plateform stringclasses 1
value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | shayo/Planner-master | fnUpdateGridModel.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnUpdateGridModel.m | 469 | utf_8 | 39eee89a8f1af4e2e4d3eafe0af94cfd |
function fnUpdateGridModel(strctGridModel)
global g_strctModule
if isempty(g_strctModule) || isempty(g_strctModule.m_acAnatVol)
return;
end;
iSelectedGrid = g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber).m_iGridSelected;
g_strctModule.m_acAnatVol{g_strctModul... |
github | shayo/Planner-master | fnAddGridFromStruct.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnAddGridFromStruct.m | 1,615 | utf_8 | b374ee33340221f04219112976fad201 |
function iNewIndex = fnAddGridFromStruct(strctGrid, iSubModelIndex)
global g_strctModule
% Build the model
strctGridParams = feval(strctGrid.m_strctGeneral.m_strDefine);
% Apply sub model adjustments
if ~isempty(iSubModelIndex)
acFieldNames = setdiff(fieldnames(strctGrid.m_acSubModels{iSubModelIndex}),'m_strName'... |
github | shayo/Planner-master | fnGridMIPFuncNeg.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnGridMIPFuncNeg.m | 187 | utf_8 | 29154ecf72039a0cee03462b80de1113 |
function fnGridMIPFuncNeg()
global g_strctModule
g_strctModule.m_strctGUIOptions.m_bMIPFuncNeg = ~g_strctModule.m_strctGUIOptions.m_bMIPFuncNeg;
fnUpdateChamberMIP();
fnUpdateGridAxes(); |
github | shayo/Planner-master | fnAddGridFromModel.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnAddGridFromModel.m | 943 | utf_8 | 7163641bf058965918a601c2ad543861 |
function fnAddGridFromModel(strctGrid)
global g_strctModule
if isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber).m_astrctGrids)
g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber).m_astrctGrids = strctG... |
github | shayo/Planner-master | fnMoveGrid.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnMoveGrid.m | 1,170 | utf_8 | 9992721be5f18defc41d14e4e1cfb41b |
function fnMoveGrid(afDelta)
global g_strctModule
if isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers) || g_strctModule.m_iCurrChamber == 0
return;
end;
iSelectedGrid = get(g_strctModule.m_strctPanel.m_hGridList,'value');
if isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAn... |
github | shayo/Planner-master | fnMyfminsearch.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnMyfminsearch.m | 19,084 | utf_8 | 024f6b1d35584fa59f0295116859da0f | function [x,fval,exitflag,output] = fnMyfminsearch(funfcn,x,options,varargin)
%FMINSEARCH Multidimensional unconstrained nonlinear minimization (Nelder-Mead).
% X = FMINSEARCH(FUN,X0) starts at X0 and attempts to find a local minimizer
% X of the function FUN. FUN is a function handle. FUN accepts input X and
%... |
github | shayo/Planner-master | fnDuplicateGrid.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnDuplicateGrid.m | 1,050 | utf_8 | 30f30589bef69125146cbfe4357f40e5 |
function fnDuplicateGrid()
global g_strctModule
iSelectedGrid = get(g_strctModule.m_strctPanel.m_hGridList,'value');
if isempty(iSelectedGrid) || iSelectedGrid == 0 || isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber).m_astrctGrids)
return;
end;
strctGr... |
github | shayo/Planner-master | fnGridMIPVessels.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnGridMIPVessels.m | 193 | utf_8 | 544d7aaab55d8ae05895f106994d43a1 |
function fnGridMIPVessels()
global g_strctModule
g_strctModule.m_strctGUIOptions.m_bMIPBlood = ~g_strctModule.m_strctGUIOptions.m_bMIPBlood;
fnUpdateChamberMIP();
fnUpdateGridAxes();
|
github | shayo/Planner-master | fnUpdateGridList.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnUpdateGridList.m | 1,577 | utf_8 | 484335f418e702c896ffd42b6c78a06b |
function fnUpdateGridList()
global g_strctModule
if isempty(g_strctModule.m_iCurrChamber)
set(g_strctModule.m_strctPanel.m_hGridList,'string','','value',1);
return;
end;
if g_strctModule.m_iCurrChamber == 0 || isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers)
set(g_strctModu... |
github | shayo/Planner-master | TargetHelper.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/TargetHelper.m | 9,530 | utf_8 | 2eb43421e00c13718de02de97d4ada34 | function varargout = TargetHelper(varargin)
% TARGETHELPER M-file for TargetHelper.fig
% TARGETHELPER, by itself, creates a new TARGETHELPER or raises the existing
% singleton*.
%
% H = TARGETHELPER returns the handle to a new TARGETHELPER or the handle to
% the existing singleton*.
%
% TARGETH... |
github | shayo/Planner-master | GridHelper.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/GridHelper.m | 16,240 | utf_8 | 2b94992066fc53176abedc03aa06ab9b | function varargout = GridHelper(varargin)
% GRIDHELPER M-file for GridHelper.fig
% GRIDHELPER, by itself, creates a new GRIDHELPER or raises the existing
% singleton*.
%
% H = GRIDHELPER returns the handle to a new GRIDHELPER or the handle to
% the existing singleton*.
%
% GRIDHELPER('CALLBACK'... |
github | shayo/Planner-master | fnUpdateGridAxes.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnUpdateGridAxes.m | 2,284 | utf_8 | af76b85ec11bf0664beebf1b6374ba34 |
function fnUpdateGridAxes(bHideAfter)
global g_strctModule g_strctWindows
if ~exist('bHideAfter','var')
bHideAfter = true;
end;
% delete(g_strctModule.m_strctPanel.m_strctGrid.m_ahHoleHandles(ishandle(g_strctModule.m_strctPanel.m_strctGrid.m_ahHoleHandles)));
% g_strctModule.m_strctPanel.m_strctGrid.m_ahHoleHandle... |
github | shayo/Planner-master | fnGridMIPFuncPos.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnGridMIPFuncPos.m | 188 | utf_8 | 51545717b6b973e7bc4af287493a8351 |
function fnGridMIPFuncPos()
global g_strctModule
g_strctModule.m_strctGUIOptions.m_bMIPFuncPos = ~g_strctModule.m_strctGUIOptions.m_bMIPFuncPos;
fnUpdateChamberMIP();
fnUpdateGridAxes(); |
github | shayo/Planner-master | fnRenameGrid.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnRenameGrid.m | 801 | utf_8 | 549b3718787c6e818f51c0af1073aa5c |
function fnRenameGrid()
global g_strctModule
if g_strctModule.m_iCurrAnatVol == 0 || g_strctModule.m_iCurrChamber == 0 || ...
isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber).m_astrctGrids)
return;
end;
iSelectedGrid = get(g_strctModule.m_strc... |
github | shayo/Planner-master | fnRotateGrid.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/fnRotateGrid.m | 604 | utf_8 | 8f6f3776987ab3aa294ab72a7e66eee5 |
function fnRotateGrid()
global g_strctModule
if ~isfield(g_strctModule.m_strctPanel.m_strctGrid,'m_hCurrGridHole') || isempty(g_strctModule.m_acAnatVol)
return;
end;
iSelectedGrid = get(g_strctModule.m_strctPanel.m_hGridList,'value');
if isempty(iSelectedGrid)
return;
end;
fRotationAngle = round(get(g_strctMo... |
github | shayo/Planner-master | fnBuildGridModel_Generic.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/GenericCircular/fnBuildGridModel_Generic.m | 7,118 | utf_8 | 605bc59daf9c171859bc6528ccec0441 | function strctGridModel = fnBuildGridModel_Generic(strctGridParam)
% This function generates a structure that contains the grid model
% It uses various information in strctGridParams to construct the grid
% The output is a structure that must contain
%
%
% strctGridModel.m_strctGridParams - Parameters used to construc... |
github | shayo/Planner-master | GenericCircularGirdGUI.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/GenericCircular/GenericCircularGirdGUI.m | 36,331 | utf_8 | b5ac991b64e7fe0264234ef8d70e66c8 | function varargout = GenericCircularGirdGUI(varargin)
% GENERICCIRCULARGIRDGUI M-file for GenericCircularGirdGUI.fig
% GENERICCIRCULARGIRDGUI, by itself, creates a new GENERICCIRCULARGIRDGUI or raises the existing
% singleton*.
%
% H = GENERICCIRCULARGIRDGUI returns the handle to a new GENERICCIRCULARGIR... |
github | shayo/Planner-master | SolidWorksExportWizard.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/GenericCircular/SolidWorksExportWizard.m | 12,223 | utf_8 | 281cb9449af52c52c5ee4dde0ae8598f | function varargout = SolidWorksExportWizard(varargin)
% SOLIDWORKSEXPORTWIZARD MATLAB code for SolidWorksExportWizard.fig
% SOLIDWORKSEXPORTWIZARD, by itself, creates a new SOLIDWORKSEXPORTWIZARD or raises the existing
% singleton*.
%
% H = SOLIDWORKSEXPORTWIZARD returns the handle to a new SOLIDWORKSEXP... |
github | shayo/Planner-master | fnDefineGridModel_Standard.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/StandardCircular/fnDefineGridModel_Standard.m | 2,035 | utf_8 | 3cade3d490e031c65f4cbc37c246cc7e | function strctGridParam = fnDefineGridModel_Standard()
% Generate a standard grid model (circular).
strctGridParam.m_acParam = {
fnAddParameter('Phi','Grid Tilt Angle (deg)', 'Continuous', [0 50], 0, false), ...
fnAddParameter('Theta','Grid Rotation Angle (deg)', 'Continuous', [-180 180], 0, true), ...
fnAddParameter... |
github | shayo/Planner-master | fnDefineGridModel_DualCircular.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/DualCircular/fnDefineGridModel_DualCircular.m | 3,948 | utf_8 | 93327249eb11a02b31f9928e50523fa7 | function strctGridParam = fnDefineGridModel_DualCircular()
% Generate a standard grid model (circular).
%
% The grid is just a collection of "holes" and their directions in 3D.
% They are represented by several arrays:
% m_afGridHolesX - X position (in mm)
% m_afGridHolesY - Y position (in mm)
% m_apt3fGridHolesNormals... |
github | shayo/Planner-master | fnDraw2DGridModel_DualCircular.m | .m | Planner-master/Modules/ElectrodePlanning/Grids/DualCircular/fnDraw2DGridModel_DualCircular.m | 4,068 | utf_8 | cbe83034fb2bdf23887d2380b7b2bc31 | function ahHolesHandles = fnDraw2DGridModel_DualCircular(strctGridModel, hAxes, hContextMenu)
cla(hAxes);
hold(hAxes,'on');
set(hAxes,'uicontextmenu',hContextMenu);
afAngle = linspace(0,2*pi,20);
afCos = cos(afAngle);
afSin= sin(afAngle);
iNumHoles = length(strctGridModel.m_afGridHolesX);
ahHolesHandles = zeros(1,iN... |
github | shayo/Planner-master | fnKopf1460RightArm_MO.m | .m | Planner-master/Modules/ElectrodePlanning/StereoFrameModels/fnKopf1460RightArm_MO.m | 8,087 | utf_8 | 93c8f72d18548038b7b8a75ad21618a6 | function strctArm = fnKopf1460RightArm_MO()
C1 = 5.39; % Triky to read out...
C3 = 12.15;%11.6457;
INCH_TO_CM = 2.54; %SM this is actuall correct by definition
MM_TO_CM = 1 / 10; %SM mainly to document units
fDistanceBetweenArms = 7 * INCH_TO_CM;
%fDistanceBetweenArms = 7.0079 * INCH_TO_CM;
fHeightOfManipulatorWh... |
github | shayo/Planner-master | ImageSeriesInfoGUI.m | .m | Planner-master/Modules/ElectrodePlanning/ImageSeries/ImageSeriesInfoGUI.m | 9,141 | utf_8 | 073b493b77095049b2e8195887dd1557 | function varargout = ImageSeriesInfoGUI(varargin)
% IMAGESERIESINFOGUI MATLAB code for ImageSeriesInfoGUI.fig
% IMAGESERIESINFOGUI, by itself, creates a new IMAGESERIESINFOGUI or raises the existing
% singleton*.
