plateform stringclasses 1
value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | PavelTrutman/FocalNet-master | ddg.m | .m | FocalNet-master/deepag/bin/lib/utils/ddg.m | 1,071 | utf_8 | 5fe44ee27029e0a04af9d9410117cf3f | %DDG Pajdla: Convolves 1-D signal with the 2nd derivative of a gaussian
%
% function [ddsignal,filter]=ddg(signal,s)
%
% signal = input signal
% s = sigma
% ddsignal= output signal
% filter = sampled filter
%
% See also: CONV, CONV2.
% Author: Tomas Pajdla, Tomas.Pajdla@esat.kuleuven.ac.be
... |
github | PavelTrutman/FocalNet-master | ltdetect.m | .m | FocalNet-master/deepag/bin/lib/utils/ltdetect.m | 9,074 | utf_8 | 340bba272517bdc8de8c83656cab4165 | %ltdetect - Laser trace subpixel detection (columnwise).
%
% function [sx,ix,nx] = ltdetect(im,par,iv,xs)
%
% im = image
% par = [bt dbt dp df fi]
%
% bt = belief threshold, only maximas > bt are valid
% if bt<0, returns all ignoring all other conditions
% dbt = minimal difference ... |
github | PavelTrutman/FocalNet-master | e2sval.m | .m | FocalNet-master/deepag/bin/lib/utils/e2sval.m | 521 | utf_8 | e1de3f4df88a8973440d302da004f983 | % a = e2sval(E) - Edge list E to symmetric vertex adjacency list
%
% E = n x 2 matrix [[v1,v2], ...] with vertice v1, v2
% a = {[v1 v2 v3 ...], ...} cellaray of lists of sjacent vertices
% 2015-09-06 pajdla@cmp.felk.cvut.cz
function a = e2sval(E)
E = unique(E,'rows','sorted'); % remove multiplicities and so... |
github | PavelTrutman/FocalNet-master | thrgui.m | .m | FocalNet-master/deepag/bin/lib/utils/thrgui.m | 2,180 | utf_8 | 2a878ad35c6ff4c76d3ee26dc377e912 | % thrgui(t) - Thresholding GUI
%
% Assumes a figure with an image. Modifies colormap set to 256 levels
% between the minimal and maximal intensities.
%
% Uparrow ... threshold = threshold + 1
% Downrrow ... threshold = threshold + 1
% Ctrl+ ... 10 * increment
% T. Pajdla, pajdla@neovision.cz
% 18 May ... |
github | PavelTrutman/FocalNet-master | digiplot.m | .m | FocalNet-master/deepag/bin/lib/utils/digiplot.m | 1,231 | utf_8 | 7ec9591a4c7b50cea33e813623a96316 | %DIGIPLOT Pajdla: Plots binary digital signal stored in matrix columns
%
%
% function [psig,f]=digiplot(dsig,plotstr)
%
% dsig = binary digitaal signal stored on matrix columns
% plotstr = plot string, see PLOT
%
% See also: PLOT, ROLLPLOT, GEC2BIN, BIN2DEC.
% Author: Tomas Pajdla, Tomas.Pajdla@esa... |
github | PavelTrutman/FocalNet-master | plot3d.m | .m | FocalNet-master/deepag/bin/lib/utils/plot3d.m | 469 | utf_8 | f603a03963ef6e951148e26166880fc7 | %h = plot3d(X,pars) - single matrix 3 x N plot in 3D
%
% X ... single matrix 3 x N
% pars ... other plot3 pars
%
% See also PLOT3
% (c) T.Pajdla, pajdla@cmp.felk.cvut.cz
% 5 May 2008
function h = plot3d(varargin)
X = varargin{1};
if size(X,1)==3
h0 = plot3(X(1,:),X(2,:),X(3,:),varargin{2:end});
else... |
github | PavelTrutman/FocalNet-master | gausmix.m | .m | FocalNet-master/deepag/bin/lib/utils/gausmix.m | 1,165 | utf_8 | 368343003ff64658dac5e15bf640b4d6 | %GAUSMIX Pajdla: Creates a vector of samples from a gaussian PDF mixure
%
%
% function r = gausmix(len,X,S,noiseS)
%
% len = length of the row
% X = vector of mean values for G. PDF
% S = vector of sigma for G. PDF
% noiseS = sigma for bacgroung Gaussian noise
% additive noise
%
% The vector is construct... |
github | PavelTrutman/FocalNet-master | imgprfil.m | .m | FocalNet-master/deepag/bin/lib/utils/imgprfil.m | 1,446 | utf_8 | 010587ae3c6753779355ed49a566d1e9 | %IMGPRFIL Pajdla: Shows horizontal and vertical profiles in an image
%
% function imgprfil(m,f1)
%
% m = image matrix
% f1 = figure with the image displayed
%
% See also: RCPROFIL.
% Author: Tomas Pajdla, Tomas.Pajdla@esat.kuleuven.ac.be
% pajdla@vision.felk.cvut.cz
% 04/15/95 ESAT-MI2... |
github | PavelTrutman/FocalNet-master | e2gam.m | .m | FocalNet-master/deepag/bin/lib/utils/e2gam.m | 482 | utf_8 | 60975978afbeb9e07ec6fc8546039198 | % A = E2gAM(E) - Edge list E to graph non-symmetric adjacency matrix A
%
% E = n x 2(3) matrix [[v1,v2,w12], ...] with vertice v1, v2 and weight w12
% wij are set to one for n x 2 matrix
% 2015-09-06 pajdla@cmp.felk.cvut.cz
function A = e2gam(E)
if size(E,2)<3
E(:,3) = ones(size(E,1),1);
end
n = ma... |
github | PavelTrutman/FocalNet-master | valfind.m | .m | FocalNet-master/deepag/bin/lib/utils/valfind.m | 376 | utf_8 | c0cfa7e51f9f5833025c1af93d9d5ece | % ix = valfind(v,x) find posiiton index of occurences of elements of v in x
% v ... a vector of n values
% x ... a vector of m values
% ix ... {[i,j],{k},} n cells, ix{i} are positions of v(1) in x
% Tomas Pajdla (pajdla@ciirc.cvut.cz)
% 2013-11-01
function ix = valfind(v,x)
ix = cell(1,numel(v));
for i=1... |
github | PavelTrutman/FocalNet-master | adprintf.m | .m | FocalNet-master/deepag/bin/lib/utils/adprintf.m | 208 | utf_8 | 407196657a3d984742fc1c7a577650d6 | % S = adprintf(S,s) - fprintf s and append to celarray S
%
% S = cellarray of strings
% s = string
% 2015-08-23 pajdla@cmp.felk.cvut.cz
function S = adprintf(S,s)
fprintf(s);
S{end+1}=s;
drawnow; |
github | PavelTrutman/FocalNet-master | imaqplot.m | .m | FocalNet-master/deepag/bin/lib/utils/imaqplot.m | 4,325 | utf_8 | 6d44b38f677d2093f7e45bf080513d4b | function imagehandle = imaqplot(obj, event, himage)
%IMAQPLOT Create and update an image acquisition plot display.
