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values | md5 stringlengths 32 32 | text stringlengths 23 843k |
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github | buzsakilab/buzcoderough-master | specscope.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/spectral_analysis/specscope/specscope.m | 19,600 | utf_8 | 7a80433446556a39374dc808670147c4 | function outdata=specscope(indata)
% record and plot audio spectrogram
%
% Usage: outdata=specscope(indata)
%
% Input: indata (optional)
% Displays a recorded piece of data, if an argument is passed
% Otherwise displays audio data from an attached microphone
%
% Output: outdata (optional)
% If pres... |
github | buzsakilab/buzcoderough-master | rtf.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/spectral_analysis/specscope/rtf.m | 5,158 | utf_8 | ef3f23be6203e99d6a822c63a1d42b6d | function rtf(plot_frq,flag_save)
close all
evalin('base','stop=0;');
%=========SET THE BASIC FIGURE=================
fig = figure('Position',[500,500,800,600],...
'NumberTitle','off',...
'Name','Scope',...
'doublebuffer','on',...
'HandleVisibility','on',...
'Ke... |
github | buzsakilab/buzcoderough-master | specscopepp.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/spectral_analysis/specscope/specscopepp.m | 20,341 | utf_8 | d9fe57a8dd870b4a1832ba73ec208a29 | function outdata=specscopepp(indata)
global acq;
h=hamming(5);
mins=5e-008;
maxs=1e-004;
% record and plot audio spectrogram
%
% Usage: outdata=specscope(indata)
%
% Input: indata (optional)
% Displays a recorded piece of data, if an argument is passed
% Otherwise displays audio data from an att... |
github | buzsakilab/buzcoderough-master | lfgui.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/locfit/m/lfgui.m | 4,018 | utf_8 | 3b6eace9dc5a0057fb2c8b221751aa6d | function varargout = lfgui(varargin)
% LFGUI M-file for lfgui.fig
% LFGUI, by itself, creates a new LFGUI or raises the existing
% singleton*.
%
% H = LFGUI returns the handle to a new LFGUI or the handle to
% the existing singleton*.
%
% LFGUI('CALLBACK',hObject,eventData,handles,...) calls th... |
github | buzsakilab/buzcoderough-master | auto_classify.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/wave_browser/auto_classify.m | 25,074 | utf_8 | ba0678a9e6434290035fdb708a1d8009 | function varargout = auto_classify(varargin)
% AUTO_CLASSIFY M-file for auto_classify.fig
% AUTO_CLASSIFY, by itself, creates a new AUTO_CLASSIFY or raises the existing
% singleton*.
%
% H = AUTO_CLASSIFY returns the handle to a new AUTO_CLASSIFY or the handle to
% the existing singleton*.
%
... |
github | buzsakilab/buzcoderough-master | wave_browser.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/wave_browser/wave_browser.m | 57,029 | utf_8 | 2587b6831317c05fd90c35f38a964c93 | function varargout = wave_browser(varargin)
% WAVE_BROWSER M-file for wave_browser.fig
% WAVE_BROWSER, by itself, creates a new WAVE_BROWSER or raises the existing
% singleton*.
%
% H = WAVE_BROWSER returns the handle to a new WAVE_BROWSER or the handle to
% the existing singleton*.
%
% ... |
github | buzsakilab/buzcoderough-master | classify_spectra.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/wave_browser/classify_spectra.m | 108,297 | utf_8 | 93fe2f22d145ba63cb667b18b3b33d0d | function varargout = classify_spectra(varargin)
% CLASSIFY_SPECTRA M-file for classify_spectra.fig
% CLASSIFY_SPECTRA, by itself, creates a new CLASSIFY_SPECTRA or raises the existing
% singleton*.
%
% H = CLASSIFY_SPECTRA returns the handle to a new CLASSIFY_SPECTRA or
% the handle to
% the ex... |
github | buzsakilab/buzcoderough-master | configure_classify.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/wave_browser/configure_classify.m | 17,864 | utf_8 | d66bfd4213ddebc5ac867dcafec8703a | function varargout = configure_classify(varargin)
% CONFIGURE_CLASSIFY M-file for configure_classify.fig
% CONFIGURE_CLASSIFY, by itself, creates a new CONFIGURE_CLASSIFY or raises the existing
% singleton*.
%
% H = CONFIGURE_CLASSIFY returns the handle to a new CONFIGURE_CLASSIFY or the handle to
... |
github | buzsakilab/buzcoderough-master | FAnalyze.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/fly_track/FAnalyze/functions/FAnalyze.m | 28,275 | utf_8 | 00157164be68669eaae8ee557d8f0e27 | function varargout = FAnalyze(varargin)
% FANALYZE
% For all your trajectory analysis needs! . See documentation for usage details.
%Written by Dan Valente
%November 2007
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui... |
github | buzsakilab/buzcoderough-master | videoReader.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/fly_track/videoIO/videoIO_2006b/@videoReader/videoReader.m | 5,758 | utf_8 | 66a56561d4e6c547cf2bac07861a94f6 | function vr = videoReader(url, varargin)
% videoReader class constructor
% Creates a object that reads video streams. We use a plugin
% architecture in the backend to do the actual reading. For example,
% on Windows, DirectShow will typically be used and on Linux, the
% ffmpeg library is often used.
... |
github | buzsakilab/buzcoderough-master | videoWriter.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/fly_track/videoIO/videoIO_2006b/@videoWriter/videoWriter.m | 11,485 | utf_8 | 0869234180baa12b3217c3ac04df67ed | function vw = videoWriter(url, varargin)
% videoWriter class constructor
% Creates a object that writes video files. We use a plugin
% architecture in the backend to do the actual writing. For example,
% on Windows, DirectShow will typically be used and on Linux, the
% ffmpeg library is often used.
%... |
github | buzsakilab/buzcoderough-master | videoReader.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/fly_track/videoIO/videoIO_2006a/@videoReader/videoReader.m | 5,758 | utf_8 | 66a56561d4e6c547cf2bac07861a94f6 | function vr = videoReader(url, varargin)
% videoReader class constructor
% Creates a object that reads video streams. We use a plugin
% architecture in the backend to do the actual reading. For example,
% on Windows, DirectShow will typically be used and on Linux, the
% ffmpeg library is often used.
... |
github | buzsakilab/buzcoderough-master | videoWriter.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/fly_track/videoIO/videoIO_2006a/@videoWriter/videoWriter.m | 11,485 | utf_8 | 0869234180baa12b3217c3ac04df67ed | function vw = videoWriter(url, varargin)
% videoWriter class constructor
% Creates a object that writes video files. We use a plugin
% architecture in the backend to do the actual writing. For example,
% on Windows, DirectShow will typically be used and on Linux, the
% ffmpeg library is often used.
%... |
github | buzsakilab/buzcoderough-master | videoReader.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/fly_track/videoIO/videoIO_2007a/@videoReader/videoReader.m | 5,758 | utf_8 | 66a56561d4e6c547cf2bac07861a94f6 | function vr = videoReader(url, varargin)
% videoReader class constructor
% Creates a object that reads video streams. We use a plugin
% architecture in the backend to do the actual reading. For example,
% on Windows, DirectShow will typically be used and on Linux, the
% ffmpeg library is often used.
