plateform stringclasses 1
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value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | isetbio/isetbio-master | ieDeleteValidationFile.m | .m | isetbio-master/validation/ieDeleteValidationFile.m | 1,847 | utf_8 | 585b879a6fe83bdb81f1849004223543 | function ieDeleteValidationFile
% ieDeleteValidationFile
%
%% Utility to remove one validation ground truth data set (both fast and full)
% Which project
thisProject = 'isetbio';
validationFileToBeDeleted = selectValidationFile(thisProject);
list = rdtListLocalArtifacts(...
getpref(thisProject, 'remoteDataToolbo... |
github | isetbio/isetbio-master | v_stockman2xyz.m | .m | isetbio-master/validation/scripts/color/v_stockman2xyz.m | 19,628 | utf_8 | dae163775b580bad56296bb94fd02446 | function varargout = v_stockman2xyz(varargin)
%
% Test that colorTransformMatrix does the right thing for Stockman-Sharpe to XYZ and back.
%
% 4/16/15 dhb Added a few more comparisons. Not really needed. These
% were part of trying to track down an issue that in the end was related to
% ... |
github | isetbio/isetbio-master | v_Colorimetry.m | .m | isetbio-master/validation/scripts/color/v_Colorimetry.m | 14,392 | utf_8 | 99cf1c3fce710cc172f27f28536385ed | function varargout = v_Colorimetry(varargin)
%
% Validate ISETBIO-based colorimetric computations by comparing to PTB-based colorimetric computations.
%
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Function implementing the isetbio validation code
function ValidationF... |
github | isetbio/isetbio-master | v_sceneFromRGB.m | .m | isetbio-master/validation/scripts/scene/v_sceneFromRGB.m | 4,512 | utf_8 | 554646ed9439ac6a196cc8434e5f5f9a | function varargout = v_sceneFromRGB(varargin)
% Test creating a scene from image rgb data using the sceneFromFile
% function
%
% The sceneFromFile logic is this:
%
% 1) the rgb data and the spectral power distributions (spds) of the
% display color primaries are used to calculate the spectral radiance of
% the disp... |
github | isetbio/isetbio-master | v_sceneReIllumination.m | .m | isetbio-master/validation/scripts/scene/v_sceneReIllumination.m | 7,608 | utf_8 | ec65e2374750f87ce39e75a7a2233a18 | function varargout = v_sceneReIllumination(varargin)
%
% Validate changes in scene illuminant.
%
% Start with a Macbeth image illuminated under a D65 illuminant.
% Then re-illuminate using a flusorescent illuminant of equal luminance.
%
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin... |
github | isetbio/isetbio-master | v_sceneExamples.m | .m | isetbio-master/validation/scripts/scene/v_sceneExamples.m | 3,795 | utf_8 | 1dbb6d0f555f1a51dcb82b5c39d77ec3 | function varargout = v_sceneExamples(varargin)
%
% Illustrate and test the types of synthetic scenes.
%
% These synthetic scenes are useful for testing different features of the
% optics and sensors.
%
% Copyright ImagEval Consultants, LLC, 2003.
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, ... |
github | isetbio/isetbio-master | v_sceneoiSpatialResample.m | .m | isetbio-master/validation/scripts/scene/v_sceneoiSpatialResample.m | 6,754 | utf_8 | 4200abbe0885c15210572bd376b47466 | function varargout = v_sceneoiSpatialResample(varargin)
%
% Check spatial resample of a scene and an oi
%
% This script validates the spatial resampling of the scene and oi photon data.
%
% BW, NPC Copyright ISETBIO Team 2016
%
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
func... |
github | isetbio/isetbio-master | v_sceneHCCompress.m | .m | isetbio-master/validation/scripts/scene/v_sceneHCCompress.m | 2,446 | utf_8 | 6e0b417c12243bd34f6ccd3a53626981 | function varargout = v_sceneHCCompress(varargin)
%
% Validate hyperspectral scene data and compression
%
% Uses linear model compression.
%
% Copyright ImagEval Consultants, LLC, 2012
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Here is the actual code
function Validation... |
github | isetbio/isetbio-master | v_wvfComputeConePSF.m | .m | isetbio-master/validation/scripts/wavefront/v_wvfComputeConePSF.m | 17,572 | utf_8 | c80c3a50b1781cd4fb0bc5528679fd82 | function varargout = v_wvfComputeConePSF(varargin)
%
% Test the routines that compute L, M, and S cone PSFs from Zernike coefficients.
%
% Replicates figures from
% Autrusseau et al., 2011, Vision Research, 51, 2282-2294.
%
% The diffraction limited calcs seem to match up with their
% Figure 2 pretty well, the MTFs a... |
github | isetbio/isetbio-master | v_wvfSpatialSampling.m | .m | isetbio-master/validation/scripts/wavefront/v_wvfSpatialSampling.m | 3,196 | utf_8 | 6fd2ce96df8585159459daf001f54f3a | function varargout = v_wvfSpatialSampling(varargin)
%
% Check consistency of wavefront calcs across different spatial sampling parameters.
%
% If this is working, all of the points should fall on the lines in the graph.
%
% There is an issue of normalization that we need to think about. Normalize
% psf's so that they i... |
github | isetbio/isetbio-master | v_wvfZernikePolynomials.m | .m | isetbio-master/validation/scripts/wavefront/v_wvfZernikePolynomials.m | 3,619 | utf_8 | ce221dbe91eee501ecac405e7b2694e5 | function varargout = v_wvfZernkePolynomials(varargin)
%
% Test that single Zernike coeffs produce correct wavefront aberrations.
%
% Make plots of the wavefront aberrations we get for single Zernike coefficients.
% These ought to match up with standard pictures of the Zernike pyramid.
%
% The problem is that pictures e... |
github | isetbio/isetbio-master | v_wvfDiffractionPSF.m | .m | isetbio-master/validation/scripts/wavefront/v_wvfDiffractionPSF.m | 10,232 | utf_8 | 4395b8ac05c81652fb74f77053e8bb59 | function varargout = v_wvfDiffractionPSF(varargin)
%
% Checks that diffraction-limited PSFs are correct.
%
% Compares monochromatic PSFs computed from Zernike coefficients in this
% toolbox with those in PTB and ISET. The curves/points in each lineplot
% figure should overlay.
%
% At the end, we calculate a slice thro... |
github | isetbio/isetbio-master | v_oi.m | .m | isetbio-master/validation/scripts/optics/v_oi.m | 1,816 | utf_8 | 89e8e70b17ff6c5d03dff858a3c2775d | function varargout = v_oi(varargin)
%
% Test optical image creating functions
%
% Implicitly tests the opticsCreate functions, as well.