%
% IMAQPLOT(OBJ, EVENT) creates and updates a live image
% acquisition plot display using video input object OBJ. EVENT is used
% to allow IMAQPLOT to be used as a function handle callbac... |
github | PavelTrutman/FocalNet-master | colorlist.m | .m | FocalNet-master/deepag/bin/lib/utils/colorlist.m | 1,160 | utf_8 | dbb19d3193d6721c76145d3fcff15f38 | % c = colorlist(t,i) - colors for plotting
%
% t = type of output
% 'txt' ... c ={'r','g',...} (missing)
% 'rgb' ... c ={[0 0 1],...}
% 'rnd' ... c ={[. . .],...} of 64 same randomly chosen colors
% i = index color modulo the color size
% number ... returns color
% vector ... returns cell ar... |
github | PavelTrutman/FocalNet-master | WorkerObjWrapper.m | .m | FocalNet-master/deepag/bin/lib/utils/WorkerObjWrapper.m | 7,904 | utf_8 | 99dcc0157911f73b6393ddea077c52bb | % WorkerObjWrapper - manage persistent state on MATLABPOOL workers
%
% The WorkerObjWrapper is designed for situations where a piece of data is
% needed multiple times inside the body of a PARFOR loop or an SPMD block, and
% this piece of data is both expensive to create, and does not need to be
% re-created multiple t... |
github | PavelTrutman/FocalNet-master | refprintf.m | .m | FocalNet-master/deepag/bin/lib/utils/refprintf.m | 632 | utf_8 | eaefb7c786459756c0fae93be01b26f5 | % nbytes = refprintf(vargin) - rewrite fprintf over
%
% varargin, nbytes ... nbytes = fprintf(varargin)
% 2015-05-10 pajdla@cmp.felk.cvut.cz
function nbytes = refprintf(varargin)
switch nargin
case 1
fprintf(repmat('\b',1,length(varargin{1})));
if nargout>0
nbytes = fprintf(... |
github | PavelTrutman/FocalNet-master | rmprintf.m | .m | FocalNet-master/deepag/bin/lib/utils/rmprintf.m | 319 | utf_8 | 0f8721487f561fc46d7a2795998451c1 | % S = rmprintf(S) - delete last string in celarray S from stdout
%
% S = cellarray of strings
% 2015-08-23 pajdla@cmp.felk.cvut.cz
function S = rmprintf(S)
if numel(S)>0
fprintf(repmat('\b',1,length(sprintf(S{end}))));
if numel(S)>1
S = S(1:end-1);
else
S = {};
end
end |
github | PavelTrutman/FocalNet-master | cgplot.m | .m | FocalNet-master/deepag/bin/lib/utils/cgplot.m | 761 | utf_8 | cb01402c17a0bc89bec2c0e113730b34 | % [h,X] = cgplot(A[,X,lc,lb]) - gplot with vertices X or uniformly dostributed on a unit circle
%
% A = n x n graph adjacency matrix or 2 x m edges of the graph
% X = 2(s) x n coordinates of vertices (on circle if missing)
% lc = {line color, line style}, {'b','-'} if missing
% lb = vertex labels
% h = handles re... |
github | PavelTrutman/FocalNet-master | chrfill.m | .m | FocalNet-master/deepag/bin/lib/utils/chrfill.m | 689 | utf_8 | 9c20227893d2b316d44e5a972bb6c48d | %CHRFILL Pajdla: Creates and fills the matrix with a given character
%
%
% function cm = chrfill(siz,ch)
%
% siz = 1 x 2 size matrix
% ch = chracter or an integer
% cm = string matrix of size "siz"
%
% See also ABS, SETSTR, REPLICA.
% Author: Tomas Pajdla, Tomas.Pajdla@esat.kuleuven.ac.be
... |
github | PavelTrutman/FocalNet-master | sec2hms.m | .m | FocalNet-master/deepag/bin/lib/utils/sec2hms.m | 252 | utf_8 | ef305e0feb4dc6baaa1b8e0338114653 | % hms = sec2hms(s) - seconds s to 'h/m/s' string hms
% 2015-05-10 pajdla@cmp.felk.cvut.cz
function hms = sec2hms(s)
s = round(s);
h = fix(s/3600); s = rem(s,3600);
m = fix(s/60); s = rem(s,60);
hms = sprintf('%02d h %02d m %02d s',h,m,s); |
github | PavelTrutman/FocalNet-master | cmcgrad.m | .m | FocalNet-master/deepag/bin/lib/utils/cmcgrad.m | 569 | utf_8 | f376716904644de021c470f3fa4f40a2 | % g = cmcgrad(imx,diffMask)
%
% Gradient for camcheck
%
% See CAMCHECK
% T. Pajdla, pajdla@neovision.cz
% 30 Dec 2006
function g = cmcgrad(imx,diffMask)
% border size
s = floor(length(diffMask)/2);
% gradient magnitude
g = sqrt(conv2(imx,diffMask,'same').^2 + conv2(imx,diffMask','same').^2)/(sum(abs(... |
github | PavelTrutman/FocalNet-master | polylinx.m | .m | FocalNet-master/deepag/bin/lib/utils/polylinx.m | 7,469 | utf_8 | 025dfc915dabb1bd22c7ca4499d897f7 | %polylinx - Pajdla: Coordinates of points sampled from a polyline
%
% function x = polylinx(v,d,m)
%
% v = [ [x y ... z , w ]' ; ...] , size(v)=[k+1 n],
% [k-dim vertex , validity ]' ; ...]
% w = 1 ... valid
% 0 ... invalid
%
% On... |
github | PavelTrutman/FocalNet-master | ridx.m | .m | FocalNet-master/deepag/bin/lib/utils/ridx.m | 775 | utf_8 | 26c3e02e5e6bda777013876c642cbd2b | %RIDX Pajdla: Non-integer reindexing
%
% function oidx = ridx(I,i)
%
% I = m x 2 matrix ~ [ii oi ; ...]
% i = input index
% oidx = oi(closest(i,ii))
%
% See also: VIDX,MATIMAT.