... |
github | buzsakilab/buzcoderough-master | videoWriter.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/fly_track/videoIO/videoIO_2007a/@videoWriter/videoWriter.m | 11,485 | utf_8 | 0869234180baa12b3217c3ac04df67ed | function vw = videoWriter(url, varargin)
% videoWriter class constructor
% Creates a object that writes video files. We use a plugin
% architecture in the backend to do the actual writing. For example,
% on Windows, DirectShow will typically be used and on Linux, the
% ffmpeg library is often used.
%... |
github | buzsakilab/buzcoderough-master | FTrack.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/chronux_2_10/chronux/fly_track/FTrack/functions/FTrack.m | 20,317 | utf_8 | ec3ca4a2695761e114cd56210fe3ac51 | function varargout = FTrack(varargin)
% FTRACK
% For all your fly-tracking needs! . See documentation for usage details.
% Last Modified by GUIDE v2.5 26-Nov-2007 18:07:29
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui... |
github | buzsakilab/buzcoderough-master | pdftops.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/pdftops.m | 3,068 | utf_8 | 7a40ce10e58d68cd7eeda67992b993f3 | function varargout = pdftops(cmd)
%PDFTOPS Calls a local pdftops executable with the input command
%
% Example:
% [status result] = pdftops(cmd)
%
% Attempts to locate a pdftops executable, finally asking the user to
% specify the directory pdftops was installed into. The resulting path is
% stored for futur... |
github | buzsakilab/buzcoderough-master | isolate_axes.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/isolate_axes.m | 3,484 | utf_8 | 3997011940bb5b146bf10032a9cec39a | %ISOLATE_AXES Isolate the specified axes in a figure on their own
%
% Examples:
% fh = isolate_axes(ah)
% fh = isolate_axes(ah, vis)
%
% This function will create a new figure containing the axes/uipanels
% specified, and also their associated legends and colorbars. The objects
% specified must all be in th... |
github | buzsakilab/buzcoderough-master | pdf2eps.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/pdf2eps.m | 1,524 | utf_8 | 037f9109e96ab4385d13019a29db4639 | %PDF2EPS Convert a pdf file to eps format using pdftops
%
% Examples:
% pdf2eps source dest
%
% This function converts a pdf file to eps format.
%
% This function requires that you have pdftops, from the Xpdf suite of
% functions, installed on your system. This can be downloaded from:
% http://www.foolabs.c... |
github | buzsakilab/buzcoderough-master | print2array.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/print2array.m | 6,474 | utf_8 | 4ead930267fe61c9b2a87139ee559dc8 | %PRINT2ARRAY Exports a figure to an image array
%
% Examples:
% A = print2array
% A = print2array(figure_handle)
% A = print2array(figure_handle, resolution)
% A = print2array(figure_handle, resolution, renderer)
% [A bcol] = print2array(...)
%
% This function outputs a bitmap image of the given fig... |
github | buzsakilab/buzcoderough-master | eps2pdf.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/eps2pdf.m | 5,151 | utf_8 | b356d73460fdebe8ef6fa428d5b2c125 | %EPS2PDF Convert an eps file to pdf format using ghostscript
%
% Examples:
% eps2pdf source dest
% eps2pdf(source, dest, crop)
% eps2pdf(source, dest, crop, append)
% eps2pdf(source, dest, crop, append, gray)
% eps2pdf(source, dest, crop, append, gray, quality)
%
% This function converts an eps file... |
github | buzsakilab/buzcoderough-master | copyfig.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/copyfig.m | 846 | utf_8 | 289162022c603c9e11a52b6d56329188 | %COPYFIG Create a copy of a figure, without changing the figure
%
% Examples:
% fh_new = copyfig(fh_old)
%
% This function will create a copy of a figure, but not change the figure,
% as copyobj sometimes does, e.g. by changing legends.
%
% IN:
% fh_old - The handle of the figure to be copied. Default: gc... |
github | buzsakilab/buzcoderough-master | user_string.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/user_string.m | 2,462 | utf_8 | dd1a7fa5b4f2be6320fc2538737a2f3e | %USER_STRING Get/set a user specific string
%
% Examples:
% string = user_string(string_name)
% saved = user_string(string_name, new_string)
%
% Function to get and set a string in a system or user specific file. This
% enables, for example, system specific paths to binaries to be saved.
%
% IN:
% string_name - ... |
github | buzsakilab/buzcoderough-master | export_fig.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/export_fig.m | 29,829 | utf_8 | e148a5b614ce2226be691f291726feb2 | %EXPORT_FIG Exports figures suitable for publication
%
% Examples:
% im = export_fig
% [im alpha] = export_fig
% export_fig filename
% export_fig filename -format1 -format2
% export_fig ... -nocrop
% export_fig ... -transparent
% export_fig ... -native
% export_fig ... -m<val>
% export_fig... |
github | buzsakilab/buzcoderough-master | ghostscript.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/ghostscript.m | 4,342 | utf_8 | 0be326f9358200c733989260a0649af9 | %GHOSTSCRIPT Calls a local GhostScript executable with the input command
%
% Example:
% [status result] = ghostscript(cmd)
%
% Attempts to locate a ghostscript executable, finally asking the user to
% specify the directory ghostcript was installed into. The resulting path
% is stored for future reference.
% ... |
github | buzsakilab/buzcoderough-master | print2eps.m | .m | buzcoderough-master/Packages/FMAToolbox/ExternalFunctionsForFMAToolbox/ExportFig/print2eps.m | 7,809 | utf_8 | 7c4a232dc6574c7702a7550ebd0d6e44 | %PRINT2EPS Prints figures to eps with improved line styles
%
% Examples:
% print2eps filename
% print2eps(filename, fig_handle)
% print2eps(filename, fig_handle, options)
%
% This function saves a figure as an eps file, with two improvements over
% MATLAB's print command. First, it improves the line styl... |
github | buzsakilab/buzcoderough-master | LoadBinary.m | .m | buzcoderough-master/Packages/FMAToolbox/IO/LoadBinary.m | 9,993 | iso_8859_13 | 7dd8441ab214fc5ff351523c2c7d3cd7 | function data = LoadBinary(filename,varargin)
%LoadBinary - Load data from a multiplexed binary file.
%
% Reading a subset of the data can be done in two different manners: either
% by specifying start time and duration (more intuitive), or by indicating
% the position and size of the subset in terms of numbe... |
github | buzsakilab/buzcoderough-master | LoadSpikeWaveforms.m | .m | buzcoderough-master/Packages/FMAToolbox/IO/LoadSpikeWaveforms.m | 11,791 | utf_8 | 6d6fb4ffc01b6362ed3ab50b1e8e04e6 | function waveforms = LoadSpikeWaveforms(filename,nChannels,nSamples,list)
%LoadSpikeWaveforms - Read spike waveforms from disk.