%
% Copyright Imageval LLC, 2009
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Function implementing the isetbio validation code
func... |
github | isetbio/isetbio-master | v_oiTransmittance.m | .m | isetbio-master/validation/scripts/optics/v_oiTransmittance.m | 1,202 | utf_8 | 5717b6512a5f8edf8104dc41464c18fb | function varargout = v_oiTransmittance(varargin)
%
% Validate some of the optical image transmittance calculations
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Function implementing the isetbio validation code
function ValidationFunction(runTimeParams)
ieInit;
%% Human optic... |
github | isetbio/isetbio-master | v_oiSequence.m | .m | isetbio-master/validation/scripts/outersegment/v_oiSequence.m | 2,761 | utf_8 | 45024a07578e4e8d124a2595e4e4c9fb | function varargout = v_oiSequence(varargin)
%
% Validate simulations using the oiSequence method
%
% * Create a small oiSequence
% * Check the coneMosaic
% * Adjust the time base of the oiSequence and repeat
%
% The purpose is to show that we can vary the oiSequence time base and the
% cMosaic integration time and... |
github | isetbio/isetbio-master | v_osTimeStep.m | .m | isetbio-master/validation/scripts/outersegment/v_osTimeStep.m | 25,533 | utf_8 | 2d9f52620ab1f1c7ae51040090218070 | function varargout = v_osTimeStep(varargin)
%
% Demonstrate simulations using three different timebases,
% For stimuli (based on stimulus refresh rate),
% For absorptions and eye movements (based on coneMosaic.integrationTime)
% For outer segment current computations (based on os.timeStep)
%
% Mainly, we ca... |
github | isetbio/isetbio-master | v_osEMData.m | .m | isetbio-master/validation/scripts/outersegment/v_osEMData.m | 9,374 | utf_8 | 73f5fb0a45bf5cd96fad0c0329eabeeb | function varargout = v_osEMData(varargin)
%
% Check os models against neural data (simulating eye movements)
%
% This script tests the linear and biophysical outer segment models of photon
% isomerizations to photocurrent transduction in the cone outer segments.
% The simulation is compared with a recording sesssion th... |
github | isetbio/isetbio-master | v_osStepFlash.m | .m | isetbio-master/validation/scripts/outersegment/v_osStepFlash.m | 13,282 | utf_8 | b9d6c18f57e6aaa47e7fd55213b1c2e5 | function varargout = v_osStepFlash(varargin)
%
% Validate the os models for very brief flashes on different pedestals.
%
% This script tests the linear and biophysical outer segment models of
% photon isomerizations to photocurrent transduction that occurs in the
% cone outer segments. It computes responses for brief... |
github | isetbio/isetbio-master | v_osLinearFilters.m | .m | isetbio-master/validation/scripts/outersegment/v_osLinearFilters.m | 7,818 | utf_8 | 2e19145e531760332acdef78f01f83c3 | function varargout = v_osLinearFilters(varargin)
%
% Compute linearFilters at different os.timeSteps and luminance levels
%
% NPC, ISETBIO TEAM, 2016
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Function implementing the isetbio validation code
function ValidationFunction(... |
github | isetbio/isetbio-master | v_osIncDec.m | .m | isetbio-master/validation/scripts/outersegment/v_osIncDec.m | 13,525 | utf_8 | 13f59a57e59714f88796397456b08257 | function varargout = v_osIncDec(varargin)
%
% Validate the os models for light increment and decrement stimuli
%
% This script tests the linear and biophysical outer segment models of
% photon isomerizations to photocurrent transduction that occurs in the
% cone outer segments. This is for steps (1.5 sec), both incre... |
github | isetbio/isetbio-master | v_osStep.m | .m | isetbio-master/validation/scripts/outersegment/v_osStep.m | 8,514 | utf_8 | 41937c86d6571a7aeded9bc6670f427c | function varargout = v_osStep(varargin)
%
% Validate the cone outer segment models against neural data (step stimuli)
%
% This script tests the linear and biophysical outer segment models of
% photon isomerizations to photocurrent transduction that occurs in the
% cone outer segments, for recordings of response to li... |
github | isetbio/isetbio-master | v_numericalPrecision.m | .m | isetbio-master/validation/scripts/codedevscripts/v_numericalPrecision.m | 3,826 | utf_8 | 748a96a29d830e75225b28821a4f6fdf | function varargout = v_numericalPrecision(varargin)
%
% Script assessing the effects of rounding at different numerical precisions.
%
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Function implementing the isetbio validation code
function ValidationFunction(runTimeParams)
... |
github | isetbio/isetbio-master | v_vcSESSION.m | .m | isetbio-master/validation/scripts/codedevscripts/v_vcSESSION.m | 692 | utf_8 | 0ead6abb5b3603c00be6e0166514cb93 | function varargout = v_vcSESSION(varargin)
%
% Tests the ieAddObject function
%
% Copyright Imageval LLC, 2018
%{
v_vcSESSION;
%}
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Function implementing the isetbio validation code
function ValidationFunction(runTimeParams)
%% Init... |
github | isetbio/isetbio-master | v_skeleton.m | .m | isetbio-master/validation/scripts/codedevscripts/v_skeleton.m | 3,336 | utf_8 | 93af93f57377e57f82a4ebaa22aa4167 | function varargout = v_skeleton(varargin)
%
% Skeleton script containing the minimally required code. Copy and add your ISETBIO validation code.
%
% [THE ONE LINE COMMENT ABOVE WILL GET AUTOPUBLISHED AS THE DESCRIPTION OF
% THIS SCRIPT.]
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin)... |
github | isetbio/isetbio-master | v_fundamentalValidationFailure.m | .m | isetbio-master/validation/scripts/codedevscripts/v_fundamentalValidationFailure.m | 876 | utf_8 | 239a2c7fe388b49fa2f0ddb99b5eb150 | function varargout = v_fundamentalValidationFailure(varargin)
%
% Example validation script that demonstrates usage of the fundemantal failure feature.
%
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Function implementing the isetbio validation code
function ValidationFunc... |
github | isetbio/isetbio-master | v_runTimeError.m | .m | isetbio-master/validation/scripts/codedevscripts/v_runTimeError.m | 638 | utf_8 | 15f15dad67c18134685d6c1713639ffa | function varargout = v_runTimeError(varargin)
%
% Example validation script that simulates runtime exemption.
%
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Function implementing the isetbio validation code
function ValidationFunction(runTimeParams)
error('Simul... |
github | isetbio/isetbio-master | v_rgcPillowModelGainCheck.m | .m | isetbio-master/validation/scripts/rgc/v_rgcPillowModelGainCheck.m | 1,690 | utf_8 | b4d63657c1ecff7179003c3fb66d5ad3 | function varargout = v_rgcPillowModelGainCheck(varargin)
%v_rgcPillowModelGainCheck Validate features of the Pillow RGC model.
%
% Description:
% Validate features of the Pillow RGC model. Currently checks gain.