% Author: Tomas Pajdla, Tomas.Pajdla@esat.kuleuven.ac.be
% pajdla@vision.felk.cvut.cz
% 02/06/95 ESAT-... |
github | PavelTrutman/FocalNet-master | plottab.m | .m | FocalNet-master/deepag/bin/lib/utils/plottab.m | 3,298 | utf_8 | 28e08499116c9e63949445dc61558420 | %PLOTTAB Pajdla: Plots values from a matrix into a rectangular table
%
%
% function f = plottab(a,rLabel,cLabel,hLabel,format,fontSize)
%
% a = matrix to be plotted
% rLabel = matrix of strings to label rows of the table,
% default = ' '
% cLabel = matrix of strings to label columns of the table, i
... |
github | PavelTrutman/FocalNet-master | e3fit.m | .m | FocalNet-master/deepag/bin/lib/utils/e3fit.m | 5,462 | utf_8 | b272a4ec5d257050eb56caa9b62f49f0 | %E3FIT Pajdla: Finds E(3) transformation minimizing LMSq/LSQ distance between two data sets
%
%
% function [E,Ve,rW,res,rs,rres,dX] = e3fit(X1,X2,W,mode,par)
%
% X1,X2 = two registered cloud of 3-D points, one point ~ one row
% W = a vector of weights, if missingt, ones are used
% mode = 0 or missi... |
github | PavelTrutman/FocalNet-master | strsplit.m | .m | FocalNet-master/deepag/bin/lib/utils/strsplit.m | 291 | utf_8 | cb2d813d07806d01a8d0cb6eedb5233b | % sp = strsplit(s,d) - split a string into substrings delimited by d
%
% s ... a string
% d ... a delimitor see strtok
% sp ... a cell array of substrings
function sp = strsplit(s,d)
for i=1:length(s)
[si, s] = strtok(s,d);
if isempty(si), break; end
sp{i} = si;
end |
github | PavelTrutman/FocalNet-master | trandn.m | .m | FocalNet-master/deepag/bin/lib/utils/trandn.m | 894 | utf_8 | 376165a0bcb9f57d687f0729a1aa91ad | % v = trandn(sz,sigma,min,max[,nit]) - truncated randn generator such that min <= c <= max
%
% sz = array of sizes passed to randn(size)
% sigma = sigma used as sigma*randn(size)
% min, max = truncation limits
% nit = number of itterations
% v = random number matrix of size sz
% (c) T.Pa... |
github | PavelTrutman/FocalNet-master | sdiv.m | .m | FocalNet-master/deepag/bin/lib/utils/sdiv.m | 614 | utf_8 | 251af3e3170f3c5f740b67ecb43f20e1 | %SDIV Pajdla: Element-wise division with 1/0 replaced by 0
%
% function d = sdiv(x,y)
%
% d = x ./ y <=> y != 0
% = 0 otherwise
%
% See also ./
% Author: Tomas Pajdla, Tomas.Pajdla@esat.kuleuven.ac.be
% pajdla@vision.felk.cvut.cz
% 04/09/94 ESAT-MI2, KU Leuven ... |
github | PavelTrutman/FocalNet-master | vec2lbls.m | .m | FocalNet-master/deepag/bin/lib/utils/vec2lbls.m | 1,580 | utf_8 | c6d579f8074eed14a8f21468d25aad9c | %VEC2LBLS Pajdla: Converts vector elements into a string matrix
%
%
% function lbl = vec2lbls(vec,format)
%
% vec = vector of numbers ( integers )
% lbl = matrix having strings of the same length stored in rows.
% It can be combined with the imgtext(_,_,lbl) to label
% pixels in an ima... |
github | PavelTrutman/FocalNet-master | dtctspot-v1.m | .m | FocalNet-master/deepag/bin/lib/utils/dtctspot-v1.m | 4,553 | utf_8 | c19b0a702e98280f8bc28327d2c1cbd1 | % [iml,l,imt] = dtctspot(im,decim,dthrprc,minR,maxR,dThr,doShow) - detect bright spots
%
% im ... m x n x 1 image
% decim ... 1:decim:end image decimation
% dthrprc... thereshold 0<1 ... percentile
% >=1 ... absolute value
% minR ... bright center outer radius
% maxR ... dark p... |
github | PavelTrutman/FocalNet-master | sampleq.m | .m | FocalNet-master/deepag/bin/lib/utils/sampleq.m | 710 | utf_8 | 854abd1f13d95599bb9619bd0f72544a | % x = sampleq(q[,N]) - sample conic q
%
% q ... 3x3 conic
% N ... number of points on the conic (100 inplicit)
% x ... 3xN points on the conic (homogneous coords,
% use h2a to get affine coords)
% = [] if no real points
% (c) T.Pajdla, www.neovision.cz, Oct 25, 2004
function [x,e,V] = sampl... |
github | PavelTrutman/FocalNet-master | cellfunuo.m | .m | FocalNet-master/deepag/bin/lib/utils/cellfunuo.m | 289 | utf_8 | c7ce9be358cd4703596d50fa3c10ed7c | % o = cellfunuo(varargin) => o = cellfun(varargin,'UniformOutput',false)
%
% @f = reference to a function f
% c = cell
% o = cellfun(varargin,'UniformOutput',false)
% pajdla@cvut.cz, 2016-04-22
function o = cellfunuo(varargin)
o = cellfun(varargin{:},'UniformOutput',false);
|
github | PavelTrutman/FocalNet-master | robustgfit.m | .m | FocalNet-master/deepag/bin/lib/utils/robustgfit.m | 1,620 | utf_8 | 1aa9f7169d1e8d76c62700f8fdc129a7 | % [m,s,d,j] = robustgfit(t,x,n,mi,si,tol,sim) - Robust Guassian distribution fit
%
% t ... samples
% x ... abscisa
% n ... frequencies
% mi ... initial mean
% si ... imitial std
% tol ... tolerance (to multiply s)
% sim ... {'Likelihood','DistrDiff'}
% m ... mean
% s ... sigma
%... |
github | PavelTrutman/FocalNet-master | detsum.m | .m | FocalNet-master/deepag/bin/lib/utils/detsum.m | 1,954 | utf_8 | 70e92a0698162d51bae738e577bc8598 | %function [d,m] = detsum(a,A) - determinant of a matrix pencil
%
% a ... pencil variables a(i) = 0 ... free variable
% a(i) =\= 0 ... a(i) evaluated
% A(:,:,i) ... matrices of the pencil
% d ... coefficients of the polynomial det(sum_i a(i)*A(:,:,i))
% with monomials of free variab... |
github | PavelTrutman/FocalNet-master | str2ix.m | .m | FocalNet-master/deepag/bin/lib/utils/str2ix.m | 290 | utf_8 | 04e29bc11bc4a3d3721ad6477f676a81 | % function i = str2ix(c,s) - index of string occurences in a celarray
% c = celarray of strings
% s = celarray of strings
% i = celarray of indices of occurences of elements of s in c
function i = str2ix(c,s)
for j=1:length(s)
i{j} = find(~cellfun(@isempty,strfind(c,s{j})));
end |
github | PavelTrutman/FocalNet-master | plotline.m | .m | FocalNet-master/deepag/bin/lib/utils/plotline.m | 2,356 | utf_8 | efe8ffef8dfbb8a2d4aa77a144add48e | % h = plotline(l[,rect]) - Line plotting clipped by a rectangle
%