%
% H = IMAGESERIESINFOGUI returns the handle to a new IMAGESERIESINFOGUI or the handle to
%... |
github | shayo/Planner-master | fnBuildImageSeriesBoundingBox.m | .m | Planner-master/Modules/ElectrodePlanning/ImageSeries/fnBuildImageSeriesBoundingBox.m | 2,526 | utf_8 | 2a0a4d16f7a8891b856e68e09754f161 | function strctMesh = fnBuildImageSeriesBoundingBox()
global g_strctModule
iActiveSeries = get(g_strctModule.m_strctPanel.m_hImageSeriesList,'value');
if isempty(g_strctModule.m_astrctImageSeries(iActiveSeries).m_acImages)
strctMesh = [];
return;
end;
aiFirstImageSize = size(g_strctModule.m_astrctImageSeries(... |
github | shayo/Planner-master | fnInvalidateImageSeries.m | .m | Planner-master/Modules/ElectrodePlanning/ImageSeries/fnInvalidateImageSeries.m | 7,856 | utf_8 | d114d28f158ffc752fdaa3e37e5806bd | function [a3fCrossSectionXY,a3fCrossSectionYZ,a3fCrossSectionXZ]=fnInvalidateImageSeries(a3fCrossSectionXY,a3fCrossSectionYZ,a3fCrossSectionXZ)
global g_strctModule
a4fCrossSectionImages = zeros([size(a3fCrossSectionXY),3]);
a4fCrossSectionImages(:,:,:,1) = a3fCrossSectionXY;
a4fCrossSectionImages(:,:,:,2) = a3fCrossSe... |
github | shayo/Planner-master | fnTargetFindGridAndHole.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnTargetFindGridAndHole.m | 2,502 | utf_8 | 110d269ce3489f7a6e260da30517c54e |
function fnTargetFindGridAndHole()
global g_strctModule
aiCurrTarget = get(g_strctModule.m_strctPanel.m_hTargetList,'value');
iNumTargets=length(aiCurrTarget);
iSelectedGrid = get(g_strctModule.m_strctPanel.m_hGridList,'value');
if iNumTargets == 0 || iSelectedGrid == 0
return;
end;
a2fCRS_To_XYZ = g_strctModul... |
github | shayo/Planner-master | fnUpdateTargetList.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnUpdateTargetList.m | 821 | utf_8 | 3e32099410618a3dd25de29ac9211c5e |
function fnUpdateTargetList()
global g_strctModule
if ~isfield(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol},'m_astrctTargets')
set(g_strctModule.m_strctPanel.m_hTargetList,'String','');
else
strName = '';
iNumTargets = length(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctTarget... |
github | shayo/Planner-master | fnFindNearestHoleToTarget.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnFindNearestHoleToTarget.m | 2,006 | utf_8 | 557e829d12753300754a8597e27c9f34 |
function [fMinDist, iBestHole,fDepthMM,afMinDistToTarget] = fnFindNearestHoleToTarget(a2fChamberM,strctGrid,pt3fTargetPosMM)
iNumHoles = length(strctGrid.m_strctModel.m_afGridHolesX);
afMinDistToTarget = ones(1,iNumHoles)*inf;
afDepth = zeros(1,iNumHoles);
%iNumBloodVessels = size(apt3fBloodVesselsMM,2);
for iHoleIte... |
github | shayo/Planner-master | fnHideShowTargets.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnHideShowTargets.m | 173 | utf_8 | 142e87830db38b170b349f72439c0c27 |
function fnHideShowTargets()
global g_strctModule
g_strctModule.m_strctGUIOptions.m_bShowTargets = ~g_strctModule.m_strctGUIOptions.m_bShowTargets;
fnInvalidate();
return; |
github | shayo/Planner-master | fnTargetFindHole.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnTargetFindHole.m | 2,500 | utf_8 | 9706a59af31f684891d45ad88d5f693e |
function fnTargetFindHole()
global g_strctModule
if isempty(g_strctModule.m_acAnatVol) || g_strctModule.m_iCurrChamber == 0
return;
end;
iNumGrids = length(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber).m_astrctGrids);
if iNumGrids == 0
return;
end;
aiCu... |
github | shayo/Planner-master | fnTargetKeepView.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnTargetKeepView.m | 870 | utf_8 | 127071982ab5e606d04bd7e567937410 |
function fnTargetKeepView()
global g_strctModule
if isempty(g_strctModule.m_acAnatVol) || isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctTargets )
return;
end;
aiCurrTarget = get(g_strctModule.m_strctPanel.m_hTargetList,'value');
if length(aiCurrTarget) > 1
msgbox('This option is avai... |
github | shayo/Planner-master | fnCopyTarget.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnCopyTarget.m | 1,066 | utf_8 | c7dcbd3fe3153cb562f1479b5a4bf18f |
function fnCopyTarget(a,b,iAnatVolTo) %#ok
global g_strctModule
aiCurrTarget = get(g_strctModule.m_strctPanel.m_hTargetList,'value');
astrctTarget = g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctTargets(aiCurrTarget);
for k=1:length(aiCurrTarget)
a2fCRS_To_XYZ = g_strctModule.m_acAnatVo... |
github | shayo/Planner-master | fnRenameTarget.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnRenameTarget.m | 694 | utf_8 | 773a53a926640e648662976c62ec6380 |
function fnRenameTarget()
global g_strctModule
if isempty(g_strctModule.m_iCurrAnatVol)
return;
end;
iSelectedTarget = get(g_strctModule.m_strctPanel.m_hTargetList,'value');
if length(iSelectedTarget) > 1
msgbox('This option is available for only one target');
return;
end;
if iSelectedTarget > 0
... |
github | shayo/Planner-master | fnSelectTarget.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnSelectTarget.m | 1,515 | utf_8 | 1dce0eb53b36c66a8147f00ed5b162fb |
function fnSelectTarget()
global g_strctModule
iSelectedTarget = get(g_strctModule.m_strctPanel.m_hTargetList,'value');
if length(iSelectedTarget) > 1 || isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctTargets)
return;
end;
if ~isempty(iSelectedTarget) && iSelectedTarget > 0 && isfield(g_st... |
github | shayo/Planner-master | fnSelectMoveTarget.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnSelectMoveTarget.m | 280 | utf_8 | 82e604dc44e6e90257a7fe9798f7ea7d |
function fnSelectMoveTarget()
global g_strctModule
aiCurrTarget = get(g_strctModule.m_strctPanel.m_hTargetList,'value');
if length(aiCurrTarget) > 1
msgbox('This option is available only for one target');
return;
end;
fnChangeMouseMode('MoveTarget');
return; |
github | shayo/Planner-master | fnRemoveTarget.m | .m | Planner-master/Modules/ElectrodePlanning/Targets/fnRemoveTarget.m | 736 | utf_8 | b63fe8d9ee0acddd51f91b5e24037b75 |
function fnRemoveTarget()
global g_strctModule
if g_strctModule.m_iCurrAnatVol == 0 || isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctTargets)
return;
end;
strAnswer = questdlg({'Are you sure you want to remove target(s)?'},'Warning','Yes','No','No');
if strcmpi(strAnswer,'yes')
aiCur... |
github | shayo/Planner-master | absoluteOrientationQuaternion.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/absoluteOrientationQuaternion.m | 3,784 | utf_8 | 654695944a69f198dac3925283aa9c1b | % [s R T error] = absoluteOrientationQuaternion( A, B, doScale)
%
% Computes the orientation and position (and optionally the uniform scale
% factor) for the transformation between two corresponding 3D point sets Ai
% and Bi such as they are related by:
%
% Bi = sR*Ai+T
%
% Implementation is based on the paper by... |
github | shayo/Planner-master | fnUpdateChamberList.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnUpdateChamberList.m | 909 | utf_8 | 0735f76084e14cd2bebd57d2173f8e70 |
function fnUpdateChamberList()
global g_strctModule
iNumChambers = length(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers);
if iNumChambers == 0
set(g_strctModule.m_strctPanel.m_hChamberList,'String','','value',1);
return;
end;
if g_strctModule.m_iCurrChamber <= 0 || g_strctModule.m_i... |
github | shayo/Planner-master | fnUpdateChamberMIP.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnUpdateChamberMIP.m | 5,663 | utf_8 | afc9134a0ab602f2fbcf12e55d70781e |
function fnUpdateChamberMIP()
return;
%
% global g_strctModule
% if g_strctModule.m_iCurrChamber == 0 || isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers)
% return
% end
% if isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iC... |
github | shayo/Planner-master | fnCreateRectChamberMesh.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnCreateRectChamberMesh.m | 2,441 | utf_8 | d8a47ef47a377aa81295ca5b3bbe194e | function astrctMesh= fnCreateRectChamberMesh(fWidthMM, fHeightMM,fDepthMM,afColor)
% creates a bunch of triangles that correspond to a box (without the top
% and bottom faces, and with an inside edge to indicate the direction...