% TRG asserts that this should always be one, independent of sampling
% rate. Currently, this is not... |
github | isetbio/isetbio-master | v_IrradianceIsomerizations.m | .m | isetbio-master/validation/scripts/radiometry/v_IrradianceIsomerizations.m | 18,936 | utf_8 | 9b6759048f90258e1d5c86b9ad1127fc | function varargout = v_IrradianceIsomerizations(varargin)
%
% Validate ISETBIO-based irradiance/isomerization computations by comparing to PTB-based irradiance/isomerization computations.
%
% See also: v_Cones
%
% Minor issues:
%
% 1) The irradiance calculations agree to about 1%, once the difference in
% how isetbio a... |
github | isetbio/isetbio-master | v_eyeMovementsPhysio.m | .m | isetbio-master/validation/scripts/eyemovements/v_eyeMovementsPhysio.m | 30,885 | utf_8 | 6096b98ebb592d2bc565384f7a72323b | function varargout = v_eyeMovementsPhysio(varargin)
% Deprecated
%
% This tests the HJ eye movement model, not the new fixational eye movement
% model.
disp('*** v_eyeMovementsPhysio needs to be re-written for fixational EM ***');
return;
end
%{
% Parameters to examine.
params = struct(...
'mosaicType', 'hexRegDef... |
github | isetbio/isetbio-master | v_DisplayColorConversion.m | .m | isetbio-master/validation/scripts/display/v_DisplayColorConversion.m | 14,703 | utf_8 | 4220a3d7c571761872e4478a23d0be6b | function varargout = v_DisplayColorConversion(varargin)
%
% Validate display calibration color conversion against PTB. Oddly enough, this also does some checking of LUT inversion.
%
% ISETBIO and PTB agree well on this calculation.
%
% See also v_IrradianceIsomerizations, v_DisplayLUTInversion
varargout = UnitTest.ru... |
github | isetbio/isetbio-master | v_PTBcalStructToIsetbioDisplayObjectAndBack.m | .m | isetbio-master/validation/scripts/display/v_PTBcalStructToIsetbioDisplayObjectAndBack.m | 4,142 | utf_8 | 155041dd36e828b477e4fffeb03bc02c | function varargout = v_PTBcalStructToIsetbioDisplayObjectAndBack(varargin)
%
% Validate conversion of PTBcalStruct to isetbio display object and back.
% This compares the PTB reconstruction after conversion into isetbio and
% back with the originally read PTB cal stucture.
%
% See also v_IrradianceIsomerizations, v_Dis... |
github | isetbio/isetbio-master | v_DisplayLUTinversion.m | .m | isetbio-master/validation/scripts/display/v_DisplayLUTinversion.m | 8,889 | utf_8 | b408ad37dd2390039934e7b79c84f5d1 | function varargout = v_DisplayLUTinversion(varargin)
%
% Validate display calibration lut inversion against PTB.
%
% The two don't give exactly the same results, as the inversion methods
% are not identical. In particular, the PTB routines, the way we are calling
% them here, fit the gamma function with a power functi... |
github | isetbio/isetbio-master | v_OTFandPupilSize.m | .m | isetbio-master/validation/scripts/human/v_OTFandPupilSize.m | 14,363 | utf_8 | 00207f47aa199276242ba4999e767f3d | function varargout = v_OTFandPupilSize(varargin)
%
% Validate the ISETBIO's OTF as a function of pupil size by comparing it to the Watson (2013) OTF model.
% "A formula for the mean human optical modulation transfer function as a function of pupil size".
% http://www.journalofvision.org/content/13/6/18.short?related-u... |
github | isetbio/isetbio-master | v_HumanRetinalIlluminance580nm.m | .m | isetbio-master/validation/scripts/human/v_HumanRetinalIlluminance580nm.m | 4,044 | utf_8 | 825f7f3be49fd9777070a4b1bd232829 | function varargout = v_HumanRetinalIlluminance580nm(varargin)
%
% Validate photon flux measurements with assertions from Ed Pugh.
%
% Ed says that a photon flux of 10^15 photons/cm^2/sec at 580 nm
% corresponds to a retinal illuminance of 590,000 photopic trolands. He
% wrote a document (Pugh_Summary_for_FFB.pdf) asse... |
github | isetbio/isetbio-master | v_Cones.m | .m | isetbio-master/validation/scripts/cones/v_Cones.m | 7,976 | utf_8 | 2c3a619a1552ca5637444d9d40305d14 | function varargout = v_Cones(varargin)
%
% Test cone, lens and macular function calls. Compare against PTB answers.
%
% See also v_IrradianceIsomerizations.
%
% Issues:
%
% 1) It might be nice to test some sets as well as gets, and show how to
% take a customized set of parameters from PTB and get these parameters to
... |
github | isetbio/isetbio-master | v_cmCurrentImpulse.m | .m | isetbio-master/validation/scripts/cones/v_cmCurrentImpulse.m | 2,460 | utf_8 | 3da7e44d5277393d73ec95d9aa9c5a18 | function varargout = v_cmCurrentImpulse(varargin)
%
% Cone mosaic photocurrent impulse response calculations.
%
% We will systematically change parameters and see that the results are stable.
%
% BW, ISETBIO Team Copyright 2016
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Fun... |
github | isetbio/isetbio-master | v_cmosaic.m | .m | isetbio-master/validation/scripts/cones/v_cmosaic.m | 1,690 | utf_8 | 66eca728bf49b4f3183d074eb8cd8759 | function varargout = v_cmosaic(varargin)
%
% Simple rectangular cone mosaic calculation.
%
% We will systematically change parameters and see that the results are stable.