%
% USAGE
%
% waveforms = LoadSpikeWaveforms(filename,nChannels,nSamples,list)
%
% filename spike waveform file name
% nChannels number of channels in ... |
github | buzsakilab/buzcoderough-master | LoadBinary_FMA.m | .m | buzcoderough-master/Packages/FMAToolbox/IO/LoadBinary_FMA.m | 9,997 | iso_8859_13 | dde7f19e7f7ec6d1121ff3e356228b1d | function data = LoadBinary_FMA(filename,varargin)
%LoadBinary - Load data from a multiplexed binary file.
%
% Reading a subset of the data can be done in two different manners: either
% by specifying start time and duration (more intuitive), or by indicating
% the position and size of the subset in terms of n... |
github | buzsakilab/buzcoderough-master | MultiPlotXY.m | .m | buzcoderough-master/Packages/FMAToolbox/Plot/MultiPlotXY.m | 2,818 | iso_8859_13 | 4604aa687edcccd7627be9cc2b1508c4 | function p = MultiPlotXY(varargin)
%MultiPlotXY - Plot two columns of each input matrix against each other.
%
% Plot the second column of each input matrix as a function of the first column.
% Optionally, alternative pairs of columns can be plotted against each other.
%
% USAGE
%
% p = MultiPlotXY(X,columns,Y,colu... |
github | buzsakilab/buzcoderough-master | HTML.m | .m | buzcoderough-master/Packages/FMAToolbox/Plot/HTML.m | 2,795 | iso_8859_13 | 54388c73d798165de07e983a08a7b2e3 | function out = HTML(in,format)
%HTML - Create HTML formatted string.
%
% Important note: Matlab UITables are buggy! Therefore, HTML formatted table
% cells will not be rendered satisfactorily (e.g. you will experience problems
% with alignment and cell width). This function does not try to compensate for
% these b... |
github | buzsakilab/buzcoderough-master | Browse.m | .m | buzcoderough-master/Packages/FMAToolbox/Plot/Browse.m | 13,767 | iso_8859_13 | f777dea8e652af560719a1007a9944de | function Browse(parameter1,parameter2)
%Browse - Interactively browse the data in one or all subplots in a figure.
%
% USAGE
%
% Browse(figure,'on') % enable browsing for this figure
% Browse(figure,'off') % disable browsing for this figure
% Browse('on') % enable browsing for all new figures
% ... |
github | buzsakilab/buzcoderough-master | TuneArtefactTimes.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/TuneArtefactTimes.m | 5,502 | iso_8859_13 | 606f8bfef8b64e99e16dc468a7be1f05 | function tuned = TuneArtefactTimes(x,times,varargin)
%TuneArtefactTimes - Fine-tune artefact (e.g. stimulation) times.
%
% Fine tuning can be done using either the LFP (faster), or the wideband
% data (slower but more accurate). The latter is especially useful in cases
% where the artefacts are no longer visible in... |
github | buzsakilab/buzcoderough-master | TestRemapping.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/TestRemapping.m | 12,516 | iso_8859_13 | fb408bd980ce80c60c1e613bfebfae3b | function [h,p,cr,ca] = TestRemapping(control,repeat,test,varargin)
%TestRemapping - Test if firing fields remap (or shift) between two conditions.
%
% To test for random remapping between a control and a test condition, we
% first estimate for each place cell the absolute field shift between the two
% conditions, a... |
github | buzsakilab/buzcoderough-master | RadialMaze.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/RadialMaze.m | 22,222 | iso_8859_13 | efd7fc31df35c1981b64a2bdadce51a8 | function [counts,indices] = RadialMaze(data,baitedArms,varargin)
%RadialMaze - Compute simple statistics for the 8-arm radial maze task.
%
% Compute the number of reference and working memory errors, rewards found, etc.
%
% USAGE
%
% [counts,indices] = RadialMaze(data,baitedArms,<options>)
%
% data li... |
github | buzsakilab/buzcoderough-master | CV.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/CV.m | 4,713 | iso_8859_13 | b072c5fb87a5508a4e8b0e3c08862d9f | function [coeff,local] = CV(timestamps,varargin)
%CV - Compute coefficient of variation for a point process.
%
% Three alternative measures can be computed: regular CV, CV in operational time
% (Gestri and Petracchi, 1970; Nawrot et al., 2008) or CV2 (Holt et al., 2006).
%
% While the CV is typically computed for cons... |
github | buzsakilab/buzcoderough-master | FitCCG.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/FitCCG.m | 4,505 | iso_8859_13 | 0bf0a63a06f3d3f77779aa28cb52adbf | function [dt1,dt2,Travel,index] = FitCCG(t,ccg,varargin)
%FitCCG - Fit dampened sinewave to the cross-correlogram of a pair of theta-modulated cells.
%
% USAGE
%
% [dt1,dt2,index] = FitCCG(t,ccg,<options>)
%
% t time bins
% ccg cross-correlogram
% <options> optional list of pr... |
github | buzsakilab/buzcoderough-master | MapStats.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/MapStats.m | 9,719 | utf_8 | bbf8419238e21a68ea8645afd9a5470c | function stats = MapStats(map,varargin)
%MapStats - Compute statistics for a map Z = f(X,Y), or a curve Z = f(X).
%
% Compute statistics on a continuous map, where one time-varying variable Z
% is represented as a function of one or two time-varying variables X and Y.
% The variable Z can either be a point process ... |
github | buzsakilab/buzcoderough-master | TestSkewness.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/TestSkewness.m | 6,886 | iso_8859_13 | 8e0dbbe3bad0b6ae56090870dcd83c3b | function [h,p,stats] = TestSkewness(control,repeat,test,varargin)
%TestSkewness - Test if firing field skewness changes between two conditions.
%
% Current implementation only tests 1D environments.
%
% USAGE
%
% [h,p,cr,ca] = TestSkewness(control,repeat,test,<options>)
%
% control firing fields in cont... |
github | buzsakilab/buzcoderough-master | FindRipples.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/FindRipples.m | 10,997 | iso_8859_13 | dcd04ec1fd18c31d9e498e61ba52e413 | function [ripples,sd,bad] = FindRipples(filtered,varargin)
%FindRipples - Find hippocampal ripples (100~200Hz oscillations).
%
% USAGE
%
% [ripples,stdev,noise] = FindRipples(filtered,<options>)
%
% Ripples are detected using the normalized squared signal (NSS) by
% thresholding the baseline, merging neighbo... |
github | buzsakilab/buzcoderough-master | IsolationDistance.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/IsolationDistance.m | 5,559 | iso_8859_13 | 95c449552a6f8ba96f118aa446ce91ea | function [distance,units] = IsolationDistance(features,varargin)
%IsolationDistance - Determine the isolation quality for one or more clusters.
%
% Compute isolation distance, as defined by K. Harris (see Schmitzer-Torbert
% et al. 2005).