%
% fWidthMM = 20;
% fHeightMM = 40;
% fDepthMM = 0;
% afColor = [1 0 1];
% add the inne... |
github | shayo/Planner-master | RotateChamberByFixedAmount.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/RotateChamberByFixedAmount.m | 389 | utf_8 | 198b77f1a11258d3f8f6cea62aed8028 |
function RotateChamberByFixedAmount()
global g_strctModule
prompt={'Rotate by X deg:'};
name='Chamber Rotation';
numlines=1;
defaultanswer={'0'};
answer=inputdlg(prompt,name,numlines,defaultanswer);
if ~isempty(answer)
% rotation will be X/100 * pi, so we need to pass
fnRotateChamber(g_strctModule.m_strctLa... |
github | shayo/Planner-master | fnLongChamber.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnLongChamber.m | 272 | utf_8 | a2b0f34651f8c848f2384dea5e26f84d |
function fnLongChamber()
global g_strctModule
g_strctModule.m_strctGUIOptions.m_bLongChamber = ~g_strctModule.m_strctGUIOptions.m_bLongChamber;
fnInvalidate(1);
% profile clear
% profile on
% for k=1:10
% fnInvalidate(1);
% end
% profile off
% profile viewer
return;
|
github | shayo/Planner-master | fnAddChamberSinglePointAux.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnAddChamberSinglePointAux.m | 882 | utf_8 | 3e9fc5b0fdd60e123e4070eaaadc013e |
function fnAddChamberSinglePointAux(strctMouseOp)
global g_strctModule
[pt3fPosIn3DSpace, pt3fPosInStereoSpace, pt3fVoxelCoordinate, strctCrossSection]=fnGet3DCoord(strctMouseOp); %#ok
a2fM = eye(4);
a2fM(1:3,1:3) = strctCrossSection.m_a2fM(1:3,1:3);
a2fM(1:3,4) =pt3fPosIn3DSpace(1:3);
switch strctMouseOp.m_hAxes
... |
github | shayo/Planner-master | fnAlignToChamber.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnAlignToChamber.m | 1,207 | utf_8 | 66547845d8af8ab227b61391fc0446da |
function fnAlignToChamber()
global g_strctModule
if g_strctModule.m_iCurrChamber == 0
return;
end;
a2fCRS_To_XYZ = g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_a2fReg*g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_a2fM;
a2fChamberT = a2fCRS_To_XYZ*g_strctModule.m_acAnatVol{g_strctModu... |
github | shayo/Planner-master | fnfnShowHideChamber.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnfnShowHideChamber.m | 636 | utf_8 | 3c1dc3ab7d38f4ee747ad84da26e6f1f |
function fnfnShowHideChamber()
global g_strctModule
if g_strctModule.m_iCurrChamber == 0
return;
end;
g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber).m_bVisible = ~g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrCh... |
github | shayo/Planner-master | fnGenerateControllersForVirtualArm.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnGenerateControllersForVirtualArm.m | 2,686 | utf_8 | 983495f6ce624b65b78c046ed0a2cf80 | function [ahLinkFixed,ahLinkSlider, ahLinkEdit,iNextY] = fnGenerateControllersForVirtualArm(strctPanel,strctVirtualArm,yStartY)
iNumLinks = length(strctVirtualArm);
ahLinkFixed = zeros(1,iNumLinks);
ahLinkSlider = zeros(1,iNumLinks);
ahLinkEdit = zeros(1,iNumLinks);
if (ismac)
virt_arm_field_height = 24;
else
... |
github | shayo/Planner-master | fnAddChamberNormalToPlane.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnAddChamberNormalToPlane.m | 206 | utf_8 | be9223361b354517517789f531af7c9a |
function fnAddChamberNormalToPlane()
global g_strctModule
fnChangeMouseMode('AddSingleClickObject', 'Add Chamber (normal-to-plane)');
g_strctModule.m_hClickCallback = @fnAddChamberSinglePointAux;
return;
|
github | shayo/Planner-master | fnCopyChamber.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnCopyChamber.m | 1,036 | utf_8 | 29157a17f607b1da770b0feecf4cb69b |
function fnCopyChamber(a,b,iAnatVolTo) %#ok
global g_strctModule
if g_strctModule.m_iCurrChamber == 0
return;
end;
strctChamber = g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber);
% we can't just copy the chamber because it is represented in voxel
% coordinates... |
github | shayo/Planner-master | fnAddChamberInPlane.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnAddChamberInPlane.m | 192 | utf_8 | f3bbe19692d24f86197786c17cd04652 |
function fnAddChamberInPlane()
global g_strctModule
fnChangeMouseMode('AddTwoClickObject', 'Add Chamber (in-plane)');
g_strctModule.m_hClickCallback = @fnAddChamberUsingTwoPoints;
return; |
github | shayo/Planner-master | fnSetChamberRotateAxis.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnSetChamberRotateAxis.m | 83 | utf_8 | 72641dabe5f2342c3d9a9740ba06908d |
function fnSetChamberRotateAxis()
fnChangeMouseMode('ChamberRotateAxis');
return;
|
github | shayo/Planner-master | fnRenameChamber.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnRenameChamber.m | 482 | utf_8 | 9b67eed058a3376334713d4eb2e95257 |
function fnRenameChamber()
global g_strctModule
if g_strctModule.m_iCurrChamber==0
return;
end
answer=inputdlg({'New Chamber Name:'},'Change Volume Name',1,...