%
% BW, ISETBIO Team Copyright 2016
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
%% Function implementing t... |
github | isetbio/isetbio-master | v_sceneFromRGB_debug2.m | .m | isetbio-master/validation/scripts/debug/v_sceneFromRGB_debug2.m | 4,383 | utf_8 | b3f085208fb75dbf84a3518073231748 | function varargout = v_sceneFromRGB(varargin)
% Test how isetbio creates a scene from an rgb data using sceneFromFile
%
% Function sceneFromFile uses 1) the rgb data and the spectral power
% distributions (spds) of the display color primaries to calculate the
% spectral radiance of the displayed image, and 2) the spect... |
github | isetbio/isetbio-master | v_sceneFromRGB_debug1.m | .m | isetbio-master/validation/scripts/debug/v_sceneFromRGB_debug1.m | 4,383 | utf_8 | 0107d7bb9b9abe30e277579d3978a81c | function varargout = v_sceneFromRGB(varargin)
% Test how isetbio creates a scene from an rgb data using sceneFromFile
%
% Function sceneFromFile uses 1) the rgb data and the spectral power
% distributions (spds) of the display color primaries to calculate the
% spectral radiance of the displayed image, and 2) the spect... |
github | isetbio/isetbio-master | v_sceneFromRGB_debug0.m | .m | isetbio-master/validation/scripts/debug/v_sceneFromRGB_debug0.m | 4,383 | utf_8 | 8d6db1153d8d769c63381637fb601b0f | function varargout = v_sceneFromRGB(varargin)
% Test how isetbio creates a scene from an rgb data using sceneFromFile
%
% Function sceneFromFile uses 1) the rgb data and the spectral power
% distributions (spds) of the display color primaries to calculate the
% spectral radiance of the displayed image, and 2) the spect... |
github | isetbio/isetbio-master | v_sceneFromRGB_debug3.m | .m | isetbio-master/validation/scripts/debug/v_sceneFromRGB_debug3.m | 4,383 | utf_8 | a0b819001115f4ad6ca28f0324346505 | function varargout = v_sceneFromRGB(varargin)
% Test how isetbio creates a scene from an rgb data using sceneFromFile
%
% Function sceneFromFile uses 1) the rgb data and the spectral power
% distributions (spds) of the display color primaries to calculate the
% spectral radiance of the displayed image, and 2) the spect... |
github | isetbio/isetbio-master | v_sceneFromRGB_debug4.m | .m | isetbio-master/validation/scripts/debug/v_sceneFromRGB_debug4.m | 4,383 | utf_8 | 906f392c53c1ba8785bb291e67f08a33 | function varargout = v_sceneFromRGB(varargin)
% Test how isetbio creates a scene from an rgb data using sceneFromFile
%
% Function sceneFromFile uses 1) the rgb data and the spectral power
% distributions (spds) of the display color primaries to calculate the
% spectral radiance of the displayed image, and 2) the spect... |
github | isetbio/isetbio-master | v_sceneFromRGB_debug5.m | .m | isetbio-master/validation/scripts/debug/v_sceneFromRGB_debug5.m | 4,383 | utf_8 | 218d0538290178c8da12392b4867c7ae | function varargout = v_sceneFromRGB(varargin)
% Test how isetbio creates a scene from an rgb data using sceneFromFile
%
% Function sceneFromFile uses 1) the rgb data and the spectral power
% distributions (spds) of the display color primaries to calculate the
% spectral radiance of the displayed image, and 2) the spect... |
github | isetbio/isetbio-master | v_rdt.m | .m | isetbio-master/validation/scripts/xNeedChecking/remoteData/v_rdt.m | 619 | utf_8 | 6433d5c278ec47ae3b742749c99acb8c | function varargout = v_rdt(varargin)
%
% Validate ISETBIO-based colorimetric computations by comparing to PTB-based colorimetric computations.
%
varargout = UnitTest.runValidationRun(@ValidationFunction, nargout, varargin);
end
function ValidationFunction(runTimeParams)
%% Test remote data toolbox access
rd = R... |
github | isetbio/isetbio-master | testOTF.m | .m | isetbio-master/validation/scripts/xNeedChecking/opticalImage/testOTF.m | 5,476 | utf_8 | 650026fda9dea6b9bd7b2dcec0cd4123 | function testOTF
s_initISET;
h1 = figure(1);
set(h1, 'Position', [100 100 650 760]);
clf;
h2 = figure(2);
set(h2, 'Position', [200 200 650 760]);
clf;
% Pupil diameters to test
pupilDiametersInMillimeters = (2:0.5:6.5);
%pupilDiametersInMillimeters = (4.0:0.5:6);
... |
github | isetbio/isetbio-master | ieWebGet.m | .m | isetbio-master/isetcore/ieWebGet.m | 11,144 | utf_8 | 770330012c1a7d6780e3110a7791fa53 | function localFile = ieWebGet(varargin)
%% Download a resource from the Stanford web site
%
% Synopsis
% localFile = ieWebGet(varargin)
%
% Brief description
% Download an ISET zip or mat-file file from the web. The type of file
% and the remote file name define how to get the file.
%
% Inputs
% 'browse','list',... |
github | isetbio/isetbio-master | lms2lmsDichromat.m | .m | isetbio-master/isetcore/color/transforms/lms2lmsDichromat.m | 10,799 | utf_8 | 5bc0e710f46ca8d806371d6034b74d64 | function LMS = lms2lmsDichromat(LMS, cbType, method, varargin)
% Interpolate missing cone values for colorblind in cone color space (LMS)
%
% Syntax:
% LMS = lms2lmsDichromat(LMS, [cbType], [method], [varargin])
%
% Description:
% Interpolate missing cone values for colorblind in cone color space
%
% The estima... |
github | isetbio/isetbio-master | synchronizeISETBIOWithRepository.m | .m | isetbio-master/external/synchronizeISETBIOWithRepository.m | 7,989 | utf_8 | 68d9091507b30a2d743b793e7f0bf0bf | % Function to synchronize external functions in isetbio with their origins.
%
% Examples are provided in the code.
%
% 11/20/2014 npc Wrote it.
% 4/27/2015 npc Modification to support synchronization of any repository with isetbio, not just PTB
%
% Examples:
%{
% ETTBSkip
% Running these can get you ... |
github | isetbio/isetbio-master | EllipsoidTest.m | .m | isetbio-master/external/brainardlabtoolbox/Ellipsoids/EllipsoidTest.m | 2,995 | utf_8 | 91304ef3813277362f544aa0fe00f48d | function EllipsoidTest
% EllipsoidTest
%
% Test the ellipsoid code
%
% 6/27/16 dhb Wrote it.
%% Clear
clear; close all;
%% Generate points on unit sphere for simulating data
nTheta = 10;
nPhi = 10;
xSphere = UnitSphereGenerate(nTheta,nPhi);
figure; clf; hold on
plot3(xSphere(1,:),xSphere(2,:),xSphere(3,:),'ro','Mar... |
github | isetbio/isetbio-master | EllipsoidFit.m | .m | isetbio-master/external/brainardlabtoolbox/Ellipsoids/EllipsoidFit.m | 4,379 | utf_8 | 1db5e663c482f8244f76315b63a5d814 | function [A,Ainv,Q,ellParamsFit] = EllipsoidFit(x,ellParams0,fitCenterOffset,isXYEllipse)
% Fit an ellipsoid (or ellipse) to data
%
% Syntax
% [A,Ainv,Q,ellParamsFit] = EllipsoidFit(x,[ellParams0],[offset])
%
% Description:
% Find the ellipsoid that goes through a set of passed points in the
% columns of ma... |
github | isetbio/isetbio-master | FitEllipseQ.m | .m | isetbio-master/external/brainardlabtoolbox/Ellipsoids/FitEllipseQ.m | 11,494 | utf_8 | a20800ccd085b7e114cde511d7724df9 | function [ellParams,AConstraint,Ainv,Q,fitErr] = FitEllipseQ(theData,varargin)
% Fit an ellipse to points
%
% Syntax:
% [ellParams,AConstraint,Ainv,Q] = FitEllipseQ(theData)
%
% Description:
% Fit an ellipse to points. The fit error minimized is the RMSE
% of radial length difference in the directions of each... |
github | isetbio/isetbio-master | pdftops.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/pdftops.m | 3,186 | utf_8 | 6d98bc96a6c451245ad6400431e8bee1 | function varargout = pdftops(cmd)
%PDFTOPS Calls a local pdftops executable with the input command
%
% Example:
% [status result] = pdftops(cmd)
%
% Attempts to locate a pdftops executable, finally asking the user to
% specify the directory pdftops was installed into. The resulting path is
% stored for futur... |
github | isetbio/isetbio-master | crop_borders.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/crop_borders.m | 1,750 | utf_8 | 0893357fafdc2893c4fb22a136f6898a | %CROP_BORDERS Crop the borders of an image or stack of images
%
% [B, v] = crop_borders(A, bcol, [padding])
%
%IN:
% A - HxWxCxN stack of images.
