
opt/src/main/java/edu/ucla/sspace/grefenstette/Grefenstette.java
Grefenstette.isPhraseOrClause
private boolean isPhraseOrClause(String tag) { // find out why adding more reduced the number of relations return (!tag.equals("SYM") && tag.startsWith("S")) || tag.equals("ADJP") || tag.equals("ADVP") || tag.equals("CONJP") || tag...
java
private boolean isPhraseOrClause(String tag) { // find out why adding more reduced the number of relations return (!tag.equals("SYM") && tag.startsWith("S")) || tag.equals("ADJP") || tag.equals("ADVP") || tag.equals("CONJP") || tag...
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Checks to see if tag marks a phrase or clause
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/opt/src/main/java/edu/ucla/sspace/grefenstette/Grefenstette.java#L396-L420
train
fozziethebeat/S-Space
opt/src/main/java/edu/ucla/sspace/grefenstette/Grefenstette.java
Grefenstette.getNextTag
private String getNextTag(String str) { String tag; int endIndex; int tagIndex = str.indexOf("("); if( tagIndex < 0 ) { return null; } // in case there's nothing in the sentence endIndex = str.indexOf(" ", tagIndex); if( endIndex < 0 ) { ...
java
private String getNextTag(String str) { String tag; int endIndex; int tagIndex = str.indexOf("("); if( tagIndex < 0 ) { return null; } // in case there's nothing in the sentence endIndex = str.indexOf(" ", tagIndex); if( endIndex < 0 ) { ...
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Returns the next tag in the sentence or null if there are no more tags @param str The sentence that the tag is extracted from
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/opt/src/main/java/edu/ucla/sspace/grefenstette/Grefenstette.java#L426-L450
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/text/PatPho.java
PatPho.vectorize
public double[] vectorize(List<String> phonemes) { int nextConsonantIndex = 0; int nextVowelIndex = 0; double[] result = new double[(vowelIndices.length + consonantIndices.length) * 3]; for (String phoneme : phonemes) { int offset = 3; ...
java
public double[] vectorize(List<String> phonemes) { int nextConsonantIndex = 0; int nextVowelIndex = 0; double[] result = new double[(vowelIndices.length + consonantIndices.length) * 3]; for (String phoneme : phonemes) { int offset = 3; ...
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Returns a left-justified syllablilic template representation of the given list of phonemes. Every three values correspond to a single phoneme representation. If six syllables are used, a vector of 99 values is returned, otherwise a vector of 54 values is returned. @param phonemes A list of string phoneme representat...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/text/PatPho.java#L134-L150
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/tools/BigramExtractor.java
BigramExtractor.process
public void process(Iterator<String> text) { String nextToken = null, curToken = null; // Base case for the next token buffer to ensure we always have two // valid tokens present if (text.hasNext()) nextToken = text.next(); while (text.hasNext()) { curToke...
java
public void process(Iterator<String> text) { String nextToken = null, curToken = null; // Base case for the next token buffer to ensure we always have two // valid tokens present if (text.hasNext()) nextToken = text.next(); while (text.hasNext()) { curToke...
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Processes the tokens in the iterator to gather statistics for any bigrams contained therein
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/tools/BigramExtractor.java#L154-L168
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/tools/BigramExtractor.java
BigramExtractor.processBigram
private void processBigram(String left, String right) { TokenStats leftStats = getStatsFor(left); TokenStats rightStats = getStatsFor(right); // mark that both appeared leftStats.count++; rightStats.count++; // Mark the respective positions of each leftS...
java
private void processBigram(String left, String right) { TokenStats leftStats = getStatsFor(left); TokenStats rightStats = getStatsFor(right); // mark that both appeared leftStats.count++; rightStats.count++; // Mark the respective positions of each leftS...
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Updates the statistics for the bigram formed from the provided left and right token. @param left the left token in the bigram @param right the right token in the bigram
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/tools/BigramExtractor.java#L177-L210
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/tools/BigramExtractor.java
BigramExtractor.printBigrams
public void printBigrams(PrintWriter output, SignificanceTest test, int minOccurrencePerToken) { String[] indexToToken = new String[tokenCounts.size()]; for (Map.Entry<String,TokenStats> e : tokenCounts.entrySet()) indexToToken[e.getValue().index] = e....
java
public void printBigrams(PrintWriter output, SignificanceTest test, int minOccurrencePerToken) { String[] indexToToken = new String[tokenCounts.size()]; for (Map.Entry<String,TokenStats> e : tokenCounts.entrySet()) indexToToken[e.getValue().index] = e....