{g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber).m_strName});
if isempty(answer)
return;
e... |
github | shayo/Planner-master | fnHideShowShowHideChamber.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnHideShowShowHideChamber.m | 181 | utf_8 | 80e711cb731d6ae2d4406a11a1db6c4b |
function fnHideShowShowHideChamber()
global g_strctModule
g_strctModule.m_strctGUIOptions.m_bShowChamber = ~g_strctModule.m_strctGUIOptions.m_bShowChamber;
fnInvalidate();
return; |
github | shayo/Planner-master | fnSelectChamberAux.m | .m | Planner-master/Modules/ElectrodePlanning/Chamber/fnSelectChamberAux.m | 857 | utf_8 | 12e2aedeef694b19b01101b053df7423 |
function fnSelectChamberAux(iChamber)
global g_strctModule
g_strctModule.m_iCurrChamber = iChamber;
if iChamber > 0
g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_iLastSelectedChamber = iChamber;
set(g_strctModule.m_strctPanel.m_hChamberList,'value',iChamber);
set(g_strctModule.m_strctPanel.m_h... |
github | shayo/Planner-master | fnMeasureDistTopGrid.m | .m | Planner-master/Modules/ElectrodePlanning/Ruler/fnMeasureDistTopGrid.m | 149 | utf_8 | 3dadde8bafed30b426e3da18537da86a |
function fnMeasureDistTopGrid()
global g_strctModule
fnChangeMouseMode('MeasureDist');
g_strctModule.m_strDistMode = 'PointToGridTop';
return;
|
github | shayo/Planner-master | fnDrawRuler.m | .m | Planner-master/Modules/ElectrodePlanning/Ruler/fnDrawRuler.m | 2,776 | utf_8 | 3263d041357e2768e27dec80e88b56cf |
function ahHandles= fnDrawRuler(strctObject)
global g_strctModule g_strctWindows
ahHandles = [];
[strctCrossSection,hAxes] = fnAxesNameToCrossSection(strctObject.m_strAxes);
% We should only draw the ruler if the ruler is ON the correct cross
% section plane ....
a2fCRS_To_XYZ = g_strctModule.m_acAnatVol{g_strct... |
github | shayo/Planner-master | fnIntersectsRuler.m | .m | Planner-master/Modules/ElectrodePlanning/Ruler/fnIntersectsRuler.m | 1,410 | utf_8 | 438b42589f39dfcf7fc03e8079b0bc07 |
function [bIntersects, strWhat] = fnIntersectsRuler(strctObject, strctMouseOp)
global g_strctModule
bIntersects = false;
strWhat = [];
[strctCrossSection,strName] = fnAxesToCrossSection(strctMouseOp.m_hAxes);
if ~strcmp( strName, strctObject.m_strAxes)
return;
end;
% Check whether it is close to the end ... |
github | shayo/Planner-master | fnCreateRulerObject.m | .m | Planner-master/Modules/ElectrodePlanning/Ruler/fnCreateRulerObject.m | 2,242 | utf_8 | 8f228eb460c3ea2a888501ea8332583c |
function strctObject = fnCreateRulerObject()
global g_strctModule
[strctCrossSection,strName] = fnAxesToCrossSection(g_strctModule.m_strctLastMouseDown.m_hAxes);
if isempty(strctCrossSection)
return;
end;
strctObject.m_strAxes = strName;
strctObject.m_strctCrossSection = strctCrossSection;
% Default position of... |
github | shayo/Planner-master | fnModifyRulerPosition.m | .m | Planner-master/Modules/ElectrodePlanning/Ruler/fnModifyRulerPosition.m | 1,560 | utf_8 | 63dd5feaeef53d71404ed72c0e0b6e23 |
function strctObject = fnModifyRulerPosition(strctObject, strWhat, strctMouseOp)
global g_strctModule
afDiffPix = strctMouseOp.m_pt2fPos-g_strctModule.m_strctPrevMouseOp.m_pt2fPos;
a2fCRS_To_XYZ = g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_a2fReg*g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.... |
github | shayo/Planner-master | fnPrintGrid.m | .m | Planner-master/Modules/ElectrodePlanning/Export_Print/fnPrintGrid.m | 694 | utf_8 | eafb3ae70a0cc5edf75a5918e95af5e6 |
function fnPrintGrid()
global g_strctModule
if g_strctModule.m_iCurrChamber == 0
return;
end;
hFig = figure; %#ok
clf;
hAxes = gca;
iSelectedGrid = g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_astrctChambers(g_strctModule.m_iCurrChamber).m_iGridSelected;
strctGrid = g_strctModule.m_acAnatVol{g_strctM... |
github | shayo/Planner-master | fnPrintSlices.m | .m | Planner-master/Modules/ElectrodePlanning/Export_Print/fnPrintSlices.m | 3,706 | utf_8 | b9a6002d83b4b20369fb24986b8d19ff |
function fnPrintSlices()
global g_strctModule g_strctWindows
set(g_strctWindows.m_hFigure,'Renderer','zbuffer');
set(g_strctModule.m_strctPanel.hMouseModeText,'visible','off');
set(g_strctModule.m_strctPanel.m_strctXZ.m_ahTextHandles,'visible','off');
set(g_strctModule.m_strctPanel.m_strctXY.m_ahTextHandles,'visible'... |
github | shayo/Planner-master | fnInvalidateDerivedSurfaceList.m | .m | Planner-master/Modules/ElectrodePlanning/FreeSurfer_Surfaces/fnInvalidateDerivedSurfaceList.m | 778 | utf_8 | 54f9d6a2e15b3ff0028ed8c7e9045741 |
function fnInvalidateDerivedSurfaceList()
global g_strctModule
iSelectedParentSurface = get(g_strctModule.m_strctPanel.m_hSurfaceList,'value');
if isempty(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol}.m_acFreeSurferSurfaces)
set(g_strctModule.m_strctPanel.m_hDerivedSurfaceList,'string',[]);
return;
e... |
github | shayo/Planner-master | fnBuildRectangularChamberModel.m | .m | Planner-master/Modules/ElectrodePlanning/ChamberModels/fnBuildRectangularChamberModel.m | 1,105 | utf_8 | ec182bf98396b96587551e7e95474623 | function strctModel = fnBuildRectangularChamberModel(fChamberWidthMM)
% A chamber must have only two strctures that describe the 3D geometry
% One is "short" (normal size) and one is "long" to see its projection in
% the volume.
%
% Future versions may automatically do this projection so only the short
% version will ... |
github | shayo/Planner-master | fnBuildCristChamberModel.m | .m | Planner-master/Modules/ElectrodePlanning/ChamberModels/fnBuildCristChamberModel.m | 3,393 | utf_8 | f81ff124cd9f2256fdd1ec01cf700ecb | function strctModel = fnBuildCristChamberModel(fChamberAngle)
% A chamber must have only two strctures that describe the 3D geometry
% One is "short" (normal size) and one is "long" to see its projection in
% the volume.
