plateform stringclasses 1
value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | mccahill/docker-novnc-fmri-master | spm_cfg_con.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_con.m | 29,833 | utf_8 | 14db0b3d8381fcdedea762cfe2a4d700 | function con = spm_cfg_con
% SPM Configuration file for contrast specification
%__________________________________________________________________________
% Copyright (C) 2005-2013 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_con.m 5652 2013-09-25 09:36:22Z volkmar $
%---------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_cfc.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_cfc.m | 4,872 | utf_8 | 0cf018c7ac770b0809ed0e3af27133c4 | function cfc = spm_cfg_eeg_cfc
% Configuration file for M/EEG cross-frequency coupling analysis
%__________________________________________________________________________
% Copyright (C) 2014 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_cfc.m 6211 2014-09-29 10:17:49Z vladimir $
%----... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_headmodel.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_headmodel.m | 10,807 | utf_8 | 65cb76648a4eb342e661377e5c2f8941 | function headmodel = spm_cfg_eeg_inv_headmodel
% Configuration file for specifying the head model for source reconstruction
%__________________________________________________________________________
% Copyright (C) 2010-2013 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_headmodel.m 6... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_average.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_average.m | 3,741 | utf_8 | a67b98d9d0e2bedaa9208f50b5a5422d | function average = spm_cfg_eeg_average
% configuration file for M/EEG epoching
%_______________________________________________________________________
% Copyright (C) 2008-2012 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_average.m 5624 2013-08-30 11:06:38Z vladimir $
rev = '$Rev: 5624 $... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_crop.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_crop.m | 3,045 | utf_8 | 8395e18157f0238709cf5d46529e1b09 | function crop = spm_cfg_eeg_crop
% configuration file for cropping
%__________________________________________________________________________
% Copyright (C) 2009-2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_crop.m 5652 2013-09-25 09:36:22Z volkmar $
%-----------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_fuse.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_fuse.m | 1,635 | utf_8 | 08a26e7d5cb56870a7b01eac1b3f3f75 | function fuse = spm_cfg_eeg_fuse
% configuration file for fusing M/EEG files
%_______________________________________________________________________
% Copyright (C) 2008-2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_fuse.m 5377 2013-04-02 17:07:57Z vladimir $
rev = '$Rev: 5377 $';
... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_reorient.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_reorient.m | 5,840 | utf_8 | 1994e14df6660761d8b238ad044defb6 | function reorient = spm_cfg_reorient
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_reorient.m 5652 2013-09-25 09:36:22Z vo... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_fmri_design.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_fmri_design.m | 42,444 | utf_8 | aedbdfe82716547b648cd5c4c9993a73 | function fmri_design = spm_cfg_fmri_design
% SPM Configuration file for fMRI model specification (design only)
%_______________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_design.m 6088 2014-07-03 17:57:09Z guillaume $
%... |
github | mccahill/docker-novnc-fmri-master | spm_make_manual.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_make_manual.m | 7,088 | utf_8 | 91ad29661aa1b4e86db2a6b2f111b986 | function spm_make_manual(c)
% Convert a job configuration tree into a series of LaTeX documents
%__________________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_make_manual.m 6163 2014-09-11 12:27:04Z guillaume $
... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_voi.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_voi.m | 14,764 | utf_8 | d1c69ecfadcc2369fb46fdae09d94e9e | function voi = spm_cfg_voi
% SPM Configuration file for VOIs
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Guillaume Flandin
% $Id: spm_cfg_voi.m 5652 2013-09-25 09:36:22Z volkmar $
% ------------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_coreg.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_coreg.m | 15,576 | utf_8 | 3ce1d6c6db4b409a4723bf68cca540ee | function coreg = spm_cfg_coreg
% SPM Configuration file for Coregister
%__________________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_coreg.m 6148 2014-09-03 15:49:04Z guillaume $
%-------------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_collapse_timefreq.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_collapse_timefreq.m | 2,644 | utf_8 | 0cb0944db82f137a54a3cbe6576ae5d0 | function collapse = spm_cfg_eeg_collapse_timefreq
% configuration file for within-image averaging
%__________________________________________________________________________
% Copyright (C) 2009-2013 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_collapse_timefreq.m 5652 2013-09-25 09:36:2... |
github | mccahill/docker-novnc-fmri-master | spm_run_voi.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_run_voi.m | 7,937 | utf_8 | 8cabce73537dfd3909c9fc698f1d7925 | function out = spm_run_voi(job)
% SPM job execution function
% takes a harvested job data structure and call SPM functions to perform
% computations on the data.
% Input:
% job - harvested job data structure (see matlabbatch help)
% Output:
% out - computation results, usually a struct variable.
