plateform stringclasses 1
value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | yuanjun-jason/THUMOS15_Challenge_Code-master | genTmAnno.m | .m | THUMOS15_Challenge_Code-master/eval_detect/data/genTmAnno.m | 3,738 | utf_8 | a832b6e90e82cdf579be1c23d34ef871 | function genTmAnno
load('/home/yuanjun/Desktop/cvlibs/thumos15_valfeat/thumos15_validation_meta/thumos15_validation_meta.mat');
meta = thumos15_validation_videos;
anno_path = '/home/yuanjun/Desktop/cvlibs/thumos15_valfeat/TH15_Temporal_annotations_validation/annotations';
addpath(anno_path);
... |
github | yuanjun-jason/THUMOS15_Challenge_Code-master | getFV_5frame.m | .m | THUMOS15_Challenge_Code-master/thumos15_testfeat/fvPool_5Frame_PRY/getFV_5frame.m | 1,737 | utf_8 | 2fd12efa0417d9b774287d6e63e7bcb1 | function [FV, META] = getFV_5frame(TJ, frmNum, UCF_PCA, UCF_GMM)
frameEndInd = TJ(:, 1);
feat = appPCA(TJ, UCF_PCA);
clear TJ;
FV = cell(0);
META = cell(0);
frmInd = 6;
ind = 1;
trjCnt = 0;
while 1
if frmInd > ( frmNum - 9 )
break;
end
% frame from 6 to end-9, ending frame from 6+7 to end-2
... |
github | yuanjun-jason/THUMOS15_Challenge_Code-master | getPry_gpu.m | .m | THUMOS15_Challenge_Code-master/thumos15_testfeat/fvPool_5Frame_PRY/getPry_gpu.m | 2,561 | utf_8 | 1567471b26e5969a666ba830d8e44f4e | function [SC, N, Frm] = getPry4(fv_unorm, meta, W, sqrtPRI)
SC = cell(9, 1);
N = cell(9, 1);
Nm = size(fv_unorm, 2)-1;
TMP_FV = zeros([size(fv_unorm, 1), Nm], 'single', 'gpuArray');
PAD_N = padarray(meta(2,:), [0, 8]);
TMP_N = zeros(1, Nm, 'single');
for p = 1:9
if p == 1
TMP_FV= fv_unorm(:, ... |
github | yuanjun-jason/THUMOS15_Challenge_Code-master | getPry.m | .m | THUMOS15_Challenge_Code-master/thumos15_testfeat/fvPool_5Frame_PRY/getPry.m | 2,591 | utf_8 | c9afd9eae63c3adc7795a8a3007f8e38 | function [SC, N, Frm] = getPry(fv_unorm, meta, W, sqrtPRI)
SC = cell(9, 1);
N = cell(9, 1);
Nm = size(fv_unorm, 2)-1;
PAD_FV = padarray(fv_unorm, [0, 8]);
TMP_FV = zeros([size(fv_unorm, 1), Nm], 'single');
PAD_N = padarray(meta(2,:), [0, 8]);
TMP_N = zeros(1, Nm, 'single');
for p = 1:9
for j = 1: Nm
... |
github | MariusKlug/mobilab-master | eegEpoch.m | .m | mobilab-master/eegEpoch.m | 25,019 | utf_8 | 065ebc68b06c5afdb7ca61ebd668a04a | % Creates an object from the class eegEpoch
% The class eegEpoch can handle epoched data either in channel or component space.
% The class defines methods for ERP computation, single trial wavelet denoising based on Quian and Garcia (2002),
% and time-frequency analysis. See examples below.
%
% Author: Alejandro Ojeda... |
github | MariusKlug/mobilab-master | videoMaker.m | .m | mobilab-master/videoMaker.m | 2,233 | utf_8 | ae9c0a1e041d0fc1c8ed4bc8bd4fe104 | classdef videoMaker < handle
properties
nowCursor
hTimer
hGraphics
period
hStreamObj
videoFilename
tmin
tmax
paintCallback
end
properties(Hidden = true)
vObj
progressBar
statusBar
end
methods
fun... |
github | MariusKlug/mobilab-master | mobilabApplication.m | .m | mobilab-master/mobilabApplication.m | 42,559 | utf_8 | 45aa12a41670d708aec74f0331e5d3e9 | % The role of the class mobilabApplication is to control the graphical
% user interface (gui). The gui is created on execution time by embedding
% a Java JTree component in the main window. This interactive tree is created
% to display parent-child relationships between the objects provided by the
% dataSource. Then,... |
github | MariusKlug/mobilab-master | inverseSolutionLoreta.m | .m | mobilab-master/inverseSolutionLoreta.m | 3,141 | utf_8 | 4bf9324472dfe985b2d4cb7650cc5b37 | function [J,lambdaOpt] = inverseSolutionLoreta(Y,K,L,nlambda,plotGCV,threshold)
%[J,lambdaOpt] = inverseSolutionLoreta(Y,K,L,nlambda,plotGCV,threshold)
%
% Estimates the Primary Current Density of a given topographic map using
% a laplacian penalty. The estimated parametric map representing the PCD
% is formaly equiva... |
github | MariusKlug/mobilab-master | dataSourceMoBI.m | .m | mobilab-master/dataSourceMoBI.m | 12,813 | utf_8 | b40b8cdca4cad82f61e5547105d0464a | % Definition of the class dataSourceMoBI. This class reads into MoBILAB the
% content of a folder containing MoBILAB files.
%
% Author: Alejandro Ojeda, SCCN, INC, UCSD, 05-Apr-2011
%%
classdef dataSourceMoBI < dataSource
methods
%%
function obj = dataSourceMoBI(mobiDataDirectory)
% Cre... |
github | MariusKlug/mobilab-master | mocapEEGdataset.m | .m | mobilab-master/mocapEEGdataset.m | 15,973 | utf_8 | 9f1b40497fe07e9e3aacc2407814ddc0 | classdef mocapEEGdataset < handle
properties
mocapTrials
eegTrials
boundary
ersp
itc
frequency
end
properties(Dependent)
time
condition
end
methods
function obj = mocapEEGdataset(mocapObj,mocapChannels,eegObj,eegChannels,latenc... |
github | MariusKlug/mobilab-master | variationalDynLoreta.m | .m | mobilab-master/variationalDynLoreta.m | 4,368 | utf_8 | 1d43cd2709b776bfa3f7d1a6b6745466 | function [J,alpha,beta,T,lambda2,FVU,aic] = variationalDynLoreta(Ut,Y,s2,iLV,L,alpha,beta,options)
%[J,alpha,beta,T] = variationalDynLoreta(Ut,Y,s2,iLV,L,alpha,beta,options)
%
% Computes the posterior distribution of the parameters J given some data V.
% The program solves levels of inference: 1) optimization of para... |
github | MariusKlug/mobilab-master | inverseSolutionLoreta3D.m | .m | mobilab-master/inverseSolutionLoreta3D.m | 3,921 | utf_8 | 79f7dfe7a8e1e3ae9d586f80875d6fad | function [J,lambdaOpt,sig] = inverseSolutionLoreta3D(Y,K,L,nlambda,plotGCV,threshold)
%[J,lambdaOpt] = inverseSolutionLoreta(Y,K,L,nlambda,plotGCV,threshold)
%
% Estimates the Primary Current Density of a given topographic map using
% a laplacian penalty. The estimated parametric map representing the PCD
% is formaly ... |
github | MariusKlug/mobilab-master | eeg.m | .m | mobilab-master/eeg.m | 34,013 | utf_8 | 2f666ef0c852ea1262a992d57d1aa5c1 | % Definition of the class eeg. This class defines analysis methods
% exclusively for EEG data.