%
% USAGE
%
% [d,units] = IsolationDistance(features,<options>)
%
% featu... |
github | buzsakilab/buzcoderough-master | PETHTransition.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/PETHTransition.m | 7,209 | iso_8859_13 | 4b529be9bc077fd14d28903a497e380c | function delay = PETHTransition(psth,timeBins,varargin)
%PETHTransition - Find a transition point in a peri-event time histogram (PETH).
%
% Find a transition point in a peri-event time histogram using the maximum
% likelihood or mean square error algorithm of Friedman and Priebe (1998), or
% piecewise linear fi... |
github | buzsakilab/buzcoderough-master | CheckChronux.m | .m | buzcoderough-master/Packages/FMAToolbox/Analyses/private/CheckChronux.m | 540 | iso_8859_13 | 2396b4f1141f094c838b03f16a692f01 | %CheckChronux - Make sure chronux is installed and functional.
%
% USAGE
%
% CheckChronux
% Copyright (C) 2007-2010 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; eithe... |
github | buzsakilab/buzcoderough-master | GetEventTypes.m | .m | buzcoderough-master/Packages/FMAToolbox/Data/GetEventTypes.m | 1,733 | iso_8859_13 | d32b7482122e6f7168a18d075c006f54 | function descriptions = GetEventTypes(selection)
%GetEventTypes - Get event types (= unique descriptions).
%
% USAGE
%
% descriptions = GetEventTypes(selection)
%
% selection optional patterns of event descriptions; see examples below
%
% EXAMPLES
%
% % Get all event descriptions
% descriptions = Ge... |
github | buzsakilab/buzcoderough-master | GetCurrentSession.m | .m | buzcoderough-master/Packages/FMAToolbox/Data/GetCurrentSession.m | 3,026 | iso_8859_13 | fc5b54355530eb2aa41e6b37d3cdb5c7 | function info = GetCurrentSession(verbose)
%GetCurrentSession - Get information about current session.
%
% USAGE
%
% GetCurrentSession
% GetCurrentSession('verbose') % detailed output
%
% info = GetCurrentSession % return info (do not display)
% Copyright (C) 2008-2011 by Michaël Zugaro
%
% This program i... |
github | buzsakilab/buzcoderough-master | GetEvents.m | .m | buzcoderough-master/Packages/FMAToolbox/Data/GetEvents.m | 3,731 | iso_8859_13 | 75df81e843302f4bca3cb5eef7c6b327 | function events = GetEvents(selection,varargin)
%GetEvents - Get events.
%
% USAGE
%
% events = GetEvents(selection,<options>)
%
% selection optional list of event descriptions; see examples below
% <options> optional list of property-value pairs (see table below)
%
% ===========================... |
github | buzsakilab/buzcoderough-master | DBMatchValues.m | .m | buzcoderough-master/Packages/FMAToolbox/Database/DBMatchValues.m | 5,446 | iso_8859_13 | 026118c64e649eb15782953106b0d1f0 | function [in1,in2,out1,out2,eid1,eid2] = DBMatchValues(eid1,eid2,rexp)
%DBMatchValues - Match values for two different sets of variables.
%
% It is often necessary to match (associate) variables that were computed
% independently, e.g. the phase precession slope and field size of hippocampal
% place cells. Typicall... |
github | buzsakilab/buzcoderough-master | GetNextItem.m | .m | buzcoderough-master/Packages/FMAToolbox/Database/private/GetNextItem.m | 887 | iso_8859_13 | 041fc2099c7995d8ea048b07de782e16 | %GetNextItem - Get next item from a Batch object (iterator mode).
%
% This is a helper class to easily read and parse batch files.
%
% USAGE
%
% [b,item,line] = GetNextItem(b);
%
% b batch object
% Copyright (C) 2007 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/o... |
github | buzsakilab/buzcoderough-master | RunBatch.m | .m | buzcoderough-master/Packages/FMAToolbox/Database/private/RunBatch.m | 2,556 | iso_8859_13 | ebadbd41ed526c8cfc9a7216c9e5920d | %RunBatch - Run a batch job. This should *not* be called directly.
%
% Run a batch job. This function is called automatically by the
% batch timer upon expiration of the required delay.
%
% USAGE
%
% RunBatch(timer,event,b)
%
% timer Matlab timer object
% event Matlab timer event type
% b... |
github | buzsakilab/buzcoderough-master | CheckMyM.m | .m | buzcoderough-master/Packages/FMAToolbox/Database/private/CheckMyM.m | 963 | iso_8859_13 | e39755b1b446bcbd4b795620da574f2e | %CheckMyM - Make sure mym is installed and functional.
%
% Connectivity to MySQL database server depends on mym. Make sure
% this is installed and functional.
%
% USAGE
%
% CheckMyM
% Copyright (C) 2007-2010 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/or modify
% it under the t... |
github | buzsakilab/buzcoderough-master | GetNextField.m | .m | buzcoderough-master/Packages/FMAToolbox/Database/private/GetNextField.m | 916 | iso_8859_13 | ec71ac9e0178c89bb7015a77d9b96423 | %GetNextField - Get next field from a Batch object (iterator mode).
%
% This is a helper class to easily read and parse batch files.
%
% USAGE
%
% [b,field] = GetNextField(b);
%
% b batch object
% Copyright (C) 2007 by Michaël Zugaro
%
% This program is free software; you can redistribute it and/or... |
github | buzsakilab/buzcoderough-master | Detrend.m | .m | buzcoderough-master/Packages/FMAToolbox/General/Detrend.m | 4,299 | iso_8859_13 | 1487762bf9910b1cf29ee4ad24ad8bd7 | %Detrend - Detrend signal.
%
% USAGE
%
% [detrended,model] = Detrend(samples,<options>)
%
% samples list of (t,v1...vn) samples
% <options> optional list of property-value pairs (see table below)
%
% =========================================================================
% Properties V... |
github | buzsakilab/buzcoderough-master | ConcentrationTest.m | .m | buzcoderough-master/Packages/FMAToolbox/General/ConcentrationTest.m | 3,301 | iso_8859_13 | afee335d35dc61f47417e2e4284ce96a | function [h,p] = ConcentrationTest(angles,group,alpha,nRandomizations)
%ConcentrationTest - Test homogeneity of concentration parameters.
%
% Test whether the concentration parameters for N groups of circular data are equal.
% The data are assumed to have Von Mises distributions. If the median concentration
% is infer... |
github | buzsakilab/buzcoderough-master | CircularANOVA.m | .m | buzcoderough-master/Packages/FMAToolbox/General/CircularANOVA.m | 6,274 | utf_8 | 7c9dc2a6e9f7ab60c77ca9f878e2705e | function [p,F] = CircularANOVA(angles,factors,method)
%CircularANOVA - One or two-way ANOVA on circular data.
%
% Circular ANOVA can be performed using one of three methods with different
% assumptions and limitations:
%
% 1) Watson & Williams (1956)
% The data are drawn from von Mises distributions with ... |
github | buzsakilab/buzcoderough-master | CircularRegression.m | .m | buzcoderough-master/Packages/FMAToolbox/General/CircularRegression.m | 8,936 | utf_8 | 6e00b4b4890dde3c2c812d0975f33625 | function [beta,R2,p] = CircularRegression(x,angles,p,varargin)
%CircularRegression - Linear-circular regression.
