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github
SMASHtoolbox/release-master
preview.m
.m
release-master/+SMASH/+SignalAnalysis/@STFT/development/preview.m
1,990
utf_8
c79b2d780e18ad4ebf96427be6447ce9
% preview Generate/display previews % % This method generates and displays preview images for STFT objects. % These images are low to moderate resolution power spectra used in % visualization and region of interest selection. They are generated by % the analyze method using the current FFT settings. % % To generate a ...
github
SMASHtoolbox/release-master
uitable_test.m
.m
release-master/+SMASH/+SignalAnalysis/@STFT/development/uitable_test.m
1,515
utf_8
0448ea22b354f2db41169cc4ef17a624
% UNDER CONSTRUCTION function uitable_test(data,label) % handle input if (nargin<1) || isempty(data) data=randn(100,4); temp=1:size(data,1); data(:,1)=temp(:); end columns=size(data,2); if (nargin<2) || isempty(label); label=cell(1,columns); for m=1:columns label{m}=sprintf('Column %d',m);...
github
SMASHtoolbox/release-master
fixDoc.m
.m
release-master/+SMASH/+System/fixDoc.m
2,974
utf_8
7f7ba4807fe862515d1a0b59a1c39169
% fixDoc Fix custom documentation display % % This function changes how MATLAB displays custom documentation. Prior to % release 2013b, function/class/package documentation produced outside of % the MathWorks was displayed in the MATLAB web browser. More recent % releases display custom documentation in MATLAB's help...
github
SMASHtoolbox/release-master
scanLAN.m
.m
release-master/+SMASH/+System/scanLAN.m
1,355
utf_8
09224ebc7a8736b969d7d0fab8d134fa
% scanLAN Scan local area network % % This function scans a local area network, returning a list of addresses % that respond to a ping request. % list=scanLAN(); % full range % list=scanLAN(pattern); % partial range, e.g. '101-110' % The output "list" is a cell array of IP addresses. % % See also SMASH.System, pi...
github
SMASHtoolbox/release-master
showDocumentation.m
.m
release-master/+SMASH/+System/showDocumentation.m
1,501
utf_8
c24d6dc5ca91467777b599ec18d25678
% UNDER CONSTRUCTION % showDocumentation Show published documentation % % This function shows formatted documentation associated with the SMASH % toolbox. Documentation files are scripts displayed in HTML format. These % files are always located in a subdirectory name "doc" within the relevant % package/class director...
github
SMASHtoolbox/release-master
localhost.m
.m
release-master/+SMASH/+System/localhost.m
1,241
utf_8
6dbcdc5c0ca1ea6e57b9c0ac00d1feee
% localhost Determine local IP address % % This function determines the local IP address, regardless of the current % operating system. % address=localhost(); % % See also System, listIP4, ping % % % created April 26, 2017 by Daniel Dolan (Sandia National Laboratories) % function address=localhost() if ispc [~...
github
SMASHtoolbox/release-master
bash.m
.m
release-master/+SMASH/+System/bash.m
1,893
utf_8
3950b6ff9d0e02444e804c51fe3af3f2
% bash Bash shell mode % % This function starts Bash shell mode, where all input typed into the % MATLAB command window is passed directly to Unix. % bash(); % Bash mode persists until the user types "stop" on an otherwise empty line. % % Shell processes with interactive control may not properly with this % function...
github
SMASHtoolbox/release-master
showExample.m
.m
release-master/+SMASH/+System/showExample.m
2,143
utf_8
e0c90516ef09d9c1ef5216fa833b17eb
% showExample Show example script % % This function shows an example script associated with the SMASH. Script % files are always located in a subdirectory named "examples" within % the relevant package/class directory. % showExample(name); % [smashroot]/examples % showExample(name,location) % [smashroot]/[locati...
github
SMASHtoolbox/release-master
deploy.m
.m
release-master/+SMASH/+System/deploy.m
1,634
utf_8
6dd3eebfde58a6ce7d5a5039226d1921
% deploy Collect MATLAB code for deployment % % % function deploy(source,destination) % manage input if (nargin < 1) || isempty(source) source=pwd; end assert(logical(exist(source,'file')),'ERROR: invalid source'); if (nargin < 2) || isempty(destination) destination=fullfile(pwd,'deploy'); end % analyze so...