%
% For more details visit: https://code.google.com/p/mobilab/
%
% Author: Alejandro Ojeda, SCCN, INC, UCSD, Apr-2011
classdef eeg < dataStream
properties
isReferenced % Boolean that reflects whether an EEG d... |
github | MariusKlug/mobilab-master | dataSource.m | .m | mobilab-master/dataSource.m | 46,945 | utf_8 | cb04f03c6bdf49574c347548acfb93fc | % Definition of the class dataSource. This is an abstract class that serves
% as a base for classes that implement interfaces between data acquisition
% systems or intermediate data formats and MoBILAB toolbox.
%
% Author: Alejandro Ojeda, SCCN, INC, UCSD, Apr-2011
%%
classdef dataSource < handle
properties(SetAc... |
github | MariusKlug/mobilab-master | my_load_xdf.m | .m | mobilab-master/my_load_xdf.m | 24,158 | utf_8 | e7f25d937115faa70923b2519cb17dc6 | function [streams,fileheader] = my_load_xdf(filename,tmpFolder)
% Import an XDF file.
% [Streams,FileHeader] = load_xdf(Filename)
%
% This is a simple MATLAB importer for mult-stream XDF (Extensible Data Format) recordings. All
% information covered by the XDF 1.0 specification is imported, plus any additional meta-dat... |
github | MariusKlug/mobilab-master | invertParametricEmpiricalBayes.m | .m | mobilab-master/invertParametricEmpiricalBayes.m | 3,185 | utf_8 | 9d1677957571aab60e130db6b3951710 | function [J,models] = invertParametricEmpiricalBayes(Y,K,Q1,L,eta,Omega,obj,sourceSpace)
if nargin < 5, eta = -4;end
if nargin < 5, Omega = 16;end
[N,~,Nh] = size(Q1);
D = triu(ones(Nh));
ind = find(D);
clear D;
[indI,indJ] = ind2sub([Nh Nh],ind);
% N = 0.5*Nh^2;
Nij = length(indI);
C1 = zeros(Nh);
Pi = zeros(N,N,Nh... |
github | MariusKlug/mobilab-master | roiStream.m | .m | mobilab-master/roiStream.m | 4,789 | utf_8 | 424f3406798381e2b2d430733f1a16d0 | classdef roiStream < dataStream
properties
reducedStateSpace
end
methods
function obj = roiStream(header)
if nargin < 1, error('Not enough input arguments.');end
obj@dataStream(header);
end
%%
function reducedStateSpace = get.reducedStateSpace(... |
github | MariusKlug/mobilab-master | gcv_func.m | .m | mobilab-master/gcv_func.m | 1,081 | utf_8 | e53c07b344eed1456dd978584011ecde | function lambda2Opt = gcv_func(UtY,s,p,nlambda,plotGCV)
s2 = s.^2;
n = numel(UtY);
if isa(s,'gpuArray')
s = gather(s);
gcv = gpuArray.zeros(nlambda,1);
else
gcv = zeros(nlambda,1);
end
tol = max([n p])*eps(max(s));
lambda2 = logspace(log10(tol),log10(max(s.^2)),nlambda);
for it=1:nlambda
d = lambda2(it)... |
github | MariusKlug/mobilab-master | interpolateZeroValues.m | .m | mobilab-master/interpolateZeroValues.m | 790 | utf_8 | 9a2d3449e1220e66c19d38704a0f712f | % Given a data with undesired zero values, this function fills those zero
% values by using interpolation methods. If there are zero values in the
% beginning or end of the data, it can also extrapolate.
%
% - x is Nxp data, of p signals of length N. Data signals x(:,i) should
% have zero values at the same rows. Othe... |
github | MariusKlug/mobilab-master | binary_findClosest.m | .m | mobilab-master/binary_findClosest.m | 1,068 | utf_8 | 062186fb7d97da5e03230a0d9f6db5f7 | % vector is a monotonically increasing sorted vector.
function ind = binary_findClosest(vector,target)
%
% N = length(vector);
%
% if N <= 5
% [~,ind] = min(abs(vector - target));
% return;
% end
%
%
% ind = ceil(N/2);
% if vector(ind) > target
% ind = binary_findClosest(vector(1:ind-1),target);
% else... |
github | MariusKlug/mobilab-master | mocapEpoch.m | .m | mobilab-master/mocapEpoch.m | 19,168 | utf_8 | 40347ce72080533af4fa2bbe33a402a2 | classdef mocapEpoch < epochObject
properties
derivativeLabel
xy
end
methods
function obj = mocapEpoch(varargin)
if length(varargin) < 7, error('Not enough input arguments.');end
obj@epochObject(varargin{:});
obj.xy = varargin{7};
... |
github | MariusKlug/mobilab-master | nft_wrapper.m | .m | mobilab-master/nft_wrapper.m | 5,257 | utf_8 | 35bbc16d4758daa04b16ddf73545f114 | % nft_forward_problem_solution() - BEM forward problem solution
%
% Usage:
% >> nft_forward_problem_solution(subject_name, session_name, of)
%
% Inputs:
% subject_name - subject name as entered in NFT main window
% session_name - session name as entered in NFT main window
% of - output folder where all the outp... |
github | MariusKlug/mobilab-master | extractQueryStringsFromTextFile.m | .m | mobilab-master/extractQueryStringsFromTextFile.m | 715 | utf_8 | 98b4bf29d6b328215522047ee9449a25 | function [queryStrings, spaceLocations] = extractQueryStringsFromTextFile(PathName,FileName)
textFile = fullfile(PathName,FileName);
fid = fopen(textFile);
i = 1;
spaceLocations = [];
while 1
tline = fgetl(fid);
if strcmpi(tline,'%'), break; end;
if isempty(tline) || strcmpi(tline(1),' '),
spaceLo... |
github | MariusKlug/mobilab-master | pickfiles.m | .m | mobilab-master/pickfiles.m | 3,136 | utf_8 | bd155f20b4b2091367231fc3053d47ea | function filesf = pickfiles(directory0,filtand,filtor,filtnot)
% Usage:
% files = pickfiles(directories,filtand,filtor,filtnot)
%
% files : vector of files found
% directories: cell or vector with directories to look in
% filtand: cell or vector of simultaneously wanted strings
% filtor: cell or vector of opt... |
github | MariusKlug/mobilab-master | mocap_pipeline.m | .m | mobilab-master/mocap_pipeline.m | 26,188 | utf_8 | 48e545accc56244adbc380c6be96addb | function mocap_pipeline(dataDirectory,mobiDir)
if nargin < 2, mobiDir = fullfile(dataDirectory,'results');end
outFolder = fullfile(mobiDir,'setFiles');
if ~exist(mobiDir,'dir'), mkdir(mobiDir);end
if ~exist(outFolder,'dir'), mkdir(outFolder);end
myCodes = {'2' '3' '4' '5' '6' '7' '9' '10' '11' '12'};
endEventCodes = ... |
github | MariusKlug/mobilab-master | tfEpoch.m | .m | mobilab-master/tfEpoch.m | 17,027 | utf_8 | b951bd2379c1ea3942efff45eb1cf54a | classdef tfEpoch < epochObject
properties
frequency
base
headModelInfo
ersp
itc
end
properties(Dependent)
tfData
end
properties(Hidden,SetAccess=protected)
mmfObjTF
mmfNameTF
svdFilter = 1;
end
methods
function ... |
github | MariusKlug/mobilab-master | uigetfile2.m | .m | mobilab-master/uigetfile2.m | 2,667 | utf_8 | a344bcefaca772c110df38301343a003 | % uigetfile2() - same as uigetfile but remember folder location.