%
% There are three possible methods to estimate the regression parameters:
%
% 1) Use the method of Kempter et al. (2012). The slope maximizes the resultant length
% of the residual distribution, the... |
github | buzsakilab/buzcoderough-master | wavelet.m | .m | buzcoderough-master/Spikes/CellTypeClassification/BrendonClassificationFromStark2013/wavelet.m | 5,970 | utf_8 | 948169c495971d4616b513328a785fd7 | %WAVELET 1D Wavelet transform with optional singificance testing
%
% [WAVE,PERIOD,SCALE,COI] = wavelet(Y,DT,PAD,DJ,S0,J1,MOTHER,PARAM)
%
% Computes the wavelet transform of the vector Y (length N),
% with sampling rate DT.
%
% By default, the Morlet wavelet (k0=6) is used.
% The wavelet basis is norm... |
github | buzsakilab/buzcoderough-master | getWavelet.m | .m | buzcoderough-master/Spikes/CellTypeClassification/BrendonClassificationFromStark2013/getWavelet.m | 15,140 | utf_8 | 02847ee973e1bee76b4a7eaf4c606466 | % [ wave, f, t, coh, phases, raw, coi, scale, period, scalef ] = getWavelet( x, Fs, fMin, fMax, nbins, graphics )
%
% x:
% vector - wavelet analysis is applied
% multi-column matrix - wavelet analysis is applied to each column
% separately
%
% two-column matrix - treated as two time series and the csd, coherenc... |
github | buzsakilab/buzcoderough-master | BWCellClassification.m | .m | buzcoderough-master/Spikes/CellTypeClassification/BrendonClassificationFromStark2013/BWCellClassification.m | 5,363 | utf_8 | 9a8a249063d7e821ef3d69a2509ada07 | % function [CellClassOutput, PyrBoundary] = BWCellClassification (fileBase, SpkWvform_all, SpkWvform_idx, Cells, ECells, ICells)
function [CellClassOutput, PyrBoundary,Waveforms] = BWCellClassification (filebasename, cellshanknums, shanks, ESynapseCells, ISynapseCells)
% Loads cell spike waveforms from the local fold... |
github | buzsakilab/buzcoderough-master | LoadSpikeWaveforms_BW.m | .m | buzcoderough-master/Spikes/CellTypeClassification/BrendonClassificationFromStark2013/LoadSpikeWaveforms_BW.m | 11,935 | utf_8 | 588e5f8a623a5998633502a852f36c1e | function waveforms = LoadSpikeWaveforms_BW(filename,nChannels,nSamples,list)
% Totally stolen from FMA toolbox... I just added the proper LoadBinary
% func to the bottom of this - Brendon Watson 2014
%
%LoadSpikeWaveforms - Read spike waveforms from disk.
%
% USAGE
%
% waveforms = LoadSpikeWaveforms(filenam... |
github | buzsakilab/buzcoderough-master | CCG_jitter.m | .m | buzcoderough-master/Spikes/SynapticTimescaleConnectivity/ShigeAndHan/CCG_jitter.m | 4,969 | utf_8 | 43429f1067e574f6ef3cd2b6a87db800 | %
% function [ccgR,tR,GSPExc,GSPInh,ccgjMtx,ccgjstats]=CCG_jitter(spiket,spikeind,clu1,clu2,dataSampFreq,BinSize,HalfBins,jscale,njitter,alpha,PresenBoolen)
%
% ---------------------------------------------------
% INPUTS
% spiket, spikeind : res file, clu file
% clu1, clu2 : the cell numbers
% dataSampFr... |
github | buzsakilab/buzcoderough-master | CCG_jitter_ReviewPositives.m | .m | buzcoderough-master/Spikes/SynapticTimescaleConnectivity/ShigeAndHan/CCG_jitter_ReviewPositives.m | 6,136 | utf_8 | 019ac853b039bf4b8d9230ffc87d6bcf | function CCG_jitter_ReviewPositives(ccgjitteroutput,outputvarname)
% Takes output of ccg_jitter_all.m and plots positive connections as ccr
% plots for visualization.
% Brendon Watson 2012,2014
allreviewfigs = [];
if ~exist('outputvarname','var')
outputvarname = 'ccgjitterreviewoutput';
end
%% connections are pr... |
github | buzsakilab/buzcoderough-master | CCG_jitter_ReviewPositives2.m | .m | buzcoderough-master/Spikes/SynapticTimescaleConnectivity/ShigeAndHan/CCG_jitter_ReviewPositives2.m | 5,329 | utf_8 | e03de1bf6e3836896e76d29471fdaa97 | function CCG_jitter_ReviewPositives(ccgjitteroutput)
% Takes output of ccg_jitter_all.m and plots positive connections as ccr
% plots for visualization.
% Brendon Watson 2012,2014
h1 = figure('Visible','Off');
allreviewfigs = [];
%% connections are pre-recorded in ccgjitteroutput, gather them up
AllConnections = ca... |
github | buzsakilab/buzcoderough-master | cch_conv.m | .m | buzcoderough-master/Spikes/SynapticTimescaleConnectivity/Eran/cch_conv.m | 5,142 | utf_8 | 6b1e300c88798d43e8736ffb5c47b5c0 | % CCH_CONV predictor and p-values for CCH using convolution
%
% CALL [ PVALS, PRED, QVALS ] = CCH_CONV( CCH, W )
%
% GETS CCH vector (a single CCH) or matrix (CCHs in columns)
% has to be non-negative integ... |
github | buzsakilab/buzcoderough-master | SpikeTransfer_Norm2.m | .m | buzcoderough-master/Spikes/SynapticTimescaleConnectivity/Brendon/SpikeTransfer_Norm2.m | 12,958 | utf_8 | 728d2a5ddb62a247395b612fb1c41967 | function [strengthbyratio, strengthbyratechg, varargout] = SpikeTransfer_Norm2(times1,times2,binSize,duration,sigbinms,ConvWidth,sameshank,SampleRate)
% Calculates the spiking amplitiude in a pair of cells in bins of interest
% vs that predicted by the nearby ccg of the same pair. (Time restriction
% on S can happen... |
github | buzsakilab/buzcoderough-master | plot_ccgfromfuncsynapses.m | .m | buzcoderough-master/Spikes/SynapticTimescaleConnectivity/Brendon/plot_ccgfromfuncsynapses.m | 9,061 | utf_8 | c599e1a77e71b1a02853f87824f9a694 | function plot_ccgfromfuncsynapses(S,cellidx1,cellidx2)
% sameshank = funcsynapses.CellShanks(pre) == funcsynapses.CellShanks(post);
% HalfCCGWidthinms = (size(funcsynapses.fullCCGMtx,1)-1)/2*funcsynapses.BinMs;
% ConvWidth = funcsynapses.ConvolutionWidthInBins;
% BinMs = funcsynapses.BinMs;
BinMs = 1;
duration = 300;... |
github | buzsakilab/buzcoderough-master | FindSynapse_ReviewOutput.m | .m | buzcoderough-master/Spikes/SynapticTimescaleConnectivity/Brendon/FindSynapse_ReviewOutput.m | 14,867 | utf_8 | 1ef0a455640c2f75a6f98fba8480e2fa | function invisfig = FindSynapse_ReviewOutput(funcsynapses,rawS,outputvarname,allpresyn,badcnxns)
% Takes output of FindSynapse.m and plots positive connections as ccr
% plots for review and clickable deletions of bad connections.