github
SMASHtoolbox/release-master
runShell.m
.m
release-master/+SMASH/+System/runShell.m
2,350
utf_8
e8bf36671716ea6ed00bb3e0941f1e72
% runShell Run commands in an operating system shell % % This function passes commands to an operating system shell: % Windows : DOS % Macintosh : bash (typically) % Linux : bash/csh/tcsh (depending on configuration) % The function can be used on any operating system, but caution % is needed when moving ...
github
SMASHtoolbox/release-master
callMATLAB.m
.m
release-master/+SMASH/+System/callMATLAB.m
5,529
utf_8
5b90253280d17f723b7d28a29cbd8043
% callMATLAB Allow MATLAB calls from command shell % % This function allows MATLAB commands to be passed from an external % command shell. Turning this capability on: % callMATLAB('on'); % creates a shell script "callMATLAB.sh" in the current directory. % Executing that script in an external script passes commands ...
github
SMASHtoolbox/release-master
verifyFileName.m
.m
release-master/+SMASH/+System/verifyFileName.m
747
utf_8
3c4e7bc14b53fff5b4024cd173139590
% verifyFileName Verify file name % % This function determines if a text string is a valid file name. % result=verifyFileName(name); % The output "result" is a logical value. % % See also System % % % % function result=verifyFileName(name) % manage input assert(nargin > 0,'ERROR: no name specified'); % perform te...
github
SMASHtoolbox/release-master
username.m
.m
release-master/+SMASH/+System/username.m
489
utf_8
835e2ac7daddd3c99ad3f73a12699d24
% username Determine user name % % This function returns the name of the current MATLAB user. % value=username(); % % See also hostID, userdir, userpath % % % created May 9, 2018 by Daniel Dolan (Sandia National Laboratories) % function value=username() if isunix % Mac and Linux command='whoami'; else % Window...
github
SMASHtoolbox/release-master
hostID.m
.m
release-master/+SMASH/+System/hostID.m
598
utf_8
a5aebc3a70edf9ec22ddfee08086b202
% hostID Determine computer's host ID % % This function determines the host ID of the computer running MATLAB by % probing the operating system. % value=hostID; % % See also userdir, username % % created February 24, 2013 by Daniel Dolan (Sandia National Laboratories) function value=hostID() if isunix [~,re...
github
SMASHtoolbox/release-master
checkMemory.m
.m
release-master/+SMASH/+System/checkMemory.m
2,883
utf_8
688670bc1fc77e506910867e9f1cee3e
% checkMemory Check memory use % % This function checks the memory used by MATLAB. % report=checkMemory(); % checkMemory(); % The first command returns memory information in a structure, while the % second command prints this information in the command window. % % Memory used by the current MATLAB process is expr...
github
SMASHtoolbox/release-master
getPreference.m
.m
release-master/+SMASH/+System/getPreference.m
1,895
utf_8
45b6c8c2b453575002934a24a3ac2657
% getPreference Get toolbox preferences % % This function gets preferences associated with the SMASH toolbox. % Specific preferences are accessed by name. % value=getPreference(name); % Omitting the name returns a structure containing all preferences % value=getPreference(); % % Preference values are displayed in...
github
SMASHtoolbox/release-master
listIP4.m
.m
release-master/+SMASH/+System/listIP4.m
2,609
utf_8
16037032931b3b1c0f23db778ca99d9b
% listIP4 Generate a list of private IP4 addresses % % This function generates a list of private IP4 addresses. Full address % specification uses four blocks, separated by periods, with integers, % integer ranges, or wildcards. % address=listIP4('192.168.0.*'); everything in 192.168.0 % address=listIP4('192.168.0...
github
SMASHtoolbox/release-master
userdir.m
.m
release-master/+SMASH/+System/userdir.m
406
utf_8
1b4e50d092ae75603789ad1b9bf13d3c
% userdir Determine user directory % % This function returns the home directory of the current user. % location=userdir(); % % See also hostID, username, userpath % % % created July 12, 2018 by Daniel Dolan (Sandia National Laboratories) % function location=userdir() if isunix % Mac and Linux location=getenv('...
github
SMASHtoolbox/release-master
shutdownWindows.m
.m
release-master/+SMASH/+System/shutdownWindows.m
1,969
utf_8
8e5dd62d8ad16614d193521e696f1473
% shutdownWindows Send Windows shutdown command % % This function sends a Windows shutdown command to an IP address. % shutdownWindows(password,address); % The first argument "password" must be the Administrator password for the % machine at the specified "address" (e.g., '192.168.85.1'). Multiple % addresses can b...