%
% Usage: >> uigetfile2(...)
%
% Inputs: Same as uigetfile
%
% Author: Arnaud Delorme & Hilit Serby, Scott Makeig, SCCN, UCSD, 2004
% Thanks to input from Bas Kortmann
%
% Copyright (C) Arnaud Delorme & Hilit Serby, Scott Makeig, SCCN, UCSD, 2004... |
github | MariusKlug/mobilab-master | findWhichScreenIsLookedAt.m | .m | mobilab-master/findWhichScreenIsLookedAt.m | 1,183 | utf_8 | f4cd131a3e9a366d2b686389d6b2a89d | %channels are x,y coordinates on each screen.. If looking at screen, values
%should be between 0 and 1 for that screen.
% in case of multiple screen lookings closer screen is selected. NaN means person doesn't look at any screens.
% size(data,2) = 2*numberOfScreens
function res = findWhichScreenIsLookedAt(data)
re... |
github | MariusKlug/mobilab-master | eegplugin_mobilab.m | .m | mobilab-master/eegplugin_mobilab.m | 1,722 | utf_8 | ee816471d08835db6e389b4bf6386b5a | % eegplugin_mobi2eeglab() - MOBILAB plugin for EEGLAB
% MOBILAB is a collection of functionalities
% for processing MoBI data, see (Makeig et al.,
% 2009).
% Usage:
% >> eegplugin_mobilab(fig, trystrs, catchstrs);
%
% Inputs:
% fig ... |
github | MariusKlug/mobilab-master | icaEEG.m | .m | mobilab-master/icaEEG.m | 28,115 | utf_8 | 53e92c5c6c568cf419f68196d7ca7d79 | % Definition of the class icaEEG. This class serves as a placeholder for ICA
% analysis of EEG data. It derives from the class eeg incorporating the
% traditional ICA fields in EEGLAB software.
%
%
% For more details visit: https://code.google.com/p/mobilab/
%
% Author: Alejandro Ojeda, SCCN, INC, UCSD, Apr-2011
cla... |
github | MariusKlug/mobilab-master | MocapPipeline.m | .m | mobilab-master/gui/MocapPipeline.m | 18,212 | utf_8 | 4b529307f03895e2691bf7f9725387ba | function varargout = MocapPipeline(varargin)
% MOCAPPIPELINE MATLAB code for MocapPipeline.fig
% MOCAPPIPELINE, by itself, creates a new MOCAPPIPELINE or raises the existing
% singleton*.
%
% H = MOCAPPIPELINE returns the handle to a new MOCAPPIPELINE or the handle to
% the existing singleton*.
%
% ... |
github | MariusKlug/mobilab-master | ImportFromSET.m | .m | mobilab-master/gui/ImportFromSET.m | 10,402 | utf_8 | 5b937b721375cfffa213c9a728ee9e52 | function varargout = ImportFromSET(varargin)
% IMPORTFROMSET MATLAB code for ImportFromSET.fig
% IMPORTFROMSET, by itself, creates a new IMPORTFROMSET or raises the existing
% singleton*.
%
% H = IMPORTFROMSET returns the handle to a new IMPORTFROMSET or the handle to
% the existing singleton*.
%
% ... |
github | MariusKlug/mobilab-master | CopyImport.m | .m | mobilab-master/gui/CopyImport.m | 6,117 | utf_8 | 793f5c24a93eaa797deaf75b8b59d089 | function varargout = CopyImport(varargin)
% COPYIMPORT MATLAB code for CopyImport.fig
% COPYIMPORT, by itself, creates a new COPYIMPORT or raises the existing
% singleton*.
%
% H = COPYIMPORT returns the handle to a new COPYIMPORT or the handle to
% the existing singleton*.
%
% COPYIMPORT('CALL... |
github | MariusKlug/mobilab-master | CreateEvent.m | .m | mobilab-master/gui/CreateEvent.m | 7,538 | utf_8 | 5f8ba271b4fa1882f539f2bfeef7ef46 | function varargout = CreateEvent(varargin)
% CREATEEVENT MATLAB code for CreateEvent.fig
% CREATEEVENT, by itself, creates a new CREATEEVENT or raises the existing
% singleton*.
%
% H = CREATEEVENT returns the handle to a new CREATEEVENT or the handle to
% the existing singleton*.
%
% CREATEEVE... |
github | MariusKlug/mobilab-master | ImportFromDatariverFolder.m | .m | mobilab-master/gui/ImportFromDatariverFolder.m | 10,485 | utf_8 | 5dadd2c68ed90b62cd20c054a2e5e1b9 | function varargout = ImportFromDatariverFolder(varargin)
% IMPORTFROMDATARIVERFOLDER MATLAB code for ImportFromDatariverFolder.fig
% IMPORTFROMDATARIVERFOLDER, by itself, creates a new IMPORTFROMDATARIVERFOLDER or raises the existing
% singleton*.
%
% H = IMPORTFROMDATARIVERFOLDER returns the handle to a... |
github | MariusKlug/mobilab-master | ImportFile2EEGLAB.m | .m | mobilab-master/gui/ImportFile2EEGLAB.m | 9,484 | utf_8 | a15f2a109e5bce1fd52783e58eb48dc2 | function varargout = ImportFile2EEGLAB(varargin)
% IMPORTFILE2EEGLAB MATLAB code for ImportFile2EEGLAB.fig
% IMPORTFILE2EEGLAB, by itself, creates a new IMPORTFILE2EEGLAB or raises the existing
% singleton*.
%
% H = IMPORTFILE2EEGLAB returns the handle to a new IMPORTFILE2EEGLAB or the handle to
% t... |
github | MariusKlug/mobilab-master | SegmentsEditor.m | .m | mobilab-master/gui/SegmentsEditor.m | 19,572 | utf_8 | 5dd000cbae655f04018c0afe4af9a143 | function varargout = SegmentsEditor(varargin)
% SEGMENTSEDITOR MATLAB code for SegmentsEditor.fig
% SEGMENTSEDITOR, by itself, creates a new SEGMENTSEDITOR or raises the existing
% singleton*.
%
% H = SEGMENTSEDITOR returns the handle to a new SEGMENTSEDITOR or the handle to
% the existing singleton... |
github | MariusKlug/mobilab-master | ImportFolder2EEGLAB.m | .m | mobilab-master/gui/ImportFolder2EEGLAB.m | 9,798 | utf_8 | ffbae5b533dcd0ddd4114d333b9600ad | function varargout = ImportFolder2EEGLAB(varargin)
% IMPORTFOLDER2EEGLAB MATLAB code for ImportFolder2EEGLAB.fig
% IMPORTFOLDER2EEGLAB, by itself, creates a new IMPORTFOLDER2EEGLAB or raises the existing
% singleton*.