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Prints all of the known bigrams, where each token in the bigram must occur at least the number of specified time. @param output the writer where all the bigrams should be printed @param test the significant test to use in rating the statistical correlation of two tokens @param minOccurrencePerToken the minimum number ...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/tools/BigramExtractor.java#L289-L322
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/tools/BigramExtractor.java
BigramExtractor.getScore
private double getScore(int[] contingencyTable, SignificanceTest test) { switch (test) { case PMI: return pmi(contingencyTable); case CHI_SQUARED: return chiSq(contingencyTable); case LOG_LIKELIHOOD: return logLikelihood(contingencyTable); defa...
java
private double getScore(int[] contingencyTable, SignificanceTest test) { switch (test) { case PMI: return pmi(contingencyTable); case CHI_SQUARED: return chiSq(contingencyTable); case LOG_LIKELIHOOD: return logLikelihood(contingencyTable); defa...
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Returns the score of the contingency table using the specified significance test @param contingencyTable a contingency table specified as four {@code int} values @param test the significance test to use in evaluating the table
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/tools/BigramExtractor.java#L332-L343
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/tools/BigramExtractor.java
BigramExtractor.logLikelihood
private double logLikelihood(int[] contingencyTable) { // Rename for short-hand convenience int[] t = contingencyTable; int col1sum = t[0] + t[2]; int col2sum = t[1] + t[3]; int row1sum = t[0] + t[1]; int row2sum = t[2] + t[3]; double sum = row1sum + row2sum; ...
java
private double logLikelihood(int[] contingencyTable) { // Rename for short-hand convenience int[] t = contingencyTable; int col1sum = t[0] + t[2]; int col2sum = t[1] + t[3]; int row1sum = t[0] + t[1]; int row2sum = t[2] + t[3]; double sum = row1sum + row2sum; ...
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Returns the log-likelihood score of the contingency table
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/tools/BigramExtractor.java#L389-L409
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/dv/RelationBasedBasisMapping.java
RelationBasedBasisMapping.getDimension
public int getDimension(DependencyPath path) { String endToken = path.last().word(); // Extract out how the current word is related to the last word in the // path. String relation = path.getRelation(path.length() - 1); return getDimensionInternal(endToken + "+" + relation); ...
java
public int getDimension(DependencyPath path) { String endToken = path.last().word(); // Extract out how the current word is related to the last word in the // path. String relation = path.getRelation(path.length() - 1); return getDimensionInternal(endToken + "+" + relation); ...
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Returns the dimension number corresponding to the term at the end of the provided path. @param path a path whose end represents a semantic connection @return the dimension for the occurrence of the last word in the path
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/dv/RelationBasedBasisMapping.java#L51-L58
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/index/GaussianVectorGenerator.java
GaussianVectorGenerator.generate
public synchronized DoubleVector generate() { DoubleVector termVector = new DenseVector(indexVectorLength); for (int i = 0; i < indexVectorLength; i++) termVector.set(i, mean + (randomGenerator.nextGaussian() * stdev)); return termVector; }
java
public synchronized DoubleVector generate() { DoubleVector termVector = new DenseVector(indexVectorLength); for (int i = 0; i < indexVectorLength; i++) termVector.set(i, mean + (randomGenerator.nextGaussian() * stdev)); return termVector; }
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Generate a new random vector using a guassian distribution for each value.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/index/GaussianVectorGenerator.java#L137-L142
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/wordsi/WordOccrrenceContextGenerator.java
WordOccrrenceContextGenerator.addContextTerms
protected void addContextTerms(SparseDoubleVector meaning, Queue<String> words, int distance) { // Iterate through each of the context words. for (String term : words) { if (!term.equals(IteratorFactory.EMPTY_TOKEN)) { ...
java
protected void addContextTerms(SparseDoubleVector meaning, Queue<String> words, int distance) { // Iterate through each of the context words. for (String term : words) { if (!term.equals(IteratorFactory.EMPTY_TOKEN)) { ...
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Adds a feature for each word in the context that has a valid dimension. Feature are scored based on the context word's distance from the focus word.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/wordsi/WordOccrrenceContextGenerator.java#L108-L125
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/purandare/PurandareFirstOrder.java
PurandareFirstOrder.processSpace
@SuppressWarnings("unchecked") private void processSpace() throws IOException { compressedDocumentsWriter.close(); // Generate the reverse index-to-term mapping. We will need this for // assigning specific senses to each term String[] indexToTerm = new String[termToIndex.si...
java
@SuppressWarnings("unchecked") private void processSpace() throws IOException { compressedDocumentsWriter.close(); // Generate the reverse index-to-term mapping. We will need this for // assigning specific senses to each term String[] indexToTerm = new String[termToIndex.si...