% INPUTS
% funcsynapses - struct array containing population connectivity information,
% ... |
github | buzsakilab/buzcoderough-master | PlotCcgFromS.m | .m | buzcoderough-master/Spikes/SynapticTimescaleConnectivity/Brendon/PlotCcgFromS.m | 9,048 | utf_8 | 06dfb1d74806e44e2578e9fca5f0fcc2 | function PlotCcgFromS(S,cellidx1,cellidx2)
% sameshank = funcsynapses.CellShanks(pre) == funcsynapses.CellShanks(post);
% HalfCCGWidthinms = (size(funcsynapses.fullCCGMtx,1)-1)/2*funcsynapses.BinMs;
% ConvWidth = funcsynapses.ConvolutionWidthInBins;
% BinMs = funcsynapses.BinMs;
BinMs = 1;
duration = 300;%timepoints
... |
github | buzsakilab/buzcoderough-master | FindZeroLagCorr.m | .m | buzcoderough-master/Spikes/SynapticTimescaleConnectivity/Brendon/FindZeroLagCorr.m | 17,859 | utf_8 | b3c353f914a930383a5989804fc3a87f | function [synStrZ,synStrR,synStart,synEnd,synWideStart,synWideEnd,sigBounds] = FindZeroLagCorr(cch,varargin)
% function [synLat,synStrZ,synStrR,sigBounds,synFlip] = FindZeroLagCorr(cch,varargin)
%
% FindZeroLagCorr - find zero-lag temporal correlations between pairs of cells.
% Based on FindSynapse.m
%
% USAGE
% [sy... |
github | buzsakilab/buzcoderough-master | TheStateEditor.m | .m | buzcoderough-master/BehavioralStateDetection/TheStateEditor/TheStateEditor.m | 174,962 | UNKNOWN | 6145ebd251a9c3e15aeeea61593b02ff | %function StateEditorProBeta(baseName, inputData, supressGUI, makePortable)
% SIMPLE USAGE (NO INPUT VARIABLES, if run from dir with .xml and .eeg/lfp):
% Add StateEditor to your Matlab path. Within Matlab navigate to a folder
% containing '.xml' and '.eeg' (or '.lfp') files. Type in the name of this
% .m file and... |
github | buzsakilab/buzcoderough-master | LoadBinaryChunk.m | .m | buzcoderough-master/DataToMatlab/Traditional/LoadBinaryChunk.m | 4,501 | iso_8859_13 | ea51ea77befb3680ba8e93daed115de1 | %LoadBinaryChunk - Load data chunck from an open binary file.
%
% USAGE
%
% data = LoadBinaryChunk(fid,<options>)
%
% fid file id (obtained via fopen)
% <options> optional list of property-value pairs (see table below)
%
% ====================================================================... |
github | buzsakilab/buzcoderough-master | LoadBinary.m | .m | buzcoderough-master/DataToMatlab/Traditional/LoadBinary.m | 6,350 | iso_8859_13 | 735247a1cd798bf952d9848652b51b11 | %LoadBinary - Load data from a binary file.
%
% USAGE
%
% data = LoadBinary(filename,<options>)
%
% filename file to read
% <options> optional list of property-value pairs (see table below)
%
% =========================================================================
% Properties Values
%... |
github | buzsakilab/buzcoderough-master | LoadSpikeWaveforms.m | .m | buzcoderough-master/DataToMatlab/Traditional/LoadSpikeWaveforms.m | 871 | iso_8859_13 | 8bbfa0dd143ae134c8fbd50831221d7e | %LoadSpikeWaveforms - Read spike waveforms from file.
%
% USAGE
%
% waveforms = LoadSpikeWaveforms(filename,nChannels,nSamples)
%
% filename spike waveform file name
% nChannels number of channels in electrode group
% nSamples number of samples per waveform
% Copyright ... |
github | buzsakilab/buzcoderough-master | LoadFet.m | .m | buzcoderough-master/DataToMatlab/Traditional/LoadFet.m | 938 | utf_8 | 9dd3a407793e9ee3814f6c6b28cfc461 | % [Fet, nFeatures] = LoadFet(FileName, BufSize, CluSubset)
%
% A simple matlab function to load a .fet file
function [Fet, nFeatures] = LoadFet(FileName,varargin);
[BufSize, CluSubset] = DefaultArgs(varargin,{inf, []});
Fp = fopen(FileName, 'r');
if Fp==-1
error(['Could not open file ' lsFileName]);
end
nFeat... |
github | buzsakilab/buzcoderough-master | LoadBinary_bw.m | .m | buzcoderough-master/DataToMatlab/Traditional/LoadBinary_bw.m | 7,039 | utf_8 | 472d3197a7a37c80bc66af7e6e93772c | %function [data OrigIndex]= LoadBinary_bw(FileName, Channels, nChannels, varargin)
% Channels - list of channels to load starting from 1
% nChannels - number of channels in a file, will be read from par/xml file
% if present
% intype/outtype - data types in the file and in the matrix to load to
% by default assum... |
github | buzsakilab/buzcoderough-master | LoadXml.m | .m | buzcoderough-master/DataToMatlab/Traditional/LoadXml.m | 4,178 | utf_8 | 9494b859f83dd21e6bc7a53c44343b51 | %function [xml, rxml] = LoadXml(FileBase)
%loads the xml file using xmltools (have to have it in the path)
% rxml returns it's original layout - very messy structure but contains all
% the xml file contents.