% l ... 3 x n line vectors
% rect ... clipping rectangle [minx maxx miny maxy]
% obtained from axis if missing, uses the first two coordinates
% h ... line hadles
%
% See also LINE, AXIS
% (c) T.Pajdla, www.ne... |
github | PavelTrutman/FocalNet-master | cellfoldl.m | .m | FocalNet-master/deepag/bin/lib/utils/cellfoldl.m | 448 | utf_8 | 5e4508362183789d5579ad467676e703 | % o = cellfoldl(@f,c) - f(c{1}, ... f(c{end-2},f(c{end-1},c{end})))
%
% @f = reference to a function f
% c = cell with at least 2 elements
% o = f(c{1}, ... f(c{end-2},f(c{end-1},c{end}))) (by reccurent calls)
% pajdla@cmp.felk.cvut.cz, 2015-05-08
function o = cellfoldl(f,c)
if numel(c)==2
o = f(c{1},... |
github | PavelTrutman/FocalNet-master | imagescrgb.m | .m | FocalNet-master/deepag/bin/lib/utils/imagescrgb.m | 249 | utf_8 | 9bfef1158f4076fe49abd1e85d1cc34f | % h = imagescrgb(im) - Imagesc for RGB image
%
% im ... image
% h ... handle to image object
% (c) T.Pajdla
% Aug 9, 2004
function h = imagescrgb(im)
im = double(im);
im = im - min(im(:));
im = im / max(im(:));
h = imagesc(im);
|
github | PavelTrutman/FocalNet-master | corton.m | .m | FocalNet-master/deepag/bin/lib/utils/corton.m | 1,461 | utf_8 | 2298c1d3197fce7e6e845abe7045351b | %CORTON Pajdla: Closest ortonormal matrix with one defined row
%
% function [S,fe] = corton(R,n)
%
% R = 3-D rotation matrix
% n = 3-D vector
% S = rotation matrix, S = [s1 s2 n]
% norm(R(:,1:2)-S(:,1:2),'frobenius') -> min for all S \in SO(3)
% fe = frobenius... |
github | PavelTrutman/FocalNet-master | gsam2e.m | .m | FocalNet-master/deepag/bin/lib/utils/gsam2e.m | 169 | utf_8 | bcf482683894d0faf0fdb42dd30689b6 | % E = gSAM2E(A) - Graph symmetric adjacency matrix A to edge list E
% 2015-05-10 pajdla@cmp.felk.cvut.cz
function E = gSAM2E(A)
[i,j] = find(triu(A));
E = [i j]; |
github | PavelTrutman/FocalNet-master | imslider.m | .m | FocalNet-master/deepag/bin/lib/utils/imslider.m | 1,049 | utf_8 | 21fd8fa0802fe9eca0895a106cbfeca7 | % imslider(im,lbl,n) - image slider
%
% im = {} of images
% lbl = {} of text labels to be ploted under images, can be omitted or []
% n = the number of visible images, default = 3
% T. Pajdla, pajdla@cmp.felk.cvut.cz
% 3 Nov 2009
function imslider(im,lbl,n)
if nargin<3
n=3;
end
if nargin<2 || ise... |
github | PavelTrutman/FocalNet-master | geplot.m | .m | FocalNet-master/deepag/bin/lib/utils/geplot.m | 1,875 | utf_8 | b3a89b7e6b5ede2e49506b541bca8dae | % geplot(A[,X,L,opt])- plot a graph
%
% A = n x n edge weight matrix, i.e. A(i,j) = weight of edge i-j
% X = 2(3) x n vertex coordinates, regular n-gon if =[] or missing
% L = labels matrix of strings or a vector of numbers, can be omited
% opt = string of vertex plot options
% T. Pajdla, pajdla@cmp.felk.cvut.... |
github | PavelTrutman/FocalNet-master | replica.m | .m | FocalNet-master/deepag/bin/lib/utils/replica.m | 669 | utf_8 | acb57e0faeda4f02d4d7f9332113d0c4 | %REPLICA Pajdla: Replicates a matrix according to the pattern
%
%
% function rv = replica(v,p)
%
% v = input matrix
% p = replication pattern matrix
% rv = replicated matrix
%
% See also: KRON, CHRFILL.
% Author: Tomas Pajdla, Tomas.Pajdla@esat.kuleuven.ac.be
% pajdla@vision.fel... |
github | PavelTrutman/FocalNet-master | line3d.m | .m | FocalNet-master/deepag/bin/lib/utils/line3d.m | 609 | utf_8 | 6fcd856f9fc436a594ea582706bdbe76 | %h = line3d(X,L,pars) - single matrix 3 x N line plot in 3D
%
% X ... single matrix 3 x N
% L ... 2 x M indices of lines [[start1; end1], ...] into X
%
% See also LINE
% pajdla@cmp.felk.cvut.cz, 2015-09-26
function h = line3d(varargin)
X = varargin{1};
L = varargin{2};
if size(X,1)==3
h0 = lin... |
github | PavelTrutman/FocalNet-master | shape2d.m | .m | FocalNet-master/deepag/bin/lib/utils/shape2d.m | 1,350 | utf_8 | 4193cf9cb5851f84ef36530cff368b86 | %SHAPE2D Pajdla: Computes a shape from unorganized points in 2D
%
% function e = shape2d(x)
%
% x = coordinates of vertices of triangulation [x1,y1 ; x2,y2 ; ...]
% e = edges ~ pairs of indices into x
%
% See also: DEALUNAY
% Author: ... |
github | PavelTrutman/FocalNet-master | chi2cmp.m | .m | FocalNet-master/deepag/bin/lib/utils/chi2cmp.m | 2,062 | utf_8 | 4c94913f03ef6d9f6e53f8e32b6585c5 | %CHI2CMP Pajdla: Compares a distribution of squared residuals with a chi2 distribution
%
% function chi2cmp(res2,ni)
%
% res = column vector of squared residuals res2 = res.^2
% ni = degrres of freedom for chi^2 distribution
%
% See also: CHI2RND, QQPLOT, CUMHIST.
% Author: Tomas Pajdla, Tomas.Pajdl... |
github | PavelTrutman/FocalNet-master | subscreen.m | .m | FocalNet-master/deepag/bin/lib/utils/subscreen.m | 626 | utf_8 | 60abb84c743f3766dc3a6bbd6395e3ff | % i = subscreen(r,c,rs,cs,is) - subfig helper: index i into r x c screen from index is into rs([1 2]) x cs([1 2]) subscreen range
% pajdla@cmp.felj.cvut.cz 2015-09-16
function i = subscreen(r,c,rs,cs,is)
if ~all(rs>0 & rs<=r) || ~all(cs>0 & cs<=c), error('rs, cs out of range'); end
sz = [diff(rs)+1 diff(cs)+1];... |
github | PavelTrutman/FocalNet-master | gesymix.m | .m | FocalNet-master/deepag/bin/lib/utils/gesymix.m | 571 | utf_8 | 9984befc525d81ee727a9d9fd5dbe20b | % i = gesymix(e) - Match symetric edges of a graph
%
% e = edges - n x 2 matrix of vertex numbers
% i = n x 2 index = [i1 i2] such that e(i1,[1 2]) = e(i2,[2 1]), sorted lex i(1)>i(2)
% 2015-08-16 pajdla@cmp.felk.cvut.cz
function ix = gesymix(e)
s = max(e(:))*[1 1]; % size of the adjacency matrix
i1 = sub2in... |
github | PavelTrutman/FocalNet-master | gpos.m | .m | FocalNet-master/deepag/bin/lib/utils/gpos.m | 6,775 | utf_8 | 0d1e959038487d1eca2ae24e30d2298b | function [out1,out2,out3] = ginput(arg1)
%GINPUT Graphical input from mouse.