%________________... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_combineplanar.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_combineplanar.m | 2,797 | utf_8 | 27de6c88d0394703b4f530c798d203ac | function combineplanar = spm_cfg_eeg_combineplanar
% configuration file for combineplanar
%__________________________________________________________________________
% Copyright (C) 2009-2013 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_combineplanar.m 5377 2013-04-02 17:07:57Z vladimir ... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_merge.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_merge.m | 3,213 | utf_8 | 4ffda28c1ad73b085dd5e76bf63fe18c | function merge = spm_cfg_eeg_merge
% configuration file for merging of M/EEG files
%_______________________________________________________________________
% Copyright (C) 2008-2012 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel, Volkmar Glauche
% $Id: spm_cfg_eeg_merge.m 5516 2013-05-23 11:02:51Z vladimir $
... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_sendmail.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_sendmail.m | 5,377 | utf_8 | df08964aa8c1b4b3a7989fa23c0883ee | function sendmail = spm_cfg_sendmail
% SPM Configuration file for sendmail
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_sendmail.m 4442 2011-08-26 14:53:10Z guillaume $
% --------------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_avgfreq.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_avgfreq.m | 2,670 | utf_8 | 98fb2de07108db446413b81202434c79 | function avgfreq = spm_cfg_eeg_avgfreq
% configuration file for averaging over frequency
%__________________________________________________________________________
% Copyright (C) 2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_avgfreq.m 5652 2013-09-25 09:36:22Z volkmar $
%---------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_artefact.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_artefact.m | 5,386 | utf_8 | 9ee37086054fcefda047d7eb9c6526e8 | function artefact = spm_cfg_eeg_artefact
% Configuration file for M/EEG artefact detection
%__________________________________________________________________________
% Copyright (C) 2008-2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_artefact.m 5592 2013-07-24 16:25:55Z vladimir $
... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_norm.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_norm.m | 26,851 | utf_8 | f616ad3798f205b3ef5c03a9a4051632 | function normalise = spm_cfg_norm
% SPM Configuration file for Spatial Normalisation
%__________________________________________________________________________
% Copyright (C) 2012-2014 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_cfg_norm.m 6148 2014-09-03 15:49:04Z guillaume $
%-------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_copy.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_copy.m | 2,016 | utf_8 | 4728758687034537360dafd00dfb3616 | function copy = spm_cfg_eeg_copy
% configuration file for copying
%__________________________________________________________________________
% Copyright (C) 2009-2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_copy.m 5377 2013-04-02 17:07:57Z vladimir $
%-----------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_exp_frames.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_exp_frames.m | 2,337 | utf_8 | a5a4f040534304021b1fdbd173cb46a0 | function exp_frames = spm_cfg_exp_frames
% SPM Configuration file for Expand image frames
%__________________________________________________________________________
% Copyright (C) 2009-2014 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_exp_frames.m 5956 2014-04-16 14:34:25Z guillaume $
%-------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_realign.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_realign.m | 22,603 | utf_8 | e122639d7753a4b936a8c905ec225c3a | function realign = spm_cfg_realign
% SPM Configuration file for Realign
%__________________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_realign.m 6148 2014-09-03 15:49:04Z guillaume $
%----------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_smooth.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_smooth.m | 4,202 | utf_8 | fa27a4e6beca4752739f2a2876a3a8fa | function smooth = spm_cfg_smooth
% SPM Configuration file for Smooth
%__________________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_smooth.m 6148 2014-09-03 15:49:04Z guillaume $
%--------------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_epochs.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_epochs.m | 6,230 | utf_8 | 11636a1f56ee0f443dc4b7c71ce2201c | function epoch = spm_cfg_eeg_epochs
% Configuration file for M/EEG epoching
%__________________________________________________________________________
% Copyright (C) 2008-2013 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_epochs.m 5377 2013-04-02 17:07:57Z vladimir $
D = cfg_file... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_preproc8.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_preproc8.m | 32,762 | utf_8 | 50dd1ce8cba6b3ac91c4a8765faaf02e | function preproc = spm_cfg_preproc8
% Configuration file for 'Combined Segmentation and Spatial Normalisation'
%__________________________________________________________________________
% Copyright (C) 2008-2014 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_cfg_preproc8.m 6148 2014-09-03 15:49:04... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_imcalc.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_imcalc.m | 10,914 | utf_8 | 5d59c95dab6700c7cc8c110854c3011d | function imcalc = spm_cfg_imcalc
% SPM Configuration file for ImCalc
%__________________________________________________________________________
% Copyright (C) 2008-2015 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_imcalc.m 6340 2015-02-16 12:25:56Z guillaume $
%---------------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_montage.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_montage.m | 5,251 | utf_8 | b28eecbe1531ce707b5870c44cda58a2 | function S = spm_cfg_eeg_montage