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Calculates the first order co-occurrence statics to determine the feature set for each term, then clusters the feature vectors for each terms contexts and finally induces the sense-specific vectors for each term.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/purandare/PurandareFirstOrder.java#L404-L473
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/purandare/PurandareFirstOrder.java
PurandareFirstOrder.senseInduce
private void senseInduce(String term, Matrix contexts) throws IOException { LOGGER.fine("Clustering " + contexts.rows() + " contexts for " + term); // For terms with fewer than seven contexts, set the number of potential // clusters lower int numClusters = Math.min(7, contexts.rows()); ...
java
private void senseInduce(String term, Matrix contexts) throws IOException { LOGGER.fine("Clustering " + contexts.rows() + " contexts for " + term); // For terms with fewer than seven contexts, set the number of potential // clusters lower int numClusters = Math.min(7, contexts.rows()); ...
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Given a matrix for the term where each row is a different context, clusters the rows to identify how many senses the word has. @param term the term for which the senses will be discovered @param contexts a matrix containing all the contexts in which {@code term} appear, with one context per row
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/purandare/PurandareFirstOrder.java#L580-L646
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/purandare/PurandareFirstOrder.java
PurandareFirstOrder.processIntDocument
private int processIntDocument(int termIndex, int[] document, Matrix contextMatrix, int rowStart, BitSet featuresForTerm) { int contexts = 0; for (int i = 0; i < document.length; ++i) { ...
java
private int processIntDocument(int termIndex, int[] document, Matrix contextMatrix, int rowStart, BitSet featuresForTerm) { int contexts = 0; for (int i = 0; i < document.length; ++i) { ...
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Processes the compressed version of a document where each integer indicates that token's index and identifies all the contexts for the target word, adding them as new rows to the context matrix. @param termIndex the term whose contexts should be extracted @param document the document to be processed where each {@code ...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/purandare/PurandareFirstOrder.java#L665-L720
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/purandare/PurandareFirstOrder.java
PurandareFirstOrder.logLikelihood
private static double logLikelihood(double a, double b, double c, double d) { // Table set up as: // a b // c d double col1sum = a + c; double col2sum = b + d; double row1sum = a + b; double row2sum = c + d; d...
java
private static double logLikelihood(double a, double b, double c, double d) { // Table set up as: // a b // c d double col1sum = a + c; double col2sum = b + d; double row1sum = a + b; double row2sum = c + d; d...
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Returns the log-likelihood of the contingency table made up of the four values.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/purandare/PurandareFirstOrder.java#L741-L766
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/matrix/ArrayMatrix.java
ArrayMatrix.checkIndices
private void checkIndices(int row, int col) { if (row < 0 || row >= rows) throw new ArrayIndexOutOfBoundsException("row: " + row); else if (col < 0 || col >= cols) throw new ArrayIndexOutOfBoundsException("column: " + col); }
java
private void checkIndices(int row, int col) { if (row < 0 || row >= rows) throw new ArrayIndexOutOfBoundsException("row: " + row); else if (col < 0 || col >= cols) throw new ArrayIndexOutOfBoundsException("column: " + col); }
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Check that the indices of a requested cell are within bounds. @param row The row of the cell to check. @param col The column of the cell to check. @throws ArrayIndexOutOfBoundsException if
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/matrix/ArrayMatrix.java#L139-L144
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/graph/SparseWeightedEdgeSet.java
SparseWeightedEdgeSet.add
public boolean add(WeightedEdge e) { int toAdd = -1; if (e.from() == rootVertex) toAdd = e.to(); else if (e.to() == rootVertex) toAdd = e.from(); else { return false; } double w = e.weight(); if (edges.contains...
java
public boolean add(WeightedEdge e) { int toAdd = -1; if (e.from() == rootVertex) toAdd = e.to(); else if (e.to() == rootVertex) toAdd = e.from(); else { return false; } double w = e.weight(); if (edges.contains...