% [X,Y] = GINPUT(N) gets N points from the current axes and returns
% the X- and Y-coordinates in length N vectors X and Y. The cursor
% can be positioned using a mouse. Data points are entered by pressing
% a mouse button or any k... |
github | PavelTrutman/FocalNet-master | fullurl.m | .m | FocalNet-master/deepag/bin/lib/utils/fullurl.m | 146 | utf_8 | 59142a698bcf0378fe1e9e7a2e7e6b19 | %url = fullurl(varargin) - fullurl consruction (see fullfile)
function u = fullurl(varargin)
u = fullfile(varargin{:});
u = strrep(u,'\','/'); |
github | PavelTrutman/FocalNet-master | vidx.m | .m | FocalNet-master/deepag/bin/lib/utils/vidx.m | 1,005 | utf_8 | bab2a27015e6e8a16b5205ebffaeff6c | %VIDX Pajdla: Indexes matrices by a vector
%
% function b = vidx(a,i[,j])
%
% a = input matrix
% i,j = index vectors, must have the same size
% or
% i = index of size m x n, m ... dimension of a
% n ... length of the index
% b = a(i,j)
% or
% b... |
github | PavelTrutman/FocalNet-master | findr.m | .m | FocalNet-master/deepag/bin/lib/utils/findr.m | 391 | utf_8 | f00b554785beb95f16f4918f4131be72 | % ix = findr(A,r) - find row r in a matrix (cellarray od vectors) A
%
% A = m x n matrix
% r = 1 x n vector
% ix = index such that A(ix,:)==ones(size(ix,1),1)*r
% 2015-09-06 pajdla@cmp.felk.cvut.cz
function ix = findr(A,r)
if iscell(A)
r = r(:);
ix = cellfun(@(x) all(x(:)==r),A);
else
r = r(:... |
github | PavelTrutman/FocalNet-master | trckspot.m | .m | FocalNet-master/deepag/bin/lib/utils/trckspot.m | 6,799 | utf_8 | 925c2dfc0c9dd5b0dd89fbff67c81027 | % [mx,nx,x,A,o,l,il] = trckspot(im,decim,dthrprc,minR,maxR,dThr,doShow) - detect bright spots
%
% im ... m x n x 1 image
% decim ... 1:decim:end image decimation
% dthrprc... thereshold 0<1 ... percentile
% >=1 ... absolute value
% minR ... bright center outer radius
% maxR ...... |
github | PavelTrutman/FocalNet-master | genp.m | .m | FocalNet-master/deepag/bin/lib/utils/genp.m | 1,450 | utf_8 | 0d0e9c065258576ce36e7df0ae6d0fe4 | % [B,d] = genp(A[,tol]) - Gaussian elimination - no pivoting
%
% A ... matrix
% tol ... tollerance, max(size(A))*eps(class(A))*norm(A,'inf') implicit
% B ... eliminated matrix
% d ... removed rows
%
% See also RREF
% T. Pajdla, 13 June 2006
% pajdla@neovision.cz
function [B,d] = genp(A,tol)
[m,n] =... |
github | PavelTrutman/FocalNet-master | smplgaus.m | .m | FocalNet-master/deepag/bin/lib/utils/smplgaus.m | 779 | utf_8 | cf894fcbfb7abf3a0c1294bedbf5cfa1 | %SMPLGAUS Pajdla: Values from the Gaussian distribution function
%
% function g = smplgaus(x,mu,s)
%
% x = abscisae vector
% mu = mean value
% s = sigma
%
% See also: GAUSMIX, RANDN.
% Author: Tomas Pajdla, Tomas.Pajdla@esat.kuleuven.ac.be
% pa... |
github | PavelTrutman/FocalNet-master | vlist.m | .m | FocalNet-master/deepag/bin/lib/utils/vlist.m | 427 | utf_8 | 56bd575937efc263a16495a5221ea223 | % L = vlist(v) - Celarray of indices of occurences of different positive integer values in v
%
% v = a vector of positive integres (index)
% L = {[i1 i2 i3 ...], ...} cellaray of lists of occurenves of values in v L{i} = find(v==i)
% 2015-09-06 pajdla@cmp.felk.cvut.cz
function L = vlist(v)
mV = max(v(:)); % ... |
github | PavelTrutman/FocalNet-master | cumhist.m | .m | FocalNet-master/deepag/bin/lib/utils/cumhist.m | 1,405 | utf_8 | 989a64f6b125f7b30f7d361d856fe4d5 | %CUMHIST Pajdla: Plots a histogram and a cummulative histogram
%
% function [N,X,cX,f]=cumhist(mat,hnum,mode)
%
% mat = 1-D or 2-D matrix
% hnum = number of bins
% mode = 0 ... normalize histogram so that the maximum = 1 (implicit)
% 1 ... normalize histogram so that the area = 1
% ... |
github | PavelTrutman/FocalNet-master | imaqcam.m | .m | FocalNet-master/deepag/bin/lib/utils/imaqcam.m | 3,224 | utf_8 | 7809ec9b2c3a6b9cbcba6f29ca87273c | % h = imaqcam(varargin) - Live camera GUI
%
% h = imaqcam(cam[,mode,cmd]) ... creates the live camera gui and opens
% the camera in a given 'mode'
% [implicit if missing or '']
% cmd ... {'preview','close'}
%
% ... |
github | PavelTrutman/FocalNet-master | digicirc.m | .m | FocalNet-master/deepag/bin/lib/utils/digicirc.m | 345 | utf_8 | ce87e9c308dbe686a9db643a42e6079e | % im=digicirc(r[,mr]) - Binary image of a digital circle
%
% r ... radius
% mr ... window radius
% im ... image of the circle
% T. Pajdla, pajdla@neovision.cz, 2005 Aug 4
function im=digicirc(r,mr)
if nargin<2
mr=r;
end
D = 2*mr+1;
x = -mr:mr;
A = ones(D,1) * (x.^2) + (x.^2)' * ones(1,D);
im ... |
github | PavelTrutman/FocalNet-master | subfig.m | .m | FocalNet-master/deepag/bin/lib/utils/subfig.m | 1,811 | utf_8 | 7c3f7df5264dad30a0b87c0d7c8aeb75 | %SUBFIG Pajdla: Opens figure in the specified part of the screen
%
% function f = subfig(rows,cols,ord,f)
% [left bottom height width]
%
% rows = number of row figures per screen
% cols = number of column figures per screen
% ord = order of figure (row oriented index), see SUBP... |
github | PavelTrutman/FocalNet-master | plotx2y.m | .m | FocalNet-master/deepag/bin/lib/utils/plotx2y.m | 1,294 | utf_8 | ab6f9bac404350a2e44e3825b2191a30 | % h = plotx2y(x,y[,s,xp,yp,vp]) - plot a difference fied from x to y
%
% x,y ... 2 x n real matrix
% s ... scale (implicit = 1)
% xp ... x plot string ([] to ignore, implicit blue dot)
% yp ... y plot string ([] to ignore, implicit green dot)
% vp ... y-x plot string ([] to ignore, implicit red line)