github
SMASHtoolbox/release-master
setPreference.m
.m
release-master/+SMASH/+System/setPreference.m
1,936
utf_8
1e0fbb1d20e9a92e96eb0f80354472ce
% setPreference Set toolbox preference(s) % % This function sets preferences used by the SMASH toolbox. % setPreference(name,value); % The input "name" must be a valid variable name: character strings % beginning with a letter containing letters, numbers, and underscores only % (case sensitive). The input "value" c...
github
SMASHtoolbox/release-master
userpath.m
.m
release-master/+SMASH/+System/userpath.m
947
utf_8
3b0c27f94fa73b2bd2aa1e2fb586278d
% userpath Determine user path % % This function determines the directories accessible to MATLAB that are % not part of MATLAB itself. % list=userpath(); % The output "list" is a cell array of text strings showing the current % user path. This list is considerably shorter than the results from % MATLAB's path comma...
github
SMASHtoolbox/release-master
simulateMouse.m
.m
release-master/+SMASH/+System/simulateMouse.m
1,116
utf_8
098a1e20cc8cb96284652747082043d4
% simulateMouse Simulate mouse action % % This function simulates a mouse action. % simulateMouse('press'); % simulate primary button click % simulateMouse('release'); % simulate primary button release % % See also SMASH.System % % % created April 8, 2018 by Daniel Dolan (Sandia National Laboratories) % functi...
github
SMASHtoolbox/release-master
tone.m
.m
release-master/+SMASH/+System/tone.m
1,378
utf_8
a66df3932c12295e775a2fc85b56be5c
% tone Generate an audio tone % % This function generates an audio tone. % tone(frequency,duration); % The default frequency is 700 Hz and the default duration is 0.1 seconds. % % There is a slight delay, typically less than a second, between % the function call and sound production. This delay is returned as an ...
github
SMASHtoolbox/release-master
isParallel.m
.m
release-master/+SMASH/+System/isParallel.m
901
utf_8
1e6ab19bd20786227f51df00e4fbd1ce
% isParallel Determine if parallel processing is available % % This function determines if parallel processing is available on the % current system. % [result,workers]=isParallel(); % The output "result" is true when the Parallel Processing Toolbox is % present *and* multiple workers are enabled. The number of acti...
github
SMASHtoolbox/release-master
checkCPU.m
.m
release-master/+SMASH/+System/checkCPU.m
1,168
utf_8
ce73b7e4f2c46fe4f6cccc7d8068fa17
% checkCPU Check number of processors % % This functions checks the number of *physical* processors on the current % system. % N=checkCPU(); % If no output is requested, the result is printed on the command window. % % See also SMASH.System % % % created June 10, 2019 by Daniel Dolan (Sandia National Laboratories) ...
github
SMASHtoolbox/release-master
ping.m
.m
release-master/+SMASH/+System/ping.m
2,588
utf_8
93c68da1118d9cfe216a850817fc96fa
% ping Send network ping to an IP address % % This function sends a network ping to a specified address. % delay=ping(address); % If no address is specified, the ping is sent to the local host machine. % The output "delay" is the delay time in milliseconds; NaN values % indicate that the ping was unsuccessful, i.e. ...
github
SMASHtoolbox/release-master
checkInternet.m
.m
release-master/+SMASH/+System/checkInternet.m
1,218
utf_8
57cb8a4eb5388959514e8852502a4ac2
% checkInternet Determine Internet status % % This function returns a logical flag indicating if an Internet connection % is available. % available=checkInternet(); % Requesting a second output: % [available,firewall]=checkInternet(); % returns another logical flag indicating if a firewall is present. % NOTE: Th...
github
SMASHtoolbox/release-master
live2script.m
.m
release-master/+SMASH/+System/+convert/live2script.m
1,551
utf_8
fdfb1d827f88036a7d44384db8ed5cb9
% live2script Convert live script to a script file % % This function converts a live script file (*.mlx) to a standar script % file. % live2script(source,destination); % Omitting the input "source" prompts the user to select a live script. % Omitting the second file generates the standard script in the same % locati...
github
SMASHtoolbox/release-master
script2live.m
.m
release-master/+SMASH/+System/+convert/script2live.m
1,549
utf_8
ec4b3e1107ad916e74bd4f719424ff7f
% script2live Convert script file to a live script % % This function converts a standard script file (*.m) to a live script % (*.mlx). % script2live(source,destination); % Omitting the input "source" prompts the user to select a script file. % Omitting the second file generates the live script in the same location %...