% xml - is the ouput structure which is backwards compatible to LoadPar
% output, so you can use it instead ..al... |
github | buzsakilab/buzcoderough-master | LoadClu.m | .m | buzcoderough-master/DataToMatlab/Traditional/LoadClu.m | 315 | utf_8 | 1de4da12f43499b917fab6dd9e116365 | % [Clu, nClusters] = LoadClu(FileName)
%
% A simple matlab function to load a .clu file
function [Clu, nClusters] = LoadClu(FileName)
Fp = fopen(FileName, 'r');
if Fp==-1
error(['Could not open file ' FileName]);
end
nClusters = fscanf(Fp, '%d', 1);
Clu = fscanf(Fp, '%d');
nClusters = max(Clu);
fclose(Fp); |
github | buzsakilab/buzcoderough-master | LoadCluRes.m | .m | buzcoderough-master/DataToMatlab/Traditional/LoadCluRes.m | 2,693 | utf_8 | 65b110ef9b681f53f33478aab4ab1948 | %
% A simple matlab function to load from the .clu and .res files the vectors G and T
% from many electrodes
% Usage: [T,G,Map,Par]=LoadCluRes(FileBase,ElGpsToLoad, ClusToLoad)
% Enter the FileBase without the extension .clu or .res
% ElGpsToLoad - list of electrode groups to load (load them all by default)
% ClusToLo... |
github | buzsakilab/buzcoderough-master | makefir.m | .m | buzcoderough-master/LFP/EventDetection/detect_swr/private/makefir.m | 3,512 | utf_8 | c4bbab8aa52ab94484440ec7ae40319c | % MAKEFIR design an n-th order fir filter using firls
%
% H = MAKEFIR( FREQ, FS, N, BAND, TOL, X, FFUNC )
%
% FREQ - [ highpass lowpass ] frequencies (Hz)
% FS - sampling frequency (Hz); {1000}
%
% optional:
% N - order (number of samples); determined automatically if not specified
% BAND - 'low', 'high', 'ba... |
github | buzsakilab/buzcoderough-master | makegausslpfir.m | .m | buzcoderough-master/LFP/EventDetection/detect_swr/private/makegausslpfir.m | 798 | utf_8 | 2b8c38cdec0eba5f225be2894d9ef425 | % makegausslpfir Gaussian LP filter
%
% win = makegausslpfir( Fc, Fs, s )
%
% Fc corner frequency [Hz]
% Fs sampling frequency [Hz]
% s support [SD], minimum 3, default 4
%
% win fir
%
% see also firfilter
% 02-oct-13 ES
function gwin = makegausslpfir( Fc, Fs, s )
nargs = nargin;
if nargs < 1 || ... |
github | buzsakilab/buzcoderough-master | LoadBinary.m | .m | buzcoderough-master/LFP/EventDetection/detect_swr/private/LoadBinary.m | 8,583 | iso_8859_13 | d44f187d5e7e65d8fd1a79e04137e56f | function data = LoadBinary(filename,varargin)
%LoadBinary - Load data from a multiplexed binary file.
%
% Reading a subset of the data can be done in two different manners: either
% by specifying start time and duration (more intuitive), or by indicating
% the position and size of the subset in terms of number of s... |
github | buzsakilab/buzcoderough-master | xmltools.m | .m | buzcoderough-master/LFP/EventDetection/detect_swr/private/xmltools.m | 11,985 | UNKNOWN | c16d5611b963f255764c129b4e9bbd2d | function z = xmltools( arg, out_file, varargin)
% XMLTOOLS - tools for managing xml data sets
% - if arg is a string : arg is an XML file to convert into MATLAB struct
% - if arg is a variable : it is a MATLAB struct to write into XML, to stdout if out_file is not given
% use :
% z = xmltools('filename.xml')... |
github | buzsakilab/buzcoderough-master | firfilt.m | .m | buzcoderough-master/LFP/EventDetection/detect_swr/private/firfilt.m | 540 | utf_8 | 4ce5747ca79e81cc5cc7d0043d1a1993 | % FIRFILT FIR filtering with zero phase distortion.
%
% matrix columns are filtered;
% output is a column vector / matrix.
% 19-Jul-02 ES
% 27-jan-03 zero phase lag
function Y = firfilt(x,W)
if all(size(W)>=2), error('window must be a vector'), end
if numel(x)==max(size(x)), x=x(:);... |
github | buzsakilab/buzcoderough-master | LoadXml.m | .m | buzcoderough-master/LFP/EventDetection/detect_swr/private/LoadXml.m | 4,171 | utf_8 | 7285a790c80dab912faddf56fa5cacf7 | %function [xml, rxml] = LoadXml(FileBase)
%loads the xml file using xmltools (have to have it in the path)
% rxml returns it's original layout - very messy structure but contains all
% the xml file contents.
% xml - is the ouput structure which is backwards compatible to LoadPar
% output, so you can use it instead ..al... |
github | buzsakilab/buzcoderough-master | v2struct.m | .m | buzcoderough-master/LFP/EventDetection/detect_swr/private/v2struct.m | 15,949 | utf_8 | 20912a1f0ff4635fa430ce427d925be3 | %% v2struct
% v2struct Pack/Unpack Variables to/from a scalar structure.
function varargout = v2struct(varargin)
%% Description
% v2struct has dual functionality in packing & unpacking variables into structures and
% vice versa, according to the syntax and inputs.
%
% Function features:
% * Pack variable... |
github | buzsakilab/buzcoderough-master | Process_DetectLED.m | .m | buzcoderough-master/Video/PositionTracking/DavidT/Process_DetectLED.m | 5,943 | utf_8 | a897489d1427e85b15232ac594640be8 | % Detect red and blue LEDs position in a video file and creates a 'led' file
%
% USAGE
%
% Process_DetectLED(videoFile,<options>)
%
% videoFile path to Basler video file, including the '.avi'
% extension or not
% <options> optional list of property-value pairs (see table be... |
github | buzsakilab/buzcoderough-master | Process_ConvertBasler2Pos.m | .m | buzcoderough-master/Video/PositionTracking/DavidT/Process_ConvertBasler2Pos.m | 4,287 | utf_8 | 2ec026af1006b8a4ebc48d4d367f6a0c | % ConvertBasler2Whl - Convert Basler data to pos file format
%
% USAGE
%
% ConvertBasler2Whl(filebasename,<options>)
%
% filebasename basename of the video file (should be filebasenmae.avi)
% <options> optional list of property-value pairs (see table below)
%
% ======================================... |
github | DmitrySigaev/EVI-master | read_mask_from_a2.m | .m | EVI-master/read_mask_from_a2.m | 4,538 | utf_8 | 5b219f9db1fb949745972dc1dcd37f4e | % BRDF-Albedo Quality 16-Day L3 Global 500m
% The MODerate-resolution Imaging Spectroradiometer (MODIS) BRDF/Albedo Quality
% product (MCD43A2) describes the overall condition of the other BRDF and Albedo
% products. The MCD43A2 product contains 16 days of data at 500-meter spatial
% resolution provided in a level-3 g... |
github | DmitrySigaev/EVI-master | read_myd11_t.m | .m | EVI-master/read_myd11_t.m | 4,406 | utf_8 | 669d02fa51d1abd5410cc67ffd484fad | % The level-3 MODIS global Land Surface Temperature (LST) and Emissivity 8-day
% data are composed from the daily 1-kilometer LST product (MYD11A1) and stored
% on a 1-km Sinusoidal grid as the average values of clear-sky LSTs during an 8-day period.