% (... |
github | PavelTrutman/FocalNet-master | gam2e.m | .m | FocalNet-master/deepag/bin/lib/utils/gam2e.m | 165 | utf_8 | 01204c86b05f0319517ce3ee43806c78 | % E = gAM2E(A) - Graph non-symmetric adjacency matrix A to edge list E
% 2015-05-10 pajdla@cmp.felk.cvut.cz
function E = gAM2E(A)
[i,j] = find(A);
E = [i j]; |
github | PavelTrutman/FocalNet-master | text3d.m | .m | FocalNet-master/deepag/bin/lib/utils/text3d.m | 525 | utf_8 | 9d4d9dd094b3a9564229133740678fc3 | %h = text3d(X,T,pars) - single matrix 3 x N text in 3D
%
% X ... single matrix 3 x N
% T ... text labels, cellarray or padded matrix with a string per row
% pars ... other text pars
%
% See also text
% pajdla@cmp.felk.cvut.cz, 2015-09-26
function h = text3d(varargin)
X = varargin{1};
if size(X,1)==... |
github | PavelTrutman/FocalNet-master | ioutofn.m | .m | FocalNet-master/deepag/bin/lib/utils/ioutofn.m | 389 | utf_8 | e7dd95c6b0c42c18894f552feebe415e | % s = ioutofn(i,n[,maxn]) - fprintf '[i/n]'
%
% i = current value
% n = out of n
% maxn = maximal value of n to determine the width of printing (= n if missing)
% s = string
% 2015-05-10 pajdla@cmp.felk.cvut.cz
function s = ioutofn(i,n,maxn)
if nargin<3 maxn = n; end
N = length(sprintf('%d',maxn)); % max n... |
github | PavelTrutman/FocalNet-master | defprintf.m | .m | FocalNet-master/deepag/bin/lib/utils/defprintf.m | 429 | utf_8 | 22308f04a5614cf1773218cda183ac4f | % nbytes = refprintf(vargin) - delete space for fprintf
%
% varargin, nbytes ... nbytes = fprintf(varargin)
% 2015-08-23 pajdla@cmp.felk.cvut.cz
function nbytes = defprintf(varargin)
switch nargin
case 1
nbytes = length(varargin{1});
fprintf(repmat('\b',1,nbytes));
otherwise
... |
github | PavelTrutman/FocalNet-master | sirpi.m | .m | FocalNet-master/deepag/bin/lib/utils/sirpi.m | 6,349 | utf_8 | b55b9f344632534a67d5b84bdfcd23d4 | %sirpi - pei: Shift invariant representation of a panoramic image.
%
% function [ir,fi,fir,e] = sirpi(im [,method,arg1,arg2,arg3])
%
% im = image. Must be of odd size. If the size is
% even, the last row and column are cutted
% off.
% ir = shift invariant representation
% f... |
github | PavelTrutman/FocalNet-master | m2v.m | .m | FocalNet-master/deepag/bin/lib/utils/m2v.m | 167 | utf_8 | 421b0c6da047faf6be9965c78d41087e | % v = m2v(M) => vectorization of M: v = M(:)
%
% M = mutlidimensional matrix
% v = column vector
% pajdla@cvut.cz, 2016-04-24
function v = m2v(M)
v = M(:);
|
github | PavelTrutman/FocalNet-master | dtctspot.m | .m | FocalNet-master/deepag/bin/lib/utils/dtctspot.m | 3,593 | utf_8 | 190bf9377c45d324ad205134c953d15b | % [o,A,x] = dtctspot(im,decim,dthrprc,minR,maxR,dThr,msk,doShow) - detect bright spots
%
% im ... m x n x 1 image
% decim ... 1:decim:end image decimation
% dthrprc... thereshold 0<1 ... percentile
% >=1 ... absolute value
% minR ... bright center outer radius
% maxR ... dark p... |
github | PavelTrutman/FocalNet-master | imnorm.m | .m | FocalNet-master/deepag/bin/lib/utils/imnorm.m | 239 | utf_8 | cda9d612526b96dd31329ba4e1ff3058 | % imn = imnorm(im) - Normalize im for imagesc
%
% im ... image
% imn ... normalized 0<=imn<=1, double
% (c) T.Pajdla
% June 30, 2007
function im = imnorm(im)
im = double(im);
im = im - min(im(:));
im = im / max(im(:));
|
github | PavelTrutman/FocalNet-master | plotq.m | .m | FocalNet-master/deepag/bin/lib/utils/plotq.m | 596 | utf_8 | f4be1fe2233364f5d29c193b3a36cfeb | % f = plotq(q[,opts]) - plot conic q
%
% q ... 3x3 conic
% f ... figure handle returned by plot
% opts ... = [] ... f = point coordinates
% otherwise ... plot options plot(...,...,opts)
% (c) T.Pajdla, www.neovision.cz, Oct 25, 2004
function f = plotq(q,opts)
if nargin < 2
opts... |
github | PavelTrutman/FocalNet-master | gpcreate.m | .m | FocalNet-master/deepag/bin/lib/utils/gpcreate.m | 1,677 | utf_8 | 0e2b2385193989dbf32a6f2e9d5379c0 | %GPCREATE Pajdla: Creates a Gaussian pyramid
%
% p = gpcreate(im,levels,flt)
%
% Each level of the pyramid p is created by the subsampling of the previous
% level convolved with the filter flt.
%
% im = input image
% flt = filter matrix, implicitly flt = [1/4 1/2 1/4]' * [1/4 1/2 1/4];
% levels = number of ... |
github | PavelTrutman/FocalNet-master | e2gsam.m | .m | FocalNet-master/deepag/bin/lib/utils/e2gsam.m | 176 | utf_8 | abdfc54939095ff2973820c914d82c60 | % A = E2gSAM(E) - Edge list E to graph symmetric adjacency matrix A
% 2015-09-06 pajdla@cmp.felk.cvut.cz
function A = e2gsam(E)
A = e2gam(E);
A = A+A'-diag(diag(A));
|
github | PavelTrutman/FocalNet-master | e2svel.m | .m | FocalNet-master/deepag/bin/lib/utils/e2svel.m | 421 | utf_8 | 4c46d547854a8678c1085bd91dbb1f1d | % e = e2svel(E) - Edge list E to symmetric vertex edge list
%
% E = n x 2 matrix [[v1,v2], ...] with vertice v1, v2
% e = {[e1 e2 e3 ...], ...} cellaray of lists of edges ids incident to a vertex
% 2015-09-06 pajdla@cmp.felk.cvut.cz
function e = e2svel(E)
mV = max(E(:)); % maximal vertex id
e = cell(mV,1); ... |
github | PavelTrutman/FocalNet-master | APT_compile.m | .m | FocalNet-master/deepag/bin/lib/APT/APT_compile.m | 8,732 | utf_8 | d652f0df8d667c85399fa6b1ac8117ab | function APT_compile(varargin)
global APT_PARAMS;
if isempty(APT_PARAMS)
APT_params();
end
%======================================================================
params = struct('NoJVM', 1, ...