github
SMASHtoolbox/release-master
app2class.m
.m
release-master/+SMASH/+System/+convert/app2class.m
1,657
utf_8
dd9b27170a58c169ba04f9e601ee1b68
% app2class Convert App Designer file to a class definition % % This function converts a *.mlapp file (as created by the App Designer) to % a *.m class definition. % app2class(source); % Omitting the input "source" prompts the user to select a *.mlapp file. % % The converted class file is saved in the current direc...
github
SMASHtoolbox/release-master
selectTab.m
.m
release-master/+SMASH/+System/@WebBrowser/selectTab.m
659
utf_8
1dd85d5d4f32dbfdddde114efc51d865
% selectTab Select browser tab % % This method selects a particular tab in the web browser. % selectTab(object); % command window selection % selectTab(object,index); % % See also WebBrowser, createTab, probeTab % % % created April 20, 2018 by Daniel Dolan (Sandia National Laboratories) % function selectTab(obje...
github
SMASHtoolbox/release-master
probeTab.m
.m
release-master/+SMASH/+System/@WebBrowser/probeTab.m
933
utf_8
20cc3821fe03f6e6f611b781143bc948
% probeTab Extract data from a browser tab % % This method extracts inforamtion from the current browser tab. % address=probeTab(object); % URL only % [address,content]=probeTab(object); % URL and all HTML content % % Passing a second input extracts data from a specific tab. % [...]=probeTab(object,index); % %...
github
SMASHtoolbox/release-master
updateTab.m
.m
release-master/+SMASH/+System/@WebBrowser/updateTab.m
827
utf_8
8bd383e10afd219235956e1b54e5e77e
% updateTab Update browser tab % % This method updates the current browser tab. % updateTab(object,address); % If no address is specified, the current location is reloaded. % % Passing a third input updates a specific browser tab. % updateTab(object,address,index) % % See also WebBrowser, createTab, probeTab % ...
github
SMASHtoolbox/release-master
rehash.m
.m
release-master/+SMASH/+System/@WebBrowser/rehash.m
1,900
utf_8
0856248e558bcb7d5929931ebd65a3c0
% rehash Scan browser contents % % This method scans MATLAB's web browser, looking for changes that may have % occured outside of the WebBrowser object's control % rehash(object); % % See also WebBrowser % % % created April 20, 2018 by Daniel Dolan (Sandia National Laboratories) % function rehash(object) [~,browse...
github
SMASHtoolbox/release-master
closeTab.m
.m
release-master/+SMASH/+System/@WebBrowser/closeTab.m
684
utf_8
bcc2eb2a4e6312079064b6f9c6e27926
% closeTab Close browser tab % % This method closes a web browser tab. % closeTab(object); % close current tab % closeTab(object,index); % close specified tab % % See also WebBrowser, createTab % % % created April 20, 2018 by Daniel Dolan (Sandia National Laboratories) % function closeTab(object,index) % manage...
github
SMASHtoolbox/release-master
createTab.m
.m
release-master/+SMASH/+System/@WebBrowser/createTab.m
460
utf_8
e940b3949c7fd742c9a1589c248d1376
% createTab Create new browser tab % % This method creates a new tab in the web browser. % createTab(object); % empty tab % createTab(object,address); % open tab at a specified address % % See also WebBrowser, closeTab % % % created April 20, 2018 by Daniel Dolan (Sandia National Laboratories) % function createT...
github
SMASHtoolbox/release-master
getPosition.m
.m
release-master/+SMASH/+System/@WebBrowser/old/getPosition.m
245
utf_8
329122d4f94a99c39d4fdf349d22ab13
% UNDER CONSTRUCTION function value=getPosition() master=getMaster(); x0=master.getX(); y0=master.getY(); temp=master.getSize(); Lx=temp.getWidth(); Ly=temp.getHeight(); pos=get(groot,'ScreenSize'); y0=pos(4)-y0-Ly; value=[x0 y0 Lx Ly]; end
github
SMASHtoolbox/release-master
setPosition.m
.m
release-master/+SMASH/+System/@WebBrowser/old/setPosition.m
960
utf_8
5d1cc090a716b409dadcc0b11bdf9b37
% UNDER CONSTRUCTION function setPosition(value) persistent getPosition if isempty(getPosition) getPosition=@() SMASH.System.WebBrowser.getPosition(); end % manage input if isnumeric(value) switch numel(value) case 2 pos=object.Position; pos(1:2)=value; value=pos; ...