% bcol - Cx1 background colour vector.
% padding - scalar indicating how many pixels padding to have. Default: 0.
%
%OUT:
% B - JxKxCxN cropped stack of i... |
github | isetbio/isetbio-master | isolate_axes.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/isolate_axes.m | 3,787 | utf_8 | 453f95309059c464d4388c2e6c56d249 | %ISOLATE_AXES Isolate the specified axes in a figure on their own
%
% Examples:
% fh = isolate_axes(ah)
% fh = isolate_axes(ah, vis)
%
% This function will create a new figure containing the axes/uipanels
% specified, and also their associated legends and colorbars. The objects
% specified must all be in th... |
github | isetbio/isetbio-master | im2gif.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/im2gif.m | 6,234 | utf_8 | 8ee74d7d94e524410788276aa41dd5f1 | %IM2GIF Convert a multiframe image to an animated GIF file
%
% Examples:
% im2gif infile
% im2gif infile outfile
% im2gif(A, outfile)
% im2gif(..., '-nocrop')
% im2gif(..., '-nodither')
% im2gif(..., '-ncolors', n)
% im2gif(..., '-loops', n)
% im2gif(..., '-delay', n)
%
% This function c... |
github | isetbio/isetbio-master | read_write_entire_textfile.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/read_write_entire_textfile.m | 961 | utf_8 | 775aa1f538c76516c7fb406a4f129320 | %READ_WRITE_ENTIRE_TEXTFILE Read or write a whole text file to/from memory
%
% Read or write an entire text file to/from memory, without leaving the
% file open if an error occurs.
%
% Reading:
% fstrm = read_write_entire_textfile(fname)
% Writing:
% read_write_entire_textfile(fname, fstrm)
%
%IN:
% fn... |
github | isetbio/isetbio-master | pdf2eps.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/pdf2eps.m | 1,522 | utf_8 | 4c8f0603619234278ed413670d24bdb6 | %PDF2EPS Convert a pdf file to eps format using pdftops
%
% Examples:
% pdf2eps source dest
%
% This function converts a pdf file to eps format.
%
% This function requires that you have pdftops, from the Xpdf suite of
% functions, installed on your system. This can be downloaded from:
% http://www.foolabs.c... |
github | isetbio/isetbio-master | print2array.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/print2array.m | 6,471 | utf_8 | d3a6a535e6e7cd87b093870d949003b6 | %PRINT2ARRAY Exports a figure to an image array
%
% Examples:
% A = print2array
% A = print2array(figure_handle)
% A = print2array(figure_handle, resolution)
% A = print2array(figure_handle, resolution, renderer)
% [A bcol] = print2array(...)
%
% This function outputs a bitmap image of the given fig... |
github | isetbio/isetbio-master | append_pdfs.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/append_pdfs.m | 2,068 | utf_8 | 1e97e9c2cadd89753e3402105347bedb | %APPEND_PDFS Appends/concatenates multiple PDF files
%
% Example:
% append_pdfs(output, input1, input2, ...)
% append_pdfs(output, input_list{:})
% append_pdfs test.pdf temp1.pdf temp2.pdf
%
% This function appends multiple PDF files to an existing PDF file, or
% concatenates them into a PDF file if the o... |
github | isetbio/isetbio-master | using_hg2.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/using_hg2.m | 549 | utf_8 | cd37c33c7e218b4d40ccf8d0738fefb8 | %USING_HG2 Determine if the HG2 graphics pipeline is used
%
% tf = using_hg2(fig)
%
%IN:
% fig - handle to the figure in question.
%
%OUT:
% tf - boolean indicating whether the HG2 graphics pipeline is being used
% (true) or not (false).
%
% 12/19/15 dhb Modified for 2016b, can't use graphicsv... |
github | isetbio/isetbio-master | eps2pdf.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/eps2pdf.m | 5,143 | utf_8 | cd07d7984e39ef75ff3df49305770c4e | %EPS2PDF Convert an eps file to pdf format using ghostscript
%
% Examples:
% eps2pdf source dest
% eps2pdf(source, dest, crop)
% eps2pdf(source, dest, crop, append)
% eps2pdf(source, dest, crop, append, gray)
% eps2pdf(source, dest, crop, append, gray, quality)
%
% This function converts an eps file... |
github | isetbio/isetbio-master | copyfig.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/copyfig.m | 845 | utf_8 | bf21447d5aa8f9a873cf45bc0c03cef0 | %COPYFIG Create a copy of a figure, without changing the figure
%
% Examples:
% fh_new = copyfig(fh_old)
%
% This function will create a copy of a figure, but not change the figure,
% as copyobj sometimes does, e.g. by changing legends.
%
% IN:
% fh_old - The handle of the figure to be copied. Default: gc... |
github | isetbio/isetbio-master | user_string.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/user_string.m | 2,460 | utf_8 | e8aa836a5140410546fceccb4cca47aa | %USER_STRING Get/set a user specific string
%
% Examples:
% string = user_string(string_name)
% saved = user_string(string_name, new_string)
%
% Function to get and set a string in a system or user specific file. This
% enables, for example, system specific paths to binaries to be saved.
%
% IN:
% string_name - ... |
github | isetbio/isetbio-master | export_fig.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/export_fig.m | 30,519 | utf_8 | 5ae1176795058daa1079bb1cb10a3cc1 | %EXPORT_FIG Exports figures suitable for publication
%
% Examples:
% im = export_fig
% [im alpha] = export_fig
% export_fig filename
% export_fig filename -format1 -format2
% export_fig ... -nocrop
% export_fig ... -transparent
% export_fig ... -native
% export_fig ... -m<val>
% export_fig... |
github | isetbio/isetbio-master | ghostscript.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/ghostscript.m | 5,167 | utf_8 | e274d22dbcaa074e52b4567ad806444d | %GHOSTSCRIPT Calls a local GhostScript executable with the input command
%
% Example:
% [status result] = ghostscript(cmd)
%
% Attempts to locate a ghostscript executable, finally asking the user to
% specify the directory ghostcript was installed into. The resulting path
% is stored for future reference.