%
% H = IMPORTFOLDER2EEGLAB returns the handle to a new IMPORTFOLDER2EEGLAB or the hand... |
github | MariusKlug/mobilab-master | ImportFromXDF.m | .m | mobilab-master/gui/ImportFromXDF.m | 10,426 | utf_8 | 09c77bf9453257e3abf22153c4051a16 | function varargout = ImportFromXDF(varargin)
% IMPORTFROMXDF MATLAB code for ImportFromXDF.fig
% IMPORTFROMXDF, by itself, creates a new IMPORTFROMXDF or raises the existing
% singleton*.
%
% H = IMPORTFROMXDF returns the handle to a new IMPORTFROMXDF or the handle to
% the existing singleton*.
%
% ... |
github | MariusKlug/mobilab-master | KinematicsPlotTool.m | .m | mobilab-master/gui/KinematicsPlotTool.m | 10,301 | utf_8 | e670e4795c9d98f8575c9799578df72c | function varargout = KinematicsPlotTool(varargin)
% KINEMATICSPLOTTOOL MATLAB code for KinematicsPlotTool.fig
% KINEMATICSPLOTTOOL, by itself, creates a new KINEMATICSPLOTTOOL or raises the existing
% singleton*.
%
% H = KINEMATICSPLOTTOOL returns the handle to a new KINEMATICSPLOTTOOL or the handle to
%... |
github | MariusKlug/mobilab-master | ReadDatariverFolder.m | .m | mobilab-master/gui/ReadDatariverFolder.m | 9,610 | utf_8 | 3eb56464924ea4ede78f5b09870a7fdf | function varargout = ReadDatariverFolder(varargin)
% READDATARIVERFOLDER MATLAB code for ReadDatariverFolder.fig
% READDATARIVERFOLDER, by itself, creates a new READDATARIVERFOLDER or raises the existing
% singleton*.
%
% H = READDATARIVERFOLDER returns the handle to a new READDATARIVERFOLDER or the hand... |
github | MariusKlug/mobilab-master | ReadDatariverDRF.m | .m | mobilab-master/gui/ReadDatariverDRF.m | 10,320 | utf_8 | f53d43f717d8f44ea7cbcb6f26599cca | function varargout = ReadDatariverDRF(varargin)
% READDATARIVERDRF MATLAB code for ReadDatariverDRF.fig
% READDATARIVERDRF, by itself, creates a new READDATARIVERDRF or raises the existing
% singleton*.
%
% H = READDATARIVERDRF returns the handle to a new READDATARIVERDRF or the handle to
% the exis... |
github | MariusKlug/mobilab-master | ActionPlaneCalc.m | .m | mobilab-master/gui/ActionPlaneCalc.m | 14,495 | utf_8 | ee6176e8ef2134fbced9d8ee0769df56 | function varargout = ActionPlaneCalc(varargin)
% ACTIONPLANECALC MATLAB code for ActionPlaneCalc.fig
% ACTIONPLANECALC, by itself, creates a new ACTIONPLANECALC or raises the existing
% singleton*.
%
% H = ACTIONPLANECALC returns the handle to a new ACTIONPLANECALC or the handle to
% the existing si... |
github | MariusKlug/mobilab-master | mobilabLicense.m | .m | mobilab-master/gui/mobilabLicense.m | 3,503 | utf_8 | eeb7a719aae92eb8986b1b857c42c968 | function varargout = mobilabLicense(varargin)
% MOBILABLICENSE MATLAB code for mobilabLicense.fig
% MOBILABLICENSE, by itself, creates a new MOBILABLICENSE or raises the existing
% singleton*.
%
% H = MOBILABLICENSE returns the handle to a new MOBILABLICENSE or the handle to
% the existing singleton... |
github | MariusKlug/mobilab-master | ImportFolder.m | .m | mobilab-master/gui/ImportFolder.m | 10,077 | utf_8 | f420062ac17a1261eea4f6c9eecee60c | function varargout = ImportFolder(varargin)
% IMPORTFOLDER MATLAB code for ImportFolder.fig
% IMPORTFOLDER, by itself, creates a new IMPORTFOLDER or raises the existing
% singleton*.
%
% H = IMPORTFOLDER returns the handle to a new IMPORTFOLDER or the handle to
% the existing singleton*.
%
% IM... |
github | MariusKlug/mobilab-master | ImportFromDatariverBDF.m | .m | mobilab-master/gui/ImportFromDatariverBDF.m | 10,322 | utf_8 | 64ee9e14c086ba3e83b1f1ca829be534 | function varargout = ImportFromDatariverBDF(varargin)
% IMPORTFROMDATARIVERBDF MATLAB code for ImportFromDatariverBDF.fig
% IMPORTFROMDATARIVERBDF, by itself, creates a new IMPORTFROMDATARIVERBDF or raises the existing
% singleton*.
%
% H = IMPORTFROMDATARIVERBDF returns the handle to a new IMPORTFROMDAT... |
github | MariusKlug/mobilab-master | sendReport.m | .m | mobilab-master/gui/sendReport.m | 8,199 | utf_8 | 264f9c17907719a033c314d76da94ba7 | function varargout = sendReport(varargin)
% SENDREPORT MATLAB code for sendReport.fig
% SENDREPORT by itself, creates a new SENDREPORT or raises the
% existing singleton*.
%
% H = SENDREPORT returns the handle to a new SENDREPORT or the handle to
% the existing singleton*.
%
% SENDREPORT('CALLB... |
github | MariusKlug/mobilab-master | editNotes.m | .m | mobilab-master/gui/editNotes.m | 5,039 | utf_8 | 408d886e3c7077bdec4c908f1163ad70 | function varargout = editNotes(varargin)
% EDITNOTES MATLAB code for editNotes.fig
% EDITNOTES, by itself, creates a new EDITNOTES or raises the existing
% singleton*.
%
% H = EDITNOTES returns the handle to a new EDITNOTES or the handle to
% the existing singleton*.
%
% EDITNOTES('CALLBACK',hO... |
github | MariusKlug/mobilab-master | ReReferencing.m | .m | mobilab-master/gui/ReReferencing.m | 16,840 | utf_8 | 61cb2423e32678aa8fac406fbf04dd20 | function varargout = ReReferencing(varargin)
% REREFERENCING MATLAB code for ReReferencing.fig
% REREFERENCING, by itself, creates a new REREFERENCING or raises the existing
% singleton*.
%
% H = REREFERENCING returns the handle add a new REREFERENCING or the handle add
% the existing singleton*.
%
... |
github | MariusKlug/mobilab-master | EventsEditor.m | .m | mobilab-master/gui/EventsEditor.m | 25,651 | utf_8 | 896c7261ad8de094cb436c49fcd1f79e | function varargout = EventsEditor(varargin)
% EVENTSEDITOR MATLAB code for EventsEditor.fig
% EVENTSEDITOR, by itself, creates a new EVENTSEDITOR or raises the existing
% singleton*.
%
% H = EVENTSEDITOR returns the handle to a new EVENTSEDITOR or the handle to
% the existing singleton*.