% configuration file for reading montage files
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_montage.m 5377 2013-04-02 17:07:57Z vladimir $
D = cfg_files;
D.tag = ... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_parrec.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_parrec.m | 2,958 | utf_8 | 2aff0f1f88b80ae7a0a29cd03b85e506 | function parrec = spm_cfg_parrec
% SPM Configuration file for Philips PAR/REC Import
%__________________________________________________________________________
% Copyright (C) 2015 Wellcome Trust Centre for Neuroimaging
% Guillaume Flandin
% $Id: spm_cfg_parrec.m 6315 2015-01-23 17:09:06Z guillaume $
%-------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_regressors.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_regressors.m | 3,435 | utf_8 | e8c910aa48dc95dfd02f911bb71a0914 | function eegreg = spm_cfg_eeg_regressors
% Configuration file for M/EEG time-frequency analysis
%__________________________________________________________________________
% Copyright (C) 2014 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_regressors.m 6186 2014-09-22 11:31:11Z vladimir $
... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_remove_bad_trials.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_remove_bad_trials.m | 2,260 | utf_8 | 650a4be378bab35842c9c2acd2788c3c | function remove = spm_cfg_eeg_remove_bad_trials
% configuration file for copying
%__________________________________________________________________________
% Copyright (C) 2009-2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_remove_bad_trials.m 5377 2013-04-02 17:07:57Z vladimir $
%-... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_cdir.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_cdir.m | 1,931 | utf_8 | b1ea39d134d41d865c66dcc2fe876c30 | function cdir = spm_cfg_cdir
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_cdir.m 1295 2008-04-02 14:31:24Z volkmar $
rev... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_split.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_split.m | 2,311 | utf_8 | d019fa721572520494903c2d36242ef2 | function split = spm_cfg_split
% SPM Configuration file for 4D to 3D volumes conversion
%__________________________________________________________________________
% Copyright (C) 2014 Wellcome Trust Centre for Neuroimaging
% Guillaume Flandin
% $Id: spm_cfg_split.m 5828 2014-01-03 18:38:35Z guillaume $
%-----------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_filter.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_filter.m | 2,655 | utf_8 | 661949b22b03dd6bb26fdd2200256e92 | function filter = spm_cfg_eeg_filter
% configuration file for EEG Filtering
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_filter.m 5377 2013-04-02 17:07:57Z vladimir $
rev = '$Rev: 5377 $';
D = c... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_bc.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_bc.m | 2,538 | utf_8 | 8a469ced5529d95eade6626e0d9254f9 | function bc = spm_cfg_eeg_bc
% configuration file for baseline correction
%__________________________________________________________________________
% Copyright (C) 2009-2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_bc.m 5652 2013-09-25 09:36:22Z volkmar $
%------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_invertiter.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_invertiter.m | 14,850 | utf_8 | 42f29f3566cfd72a7eec7a74aa670c1f | function invert = spm_cfg_eeg_inv_invertiter
% Configuration file for configuring imaging source inversion reconstruction
%__________________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_invertiter.m 6394 20... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_model_review.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_model_review.m | 6,532 | utf_8 | d4313b6e3af767c9aae2acbca0d8919a | function review = spm_cfg_model_review
% SPM Configuration file for Model Review
%__________________________________________________________________________
% Copyright (C) 2014 Wellcome Trust Centre for Neuroimaging
% Guillaume Flandin
% $Id: spm_cfg_model_review.m 6148 2014-09-03 15:49:04Z guillaume $
%-----------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_simulate.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_simulate.m | 9,628 | utf_8 | 0153b379ca2a43d7cd02608a8e964522 | function simulate = spm_cfg_eeg_inv_simulate
% configuration file for configuring imaging source inversion
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_simulate.m 6390 2015-... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_review.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_review.m | 774 | utf_8 | ed565ff75d4ba44e6a45ee338320fbcd | function S = spm_cfg_eeg_review
% configuration file for M/EEG reviewing tool
%__________________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_review.m 5377 2013-04-02 17:07:57Z vladimir $
rev = '$Rev: 5377 $';... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_delete.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_delete.m | 1,181 | utf_8 | 65445b2c2071e2ec80852f43ae70b104 | function delete = spm_cfg_eeg_delete
% Configuration file for deleting M/EEG datasets
%__________________________________________________________________________
% Copyright (C) 2009-2014 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_delete.m 6293 2014-12-23 18:15:57Z guillaume $
%-----... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_reduce.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_reduce.m | 3,345 | utf_8 | 3e6f22fe8fdff52a2c12789a350acc47 | function reduce = spm_cfg_eeg_reduce
% Configuration file for M/EEG time-frequency analysis
%__________________________________________________________________________
% Copyright (C) 2010-2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_reduce.m 5675 2013-10-09 14:27:17Z vladimir $
%... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_tf.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_tf.m | 5,123 | utf_8 | 7d98c10e19c405afaedaf20c42447d27 | function tf = spm_cfg_eeg_tf