% ... |
github | isetbio/isetbio-master | fix_lines.m | .m | isetbio-master/external/brainardlabtoolbox/Plotting/export_fig/fix_lines.m | 5,902 | utf_8 | 9189079deae83ff822d2b4a02744e2fd | %FIX_LINES Improves the line style of eps files generated by print
%
% Examples:
% fix_lines fname
% fix_lines fname fname2
% fstrm_out = fixlines(fstrm_in)
%
% This function improves the style of lines in eps files generated by
% MATLAB's print function, making them more similar to those seen on
% scre... |
github | isetbio/isetbio-master | combineContainersMat.m | .m | isetbio-master/external/brainardlabtoolbox/ContainerUtils/combineContainersMat.m | 4,229 | utf_8 | ba2c10f59aa10ccd688155a499a7e43f | function outContainer = combineContainersMat(theCellArrayOfContainers)
% Consolidate a cell array of containers of matrices into a container of a matrix.
%
% Syntax:
% outContainer = combineContainersMat(theCellArrayOfContainers)
%
% Description:
% Take a cell array of containers, each of which contains a matrix... |
github | isetbio/isetbio-master | combineContainers.m | .m | isetbio-master/external/brainardlabtoolbox/ContainerUtils/combineContainers.m | 4,266 | utf_8 | de2c51b7a404873102b91fe0e11f762c | function outContainer = combineContainers(theCellArrayOfContainers)
% Consolidate cell array of containers into a container of a cell array.
%
% Syntax:
% outContainer = combineContainers(theCellArrayOfContainers)
%
% Description:
% Function that takes a cell array of containers and returns a single
% contain... |
github | isetbio/isetbio-master | fitellipse.m | .m | isetbio-master/external/brainardlabtoolbox/Ellipses/fitellipse.m | 12,469 | utf_8 | de2ab60619feaf80ff407ba1737dc26f | function [z, a, b, alpha] = fitellipse(x, varargin)
%FITELLIPSE least squares fit of ellipse to 2D data
%
% [Z, A, B, ALPHA] = FITELLIPSE(X)
% Fit an ellipse to the 2D points in the 2xN array X. The ellipse is
% returned in parametric form such that the equation of the ellipse
% parameterise... |
github | isetbio/isetbio-master | visualizeParamsStructTree.m | .m | isetbio-master/external/brainardlabtoolbox/StructUtils/visualizeParamsStructTree.m | 3,415 | utf_8 | a29d52a74129d60eba3f594f5a49c05f | % Method to display all subfields of the params struct
function visualizeParamsStructTree(params, structName)
displayStruct(params, structName, '', 60)
end
function s = displayStruct(datum, datumName, s, maxFieldWidth)
a = whos; theOldStruct = a(1).name;
dots = find(datumName=='.');
if numel(dots)... |
github | isetbio/isetbio-master | RecursivelyCompareStructs.m | .m | isetbio-master/external/brainardlabtoolbox/StructUtils/RecursivelyCompareStructs.m | 25,889 | utf_8 | a3f1aa3a04c8f512b9390ca9db30ada7 | function result = RecursivelyCompareStructs(struct1Name, struct1, struct2Name, struct2, varargin)
% result = RecursivelyCompareStructsTests(struct1Name, struct1, struct2Name, struct2, varargin)
%
% Method to compare nested structs with arbitrary internal organization.
% Key/value pairs
% 'defaultTolerance', a numeric v... |
github | isetbio/isetbio-master | setExistingFieldsInStruct.m | .m | isetbio-master/external/brainardlabtoolbox/StructUtils/setExistingFieldsInStruct.m | 871 | utf_8 | c899420b71956aa3a5d8b94c7e971bc9 | % Method to set deepest fields of a struct/substruct by ensuring that
% the fields being set already exist in the struct.
% Usage: params = setExistingFieldsInStruct(params, ...
% { 'field1', field1Value; ...
% 'field2', field2Value; ...
% ...
% 'fi... |
github | isetbio/isetbio-master | cpuinfo.m | .m | isetbio-master/external/cpuinfo/cpuinfo.m | 9,346 | utf_8 | 5051c0b7bc458357ef3cb7a6080440e4 | function info = cpuinfo()
%CPUINFO read CPU configuration
%
% info = CPUINFO() returns a structure containing various bits of
% information about the CPU and operating system as provided by /proc/cpu
% (Unix), sysctl (Mac) or WMIC (Windows). This information includes:
% * CPU name
% * CPU clock speed
% ... |
github | isetbio/isetbio-master | mplay.m | .m | isetbio-master/external/movieplayer/mplay.m | 48,103 | utf_8 | 59ee91a5a1b33c70dbde80a138583239 | function mov = mplay(varargin)
%MPLAY Play a movie interactively.
% MPLAY(A) opens a new movie player GUI and loads movie data
% A into the player. Multiple players may be used at one time.
%
% MPLAY(A, FMT) explicity specifies a format string FMT for the
% movie data, in case a warning from MPLAY(A) indicates... |
github | isetbio/isetbio-master | CalibrateFitGamma.m | .m | isetbio-master/external/psychtoolbox/PsychCal/CalibrateFitGamma.m | 13,356 | utf_8 | d405c14bef29862850d50cf419fc2aeb | function cal = CalibrateFitGamma(cal,nInputLevels)
% cal = CalibrateFitGamma(cal,[nInputLevels])
%
% Fit the gamma function to the calibration measurements. Options for field
% cal.describe.gamma.fitType are:
% simplePower
% crtLinear
% crtPolyLinear
% crtGamma
% crtSumPow
% betacdf
% sigmoid
% ... |
github | isetbio/isetbio-master | FitConeFundamentalsWithNomogram.m | .m | isetbio-master/external/psychtoolbox/PsychColorimetricData/FitConeFundamentalsWithNomogram.m | 4,213 | utf_8 | df0093ecd7c7006c9abbdb7ce46f8515 | function [params,fitFundamentals,fitError] = FitConeFundamentalsWithNomogram(T_targetQuantal,staticParams,params0)
% [fitFundamentals,params,fitError] = FitConeFundamentalsWithNomogram(T_targetQuantal,staticParams,params0)
%
% Find underlying parameters that fit the passed corneal cone fundamentals.
%
% Needs the ... |
github | isetbio/isetbio-master | GenerateIsetbioDisplayObjectFromPTBCalStruct.m | .m | isetbio-master/external/psychtoolbox/+ptb/GenerateIsetbioDisplayObjectFromPTBCalStruct.m | 7,505 | utf_8 | 5d41d8f1ec592204534e2b93a7035e46 | function displayObject = GenerateIsetbioDisplayObjectFromPTBCalStruct(displayName, calStruct, ExtraCalData, saveDisplayObject)
% Generate an isetbio display object with given specifications.