%
% EV... |
github | MariusKlug/mobilab-master | ImportFile.m | .m | mobilab-master/gui/ImportFile.m | 10,275 | utf_8 | 174ad160ea012ab3c581a328c6582a94 | function varargout = ImportFile(varargin)
% IMPORTFILE MATLAB code for ImportFile.fig
% IMPORTFILE, by itself, creates a new IMPORTFILE or raises the existing
% singleton*.
%
% H = IMPORTFILE returns the handle to a new IMPORTFILE or the handle to
% the existing singleton*.
%
% IMPORTFILE('CALL... |
github | MariusKlug/mobilab-master | SaveAs.m | .m | mobilab-master/gui/SaveAs.m | 10,802 | utf_8 | 59573010cec6f904e2999b5d2a703c23 | function varargout = SaveAs(varargin)
% SAVEAS MATLAB code for SaveAs.fig
% SAVEAS, by itself, creates a new SAVEAS or raises the existing
% singleton*.
%
% H = SAVEAS returns the handle to a new SAVEAS or the handle to
% the existing singleton*.
%
% SAVEAS('CALLBACK',hObject,eventData,handles,... |
github | MariusKlug/mobilab-master | EventsToImport.m | .m | mobilab-master/eeglabInterface/EventsToImport.m | 6,572 | utf_8 | 98c4680b5189e90e9c8b0ba630796a04 | function varargout = EventsToImport(varargin)
% EVENTSTOIMPORT MATLAB code for EventsToImport.fig
% EVENTSTOIMPORT, by itself, creates a new EVENTSTOIMPORT or raises the existing
% singleton*.
%
% H = EVENTSTOIMPORT returns the handle add a new EVENTSTOIMPORT or the handle add
% the existing singlet... |
github | MariusKlug/mobilab-master | pop_load_xdf_mobilab.m | .m | mobilab-master/eeglabInterface/pop_load_xdf_mobilab.m | 3,638 | utf_8 | 7f97ee89c28ed0fddbdd91014b3e4417 | %% pop_load_xdf_mobilab() - Import.XDF file
%
% Based on load_xdf.m (Christian Kothe). See http://code.google.com/p/xdf/ for more information on XDF.
%
%% Usage:
% >> [ALLEEG EEG CURRENTSET,allDataStreams] = pop_load_drf(source,ALLEEG,EEG,CURRENTSET);
%
%% Inputs:
% source - .XDF or .XDFZ file name
%
%... |
github | MariusKlug/mobilab-master | EventsEditor2.m | .m | mobilab-master/eeglabInterface/EventsEditor2.m | 23,043 | utf_8 | 0351856d9ddb0a8c2d61e8e30e8ea953 | function varargout = EventsEditor2(varargin)
% EVENTSEDITOR2 MATLAB code for EventsEditor2.fig
% EVENTSEDITOR2, by itself, creates a new EVENTSEDITOR2 or raises the existing
% singleton*.
%
% H = EVENTSEDITOR2 returns the handle to a new EVENTSEDITOR2 or the handle to
% the existing singleton*.
%
% ... |
github | MariusKlug/mobilab-master | CreateEvent.m | .m | mobilab-master/eeglabInterface/CreateEvent.m | 8,874 | utf_8 | 5abc26513a1dfe5c2ba644152641eec5 | function varargout = CreateEvent(varargin)
% CREATEEVENT MATLAB code for CreateEvent.fig
% CREATEEVENT, by itself, creates a new CREATEEVENT or raises the existing
% singleton*.
%
% H = CREATEEVENT returns the handle to a new CREATEEVENT or the handle to
% the existing singleton*.
%
% CREATEEVE... |
github | MariusKlug/mobilab-master | pop_load_bdf.m | .m | mobilab-master/eeglabInterface/pop_load_bdf.m | 2,459 | utf_8 | 7a48adf12ac3491612dd0ef3ec8d3bab | %% pop_load_bdf() - Import Datariver .BDF file
%
%% Description
% Imports Datariver .DRF or MOBILAB .mat file into EEGLAB. This function uses the class dataSourceDRF and dataSourceMAT respectively
% to load MoBI data. The program inserts in ALLEEG all the EEG data extracted from the file source and returns in EEG the
... |
github | MariusKlug/mobilab-master | pop_load_file_mobilab.m | .m | mobilab-master/eeglabInterface/pop_load_file_mobilab.m | 5,198 | utf_8 | 9b58ba98384217296304a7d42a5d278b | %% pop_load_file_mobilab() - Imports multi-stream files into EEGLAB/MoBILAB
%
%% Description
% Imports any any supported file format, so far .xdf (Lab Stream Layer) and .drf (DataRiver), into EEGLAB/MoBILAB. This function
% uses the class dataSourceDRF. The program inserts in ALLEEG all the EEG data extracted from the ... |
github | MariusKlug/mobilab-master | EventEditorSettings.m | .m | mobilab-master/eeglabInterface/EventEditorSettings.m | 7,208 | utf_8 | ccaf9fe001dbd7ab4b15e0531aa4aca4 | function varargout = EventEditorSettings(varargin)
% EVENTEDITORSETTINGS MATLAB code for EventEditorSettings.fig
% EVENTEDITORSETTINGS, by itself, creates a new EVENTEDITORSETTINGS or raises the existing
% singleton*.
%
% H = EVENTEDITORSETTINGS returns the handle to a new EVENTEDITORSETTINGS or the hand... |
github | MariusKlug/mobilab-master | ImportFromXDF2.m | .m | mobilab-master/eeglabInterface/ImportFromXDF2.m | 9,868 | utf_8 | 4d97cee9727b8fa42f837ff211dfcd60 | function varargout = ImportFromXDF2(varargin)
% IMPORTFROMXDF2 MATLAB code for ImportFromXDF2.fig
% IMPORTFROMXDF2, by itself, creates a new IMPORTFROMXDF2 or raises the existing
% singleton*.
%
% H = IMPORTFROMXDF2 returns the handle to a new IMPORTFROMXDF2 or the handle to
% the existing singleton... |
github | MariusKlug/mobilab-master | pop_load_MoBI.m | .m | mobilab-master/eeglabInterface/pop_load_MoBI.m | 2,889 | utf_8 | e0cc07a5685d8c7d645c75d997a2bda5 | %% pop_load_MoBIf() - Import from MoBILAB
%
% Author: Alejandro Ojeda, Nima Bigdely Shamlo, and Christian Kothe, SCCN, INC, UCSD, July 2006
%
% See also: eeglab()
%%
function allDataStreams = pop_load_MoBI(mobiDataDirectory)
if nargin < 1, mobiDataDirectory = [];end
flag = evalin('base','exist(''allDataStreams'',''va... |
github | MariusKlug/mobilab-master | pop_load_drf.m | .m | mobilab-master/eeglabInterface/pop_load_drf.m | 3,755 | utf_8 | eb5d7f8eaccd58e8ffb1563f33c37669 | %% pop_load_drf() - Import Datariver .DRF file
%
%% Description
% Imports Datariver .DRF or MOBILAB .mat file into EEGLAB. This function uses the class dataSourceDRF and dataSourceMAT respectively
% to load MoBI data. The program inserts in ALLEEG all the EEG data extracted from the file source and returns in EEG the
... |
github | MariusKlug/mobilab-master | EventsEditor.m | .m | mobilab-master/eeglabInterface/EventsEditor.m | 29,889 | utf_8 | 83837d8161d68bfd108d959ffff9d539 | function varargout = EventsEditor(varargin)
% EVENTSEDITOR MATLAB code for EventsEditor.fig
% EVENTSEDITOR, by itself, creates a new EVENTSEDITOR or raises the existing
% singleton*.