%
% Future versions may automatically do this projection so only the short
% version will be neede... |
github | shayo/Planner-master | fnHideShowPlanesFunctional.m | .m | Planner-master/Modules/ElectrodePlanning/Functionals/fnHideShowPlanesFunctional.m | 192 | utf_8 | 9398bf87749fd834ffdcbfd6f1651979 |
function fnHideShowPlanesFunctional()
global g_strctModule
g_strctModule.m_strctGUIOptions.m_bShowFunctional = ~g_strctModule.m_strctGUIOptions.m_bShowFunctional;
fnInvalidate(true);
return; |
github | shayo/Planner-master | fnUpdateOverlayTransform.m | .m | Planner-master/Modules/ElectrodePlanning/Functionals/fnUpdateOverlayTransform.m | 1,815 | utf_8 | 4d6eae876aed110e5555e20cd310eaf9 |
function fnUpdateOverlayTransform()
global g_strctModule
Tmp = get(g_strctModule.m_strctPanel.m_strctOverlayAxes.m_hAxes,'CurrentPoint');
afRange = axis(g_strctModule.m_strctPanel.m_strctOverlayAxes.m_hAxes);
pt2fCurrPoint = Tmp([2,3]);
pt2fCurrPoint(1) = min(afRange(2), max(afRange(1), pt2fCurrPoint(1)));
pt2fCurrPo... |
github | shayo/Planner-master | fnPrintInfoFunc.m | .m | Planner-master/Modules/ElectrodePlanning/Functionals/fnPrintInfoFunc.m | 227 | utf_8 | f7ace533c49b0d66a8aa2477c16653a7 |
function fnPrintInfoFunc()
global g_strctModule
if ~isempty(g_strctModule.m_acFuncVol) && g_strctModule.m_iCurrFuncVol >0
h=msgbox(g_strctModule.m_acFuncVol{g_strctModule.m_iCurrFuncVol}.m_strFileName);
waitfor(h);
end |
github | shayo/Planner-master | fnApplyFuncInvTrans.m | .m | Planner-master/Modules/ElectrodePlanning/Functionals/fnApplyFuncInvTrans.m | 520 | utf_8 | 7176fca60c948b5879a7d8a1b455f704 |
function fnApplyFuncInvTrans()
global g_strctModule
if g_strctModule.m_iCurrFuncVol == 0
return;
end;
[strFile, strPath] = uigetfile([g_strctModule.m_strDefaultFilesFolder,'*.reg'],'Select transformation file');
if strFile(1) == 0
return;
end;
a2fTrans = fnReadRegisteration([strPath, strFile]);
g_strctModule.... |
github | shayo/Planner-master | fnExportFuncRegMatrix.m | .m | Planner-master/Modules/ElectrodePlanning/Functionals/fnExportFuncRegMatrix.m | 637 | utf_8 | f02caad3fe5699aa143a7ac86b1b3e31 |
function fnExportFuncRegMatrix()
global g_strctModule
if g_strctModule.m_iCurrFuncVol == 0
return;
end;
[strFile, strPath] = uiputfile([g_strctModule.m_strDefaultFilesFolder,'*.reg'],'Select transformation file');
if strFile(1) == 0
return;
end;
strFilename =fullfile(strPath,strFile);
strVolType =... |
github | shayo/Planner-master | fnRemoveFunc.m | .m | Planner-master/Modules/ElectrodePlanning/Functionals/fnRemoveFunc.m | 486 | utf_8 | e2bd1868323d74cfcf213d537e8238bf |
function fnRemoveFunc()
global g_strctModule
if length(g_strctModule.m_acFuncVol) <= 1
msgbox('You cannot remove this volume');
return;
end;
strAnswer = questdlg('Are you sure you want to remove this volume?','Warning','Yes','No','No');
if strcmpi(strAnswer,'yes')
g_strctModule.m_acFuncVol(g_strctModule.... |
github | shayo/Planner-master | fnUpdateFunctionalsList.m | .m | Planner-master/Modules/ElectrodePlanning/Functionals/fnUpdateFunctionalsList.m | 321 | utf_8 | 56d3b4789d2cb14a31a363323b093714 |
function fnUpdateFunctionalsList()
global g_strctModule
strList = '';
for iFuncIter=1:length(g_strctModule.m_acFuncVol)
strList = [strList,'|',g_strctModule.m_acFuncVol{iFuncIter}.m_strName]; %#ok
end;
set(g_strctModule.m_strctPanel.m_hFuncList,'String',strList(2:end),'value',g_strctModule.m_iCurrFuncVol);
return;... |
github | shayo/Planner-master | fnShowHideTimeCourse.m | .m | Planner-master/Modules/ElectrodePlanning/Functionals/fnShowHideTimeCourse.m | 715 | utf_8 | 5a586acbf3c6c3a6632bf91e4260ab08 |
function fnShowHideTimeCourse()
global g_strctModule
if g_strctModule.m_strctGUIOptions.m_bShowTimeCourse
g_strctModule.m_strctGUIOptions.m_bShowTimeCourse = false;
set(g_strctModule.m_strctPanel.m_strct3D.m_hPanel,'visible','on')
set(g_strctModule.m_strctPanel.m_strctTimeCourse.m_hPanel,'visible','off')
... |
github | shayo/Planner-master | fnLoadFuncVol.m | .m | Planner-master/Modules/ElectrodePlanning/Functionals/fnLoadFuncVol.m | 2,153 | utf_8 | 5d32f490da0c41374532614c424eb233 |
function fnLoadFuncVol()
global g_strctModule
[strFuncFile, strPath] = uigetfile([g_strctModule.m_strDefaultFilesFolder,'*.bhdr;*.nii'],'Select Functional Volume');
if strFuncFile(1) == 0
return;
end;
strInputVolfile = [strPath,strFuncFile];
%
% [strFile, strPath] = uigetfile([g_strctModule.m_strDefaultFiles... |
github | shayo/Planner-master | fnROIChange.m | .m | Planner-master/Modules/ElectrodePlanning/ROI/fnROIChange.m | 4,405 | utf_8 | 3d48efc04b88f1aa7c52aa4bfaca5072 | function fnROIChange(strctMouseOp,bAdd, b2D)
global g_strctModule
if isempty(strctMouseOp.m_hAxes)
return;
end;
strctCrossSection =fnAxesToCrossSection(strctMouseOp.m_hAxes);
if isempty(strctCrossSection)
return;
end;
if b2D
fnROIChange2D(strctCrossSection,strctMouseOp,bAdd)
else
fnROIChange3D(st... |
github | shayo/Planner-master | fnEraseVoxels.m | .m | Planner-master/Modules/ElectrodePlanning/ROI/fnEraseVoxels.m | 3,179 | utf_8 | 06fe86eef2b7b1ead90005c97b40dcdd | function fnEraseVoxels(strctMouseOp, b2D)
global g_strctModule
strctCrossSection =fnAxesToCrossSection(strctMouseOp.m_hAxes);
if isempty(strctCrossSection)
return;
end;
if b2D
fnEraseVoxels2D(strctCrossSection,strctMouseOp);
else
fnEraseVoxels3D(strctCrossSection,strctMouseOp);
end
fnInvalidate(1);
ret... |
github | shayo/Planner-master | BloodVesselHelper.m | .m | Planner-master/Modules/ElectrodePlanning/SurfaceHelper/BloodVesselHelper.m | 16,642 | utf_8 | 128553c1d591c9634710e34c8115b2bf | function varargout = BloodVesselHelper(varargin)
% BLOODVESSELHELPER M-file for BloodVesselHelper.fig
% BLOODVESSELHELPER, by itself, creates a new BLOODVESSELHELPER or raises the existing
% singleton*.