%
% Synopsis:
% displayObject = ptb.GenerateIsetbioDisplayObjectFromCalStructObject(displayName, calStruct, ExtraCalData, sa... |
github | isetbio/isetbio-master | GeneratePsychToolboxCalStruct.m | .m | isetbio-master/external/psychtoolbox/+ptb/GeneratePsychToolboxCalStruct.m | 6,273 | utf_8 | ccb71808d38652dfbc4ca8826af70b5b | % Method to generate a PTB CalStruct for a display with given properties
%
% Synopsis cal = ptb.GeneratePsychToolboxCalStruct;
%
% Description:
% Generate a PTB calibration structure with default properties. Allows
% passing in of some key properties as key value pairs.
%
% Note that PTB expects power in uni... |
github | isetbio/isetbio-master | SubSampleSPDs.m | .m | isetbio-master/external/psychtoolbox/+ptb/SubSampleSPDs.m | 8,297 | utf_8 | 9c7270e62663227381825e8d877c9fc7 | function [subSampledWavelengthSampling, subSampledSPDs] = SubSampleSPDs(originalS, originalSPDs, targetS, lowPassSigma, showFig)
% Subsample spectral power distributions.
%
% Synopsis:
% [subSampledWavelengthSampling, subSampledSPDs] = ptb.SubSampleSPDs(originalS, originalSPDs, targetS, lowPassSigma, showFig)
%
% D... |
github | isetbio/isetbio-master | GeneratePTCalStructFromIsetbioDisplayObject.m | .m | isetbio-master/external/psychtoolbox/+ptb/GeneratePTCalStructFromIsetbioDisplayObject.m | 3,704 | utf_8 | e5dbc3712cf0db2c313b64a4c0d1af58 | % Generate a PTB calibration structure from an ISETBIO display object.
%
% Synopsis:
% PTBcal = ptb.GeneratePTCalStructFromIsetbioDisplayObject(display)
%
% Description:
% Produce a PTB calibration struct from an ISETBio display object.
%
% Note that the PTB power units convention is power per wavelength band... |
github | isetbio/isetbio-master | Var2Str.m | .m | isetbio-master/external/psychtoolbox/PsychFiles/Var2Str.m | 10,366 | utf_8 | 6e84896b57be4592efe4649b24525436 | function str = Var2Str(varargin)
% str = Var2Str(in,name)
%
% Takes variable IN and creates a string representation of it that would
% return the original variable when fed to eval(). NAME is the name of the variable
% that will be printed in this string.
% Can process any (combination of) MATLAB built-in datatyp... |
github | isetbio/isetbio-master | CheckDirs.m | .m | isetbio-master/external/psychtoolbox/PsychFiles/CheckDirs.m | 1,298 | utf_8 | a110351826588af32c9c20e4359476b7 | function CheckDirs(dirs,mode)
% CheckDirs(dirs,mode):
% Iterates over all fields in struct 'dirs' and checks whether the Contents are existing directory addresses.
% mode == 'check': Display an error if this is not the case.
% mode == 'make' : Creates the directory if it doesnt exist.
% Default mode is 'check'.
%... |
github | isetbio/isetbio-master | FileFromFolder.m | .m | isetbio-master/external/psychtoolbox/PsychFiles/FileFromFolder.m | 2,357 | utf_8 | 990dfb39666608ef14c50fba0806cc83 | function [file,nfile] = FileFromFolder(folder,mode,f_ext)
% [file,nfile] = FileFromFolder(folder,mode,ext)
%
% Returns struct with all files in directory FOLDER.
% MODE specifies whether an error is displayed when no directories are
% found (default). If MODE is 'silent', only a message will will be
% displayed i... |
github | isetbio/isetbio-master | MunsellGriddata3.m | .m | isetbio-master/external/psychtoolbox/PsychColorimetric/PsychMunsell/MunsellGriddata3.m | 6,452 | utf_8 | 95fc04f1c18f6f8c729fd14cb60cd5ae | function [w,X,tri,v] = MunsellGriddata3(x,y,z,v,xi,yi,zi,method,options,X,tri)
% [w,X,tri] = MunsellGriddata3(x,y,z,v,xi,yi,zi,method,options,X,tri)
%
% This is a modified version of the Matlab function griddata3. We modified
% to allow precomputing of the triangulation, and then direct use of that.
% This will allows... |
github | isetbio/isetbio-master | overrideBuiltInFunction.m | .m | isetbio-master/external/psychtoolbox/PsychOneliners/overrideBuiltInFunction.m | 2,251 | utf_8 | 3efaa0c9c2dc736fdbb9ec46c47480d6 | % Method to override a MATLAB built-in function with a user-supplied function
% with the same name. The way this works is that it replaces the built-in function
% with a function handle parameter whose name matches that of the overriden
% function.
%
% Usage:
% functionName = overrideBuiltInFunction('functionNam... |
github | isetbio/isetbio-master | brewermap_view.m | .m | isetbio-master/external/brewermap/brewermap_view.m | 10,809 | utf_8 | 72de38d4f9386274fc218196ae7dae2f | function [map,scheme] = brewermap_view(N,scheme)
% An interactive figure for ColorBrewer colormap selection. With demo!
%
% (c) 2014 Stephen Cobeldick
%
% View Cynthia Brewer's ColorBrewer colorschemes in a figure.
%
% * Two colorbars give the colorscheme in color and grayscale.
% * A button toggles between 3D-cube and... |
github | isetbio/isetbio-master | brewermap.m | .m | isetbio-master/external/brewermap/brewermap.m | 21,136 | utf_8 | 4b280a360af3d91b33bcafbdc6b0f184 | function [map,num,typ] = brewermap(N,scheme)
% The complete selection of ColorBrewer colorschemes (RGB colormaps).
%
% (c) 2014 Stephen Cobeldick
%
% Returns any RGB colormap from the ColorBrewer colorschemes, especially
% intended for mapping and plots with attractive, distinguishable colors.
%
%%% Syntax (basic):
% ... |
github | isetbio/isetbio-master | simGLM.m | .m | isetbio-master/external/pillow/simGLM.m | 4,297 | utf_8 | 027458295b4cb96879c962418a30ef04 | function [tsp,Vmem,Ispk] = simGLM(glmprs,Stim);
% [tsp, Vmem,Ispk] = simGLM(glmprs,Stim);
%
% Compute response of glm to stimulus Stim.
%
% Uses time rescaling instead of Bernouli approximation to conditionally
% Poisson process
%
% Dynamics: Filters the Stimulus with glmprs.k, passes this through a
% nonlin... |
github | hiweller/MBL_2015-master | edge_Otsu.m | .m | MBL_2015-master/HSI_process_scripts/edge_Otsu.m | 25,935 | utf_8 | cc8fca9da71a9ff761422f6a69071df0 | function [eout,thresh,gv_45,gh_135] = edge_Otsu(varargin)
%EDGE Find edges in intensity image.