%
% H = EVENTSEDITOR returns the handle to a new EVENTSEDITOR or the handle to
% the existing singleton*.
%
% EV... |
github | MariusKlug/mobilab-master | pop_load_folder_mobilab.m | .m | mobilab-master/eeglabInterface/pop_load_folder_mobilab.m | 3,404 | utf_8 | 35779aaa7ad68c420da7031408b22f53 | %% pop_load_drf() - Import Datariver .DRF file
%
%% Description
% Imports Datariver .DRF or MOBILAB .mat file into EEGLAB. This function uses the class dataSourceDRF and dataSourceMAT respectively
% to load MoBI data. The program inserts in ALLEEG all the EEG data extracted from the file source and returns in EEG the
... |
github | MariusKlug/mobilab-master | ImportFromDatariver.m | .m | mobilab-master/eeglabInterface/ImportFromDatariver.m | 10,027 | utf_8 | 9b54610ea3499657391598dc8544c600 | function varargout = ImportFromDatariver(varargin)
% IMPORTFROMDATARIVER MATLAB code for ImportFromDatariver.fig
% IMPORTFROMDATARIVER, by itself, creates a new IMPORTFROMDATARIVER or raises the existing
% singleton*.
%
% H = IMPORTFROMDATARIVER returns the handle to a new IMPORTFROMDATARIVER or the hand... |
github | MariusKlug/mobilab-master | eegplotNGHandle.m | .m | mobilab-master/eeglabInterface/eegplotNGHandle.m | 33,123 | utf_8 | c01e222357f516b50f85f8e42d9a0c58 | classdef eegplotNGHandle < browserHandle
properties
gObjHandle
windowWidth
normalizeFlag
showChannelNumber
gain
numberOfChannelsToPlot
yTickLabel
colormap
colorInCell
osdColor % onscreen display color
textHandle
roiObj
... |
github | MariusKlug/mobilab-master | Events2display.m | .m | mobilab-master/eeglabInterface/Events2display.m | 6,440 | utf_8 | 5b552e5e4d248114cdfe94d92312610f | function varargout = Events2display(varargin)
% EVENTS2DISPLAY MATLAB code for Events2display.fig
% EVENTS2DISPLAY, by itself, creates a new EVENTS2DISPLAY or raises the existing
% singleton*.
%
% H = EVENTS2DISPLAY returns the handle add a new EVENTS2DISPLAY or the handle add
% the existing singlet... |
github | MariusKlug/mobilab-master | SyncEEGWithMoBILAB.m | .m | mobilab-master/eeglabInterface/SyncEEGWithMoBILAB.m | 8,564 | utf_8 | d2940202d30cf6376a034116b852a82d | function varargout = SyncEEGWithMoBILAB(varargin)
% SYNCEEGWITHMOBILAB MATLAB code for SyncEEGWithMoBILAB.fig
% SYNCEEGWITHMOBILAB, by itself, creates a new SYNCEEGWITHMOBILAB or raises the existing
% singleton*.
%
% H = SYNCEEGWITHMOBILAB returns the handle to a new SYNCEEGWITHMOBILAB or the handle to
%... |
github | MariusKlug/mobilab-master | savejson.m | .m | mobilab-master/dependency/jsonlab/savejson.m | 13,894 | utf_8 | e7cec5b8f38043b1b4c02348911ff07b | function json=savejson(rootname,obj,varargin)
%
% json=savejson(rootname,obj,filename)
% or
% json=savejson(rootname,obj,opt)
% json=savejson(rootname,obj,'param1',value1,'param2',value2,...)
%
% convert a MATLAB object (cell, struct or array) into a JSON (JavaScript
% Object Notation) string
%
% author: Qianqian Fa... |
github | MariusKlug/mobilab-master | loadjson.m | .m | mobilab-master/dependency/jsonlab/loadjson.m | 15,312 | ibm852 | 54a5e8d8b39c77904a572c96f3df77a5 | function data = loadjson(fname,varargin)
%
% data=loadjson(fname,opt)
% or
% data=loadjson(fname,'param1',value1,'param2',value2,...)
%
% parse a JSON (JavaScript Object Notation) file or string
%
% authors:Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% date: 2011/09/09
% Nedialko Krouchev: http:... |
github | MariusKlug/mobilab-master | clean_channels.m | .m | mobilab-master/dependency/clean_rawdata/clean_channels.m | 9,467 | utf_8 | 97311eec26b1a24bc799715b3f3ed7c3 | function signal = clean_channels(signal,min_corr,ignored_quantile,window_len,max_broken_time,linenoise_aware)
% Remove channels with abnormal data from a continuous data set.
% Signal = clean_channels(Signal,MinCorrelation,IgnoredQuantile,WindowLength,MaxBrokenTime,LineNoiseAware)
%
% This is an automated artifact reje... |
github | MariusKlug/mobilab-master | clean_drifts.m | .m | mobilab-master/dependency/clean_rawdata/clean_drifts.m | 5,314 | utf_8 | 5ff977c9259d1df503679018565f0e6a | function signal = clean_drifts(signal,transition)
% Removes drifts from the data using a forward-backward high-pass filter.
% Signal = clean_drifts(Signal,Transition)
%
% This removes drifts from the data using a forward-backward (non-causal) filter.
% NOTE: If you are doing directed information flow analysis, do ... |
github | MariusKlug/mobilab-master | asr_process.m | .m | mobilab-master/dependency/clean_rawdata/asr_process.m | 8,087 | utf_8 | cc9a1c4f9c56b6be58274f25f8b9850f | function [outdata,outstate] = asr_process(data,srate,state,windowlen,lookahead,stepsize,maxdims,maxmem,usegpu)
% Remove high-amplitude artifacts from a chunk of EEG data.
% [Data,State] = asr_process(Data,SamplingRate,State,WindowLength,LookAhead,StepSize,MaxDimensions,MaxMemory)
%
% In:
% Data : Chunk of data t... |
github | MariusKlug/mobilab-master | clean_rawdata.m | .m | mobilab-master/dependency/clean_rawdata/clean_rawdata.m | 4,183 | utf_8 | 5defcdfd773ad5256471a5e269dde966 | % clean_rawdata(): a wrapper to call Christian's clean_artifacts.
% Usage:
% >> EEG = clean_rawdata(EEG, arg_flatline, arg_highpass, arg_channel, arg_burst, arg_window)
%
% This function removes drifts, bad channels, generic short-time bursts and bad segments from the data.
% Tip: Any parameter can also be passed in... |
github | MariusKlug/mobilab-master | pop_clean_rawdata.m | .m | mobilab-master/dependency/clean_rawdata/pop_clean_rawdata.m | 5,106 | utf_8 | 74b141e7483955873dcc2d0a2ac55517 | % pop_clean_rawdata(): Launch GUI to collect user inputs for
% clean_artifacts().