'SingleThread', 1, ...
'Ignore', {{}});
... |
github | PavelTrutman/FocalNet-master | APT_params.m | .m | FocalNet-master/deepag/bin/lib/APT/APT_params.m | 11,917 | utf_8 | dcd708f92cb96c277b891acf0c9a05f7 | function APT_params()
global APT_PARAMS;
%!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!%
%!! !!%
%!! This file is not loaded twice: if you modify it, run !!%
%!! 'APT_params' to update the par... |
github | PavelTrutman/FocalNet-master | APT_run_fake.m | .m | FocalNet-master/deepag/bin/lib/APT/APT_run_fake.m | 6,696 | utf_8 | 4483aa005e6165557b9859e914ecfedd | function varargout = APT_run(task, varargin)
%======================================================================
params = struct( ...
'CombineArgs', 0, ...
'Libs', {{}}, ...
'ShellVar', {{}}, ...
... ... |
github | PavelTrutman/FocalNet-master | APT_run.m | .m | FocalNet-master/deepag/bin/lib/APT/APT_run.m | 47,906 | utf_8 | 2a201e3e3fdae928a0f3516d9d4531de | function varargout = APT_run(task, varargin)
global APT_PARAMS JOB_INFO;
if isempty(APT_PARAMS)
APT_params();
end
%======================================================================
params = struct( ...
'ClusterID', 0, ...
... |
github | PavelTrutman/FocalNet-master | APT_entry_point.m | .m | FocalNet-master/deepag/bin/lib/APT/APT_entry_point.m | 9,258 | utf_8 | e41dae1b95d16c680e75c3454f891424 | function APT_entry_point(task_id, job_id, fun, clusterID)
global APT_PARAMS JOB_INFO;
APT_params();
clusterID = str2double(clusterID);
drive = get_drive_path(clusterID);
args_dir = fullfile(drive, APT_PARAMS.temp_dir, task_id, 'args');
res_dir = fullfile(drive, APT_PARAMS.temp_d... |
github | PavelTrutman/FocalNet-master | pargui.m | .m | FocalNet-master/deepag/bin/lib/pargui/pargui.m | 6,996 | utf_8 | 6bdf8b0787cabf2ff00371ed3b3dc43c | % psg = pargui(ps,parname,gsz,xname,fname) - GUI for experiments
%
% ps ... structure with ps.ParName1, ps.ParName2, ...
% parname ... the name of the structure as a string
% gsz ... the size of the grid for buttons [rnum cnum]
% xname ... callback function name
% fname ... callback butt... |
github | bethany/o2model-master | hfbulktc.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/air_sea/hfbulktc.m | 11,877 | utf_8 | f57ca3e55e72511e31eb4247c8151775 | function A=hfbulktc(ur,zr,Ta,zt,rh,zq,Pa,Ts,sal,dlw,dsw,nsw)
% HFBULKTC: computes sensible and latent heat fluxes and other variables.
% A=HFBULKTC(ur,zr,Ta,zt,rh,zq,Pa,Ts,sal,dlw,dsw,nsw) computes the following:
%
% Hs = sensible heat flux INTO ocean [W/m^2]
% Hl = latent heat flux INTO o... |
github | bethany/o2model-master | cool_skin.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/air_sea/cool_skin.m | 7,518 | utf_8 | c498431a06857156738bb02881093d6b | function [delta,Dter,Dqer] = cool_skin(sal,Tw,rhoa,cpa,Pa, ...
U_star,T_star,Q_star, ...
dlw,dsw,nsw,delta,g,Rgas, ...
CtoK,Qsat_coeff)
% COOL_SKIN: compute the cool-skin parameters.
% COOL_... |
github | bethany/o2model-master | hfbulktc_speed.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/air_sea/hfbulktc_speed.m | 12,258 | utf_8 | 58921b3e65881e9bc27ce88e3a96436d | % As hfbulktc.m but in order to speed up the function, the iteration loop is
% changed from "if" to "while" structure by TSA 05.09.03
function A=hfbulktc_speed(ur,zr,Ta,zt,rh,zq,Pa,Ts,sal,dlw,dsw,nsw)
% HFBULKTC: computes sensible and latent heat fluxes and other variables.
% A=HFBULKTC(ur,zr,Ta,zt,rh,zq,Pa,Ts,sa... |
github | bethany/o2model-master | reedcf.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/air_sea/reedcf.m | 3,943 | utf_8 | a868371ec818451f13265398804019c4 | function c = reedcf(yd,lat,dsw);
% REEDCF: computes daily mean cloud cover following Reed (1977).
% c = REEDCF(yd,lat,dsw) computes daily averaged cloud cover c from
% yearday, latitude, and measured insolation following Reed (1977), J. Phys.
% Oceanog., 7, 482-485. Assumes hourly input series are either both ... |
github | bethany/o2model-master | modelinputs_v12.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/v12/modelinputs_v12.m | 6,853 | utf_8 | f2f8ca11ae6207d5c802738438d47dce | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2005
%
% Module for reading input data and parameters
% Code checked by TSA, xx.03.2005
% Last modified by TSA, 15.08.2006 (Az replaced by In_Az 10.03.06; Possibility to have NaN in Global rad. series, 15.08.06)
fu... |
github | bethany/o2model-master | IOflow_v11.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/v12/IOflow_v11.m | 1,836 | utf_8 | 3fd8e614c653ec3dc38eb09d0a96c19c | % === MyLake model, version 1.1, 16.03.04 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2004
%
% Module for calculating river inflow and its effect on profiles of temperature and other state variables
% Code checked by TSA, 16.3.2004
% INPUTS:
% vertical arrays: z is model grid, Vz is layer volume, Tz la... |
github | bethany/o2model-master | heatflux_v12.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/v12/heatflux_v12.m | 3,866 | utf_8 | c2ac59002c564b594507ca488a499d58 | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2005
%
% Module for calculating heat fluxes and other physical parameters
% Code checked by TSA, 03.03.2005
% Last modified by TSA, 03.03.2005
function [Qsw,Qlw,Qsl,tau,Dayfrac,Dayfracheating] = heatflux_v12(t,GR,CC,Ta,Ra,P... |
github | bethany/o2model-master | solvemodel_v12.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/v12/solvemodel_v12.m | 60,047 | utf_8 | 75927e7e66ca36798d8207467775b362 | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2005
%
% Main module
% Code checked by TSA, xx.03.2005
% Last modified by TSA, 15.08.2006 (temperature profile sent to convection.m, Thermocline-bug corrected)
function [zz,Az,Vz,tt,Qst,Kzt,Tzt,Czt,Szt,Pzt,Chlzt,PPzt,DOPzt... |
github | bethany/o2model-master | sedimentheat_v11.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/v12/sedimentheat_v11.m | 957 | utf_8 | 651aaf0bdc6f47d157c158f80f7f0d6b | % === MyLake model, version 1.1, 16.03.04 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2004
%
% Module for calculating new temperature profile in sediments
% Code checked by TSA, 16.03.2004
function [Tzy_sed_updated] = sedimentheat_v11(Tzy_sed, K_sed, dt)
% Grid resolution in sediment is 0.2 m in the 0-2 lay... |
github | bethany/o2model-master | convection_v12_1a.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/v12/convection_v12_1a.m | 4,678 | utf_8 | ee28d5983f6a9c5e5efdd548047b73b6 | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2004
% VERSION 1.2.1a, based on convection_v12 (with three modified lines of code, marked with NEW!!!)