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Adds the edge to this set if one of the vertices is the root vertex. @return {@code true} if e was added or if the weight was changed for the conenction between an existing edge that matched
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/graph/SparseWeightedEdgeSet.java#L96-L116
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/clustering/CandidateCluster.java
CandidateCluster.centerOfMass
public DoubleVector centerOfMass() { // Handle lazy initialization if (centroid == null) { if (indices.size() == 1) centroid = sumVector; else { // Update the centroid by normalizing by the number of elements. // We expect that the ...
java
public DoubleVector centerOfMass() { // Handle lazy initialization if (centroid == null) { if (indices.size() == 1) centroid = sumVector; else { // Update the centroid by normalizing by the number of elements. // We expect that the ...
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Returns the average data point assigned to this candidate cluster
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/clustering/CandidateCluster.java#L64-L94
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/clustering/CandidateCluster.java
CandidateCluster.add
public void add(int index, DoubleVector v) { boolean added = indices.add(index); assert added : "Adding duplicate indices to candidate facility"; if (sumVector == null) { sumVector = (v instanceof SparseVector) ? new SparseHashDoubleVector(v) : new Den...
java
public void add(int index, DoubleVector v) { boolean added = indices.add(index); assert added : "Adding duplicate indices to candidate facility"; if (sumVector == null) { sumVector = (v instanceof SparseVector) ? new SparseHashDoubleVector(v) : new Den...
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Adds the data point with the specified index to the facility
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/clustering/CandidateCluster.java#L99-L111
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/clustering/CandidateCluster.java
CandidateCluster.merge
public void merge(CandidateCluster other) { indices.addAll(other.indices); VectorMath.add(sumVector, other.sumVector); centroid = null; }
java
public void merge(CandidateCluster other) { indices.addAll(other.indices); VectorMath.add(sumVector, other.sumVector); centroid = null; }
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Merges the elements assigned to the other cluster into this one.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/clustering/CandidateCluster.java#L135-L139
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/mains/FixedDurationTemporalRandomIndexingMain.java
FixedDurationTemporalRandomIndexingMain.printSpace
private void printSpace(SemanticSpace sspace, String tag) { try { String EXT = ".sspace"; File output = (overwrite) ? new File(outputDir, sspace.getSpaceName() + tag + EXT) : File.createTempFile(sspace.getSpaceName() + tag, EXT, ...
java
private void printSpace(SemanticSpace sspace, String tag) { try { String EXT = ".sspace"; File output = (overwrite) ? new File(outputDir, sspace.getSpaceName() + tag + EXT) : File.createTempFile(sspace.getSpaceName() + tag, EXT, ...
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Prints the semantic space to file, inserting the tag into the .sspace file name
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/mains/FixedDurationTemporalRandomIndexingMain.java#L481-L497
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/mains/FixedDurationTemporalRandomIndexingMain.java
FixedDurationTemporalRandomIndexingMain.updateTemporalSemantics
private void updateTemporalSemantics(long currentSemanticPartitionStartTime, SemanticSpace semanticPartition) { // Pre-allocate the zero vector so that if multiple interesting words // are not present in the space, they all point to the same zero ...
java
private void updateTemporalSemantics(long currentSemanticPartitionStartTime, SemanticSpace semanticPartition) { // Pre-allocate the zero vector so that if multiple interesting words // are not present in the space, they all point to the same zero ...
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Adds the temporal semantics for each interesting word using the provided semantic partition. @param currentSemanticPartitionStartTime the start time of the semantic partition
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/mains/FixedDurationTemporalRandomIndexingMain.java#L506-L528
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/mains/FixedDurationTemporalRandomIndexingMain.java
FixedDurationTemporalRandomIndexingMain.printShiftRankings
private void printShiftRankings(String dateString, long startOfMostRecentPartition, TimeSpan partitionDuration) throws IOException { SortedMultiMap<Double,String> shiftToWord = new TreeMultiMap<Double,String>(); ...
java
private void printShiftRankings(String dateString, long startOfMostRecentPartition, TimeSpan partitionDuration) throws IOException { SortedMultiMap<Double,String> shiftToWord = new TreeMultiMap<Double,String>(); ...
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Computes the ranking of which words underwent the most dramatic shifts in the most recent partition and then prints the ranking list of a file. @param dateString the string to use when indiciation which partition is having its ranking lists printed. This string becomes a part of the file name.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/mains/FixedDurationTemporalRandomIndexingMain.java#L591-L654
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/mains/FixedDurationTemporalRandomIndexingMain.java
FixedDurationTemporalRandomIndexingMain.usage
protected void usage() { System.out.println( "usage: java FixedDurationTemporalRandomIndexingMain [options] " + "<output-dir>\n\n" + argOptions.prettyPrint() + "\nFixed-Duration TRI provides four main output options:\n\n" + " 1) Outputting each s...
java
protected void usage() { System.out.println( "usage: java FixedDurationTemporalRandomIndexingMain [options] " + "<output-dir>\n\n" + argOptions.prettyPrint() + "\nFixed-Duration TRI provides four main output options:\n\n" + " 1) Outputting each s...