% Configuration file for M/EEG time-frequency analysis
%__________________________________________________________________________
% Copyright (C) 2010-2011 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_tf.m 6029 2014-05-30 18:52:03Z vladimir $
%------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_ecat.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_ecat.m | 2,576 | utf_8 | d86369987911b5ffc374c558f1be75a3 | function ecat = spm_cfg_ecat
% SPM Configuration file for ECAT Import
%__________________________________________________________________________
% Copyright (C) 2005-2011 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_ecat.m 4466 2011-09-07 16:50:29Z guillaume $
%---------------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_firstlevel.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_firstlevel.m | 28,808 | utf_8 | 6fd8d400242f310d3310895746ce7be0 | function convmodel = spm_cfg_eeg_firstlevel
% SPM Configuration file for M/EEG convolution modelling
%_______________________________________________________________________
% Copyright (C) 2013 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_eeg_firstlevel.m 6089 2014-07-04 11:07:46Z vladimir $
rev = '$Rev: 60... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_realignunwarp.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_realignunwarp.m | 35,758 | utf_8 | fcab1ebbf4145797f691b4f1ff499eac | function realignunwarp = spm_cfg_realignunwarp
% SPM Configuration file for Realign & Unwarp
%__________________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_realignunwarp.m 6148 2014-09-03 15:49:04Z guillaume $
%-------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_downsample.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_downsample.m | 2,134 | utf_8 | d4dc26813d8dc374f6674d937e5a4b76 | function downsample = spm_cfg_eeg_downsample
% Configuration file for M/EEG downsampling
%__________________________________________________________________________
% Copyright (C) 2008-2014 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_downsample.m 5983 2014-05-14 17:09:17Z guillaume $
D... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_convert.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_convert.m | 5,987 | utf_8 | fdda78d38e033ffe8201fd0e7a0904fb | function convert = spm_cfg_eeg_convert
% configuration file for data conversion
%_______________________________________________________________________
% Copyright (C) 2008-2012 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_convert.m 6214 2014-09-29 12:30:45Z vladimir $
dataset = cfg_file... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_dcm_fmri.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_dcm_fmri.m | 6,560 | utf_8 | 8752cfcf9eac844fd851147e3ec65d3c | function fmri = spm_cfg_dcm_fmri
% SPM Configuration file for DCM for fMRI
%__________________________________________________________________________
% Copyright (C) 2008-2014 Wellcome Trust Centre for Neuroimaging
% Guillaume Flandin
% $Id: spm_cfg_dcm_fmri.m 6004 2014-05-21 14:24:14Z guillaume $
% ----------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_mix.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_mix.m | 5,178 | utf_8 | 5cff46f3343bd0bdbb1ac299ab8265b4 | function inv_mix = spm_cfg_eeg_inv_mix
% Configuration file for merging (using a new inversion) a number of
% imaging source inversion reconstructions
%__________________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Gareth Barnes
% $Id: spm_cfg_e... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_cat.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_cat.m | 2,992 | utf_8 | 12b76e91bebdf38c6ebc953ff03bc77b | function cat = spm_cfg_cat
% SPM Configuration file for 3D to 4D volumes conversion
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_cfg_cat.m 5828 2014-01-03 18:38:35Z guillaume $
%---------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_minc.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_minc.m | 3,628 | utf_8 | 36ae9c24b53b3910a829c61d27690dd2 | function minc = spm_cfg_minc
% SPM Configuration file for MINC Import
%__________________________________________________________________________
% Copyright (C) 2005-2011 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_minc.m 4466 2011-09-07 16:50:29Z guillaume $
%---------------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_tf_rescale.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_tf_rescale.m | 7,225 | utf_8 | 3cd3d8a3a979adff723c09503aa6e586 | function rescale = spm_cfg_eeg_tf_rescale
% configuration file for rescaling spectrograms
%__________________________________________________________________________
% Copyright (C) 2009-2013 Wellcome Trust Centre for Neuroimaging
% Will Penny
% $Id: spm_cfg_eeg_tf_rescale.m 5652 2013-09-25 09:36:22Z volkmar $
%-----... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_fmri_data.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_fmri_data.m | 3,004 | utf_8 | bb88b05090f20c0af3f2d846ae20caf4 | function fmri_data = spm_cfg_fmri_data
% SPM Configuration file for fMRI data specification
%__________________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_data.m 6088 2014-07-03 17:57:09Z guillaume $
%------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_priors.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_priors.m | 15,604 | utf_8 | 6ce02bc232b73c636868289623b76243 | function priors = spm_cfg_eeg_inv_priors
% Configuration file to set up priors for M/EEG source reconstruction
%__________________________________________________________________________
% Copyright (C) 2015 Wellcome Trust Centre for Neuroimaging
% Gareth Barnes
% $Id: spm_cfg_eeg_inv_priors.m 6458 2015-05-27 16:22:09... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_fmri_spec.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_fmri_spec.m | 43,597 | utf_8 | 7948fae7289a2704d9aaa7af9717a369 | function fmri_spec = spm_cfg_fmri_spec