% Convection module
% Code checked by TSA, 07.03.05
% Last modified by TSA, 17.07.07
function [Tz,Cz,Sz,Pz,Chlz,PPz,D... |
github | bethany/o2model-master | convection_v12_1a.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/v12_1/convection_v12_1a.m | 4,672 | utf_8 | 1087d9c9e1b8a1e06675c40303b57baa | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2004
% VERSION 1.2.1a, based on convection_v12 (with three modified lines of code, marked with NEW!!!)
% Convection module
% Code checked by TSA, 07.03.05
% Last modified by TSA, 17.07.07
function [Tz,Cz,Sz,Pz,Chlz,PPz,D... |
github | bethany/o2model-master | solvemodel_v12_1b_ut.m | .m | o2model-master/SAS1A_alldata RCP 8.5/Mylake_v12/v12_1/solvemodel_v12_1b_ut.m | 56,687 | utf_8 | 8f54a141697b1c96494feb0d71369d88 | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2005
%
% VERSION 1.2.1 (two phytoplankton groups are included; variable Cz denotes
% this second group now. Frazil ice included + some small bug-fixes and code rearrangements. Using convection_v12_1a.m code)
%
% Main module
%... |
github | bethany/o2model-master | hfbulktc.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/air_sea/hfbulktc.m | 11,877 | utf_8 | f57ca3e55e72511e31eb4247c8151775 | function A=hfbulktc(ur,zr,Ta,zt,rh,zq,Pa,Ts,sal,dlw,dsw,nsw)
% HFBULKTC: computes sensible and latent heat fluxes and other variables.
% A=HFBULKTC(ur,zr,Ta,zt,rh,zq,Pa,Ts,sal,dlw,dsw,nsw) computes the following:
%
% Hs = sensible heat flux INTO ocean [W/m^2]
% Hl = latent heat flux INTO o... |
github | bethany/o2model-master | cool_skin.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/air_sea/cool_skin.m | 7,518 | utf_8 | c498431a06857156738bb02881093d6b | function [delta,Dter,Dqer] = cool_skin(sal,Tw,rhoa,cpa,Pa, ...
U_star,T_star,Q_star, ...
dlw,dsw,nsw,delta,g,Rgas, ...
CtoK,Qsat_coeff)
% COOL_SKIN: compute the cool-skin parameters.
% COOL_... |
github | bethany/o2model-master | hfbulktc_speed.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/air_sea/hfbulktc_speed.m | 12,258 | utf_8 | 58921b3e65881e9bc27ce88e3a96436d | % As hfbulktc.m but in order to speed up the function, the iteration loop is
% changed from "if" to "while" structure by TSA 05.09.03
function A=hfbulktc_speed(ur,zr,Ta,zt,rh,zq,Pa,Ts,sal,dlw,dsw,nsw)
% HFBULKTC: computes sensible and latent heat fluxes and other variables.
% A=HFBULKTC(ur,zr,Ta,zt,rh,zq,Pa,Ts,sa... |
github | bethany/o2model-master | reedcf.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/air_sea/reedcf.m | 3,943 | utf_8 | a868371ec818451f13265398804019c4 | function c = reedcf(yd,lat,dsw);
% REEDCF: computes daily mean cloud cover following Reed (1977).
% c = REEDCF(yd,lat,dsw) computes daily averaged cloud cover c from
% yearday, latitude, and measured insolation following Reed (1977), J. Phys.
% Oceanog., 7, 482-485. Assumes hourly input series are either both ... |
github | bethany/o2model-master | modelinputs_v12.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/v12/modelinputs_v12.m | 6,853 | utf_8 | f2f8ca11ae6207d5c802738438d47dce | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2005
%
% Module for reading input data and parameters
% Code checked by TSA, xx.03.2005
% Last modified by TSA, 15.08.2006 (Az replaced by In_Az 10.03.06; Possibility to have NaN in Global rad. series, 15.08.06)
fu... |
github | bethany/o2model-master | IOflow_v11.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/v12/IOflow_v11.m | 1,836 | utf_8 | 3fd8e614c653ec3dc38eb09d0a96c19c | % === MyLake model, version 1.1, 16.03.04 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2004
%
% Module for calculating river inflow and its effect on profiles of temperature and other state variables
% Code checked by TSA, 16.3.2004
% INPUTS:
% vertical arrays: z is model grid, Vz is layer volume, Tz la... |
github | bethany/o2model-master | heatflux_v12.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/v12/heatflux_v12.m | 3,866 | utf_8 | c2ac59002c564b594507ca488a499d58 | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2005
%
% Module for calculating heat fluxes and other physical parameters
% Code checked by TSA, 03.03.2005
% Last modified by TSA, 03.03.2005
function [Qsw,Qlw,Qsl,tau,Dayfrac,Dayfracheating] = heatflux_v12(t,GR,CC,Ta,Ra,P... |
github | bethany/o2model-master | solvemodel_v12.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/v12/solvemodel_v12.m | 63,537 | utf_8 | d2c9f44d5e4bfdc87ec5788b8e30da15 | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2005
%
% Main module
% Code checked by TSA, xx.03.2005
% Last modified by TSA, 15.08.2006 (temperature profile sent to convection.m, Thermocline-bug corrected)
function [zz,Az,Vz,tt,Qst,Kzt,Tzt,Czt,Szt,Pzt,Chlzt,PPzt,DOPzt... |
github | bethany/o2model-master | sedimentheat_v11.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/v12/sedimentheat_v11.m | 957 | utf_8 | 651aaf0bdc6f47d157c158f80f7f0d6b | % === MyLake model, version 1.1, 16.03.04 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2004
%
% Module for calculating new temperature profile in sediments
% Code checked by TSA, 16.03.2004
function [Tzy_sed_updated] = sedimentheat_v11(Tzy_sed, K_sed, dt)
% Grid resolution in sediment is 0.2 m in the 0-2 lay... |
github | bethany/o2model-master | convection_v12_1a.m | .m | o2model-master/SAS1A_2layer/Mylake_v12/v12/convection_v12_1a.m | 4,678 | utf_8 | e94636301a8b5e1e69f8658c854900ca | % === MyLake model, version 1.2, 15.03.05 ===
% by Tom Andersen & Tuomo Saloranta, NIVA 2004
% VERSION 1.2.1a, based on convection_v12 (with three modified lines of code, marked with NEW!!!)
% Convection module
% Code checked by TSA, 07.03.05
% Last modified by TSA, 17.07.07
function [Tz,Cz,Sz,Pz,Chlz,PPz,D... |
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