% Usage:
% >> EEG = pop_clean_rawdata();
%
% This function removes drifts, bad channels, generic short-time bursts and bad segments from the data.
% Tip: Any parameter can also be passed in as [] to use the respect... |
github | MariusKlug/mobilab-master | clean_artifacts.m | .m | mobilab-master/dependency/clean_rawdata/clean_artifacts.m | 9,426 | utf_8 | 0d96f8c534c19c74c0fb6ff0a1c05518 | function [EEG,HP,BUR] = clean_artifacts(EEG,varargin)
% Clean various types of artifacts from the EEG.
% [EEG,HP,BUR] = clean_artifacts(EEG, Options...)
%
% This function removes drifts, bad channels, generic short-time bursts and bad segments from the data.
% Tip: Any parameter can also be passed in as [] to use ... |
github | MariusKlug/mobilab-master | vis_artifacts.m | .m | mobilab-master/dependency/clean_rawdata/vis_artifacts.m | 22,323 | utf_8 | 7ced8ed802386c3097c0273b4e0f816d | % vis_artifacts(NewEEG,OldEEG,Options...)
% Display the artifact rejections done by any of the artifact cleaning functions.
%
% Keyboard Shortcuts:
% [n] : display just the new time series
% [o] : display just the old time series
% [b] : display both time series super-imposed
% [d] : display the difference betw... |
github | MariusKlug/mobilab-master | eegplugin_clean_rawdata.m | .m | mobilab-master/dependency/clean_rawdata/eegplugin_clean_rawdata.m | 1,334 | utf_8 | d0283256f81342d0b35f2e401a730ad1 | % eegplugin_clean_rawdata() - a wrapper to plug-in Christian's clean_artifact() into EEGLAB. .
%
% Usage:
% >> eegplugin_firstPassOutlierTrimmer(fig,try_strings,catch_strings);
%
% see also: clean_artifacts
% Author: Makoto Miyakoshi and Christian Kothe, SCCN,INC,UCSD 2013
% History:
% 06/26/2013 ver 1.0 by Makot... |
github | MariusKlug/mobilab-master | cudaica.m | .m | mobilab-master/dependency/cudaica/cudaica.m | 13,398 | utf_8 | 6c9148a9fb8eba805ff8a94d19734ef3 | % cudaica() - Run stand-alone binary version of runica() from the
% Matlab command line. Saves time and memory relative
% to runica(). If stored in a float file, data are not
% read into Matlab, and so may be larger than Matlab
% can handle owing to memory limitations.
% Us... |
github | MariusKlug/mobilab-master | manually_warp_images.m | .m | mobilab-master/dependency/nonrigid_version23/manually_warp_images.m | 20,885 | utf_8 | 99d389af428709425fe2acd4bd76ed36 | function varargout = manually_warp_images(varargin)
% MANUALLY_WARP_IMAGES, is a GUI which shows the controlpoint grid used
% during registration of two images, allowing the user to drag control
% points to get a better initial alignement before pressing the start
% registration button.
%
% Example,
% Istatic=im2do... |
github | MariusKlug/mobilab-master | point_registration.m | .m | mobilab-master/dependency/nonrigid_version23/point_registration.m | 7,800 | utf_8 | 33aeda7994a999419734db78ba94b0d9 | function [O_trans,Spacing,Xreg]=point_registration(sizeI,Xmoving,Xstatic,Options)
% This function creates a 2D or 3D b-spline grid, which transform space to
% fit a set of points Xmoving to set of corresponding points in Xstatic.
% Usefull for:
% - For image-registration based on corresponding landmarks like in
... |
github | MariusKlug/mobilab-master | image_registration.m | .m | mobilab-master/dependency/nonrigid_version23/image_registration.m | 28,458 | utf_8 | 56d6efbb876ada7e7ebcbf4a0dfdaf31 | function [Ireg,O_trans,Spacing,M,B,F] = image_registration(Imoving,Istatic,Options)
% This function image_registration is the most easy way to register two
% 2D or 3D images both affine and nonrigidly.
%
% Features:
% - It can be used with images from different type of scans or modalities.
% - It uses both a rigi... |
github | MariusKlug/mobilab-master | penalties_smoothness.m | .m | mobilab-master/dependency/nonrigid_version23/functions/penalties_smoothness.m | 5,765 | utf_8 | 45d5ede2a475bd92542a201ce064f98a | function [O_penalty, O_grad]=penalties_smoothness(O,sizeI,Scaling)
% This function calculates the 2D or 3D equivalent of the 2D
% bending energy of thin sheet of metal, for a 2D or 3D transformation
% grid of cubic spline control points.
%
% [O_penalty, O_derivative]=penalties_smoothness(O,sizeI,Scaling);
%
%... |
github | MariusKlug/mobilab-master | showcs3.m | .m | mobilab-master/dependency/nonrigid_version23/functions/showcs3.m | 7,820 | utf_8 | 95b0985136cf1adb4d2095e02e25ad9c | function varargout = showcs3(varargin)
% Function showcs3(V) will display x,y,z cross sections of the volume V
% The planes can be rotated with the mouse, and slice number with the
% sliders.
%
% Example,
% load mri; D=squeeze(D);
% scales=[1 1 0.5];
% showcs3(D,scales);
%
% Function is written by D.Kroon Univers... |
github | MariusKlug/mobilab-master | image_difference.m | .m | mobilab-master/dependency/nonrigid_version23/functions/image_difference.m | 13,138 | utf_8 | 1069c7d8aced91b8847e651cb08826ab | function [t,I]=image_difference(V,U,type,Mask,MaskNum)
% This function gives a registration error and error image I between the two
% images or volumes.
%
% [t,I]=image_difference(I1,I2,type,Mask)
%
% inputs,
% I1: Input image 1
% I2: Input image 2
% type: Type of similarity / error measure
% (optional)... |
github | MariusKlug/mobilab-master | refine_grid.m | .m | mobilab-master/dependency/nonrigid_version23/functions/refine_grid.m | 4,816 | utf_8 | 4c42d558f3b34ebdbe6af2748e541767 | function [O_new,Spacing]=refine_grid(O_trans,Spacing,sizeI)
% Refine image transformation grid of 1D b-splines with use of spliting matrix
%
% Msplit=(1/8)*[4 4 0 0;
% 1 6 1 0;
% 0 4 4 0;
% 0 1 6 1;
% 0 0 4 4];
%
% [O_new,Spacing] = r... |
github | MariusKlug/mobilab-master | bspline_trans_points_double.m | .m | mobilab-master/dependency/nonrigid_version23/functions_nonrigid/bspline_trans_points_double.m | 7,517 | utf_8 | e4ba049307f53567d288b81c257e8ec0 | function [Tlocal,Dlocal]=bspline_trans_points_double(O_trans,Spacing,X,check)
% If Spacing and points are not an integer, we can not use fast look up tables,
% but have to calculate the bspline coefficients for every point
if(nargin<4)
check = any(mod(Spacing,1)>0)|any(mod(X(:),1)>0);
end
switch size(X,2)
... |
github | MariusKlug/mobilab-master | bspline_registration_gradient.m | .m | mobilab-master/dependency/nonrigid_version23/functions_nonrigid/bspline_registration_gradient.m | 26,883 | utf_8 | d107b6f00167e8ba897651724938f155 | function [O_error, O_grad]=bspline_registration_gradient(O_grid,sizes,Spacing,I1,I2,options,MaskI1,MaskI2,Points1,Points2,PStrength)
% Function registration_gradient. This function will calculate a registration
% error value and gradient after b-spline non-rigid registration
% of two images / volumes.