% SPM Configuration file for fMRI model specification
%__________________________________________________________________________
% Copyright (C) 2005-2015 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_spec.m 6344 2015-02-20 11:59:25Z guillaume $
%-----------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_render.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_render.m | 9,785 | utf_8 | c7dd60acc9aa032584e0640d86fb2b78 | function rendering = spm_cfg_render
% SPM Configuration file for Render
%__________________________________________________________________________
% Copyright (C) 2013 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_render.m 6217 2014-09-29 17:54:33Z guillaume $
%===============================================... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_convert2images.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_convert2images.m | 3,831 | utf_8 | d13156c81555fe817500a7144c1e2326 | function convert2images = spm_cfg_eeg_convert2images
% configuration file for writing voxel-based images from SPM M/EEG format,
% as a time-series of 2Dimages
%_______________________________________________________________________
% Copyright (C) 2008-2012 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id:... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_patchdef.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_patchdef.m | 2,492 | utf_8 | c64922e0430915b33b08120687613d81 | function inv_patchdef = spm_cfg_eeg_inv_patchdef
% Configuration file for taking a number of previous inversion results (maybe based on different data), smoothing and creating an approximate posterior
%
%__________________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centr... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_post.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_post.m | 3,436 | utf_8 | 3f0fd4a581da22f81eafa8ecc361cf61 | function inv_post = spm_cfg_eeg_inv_post
% Configuration file for taking a number of previous inversion results (maybe based on different data), smoothing and creating an approximate posterior
%
%__________________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Ne... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_results.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_results.m | 4,069 | utf_8 | 4dc6d04381a4757d98c16abde533a32d | function results = spm_cfg_eeg_inv_results
% Configuration file for exporting results of source reconstruction
%__________________________________________________________________________
% Copyright (C) 2010-2013 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_results.m 5377 2013-04-02 ... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_contrast.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_contrast.m | 2,709 | utf_8 | f6cee0fd7b8ff5ba1322c481029995a2 | function S = spm_cfg_eeg_contrast
% configuration file for computing contrast over epochs
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_contrast.m 5377 2013-04-02 17:07:57Z vladimir $
D = cfg_file... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_spatial_confounds.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_spatial_confounds.m | 3,770 | utf_8 | 2867cbadd8d912a767fd56c17678dc07 | function sconfounds = spm_cfg_eeg_spatial_confounds
% configuration file for reading montage files
%_______________________________________________________________________
% Copyright (C) 2014 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_spatial_confounds.m 6437 2015-05-14 12:27:21Z vlad... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_dcm_meeg.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_dcm_meeg.m | 3,317 | utf_8 | ff5a43a9fb900fa5284415be060f1830 | function meeg = spm_cfg_dcm_meeg
% Invert multiple DCMs specified in GUI.
%__________________________________________________________________________
% Copyright (C) 2013-2014 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_dcm_meeg.m 6004 2014-05-21 14:24:14Z guillaume $
%--------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_deface.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_deface.m | 1,607 | utf_8 | eb1d62bd2cd73d51ffdd164af1870ea1 | function job = spm_cfg_deface
% SPM Configuration file for toolbox 'De-Face'
%__________________________________________________________________________
% Copyright (C) 2013-2014 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_cfg_deface.m 6086 2014-07-03 16:08:44Z guillaume $
%-------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_headmodelhelmet.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_headmodelhelmet.m | 15,238 | utf_8 | e89e2efea62dbffc162934e741e3a652 | function headmodelhelmet = spm_cfg_eeg_inv_headmodelhelmet
% Configuration file for specifying the head model for source reconstruction
% This is for registration using new helmet design.
%__________________________________________________________________________
% Copyright (C) 2012-2013 Wellcome Trust Centre for Neur... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_prepro.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_prepro.m | 6,733 | utf_8 | 47d15d198fe3afd36c77444189f18c76 | function prepro = spm_cfg_eeg_inv_prepro
% Configuration file for configuring imaging source inversion reconstruction
%__________________________________________________________________________
% Copyright (C) 2015 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_prepro.m 6444 2015-05-21... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_correct_sensor_data.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_correct_sensor_data.m | 1,830 | utf_8 | d103561bdfc586170b11f575f5e68797 | function correct = spm_cfg_eeg_correct_sensor_data
% configuration file for reading montage files
%_______________________________________________________________________
% Copyright (C) 2014 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_correct_sensor_data.m 6029 2014-05-30 18:52:03Z vla... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_checkreg.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_checkreg.m | 2,264 | utf_8 | dcfbe355c250904dca7680318a4afa4d | function checkreg = spm_cfg_checkreg