% MYD11A2 is comprised of daytime and nighttime LSTs, quality assess... |
github | DmitrySigaev/EVI-master | load_ndvi_cmap.m | .m | EVI-master/load_ndvi_cmap.m | 6,216 | utf_8 | f7e55b918a8f2b86dafd0d8f3108c05d | % Color Map array for displaying the NDVI index [0:1] to color index range [r, g, b]
function ndviCmap = load_ndvi_cmap
% colormaps for NDVI
ndviCmap = [1.0,0.0,0.0;0.0823529437184334,0.0823529437184334,0.564705908298492;0.623529434204102,0.623529434204102,0.623529434204102;0.976470589637756,0.976470589637756,0.9764705... |
github | DmitrySigaev/EVI-master | read_mcd12q1.m | .m | EVI-master/read_mcd12q1.m | 1,846 | utf_8 | c1f288172364c4e6ce78fff517ba9c6e | % Land Cover Type Yearly L3 Global 500 m SIN Grid
% MCD12Q1
% Short Name: MCD12Q1
% Sample image of MCD12Q1
% This image represents the 2005 land cover-types for the western
% United States (h08/v05).
% This first SDS layer depicts the IGBP classification.
% The predominant light-brown color represents open shrubla... |
github | DmitrySigaev/EVI-master | read_data_from_a4.m | .m | EVI-master/read_data_from_a4.m | 6,188 | utf_8 | eb12a21ded5cb11f7a9e0df2f544411c | % The MODerate-resolution Imaging Spectroradiometer (MODIS) Reflectance product
% MCD43A4 provides 500-meter reflectance data adjusted using a bidirectional
% reflectance distribution function (BRDF) to model the values as if they were
% taken from nadir view. The MCD43A4 product contains 16 days of data provided
% in ... |
github | liangt/document-image-analysis-master | fchcode.m | .m | document-image-analysis-master/chain_coding/fchcode.m | 8,758 | utf_8 | a833f9d8c6b0cdbb9890705834e013fa | function c = fchcode(b, conn, dir)
%FCHCODE Computes the Freeman chain code of a boundary.
% C = FCHCODE(B) computes the 8-connected Freeman chain code of a
% set of 2-D coordinate pairs contained in B, an np-by-2 array. C
% is a structure with the following fields:
%
% c.fcc = Freeman chain code (... |
github | liangt/document-image-analysis-master | bound2eight.m | .m | document-image-analysis-master/chain_coding/bound2eight.m | 3,063 | utf_8 | cccdbbb793222f89fdccaf06ee7dcd04 | function rc_new = bound2eight(rc)
%BOUND2EIGHT Convert 4-connected boundary to 8-connected boundary.
% RC_NEW = BOUND2EIGHT(RC) converts a four-connected boundary to an
% eight-connected boundary. RC is a P-by-2 matrix, each row of
% which contains the row and column coordinates of a boundary
% pixel. RC... |
github | jonathanmasci/ShapeNet_data_preparation_toolbox-master | extract_patch_operator.m | .m | ShapeNet_data_preparation_toolbox-master/extract_patch_operator.m | 849 | utf_8 | 0b239d62b3b912c1652473b60fbebfe8 | function extract_patch_operator(srcpath, dstpath, patch_params)
if ~exist(dstpath, 'dir')
mkdir(dstpath);
end
fnames = dir(fullfile(srcpath, '*.mat'));
parfor i = 1 : length(fnames)
if exist(fullfile(dstpath, fnames(i).name), 'file')
fprintf('%s already processed, skipping\n', fnames(i).name)
... |
github | jonathanmasci/ShapeNet_data_preparation_toolbox-master | calcVoronoiRegsCircCent.m | .m | ShapeNet_data_preparation_toolbox-master/calcVoronoiRegsCircCent.m | 2,429 | utf_8 | 9fb07789220e2edd328884714bd57a2a | function [VorRegsVertices] = calcVoronoiRegsCircCent(Tri, Vertices)
%% Preps.:
A1 = Vertices(Tri(:,1), :);
A2 = Vertices(Tri(:,2), :);
A3 = Vertices(Tri(:,3), :);
a = A1 - A2; % Nx3
b = A3 - A2; % Nx3
c = A1 - A3; % Nx3
M1 = 1/2*(A2 + A3); % Nx3
M2 = 1/2*(A1 + A3); % Nx3
M3 = 1/2*(A2 + A1); % Nx3
N =... |
github | jonathanmasci/ShapeNet_data_preparation_toolbox-master | extract_geovec.m | .m | ShapeNet_data_preparation_toolbox-master/extract_geovec.m | 613 | utf_8 | b9ab4f4cb80523aaf2bb5b3e7995eb8e | function extract_geovec(srcpath, dstpath, geovec_params)
if ~exist(dstpath, 'dir')
mkdir(dstpath);
end
fnames = dir(fullfile(srcpath, '*.mat'));
parfor i = 1 : length(fnames)
if exist(fullfile(dstpath, fnames(i).name), 'file')
fprintf('%s already processed, skipping\n', fnames(i).name)
continu... |
github | jonathanmasci/ShapeNet_data_preparation_toolbox-master | compute_disk.m | .m | ShapeNet_data_preparation_toolbox-master/compute_disk.m | 3,105 | utf_8 | 2b0cadaf3874aece964e4b7b7d6473f9 | function [in_ray,in_ring,shape,rays_from_point,directions,ds] ...
= compute_disk(shape,start_vertex,dists,flag_dist,varargin)
% default parameters -----------------------------------------------------
% determine rings
scale_max = 80;
scale_min = 2;
nscales = 25;
scales = logspace(log(scale_min)/log(10),log(s... |
github | jonathanmasci/ShapeNet_data_preparation_toolbox-master | calc_geovec.m | .m | ShapeNet_data_preparation_toolbox-master/calc_geovec.m | 771 | utf_8 | 203f9d026e0b2d35fcdd3ab2229d8fee | function [geoVec, basis] = calc_geovec(evecs, evals, geovec_params)
sampleLocs = bsxfun(@minus, evals(:), geovec_params.evalSamples) / geovec_params.dEval;
basis = cubicB_spline(sampleLocs);
geoVec = evecs.^2 * basis;
% L2 normalization
if geovec_params.doNormalize
geoVec = bsxfun(@rdivide, geoVec, sqrt(sum... |
github | jonathanmasci/ShapeNet_data_preparation_toolbox-master | calcLB.m | .m | ShapeNet_data_preparation_toolbox-master/calcLB.m | 4,141 | utf_8 | 8f95630aefa3eb0434b3ac1c65a8b313 | function [M, DiagS] = calcLB(shape)
% The L-B operator matrix is computed by DiagS^-1*M.
% Calculate the weights matrix M
M = calcCotMatrixM1([shape.X, shape.Y, shape.Z], shape.TRIV);
% Calculate the diagonal of matrix S
DiagS = calcVoronoiRegsCircCent(shape.TRIV, [shape.X, shape.Y, shape.Z]);
%%
DiagS = abs( DiagS ... |
github | jonathanmasci/ShapeNet_data_preparation_toolbox-master | wks.m | .m | ShapeNet_data_preparation_toolbox-master/wks.m | 6,508 | utf_8 | 796c18789010fb8290633be83233a881 | % This is the implementation of the Wave Kernel Signature described
% in the paper:
%
% The Wave Kernel Signature: A Quantum Mechanical Approach To Shape Analysis
% M. Aubry, U. Schlickewei, D. Cremers
% In IEEE International Conference on Computer Vision (ICCV) - Workshop on
% Dynamic Shape Capture and ... |
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