% EDGE takes an intensity or a binary image I as its input, and returns a
% binary image BW of the same size as I, with 1's where the function
% finds edges in I and 0's elsewhere.
%
% EDGE supports six differ... |
github | hiweller/MBL_2015-master | TiffSort.m | .m | MBL_2015-master/HSI_process_scripts/TiffSort.m | 1,510 | utf_8 | fd4fb2eb54218c53b52c58dcbb36fb15 | % function TiffSort(Date)
%
% directoryRead = dir(['../',Date, '/*.tif*']);
%
% FileID = directoryRead(1).name(1:(end-13));
% mkdir(FileID)
%
% for i = 1:length(directoryRead)
% if length(directoryRead(i).name(1:(end-13))) == length(FileID)
% if directoryRead(i).name(1:(end-13)) == FileID
% m... |
github | kelfenbe/speex_pnacl-master | echo_diagnostic.m | .m | speex_pnacl-master/libspeex/echo_diagnostic.m | 2,076 | utf_8 | 8d5e7563976fbd9bd2eda26711f7d8dc | % Attempts to diagnose AEC problems from recorded samples
%
% out = echo_diagnostic(rec_file, play_file, out_file, tail_length)
%
% Computes the full matrix inversion to cancel echo from the
% recording 'rec_file' using the far end signal 'play_file' using
% a filter length of 'tail_length'. The output is saved to 'o... |
github | dagoodma/impact_alert-master | sel_camera.m | .m | impact_alert-master/matlab/Object_tracking/object_tracking/sel_camera.m | 2,203 | utf_8 | fc786d45870502fc7eae55f7fbb6c8ca | function varargout = sel_camera(varargin)
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @sel_camera_OpeningFcn, ...
'gui_OutputFcn', @... |
github | blondon/UGM-master | ind2sub_vec.m | .m | UGM-master/misc/ind2sub_vec.m | 307 | utf_8 | 70b641fdc4411f7a907efb813dfe76a1 | %% Variant of ind2sub that returns all dimensions in a vector rather than as separate arguments
function ind = ind2sub_vec(siz,ndx)
n = length(siz);
k = [1 cumprod(siz(1:end-1))];
ind = zeros(n,1);
for i = n:-1:1
vi = rem(ndx-1,k(i)) + 1;
vj = (ndx - vi)/k(i) + 1;
ind(i) = vj;
ndx = vi;
end
end |
github | blondon/UGM-master | myProcessOptions.m | .m | UGM-master/misc/myProcessOptions.m | 674 | utf_8 | b94d252a960faa95a3074129247619e6 | function [varargout] = myProcessOptions(options,varargin)
% Similar to processOptions, but case insensitive and
% using a struct instead of a variable length list
options = toUpper(options);
for i = 1:2:length(varargin)
if isfield(options,upper(varargin{i}))
v = getfield(options,upper(varargin{i}));
... |
github | blondon/UGM-master | UGM_CountBP.m | .m | UGM-master/UGM/misc/UGM_CountBP.m | 2,742 | utf_8 | 2b8356395b229b9c9ebea5a53e2475b1 | function [imsg,omsg,convergedStatus] = UGM_CountBP(nodePot,edgePot,nodeCount,edgeCount,edgeStruct,convTol,maximize)
[nNodes,nState] = size(nodePot);
nEdges = size(edgePot,3);
edgeEnds = edgeStruct.edgeEnds;
% For simplicity, all variables must have same number of states
assert(all(edgeStruct.nStates == nState), 'UGM_... |
github | blondon/UGM-master | UGM_ConvexBetheCounts.m | .m | UGM-master/UGM/misc/UGM_ConvexBetheCounts.m | 9,255 | utf_8 | f90cd02f86184d95cd5fbbd3d337d221 | function [nodeCount,edgeCount,auxCount,exitflags] = UGM_ConvexBetheCounts(edgeStruct,kappa,tgt,verbose,C,alwaysSlack)
%
% Computes the counting numbers for the Bethe approximation.
%
% edgeStruct : edge structure
% kappa : desired modulus of convexity (def: 0)
% tgt : target counting numbers:
% 1 = Bethe (def) (Meshi ... |
github | blondon/UGM-master | UGM_TreeBP.m | .m | UGM-master/UGM/misc/UGM_TreeBP.m | 3,036 | utf_8 | b1e462d283b246a4787e60c0e2801206 | function [messages] = UGM_TreeBP(nodePot,edgePot,edgeStruct,maximize)
[nNodes,maxState] = size(nodePot);
nEdges = size(edgePot,3);
edgeEnds = edgeStruct.edgeEnds;
nStates = edgeStruct.nStates;
V = double(edgeStruct.V);
E = edgeStruct.E;
% Count number of neighbors
nNeighbors = zeros(nNodes,1);
for n = 1:nNodes
n... |
github | blondon/UGM-master | UGM_Sample_VarMCMC.m | .m | UGM-master/UGM/sample/UGM_Sample_VarMCMC.m | 2,659 | utf_8 | b0169893a2e555c13b1e07770d5a14ce | function [samples] = UGM_Sample_VarMCMC(nodePot,edgePot,edgeStruct,burnIn,varProb)
% MCMC sampler that switches between random walk MH and variational MF
% sampling
%
% varProb is the probability of trying the variational move
% (set to 0 for purely variational proposals)
[nNodes,maxStates] = size(nodePot);
nEdges = s... |
github | blondon/UGM-master | UGM_Sample_Junction.m | .m | UGM-master/UGM/sample/UGM_Sample_Junction.m | 11,053 | utf_8 | 3a1b76defcee3aa51e4ad9c55c85fdae | function [samples] = UGM_Sample_Junction(nodePot,edgePot,edgeStruct,ordering)
debug = 0;
[nNodes,maxState] = size(nodePot);
nEdges = size(edgePot,3);
edgeEnds = edgeStruct.edgeEnds;
V = edgeStruct.V;
E = edgeStruct.E;
nStates = edgeStruct.nStates;
nSamples = edgeStruct.maxIter;
if nargin < 4
ordering = 1:nNodes;... |
github | blondon/UGM-master | UGM_Sample_Gibbs.m | .m | UGM-master/UGM/sample/UGM_Sample_Gibbs.m | 1,540 | utf_8 | 3088eaf55652a9099e73fe6e895bbee2 | function [samples] = UGM_Sample_Gibbs(nodePot,edgePot,edgeStruct,burnIn,y)
% [samples] = UGM_Sample_Gibbs(nodePot,edgePot,edgeStruct,burnIn,y)
% Single Site Gibbs Sampling
if nargin < 5
% Initialize
[junk y] = max(nodePot,[],2);
end
if edgeStruct.useMex
samples = UGM_Sample_GibbsC(nodePot,edgePot,edgeStruct.edgeE... |
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