% SPM Configuration file for Check Reg
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_checkreg.m 4905 2012-09-06 15:34:26Z guillaume $
%-----------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_optimize.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_optimize.m | 7,063 | utf_8 | f59231d731c139e28054187635c81f0e | function optsetup = spm_cfg_eeg_inv_optimize
% Configuration file to set up optimization routines for M/EEG source
% inversion
%__________________________________________________________________________
% Copyright (C) 2015 Wellcome Trust Centre for Neuroimaging
% Gareth Barnes
% $Id: spm_cfg_eeg_inv_optimize.m 6458 2... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_md.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_md.m | 1,974 | utf_8 | 7596c832b50c0ecadcf8ef562069a262 | function md = spm_cfg_md
% SPM Configuration file for making directory function
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_md.m 1827 2008-06-16 13:54:37Z guillaume $
% ---------------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_avgtime.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_avgtime.m | 2,635 | utf_8 | 995fc2be9eda6b88862d12e876700680 | function avgtime = spm_cfg_eeg_avgtime
% configuration file for averaging over time
%__________________________________________________________________________
% Copyright (C) 2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_avgtime.m 5652 2013-09-25 09:36:22Z volkmar $
%--------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_prepare.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_prepare.m | 13,071 | utf_8 | 01a052028762cf89e9d33c2d5cdf9638 | function prepare = spm_cfg_eeg_prepare
% configuration file for the prepare tool
%_______________________________________________________________________
% Copyright (C) 2012 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_prepare.m 6320 2015-01-27 16:18:40Z vladimir $
rev = '$Rev: 6320 $'... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_results.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_results.m | 11,148 | utf_8 | 1de78c2076bf0fa8fa787da5a7f5fd93 | function results = spm_cfg_results
% SPM Configuration file for Results Report
%__________________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_results.m 6147 2014-09-02 19:03:42Z guillaume $
%---------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_disp.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_disp.m | 4,719 | utf_8 | 9f6f5adf2e1375a3f6df5d5daeb54bae | function disp = spm_cfg_disp
% SPM Configuration file for Image Display
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_disp.m 4205 2011-02-21 15:39:08Z guillaume $
%-------------------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_dcm_bms.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_dcm_bms.m | 16,348 | utf_8 | cfe5dd1d73eb3b4dacfd6ab9ab611194 | function bms = spm_cfg_dcm_bms
% Configuration file for Bayesian Model Selection (DCM)
%__________________________________________________________________________
% Copyright (C) 2008-2014 Wellcome Trust Centre for Neuroimaging
% Maria Joao Rosa
% $Id: spm_cfg_dcm_bms.m 6005 2014-05-21 16:46:26Z guillaume $
%--------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_st.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_st.m | 9,852 | utf_8 | ca14875308d4aadab46172d81120a6c9 | function st = spm_cfg_st
% SPM Configuration file for Slice Timing Correction
%__________________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_st.m 6148 2014-09-03 15:49:04Z guillaume $
%----------------------------------------... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_invert.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_invert.m | 7,804 | utf_8 | 7fa000f66b21b913dbafa1c6990b6f48 | function invert = spm_cfg_eeg_inv_invert
% configuration file for configuring imaging source inversion
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_invert.m 5568 2013-07-01 ... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_eeg_inv_extract.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_eeg_inv_extract.m | 3,293 | utf_8 | a4023fbc3faa7962ca92467102a9bc0a | function extract = spm_cfg_eeg_inv_extract
% configuration file for extracting source data from imaging source
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2011 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_extract.m 5377 20... |
github | mccahill/docker-novnc-fmri-master | spm_cfg_fmri_est.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_cfg_fmri_est.m | 26,740 | utf_8 | 059654067bc4c80bb72b728fa46e49a4 | function fmri_est = spm_cfg_fmri_est
% SPM Configuration file for Model Estimation
%__________________________________________________________________________
% Copyright (C) 2005-2013 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_est.m 5959 2014-04-16 17:14:33Z will $
%=================================... |
github | mccahill/docker-novnc-fmri-master | spm_run_norm.m | .m | docker-novnc-fmri-master/mri/spm12/config/spm_run_norm.m | 3,666 | utf_8 | 6404526e79e6df66cb195d4eedf27f48 | function out = spm_run_norm(job)
% SPM job execution function
% takes a harvested job data structure and call SPM functions to perform
% computations on the data.
% Input:
% job - harvested job data structure (see matlabbatch help)
% Output:
% out - computation results, usually a struct variable.
%_______________... |
github | mccahill/docker-novnc-fmri-master | paint.m | .m | docker-novnc-fmri-master/mri/spm12/@slover/paint.m | 10,680 | utf_8 | 05ba224755d0d79f0e4620c8a8784d5d | function obj = paint(obj, params)
% method to display slice overlay
% FORMAT paint(obj, params)
%
% Inputs
% obj - slice overlay object
% params - optional structure containing extra display parameters
% - refreshf - overrides refreshf in object
% - clf - overrides clf in... |