%
% H = BLOODVESSELHELPER returns the handle to a new BLOODVESSELHELPER or the handle to
% the ex... |
github | shayo/Planner-master | Hessian3D.m | .m | Planner-master/Modules/ElectrodePlanning/SurfaceHelper/Hessian3D.m | 1,868 | utf_8 | 944f5f355ba7a20d1fa54cc6e17737a3 | function [Dxx, Dyy, Dzz, Dxy, Dxz, Dyz] = Hessian3D(Volume,Sigma)
% This function Hessian3D filters the image with an Gaussian kernel
% followed by calculation of 2nd order gradients, which aprroximates the
% 2nd order derivatives of the image.
%
% [Dxx, Dyy, Dzz, Dxy, Dxz, Dyz] = Hessian3D(I,Sigma)
%
% inputs,
% ... |
github | shayo/Planner-master | SurfaceHelper.m | .m | Planner-master/Modules/ElectrodePlanning/SurfaceHelper/SurfaceHelper.m | 22,834 | utf_8 | 526ed41d78e82d60138ff2c0c264063b | function varargout = SurfaceHelper(varargin)
% SURFACEHELPER M-file for SurfaceHelper.fig
% SURFACEHELPER, by itself, creates a new SURFACEHELPER or raises the existing
% singleton*.
%
% H = SURFACEHELPER returns the handle to a new SURFACEHELPER or the handle to
% the existing singleton*.
%
% ... |
github | shayo/Planner-master | fnHideShowPlanes2D.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnHideShowPlanes2D.m | 1,108 | utf_8 | 02ebc5e18b1812dd19500812945a9c12 |
function fnHideShowPlanes2D()
global g_strctModule
g_strctModule.m_strctGUIOptions.m_bShow2DPlanes = ~g_strctModule.m_strctGUIOptions.m_bShow2DPlanes;
if g_strctModule.m_strctGUIOptions.m_bShow2DPlanes
set(g_strctModule.m_strctPanel.m_strctXY.m_hLineYZ,'visible','on');
set(g_strctModule.m_strctPanel.m_strctXY... |
github | shayo/Planner-master | fnCallback.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnCallback.m | 137 | utf_8 | 33b9f49219e4f0f58859b4e6e57f6add |
function fnCallback(a,b,strEvent,varargin) %#ok
global g_strctModule
feval(g_strctModule.m_hCallbackFunc,strEvent,varargin{:});
return;
|
github | shayo/Planner-master | fnSetAllWindowsMode.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnSetAllWindowsMode.m | 360 | utf_8 | 75f143f24cf1da79737bccc6b974d369 |
function fnSetAllWindowsMode(strMode)
global g_strctModule
set(g_strctModule.m_strctPanel.m_strctXY.m_hPanel,'visible',strMode);
set(g_strctModule.m_strctPanel.m_strctYZ.m_hPanel,'visible',strMode);
set(g_strctModule.m_strctPanel.m_strctXZ.m_hPanel,'visible',strMode);
set(g_strctModule.m_strctPanel.m_strct... |
github | shayo/Planner-master | fnIntersectAxis.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnIntersectAxis.m | 4,840 | utf_8 | 4210f17eb4ac8a7e24ff56a94feb426a |
function [hAxes,bCloseToCenter, afPenDir,hAxesLine] = fnIntersectAxis(strctMouseOp)
global g_strctModule g_strctWindows
hAxes = [];
hAxesLine = [];
fThreshold = 2;
iWindowSize = g_strctModule.m_strctPanel.m_strctXY.m_aiPos(end);
fCenterDist = 0.6*(iWindowSize/2); %#ok
bCloseToCenter = false; %#ok
afPenDir = [];
bClose... |
github | shayo/Planner-master | cylinder2P.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/cylinder2P.m | 2,223 | utf_8 | ac7fd8dba2e4a89a99014e478c5886dc | % CYLINDER: A function to draw a N-sided cylinder based on the
% generator curve in the vector R.
%
% Usage: [X, Y, Z] = cylinder(R, N)
%
% Arguments: R - The vector of radii used to define the radius of
% the different segments of the cylinder.
% N - The number of po... |
github | shayo/Planner-master | fnRotatePlaneExactAuxComputeRotationAngle.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnRotatePlaneExactAuxComputeRotationAngle.m | 1,481 | utf_8 | 914968aec047d6acdd5c40b760f6895a |
function fRotationAngle=fnRotatePlaneExactAuxComputeRotationAngle(pt3fPosIn3DSpace,strctCrossSection1,strctCrossSection2,strctCrossSection3, hAxes)
[pt2fP1, pt2fP2] = fnCrossSectionIntersection(strctCrossSection1,strctCrossSection2);
pt3fLine1=fnGet3DCoordAux(pt2fP1, hAxes);
pt3fLine2=fnGet3DCoordAux(pt2fP2... |
github | shayo/Planner-master | fnCorrectOrientation.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnCorrectOrientation.m | 334 | utf_8 | e64d8522af95913d34873a7fe9285c8c |
function fnCorrectOrientation()
global g_strctModule
if g_strctModule.m_iCurrAnatVol == 0
return;
end;
X = OrientationWizard(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol});
if ~isempty(X)
g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol} = X;
fnSetDefaultCrossSections();
fnInvalidate()... |
github | shayo/Planner-master | fnSetFocusNoZoom.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnSetFocusNoZoom.m | 1,571 | utf_8 | 80f12631764c11b5881e42285794914c |
function fnSetFocusNoZoom(strctMouseOp)
global g_strctModule
hAxes = strctMouseOp.m_hAxes;
if isempty(hAxes)
return;
end;
switch hAxes
case g_strctModule.m_strctPanel.m_strctXY.m_hAxes
% Transform the clicked point to 3D coordinates
pt2fPosMM = fnCrossSection_Image_To_MM(g_strctModule.m_strc... |
github | shayo/Planner-master | fnRotatePlane.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnRotatePlane.m | 1,678 | utf_8 | 647993ed414f99a50b7f328cbb882468 |
function fnRotatePlane(hAxes, fDiff)
global g_strctModule
switch hAxes
case g_strctModule.m_strctPanel.m_strctXY.m_hLineYZ % bottom left, red
g_strctModule.m_strctCrossSectionYZ = fnRotateCrossSectionAux(...