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Prints the instructions on how to execute this program to standard out.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/mains/FixedDurationTemporalRandomIndexingMain.java#L1018-L1059
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/DisjointSets.java
DisjointSets.iterator
public Iterator<T> iterator() { List<Iterator<T>> iters = new ArrayList<Iterator<T>>(sets.size()); for (Set<T> s : sets) iters.add(s.iterator()); return new CombinedIterator<T>(iters); }
java
public Iterator<T> iterator() { List<Iterator<T>> iters = new ArrayList<Iterator<T>>(sets.size()); for (Set<T> s : sets) iters.add(s.iterator()); return new CombinedIterator<T>(iters); }
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Returns an iterator over all the unique items across all sets.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/DisjointSets.java#L103-L108
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/util/DisjointSets.java
DisjointSets.size
public int size() { // Since the sets are disjoint, we can simple sum their sizes int size = 0; for (Set<T> s : sets) size += s.size(); return size; }
java
public int size() { // Since the sets are disjoint, we can simple sum their sizes int size = 0; for (Set<T> s : sets) size += s.size(); return size; }
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Returns the number of unique items across all sets.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/util/DisjointSets.java#L136-L142
train
fozziethebeat/S-Space
hadoop/src/main/java/edu/ucla/sspace/hadoop/TextIntWritable.java
TextIntWritable.readFields
public void readFields(DataInput in) throws IOException { t.readFields(in); position = in.readInt(); }
java
public void readFields(DataInput in) throws IOException { t.readFields(in); position = in.readInt(); }
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Deserializes the internal data from the provided stream.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/hadoop/src/main/java/edu/ucla/sspace/hadoop/TextIntWritable.java#L128-L131
train
fozziethebeat/S-Space
hadoop/src/main/java/edu/ucla/sspace/hadoop/TextIntWritable.java
TextIntWritable.write
public void write(DataOutput out) throws IOException { t.write(out); out.writeInt(position); }
java
public void write(DataOutput out) throws IOException { t.write(out); out.writeInt(position); }
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Serailizes the internsal data to the provided stream
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/hadoop/src/main/java/edu/ucla/sspace/hadoop/TextIntWritable.java#L136-L139
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/beagle/Beagle.java
Beagle.normalize
private void normalize(DoubleVector v) { double magnitude = 0; for (int i = 0; i < v.length(); ++i) magnitude += Math.pow(v.get(i), 2); if (magnitude == 0) return; magnitude = Math.sqrt(magnitude); for (int i = 0; i < v.length(); ++i) v.set(i,...
java
private void normalize(DoubleVector v) { double magnitude = 0; for (int i = 0; i < v.length(); ++i) magnitude += Math.pow(v.get(i), 2); if (magnitude == 0) return; magnitude = Math.sqrt(magnitude); for (int i = 0; i < v.length(); ++i) v.set(i,...
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Performs l2-normalization on the vector in place. If the magnitude of the vector is 0, the values are left unchanged.
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/beagle/Beagle.java#L319-L329
train
fozziethebeat/S-Space
src/main/java/edu/ucla/sspace/beagle/Beagle.java
Beagle.groupConvolution
private DoubleVector groupConvolution(Queue<String> prevWords, Queue<String> nextWords) { // Generate an empty DoubleVector to hold the convolution. DoubleVector result = new DenseVector(indexVectorSize); // Do the convolutions starting at index 0. ...
java
private DoubleVector groupConvolution(Queue<String> prevWords, Queue<String> nextWords) { // Generate an empty DoubleVector to hold the convolution. DoubleVector result = new DenseVector(indexVectorSize); // Do the convolutions starting at index 0. ...
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Generate the circular convoltion of n-grams composed of words in the given context. The result of this convolution is returned as a DoubleVector. @param prevWords The words prior to the focus word in the context. @param nextWords The Words after the focus word in the context. @return The semantic vector generated fro...
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a608102737dfd3d59038a9ead33fe60356bc6029
https://github.com/fozziethebeat/S-Space/blob/a608102737dfd3d59038a9ead33fe60356bc6029/src/main/java/edu/ucla/sspace/beagle/Beagle.java#L341-L376
train