github | mccahill/docker-novnc-fmri-master | pr_basic_ui.m | .m | docker-novnc-fmri-master/mri/spm12/@slover/private/pr_basic_ui.m | 3,791 | utf_8 | 5f131abd12140ce35372d344f0e7a499 | function obj = pr_basic_ui(imgs, dispf)
% GUI to request parameters for slover routine
% FORMAT obj = pr_basic_ui(imgs, dispf)
%
% GUI requests choices while accepting many defaults
%
% imgs - string or cell array of image names to display
% (defaults to GUI select if no arguments passed)
% dispf - optional fl... |
github | mccahill/docker-novnc-fmri-master | delete.m | .m | docker-novnc-fmri-master/mri/spm12/@xmltree/delete.m | 1,189 | utf_8 | 9ca7b2db1b9fc84848585e118ac9d026 | function tree = delete(tree,uid)
% XMLTREE/DELETE Delete (delete a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be deleted
%__________________________________________________________________________
%
% Delete a subtree given its UID
% The tree parameter must be in ... |
github | mccahill/docker-novnc-fmri-master | save.m | .m | docker-novnc-fmri-master/mri/spm12/@xmltree/save.m | 5,114 | utf_8 | 1c7adbb3f79946f51f25d9031fcb515c | function varargout = save(tree, filename)
% XMLTREE/SAVE Save an XML tree in an XML file
% FORMAT varargout = save(tree,filename)
%
% tree - XMLTree
% filename - XML output filename
% varargout - XML string
%__________________________________________________________________________
%
% Convert an XML tree into a ... |
github | mccahill/docker-novnc-fmri-master | branch.m | .m | docker-novnc-fmri-master/mri/spm12/@xmltree/branch.m | 1,750 | utf_8 | 407ff520e9de6dc9150a5b4f44d75c90 | function subtree = branch(tree,uid)
% XMLTREE/BRANCH Branch Method
% FORMAT uid = parent(tree,uid)
%
% tree - XMLTree object
% uid - UID of the root element of the subtree
% subtree - XMLTree object (a subtree from tree)
%__________________________________________________________________________
%
% Return a su... |
github | mccahill/docker-novnc-fmri-master | flush.m | .m | docker-novnc-fmri-master/mri/spm12/@xmltree/flush.m | 1,413 | utf_8 | 64502185e2efb9de8f36e36751a39517 | function tree = flush(tree,uid)
% XMLTREE/FLUSH Flush (Clear a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be cleared
% Default is root
%__________________________________________________________________________
%
% Clear a subtree given its UID (remove... |
github | mccahill/docker-novnc-fmri-master | copy.m | .m | docker-novnc-fmri-master/mri/spm12/@xmltree/copy.m | 1,632 | utf_8 | 0b66e3420dad14d384863ed2ce6b61d5 | function tree = copy(tree,subuid,uid)
% XMLTREE/COPY Copy Method (copy a subtree in another branch)
% FORMAT tree = copy(tree,subuid,uid)
%
% tree - XMLTree object
% subuid - UID of the subtree to copy
% uid - UID of the element where the subtree must be duplicated
%______________________________________... |
github | mccahill/docker-novnc-fmri-master | convert.m | .m | docker-novnc-fmri-master/mri/spm12/@xmltree/convert.m | 5,601 | utf_8 | b907eb7a35529fbe37b99a3ce1668010 | function s = convert(tree,uid)
% XMLTREE/CONVERT Converter an XML tree in a Matlab structure
%
% tree - XMLTree object
% uid - uid of the root of the subtree, if provided.
% Default is root
% s - converted structure
%_______________________________________________________________________... |
github | mccahill/docker-novnc-fmri-master | editor.m | .m | docker-novnc-fmri-master/mri/spm12/@xmltree/editor.m | 12,421 | utf_8 | d002508dfe4783036e477d252f739d9b | function editor(tree)
%XMLTREE/EDITOR A Graphical User Interface for an XML tree
% EDITOR(TREE) opens a new Matlab figure displaying the xmltree
% object TREE.
% H = EDITOR(TREE) also returns the figure handle H.
%
% This is a beta version of <xmltree/view> successor
%
% See also XMLTREE
%_________________________... |
github | mccahill/docker-novnc-fmri-master | find.m | .m | docker-novnc-fmri-master/mri/spm12/@xmltree/find.m | 5,901 | utf_8 | b241bfaac569f137b8b809b7b66765f3 | function list = find(varargin)
% XMLTREE/FIND Find elements in a tree with specified characteristics
% FORMAT list = find(varargin)
%
% tree - XMLTree object
% xpath - string path with specific grammar (XPath)
% uid - lists of root uid's
% parameter/value - pair of pattern
% list - list of uid's of matched elements... |
github | mccahill/docker-novnc-fmri-master | xml_parser.m | .m | docker-novnc-fmri-master/mri/spm12/@xmltree/private/xml_parser.m | 16,174 | utf_8 | 501c2fdf4ab43eb66ff46c39c37c25d3 | function tree = xml_parser(xmlstr)
% XML (eXtensible Markup Language) Processor
% FORMAT tree = xml_parser(xmlstr)
%
% xmlstr - XML string to parse
% tree - tree structure corresponding to the XML file
%__________________________________________________________________________
%
% xml_parser.m is an XML 1.0 (http:/... |
github | mccahill/docker-novnc-fmri-master | save.m | .m | docker-novnc-fmri-master/mri/spm12/@gifti/save.m | 20,871 | utf_8 | 4f6552304e5771b38acbba87e0db1664 | function save(this,filename,encoding)
% Save GIfTI object in a GIfTI format file
% FORMAT save(this,filename)
% this - GIfTI object
% filename - name of GIfTI file to be created [Default: 'untitled.gii']
% encoding - optional argument to specify encoding format, among
% ASCII, Base64Binary, GZipBase6... |
github | mccahill/docker-novnc-fmri-master | gifti.m | .m | docker-novnc-fmri-master/mri/spm12/@gifti/gifti.m | 3,796 | utf_8 | 57632b95dd22b64bfd8b69284dfc61f2 | function this = gifti(varargin)
% GIfTI Geometry file format class
% Geometry format under the Neuroimaging Informatics Technology Initiative
% (NIfTI):
% http://www.nitrc.org/projects/gifti/
% http://nifti.nimh.nih.gov/
%_____________________________________________________________... |
github | mccahill/docker-novnc-fmri-master | read_gifti_file.m | .m | docker-novnc-fmri-master/mri/spm12/@gifti/private/read_gifti_file.m | 6,680 | utf_8 | 3cdf107da3776155559e99a6dac222ed | function this = read_gifti_file(filename, this)
% Low level reader of GIfTI 1.0 files
% FORMAT this = read_gifti_file(filename, this)
% filename - XML GIfTI filename
% this - structure with fields 'metaData', 'label' and 'data'.