g_strctModule.m_strctCrossSectionYZ, g_strctModule.m_strctCrossSectionXZ, -fDiff/1... |
github | shayo/Planner-master | fnShowTimeCourse.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnShowTimeCourse.m | 2,744 | utf_8 | 81389090176ae87a97321037aa029e31 |
function fnShowTimeCourse()
global g_strctModule
if ~isempty(g_strctModule.m_acFuncVol) && g_strctModule.m_iCurrFuncVol > 0 && isfield(g_strctModule.m_acFuncVol{g_strctModule.m_iCurrFuncVol},'m_a4fTimeCourse')
a2fXYZ_To_CRS_Func = inv(g_strctModule.m_acFuncVol{g_strctModule.m_iCurrFuncVol}.m_a2fM) * inv(g_strctM... |
github | shayo/Planner-master | fnRenameFunc.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnRenameFunc.m | 398 | utf_8 | 21ca8ed07615785e081260f14210d84e |
function fnRenameFunc()
global g_strctModule
if g_strctModule.m_iCurrFuncVol == 0
return;
end;
answer=inputdlg({'New Functional Volume Name:'},'Change Volume Name',1,{g_strctModule.m_acFuncVol{g_strctModule.m_iCurrFuncVol}.m_strName});
if isempty(answer)
return;
end;
g_strctModule.m_acFuncVol{g_strctModule.m... |
github | shayo/Planner-master | fnSelectNewChamberInPlanningMode.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnSelectNewChamberInPlanningMode.m | 268 | utf_8 | e87970e57d395c2a967455a522ed22b0 |
function fnSelectNewChamberInPlanningMode()
global g_strctModule
% if strctAnatVol.m_a2fRegToStereoTatic
% strctPanel.m_hChambersList
% end
iSelectedChamber = get(g_strctModule.m_strctPanel.m_hChambersList,'value');
fnSelectChamberAux(iSelectedChamber);
return;
|
github | shayo/Planner-master | fnSetFullScreen.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnSetFullScreen.m | 112 | utf_8 | 7f5c0b0e3bba900f5370768b9fe98f0d |
function fnSetFullScreen()
global g_strctModule
fnZoomAxes(g_strctModule.m_strctMouseOpMenu.m_hAxes);
return;
|
github | shayo/Planner-master | fnMoveLightSource.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnMoveLightSource.m | 107 | utf_8 | e4c5f1d8d359aada3de99d04fea0f27a |
function fnMoveLightSource()
global g_strctModule
g_strctModule.m_strMouse3DMode = 'MoveLights';
return;
|
github | shayo/Planner-master | fnAbsoluteOrientation.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnAbsoluteOrientation.m | 3,860 | utf_8 | 94d9eaac3c80b4a10383bffdd1c59dff | % [s R T error] = absoluteOrientationQuaternion( A, B, doScale)
%
% Computes the orientation and position (and optionally the uniform scale
% factor) for the transformation between two corresponding 3D point sets Ai
% and Bi such as they are related by:
%
% Bi = sR*Ai+T
%
% Implementation is based on the paper by... |
github | shayo/Planner-master | fnRotateAxesInPlane.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnRotateAxesInPlane.m | 758 | utf_8 | 47965e4ba50a52885340cecc7041f545 |
function fnRotateAxesInPlane(hAxes,afDelta)
global g_strctModule
if isempty(hAxes)
return;
end;
switch hAxes
case g_strctModule.m_strctPanel.m_strctXY.m_hAxes
g_strctModule.m_strctCrossSectionXY = ...
fnRotateInPlaneCrossSectionAux(g_strctModule.m_strctCrossSectionXY, afDelta(1)/100*pi);
... |
github | shayo/Planner-master | fnSaveSession.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnSaveSession.m | 544 | utf_8 | 4ddc4eb89a7b24ddd45c798517b39ffa |
function fnSaveSession()
global g_strctModule %#ok
[strFile,strPath]=uiputfile('PlannerSession.mat');
if strFile(1) == 0
return;
end;
if exist([strPath,strFile],'file') && fnFileSize([strPath,strFile]) > 0
% Generate a backup (only if the current file is not empty...)
fprintf('Generating a backup file bef... |
github | shayo/Planner-master | fnZoomAxes.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnZoomAxes.m | 588 | utf_8 | 975bc3798d0d92a79685dbfa9e79c28e |
function fnZoomAxes(hAxes)
global g_strctModule
if ~isempty(hAxes)
switch hAxes
case g_strctModule.m_strctPanel.m_strctXY.m_hAxes
fnZoomAxesAux('m_strctXY');
case g_strctModule.m_strctPanel.m_strctXZ.m_hAxes
fnZoomAxesAux('m_strctXZ');
case g_strctModule.m_strctPanel.m_strctYZ.m_hAxes
... |
github | shayo/Planner-master | fnShiftPlaneExact.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnShiftPlaneExact.m | 1,565 | utf_8 | 09e2ed08326e7f8be8aa7d490bb09d5a |
function fnShiftPlaneExact(strctLastMouseDown, strctMouseOp)
global g_strctModule
% Transform MouseOp into a 3D Point.
pt3fPosIn3DSpace=fnGet3DCoord(strctMouseOp);
switch strctLastMouseDown.m_hAxesSelected
case g_strctModule.m_strctPanel.m_strctXY.m_hAxes
fDist = fnPointPlaneDist(g_strctModule.m_strctCr... |
github | shayo/Planner-master | fnGetDistanceToLine.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnGetDistanceToLine.m | 454 | utf_8 | 6465f09dfa519a66e4a1542631d358ab |
function [fDist, fDistFromCenter,afPenDir] = fnGetDistanceToLine(pt2fPos, hAxes)
afX = get(hAxes,'xdata');
afY = get(hAxes,'ydata');
fDist = abs(((afX(2)-afX(1)) * (afY(1)-pt2fPos(2)) - (afX(1)-pt2fPos(1))*(afY(2)-afY(1))) / sqrt( (afX(2)-afX(1))^2 + (afY(2)-afY(1))^2));
fDistFromCenter = sqrt( (mean(afX) - pt2fPos(1)... |
github | shayo/Planner-master | fnDrawControlableObject.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnDrawControlableObject.m | 844 | utf_8 | 1f52236c1ca8e517006351d1e50ffc48 |
function fnDrawControlableObject()
global g_strctModule
% Delete old contours.
if isfield(g_strctModule,'m_ahControllableObjects')
delete(g_strctModule.m_ahControllableObjects(ishandle(g_strctModule.m_ahControllableObjects)));
end;
ahRulerHandles = [];
if isfield(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrA... |
github | shayo/Planner-master | fnSetNewPanLevel.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnSetNewPanLevel.m | 1,303 | utf_8 | 423eed163523e58596f40125df57893c |
function fnSetNewPanLevel(hAxes, afDelta)
global g_strctModule
if ~isempty(hAxes)
switch hAxes
case g_strctModule.m_strctPanel.m_strctXY.m_hAxes
pt3fCurrPos = g_strctModule.m_strctCrossSectionXY.m_a2fM(1:3,4);
pt3fNewPos = pt3fCurrPos + ...
-afDelta(1) * g_strctModule.m_strctCrossSect... |
github | shayo/Planner-master | fnIntersectsControllableObject.m | .m | Planner-master/Modules/ElectrodePlanning/Core and GUI/fnIntersectsControllableObject.m | 855 | utf_8 | e33aa5db21b64ea8a7163f526bd89a6d |
function [bIntersects, strctObject, strWhat,iObjectIndex] = fnIntersectsControllableObject(strctMouseOp)
global g_strctModule
bIntersects = false;
strctObject = [];
strWhat = [];
iObjectIndex = [];
if isfield(g_strctModule.m_acAnatVol{g_strctModule.m_iCurrAnatVol},'m_acControllableObjects')
iNumObjects = leng... |
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