%
% [error, ... |
github | MariusKlug/mobilab-master | bspline_grid_fitting.m | .m | mobilab-master/dependency/nonrigid_version23/functions_nonrigid/bspline_grid_fitting.m | 4,133 | utf_8 | 604e07a1f6464f93cac69a3f534f3b3b | function O_trans=bspline_grid_fitting(O,Spacing,D,X)
switch size(D,2)
case 2
O_trans=bspline_grid_fitting_2d(O,Spacing,D,X);
case 3
O_trans=bspline_grid_fitting_3d(O,Spacing,D,X);
otherwise
error('bspline_grid_fitting:input','unknown input dimmension');
end
function O_tran... |
github | MariusKlug/mobilab-master | bspline_coefficients.m | .m | mobilab-master/dependency/nonrigid_version23/functions_nonrigid/bspline_coefficients.m | 2,958 | utf_8 | a49759452b5320a635ae6707e5b2383d | function W=bspline_coefficients(u,v,w)
switch(nargin)
case 1
W = bspline_coefficients_1d(u);
case 2
W = bspline_coefficients_2d(u,v);
case 3
W = bspline_coefficients_3d(u,v,w);
end
function W=bspline_coefficients_1d(u)
W(:,1) = (1-u).^3/6;
W(:,2) = ( 3*u.^3 - 6*u.... |
github | MariusKlug/mobilab-master | jacobiandet_error_2d_double.m | .m | mobilab-master/dependency/nonrigid_version23/functions_nonrigid/jacobiandet_error_2d_double.m | 3,421 | utf_8 | 0e391440aa88c43a02df35d3d10abce3 | function [O_error, O_grad]=jacobiandet_error_2d_double(Ox,Oy,sizeI,dx,dy)
% Gradient and error of the Jacobian of the transformation grid
%
% [O_error, O_grad]=jacobiandet_error_2d_double(Ox,Oy,sizeI,dx,dy)
%
% Inputs,
% Ox, Oy : are the grid points coordinates
% Isize : The size of the input image [m n] ... |
github | MariusKlug/mobilab-master | make_transformation_matrix.m | .m | mobilab-master/dependency/nonrigid_version23/functions_affine/make_transformation_matrix.m | 2,650 | utf_8 | c1fa919598c8fce95e5e0c1fdb8d6737 | function M=make_transformation_matrix(t,r,s,h)
% This function make_transformation_matrix.m creates an affine
% 2D or 3D transformation matrix from translation, rotation, resize and shear parameters
%
% M=make_transformation_matrix.m(t,r,s,h)
%
% inputs (2D),
% t: vector [translateX translateY]
% r: vector... |
github | MariusKlug/mobilab-master | affine_registration_error.m | .m | mobilab-master/dependency/nonrigid_version23/functions_affine/affine_registration_error.m | 12,503 | utf_8 | 8b139e92ebc5b4cb0c47824deb5d8d8d | function [e,egrad]=affine_registration_error(par,scale,I1,I2,type,O_trans,Spacing,MaskI1,MaskI2,Points1,Points2,PStrength,mode)
% This function affine_registration_error, uses affine transfomation of the
% 3D input volume and calculates the registration error after transformation.
%
% [e,egrad]=affine_registration_... |
github | MariusKlug/mobilab-master | get_example_data.m | .m | mobilab-master/dependency/nonrigid_version23/low_level_examples/get_example_data.m | 1,430 | utf_8 | 5a4cf136955012cedf836b1b9cfb6bc1 | function [V1,V2]=get_example_data
% get_example_data is used to make some rigid and nonrigid transformed
% 3D MRI example data for the registration examples.
%
% example,
% [V1,V2]=get_example_data;
%
% Function is written by D.Kroon University of Twente (October 2008)
addpaths;
load mri; D=squeeze(D); V2=s... |
github | MariusKlug/mobilab-master | strsetmatch.m | .m | mobilab-master/dependency/PropertyGrid/strsetmatch.m | 953 | utf_8 | 5bdf3f3944690f5678bc5362dc151341 | % Indicator of which elements of a universal set are in a particular set.
%
% Input arguments:
% strset:
% the particular set as a cell array of strings
% struniversal:
% the universal set as a cell array of strings, all elements in the
% particular set are expected to be in the universal set
%
% Outp... |
github | MariusKlug/mobilab-master | helptext.m | .m | mobilab-master/dependency/PropertyGrid/helptext.m | 1,654 | utf_8 | 56e780c229ded39bb7ecd36b181f35f8 | % Help text associated with a function, class, property or method.
% Spaces are removed as necessary.
%
% See also: helpdialog
% Copyright 2008-2010 Levente Hunyadi
function text = helptext(obj)
if ischar(obj)
text = gethelptext(obj);
else
text = gethelptext(class(obj));
end
text = texttrim(text)... |
github | MariusKlug/mobilab-master | javaclass.m | .m | mobilab-master/dependency/PropertyGrid/javaclass.m | 3,722 | utf_8 | 5956d10630cadd5df145b93c0ce2534a | % Return java.lang.Class instance for MatLab type.
%
% Input arguments:
% mtype:
% the MatLab name of the type for which to return the java.lang.Class
% instance
% ndims:
% the number of dimensions of the MatLab data type
%
% See also: class
% Copyright 2009-2010 Levente Hunyadi
function jclass = ... |
github | MariusKlug/mobilab-master | helpdialog.m | .m | mobilab-master/dependency/PropertyGrid/helpdialog.m | 3,509 | utf_8 | f86bd0bd87b39268e6b463ebe2a05362 | % Displays a dialog to give help information on an object.
%
% Examples:
% helpdialog char
% gives information of character arrays
% helpdialog plot
% gives help on the plot command
% helpdialog(obj)
% gives help on the MatLab object obj
%
% See also: helptext, msgbox
% Copyright 2008-2010 Levente... |
github | MariusKlug/mobilab-master | getdependentproperties.m | .m | mobilab-master/dependency/PropertyGrid/getdependentproperties.m | 938 | utf_8 | abccd5c7f4e0fc6ba3daebb8ffa115b6 | % Publicly accessible dependent properties of an object.
%
% See also: meta.property
% Copyright 2010 Levente Hunyadi
function dependent = getdependentproperties(obj)
dependent = {};
if isstruct(obj) % structures have no dependent properties
return;
end
try
clazz = metaclass(obj);
catch %#ok<C... |
github | MariusKlug/mobilab-master | example_matrixeditor.m | .m | mobilab-master/dependency/PropertyGrid/example_matrixeditor.m | 488 | utf_8 | e2adde24c77a3ca577bb895ef8b3688c | % Demonstrates how to use the matrix editor.
%
% See also: MatrixEditor
% Copyright 2010 Levente Hunyadi
function example_matrixeditor
fig = figure( ...
'MenuBar', 'none', ...
'Name', 'Matrix editor demo - Copyright 2010 Levente Hunyadi', ...
'NumberTitle', 'off', ...
'Toolbar', 'none');
e... |
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