%__________________________________________________________________________
% Cop... |
github | mccahill/docker-novnc-fmri-master | isintent.m | .m | docker-novnc-fmri-master/mri/spm12/@gifti/private/isintent.m | 2,687 | utf_8 | bd0a171cc486766095dff52dea02f74e | function [a, b] = isintent(this,intent)
% Correspondance between fieldnames and NIfTI intent codes
% FORMAT ind = isintent(this,intent)
% this - GIfTI object
% intent - fieldnames
% a - indices of found intent(s)
% b - indices of dataarrays of found intent(s)
%_______________________________________... |
github | mccahill/docker-novnc-fmri-master | spm_read_hdr.m | .m | docker-novnc-fmri-master/mri/spm12/compat/spm_read_hdr.m | 5,627 | utf_8 | 5d1e373252668ce8b8030c0b84692f5f | function [hdr,otherendian] = spm_read_hdr(fname)
% Read (SPM customised) Analyze header
% FORMAT [hdr,otherendian] = spm_read_hdr(fname)
% fname - .hdr filename
% hdr - structure containing Analyze header
% otherendian - byte swapping necessary flag
%_______________________________________________________... |
github | mccahill/docker-novnc-fmri-master | spm_spm_ui.m | .m | docker-novnc-fmri-master/mri/spm12/compat/spm_spm_ui.m | 98,074 | utf_8 | e8979db93d5e14d05f58d9422f52a37a | function varargout = spm_spm_ui(varargin)
% Setting up the general linear model for independent data
% FORMATs (given in Programmers Help)
%_______________________________________________________________________
%
% spm_spm_ui.m configures the design matrix (describing the general
% linear model), data specification, a... |
github | mccahill/docker-novnc-fmri-master | spm_eeval.m | .m | docker-novnc-fmri-master/mri/spm12/compat/spm_eeval.m | 8,442 | utf_8 | 44cb018896c61f8f3778f53c6349ca6e | function [p,msg] = spm_eeval(str,Type,n,m)
% Expression evaluation
% FORMAT [p,msg] = spm_eeval(str,Type,n,m)
% Str - Expression to work with
%
% Type - type of evaluation
% - 's'tring
% - 'e'valuated string
% - 'n'atural numbers
% - 'w'hole numbers
% - 'i'ntegers
% - 'r'e... |
github | mccahill/docker-novnc-fmri-master | mne_load_coil_def.m | .m | docker-novnc-fmri-master/mri/spm12/external/mne/mne_load_coil_def.m | 8,714 | utf_8 | 27f6f7c6a6d28610885a9c1be788e73a | function [CoilDef,Header] = mne_load_coil_def(fname);
%
%
% [CoilDef,Header] = mne_load_coil_def(fname);
% CoilDef = mne_load_coil_def(fname);
%
% If file name is not specified, the standard coil definition file
% $MNE_ROOT/setup/mne/coil_def.dat or $MNE_ROOT/share/mne/coil_def.dat is read
%
% The co... |
github | mccahill/docker-novnc-fmri-master | fiff_find_evoked.m | .m | docker-novnc-fmri-master/mri/spm12/external/mne/fiff_find_evoked.m | 2,846 | utf_8 | f7c5e4fd4395754f0e87d3fe6e984d62 | function [data_sets] = fiff_find_evoked(fname)
%
% [data_sets] = fiff_find_evoked(fname)
%
% Find all evoked data sets in a fif file and create a list of descriptors
%
%
% Author : Matti Hamalainen, MGH Martinos Center
% License : BSD 3-clause
%
global FIFF;
if isempty(FIFF)
FIFF = fiff_define_constants();
e... |
github | mccahill/docker-novnc-fmri-master | bemcp_example.m | .m | docker-novnc-fmri-master/mri/spm12/external/bemcp/bemcp_example.m | 21,718 | utf_8 | 04dd464b9808dd578ce14f39d7858727 |
function bemcp_example
% Simple function to test/demonstrate how the Boundary element functions are
% used in combination with Fildtrip/Forwinv routines.
%
% 1. A model is created as 3 concentric meshed spheres (using FT's
% icosahedron routines),
% 2. then random electrodes are placed on the upper part of the outer... |
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