github
SMASHtoolbox/release-master
setAddress.m
.m
release-master/+SMASH/+System/@WebBrowser/old/setAddress.m
151
utf_8
541872f475afb4c728df15599acf0604
% UNDER CONSTRUCTION % % WebBrowser.setAddress(url); % WebBrowser.setAddress(index,url); function setAddress(varargin) url=varargin{1}; web(url); end
github
SMASHtoolbox/release-master
listTabs.m
.m
release-master/+SMASH/+System/@WebBrowser/old/listTabs.m
797
utf_8
4efda9a740ea21d06ab9ecb3767f968f
% UNDER CONSTRUCTION % WebBrowser.listTabs() % prints report to the command window % tab=WebBrowser.listTabs(); % "tab" is a structure array % % [tab,browser]=WebBrowser.listTabs(); function varargout=listTabs() master=getMaster(); report=[]; list=matchClass(master,'Tabs\$Tab'); for n=1:numel(list) temp=char(l...
github
SMASHtoolbox/release-master
getAddress.m
.m
release-master/+SMASH/+System/@WebBrowser/old/getAddress.m
291
utf_8
ad8cde68143e2bf425d48229fc98d822
% UNDER CONSTRUCTION function value=getAddress(object) if (nargin < 1) || isempty(index) browser=getBrowser(); elseif SMASH.General.testNumber(browser,'positive','integer','notzero') else % TO DO end list=matchClass(browser,'TextField'); value=char(list{1}.getText()); end
github
SMASHtoolbox/release-master
reset.m
.m
release-master/+SMASH/+System/@Log/reset.m
1,088
utf_8
a9f30fde883c58b793544d58b416b210
% reset Reset log target(s) % % This method resets the list of targets where log messages are sent. % reset(object,target1,...); % Valid targets include: % -'-stdout' and '-stderr' for the command window % -Text file names % -List box handles % The default target, if none are specified, is '-stdout'. % % Se...
github
SMASHtoolbox/release-master
purge.m
.m
release-master/+SMASH/+System/@Log/purge.m
1,949
utf_8
b264323ec69fef8b8332bfe0275cbc49
% purge Purge log entries % % This method purges messages from one or more log targets. % purge(object); % Log files and list boxes are automatically purged by default, leaving the % command window untouched. % % Specific log types can be purged with additional input arguments. % purge(object,target,...); % Val...
github
SMASHtoolbox/release-master
write.m
.m
release-master/+SMASH/+System/@Log/write.m
2,366
utf_8
7a7ee2205e4b52d23693dfdfefe2355e
% write Write log message % % This method writes messages to all log targets. Messages can be a cell % array of strings: % write(object,message); % or a format statement with optional arguments. % write(object,format,arg1,...); % Format operators and special characters can be used in the latter case. % % Due to...
github
SMASHtoolbox/release-master
WorkspacePreference.m
.m
release-master/+SMASH/+System/private/WorkspacePreference.m
824
utf_8
c18192c323f484dc1e36584f714375f2
% WorkspacePreference(name,value); % set % value=WorkspacePreference(name); % get % % data=WorkspacePreference(); % reveal settings % WorkspacePreference(name,[],'remove'); % remove setting function varargout=WorkspacePreference(varargin) persistent data if isempty(data) data=struct(); end % reveal mode if nargi...
github
SMASHtoolbox/release-master
PermanentPreference.m
.m
release-master/+SMASH/+System/private/PermanentPreference.m
911
utf_8
09e1126b347d7e63eb55b7f4d4aa4608
% PermanentPreference(name,value); % set % value=PermanentPreference(name); % get % % data=PermanentPreference(); % reveal settings % PermanentPreference(name,[],'remove'); % remove setting function varargout=PermanentPreference(varargin) % reveal mode if nargin==0 varargout{1}=getpref('SMASHtoolbox'); if ise...
github
SMASHtoolbox/release-master
SessionPreference.m
.m
release-master/+SMASH/+System/private/SessionPreference.m
820
utf_8
a1937086b055c7c8f72207609a0cfa52
% SessionPreference(name,value); % set % value=SessionPreference(name); % get % % data=SessionPreference(); % reveal settings % SessionPreference(name,[],'remove'); % remove setting function varargout=SessionPreference(varargin) persistent data if isempty(data) data=struct(); end mlock % reveal mode if nargin==0...
github
SMASHtoolbox/release-master
restoreDPI.m
.m
release-master/+SMASH/+System/private/old/restoreDPI.m
603
utf_8
a33aa7e73dd6802151930cba4662d956
% function restoreDPI() % locate log file pathname=fileparts(mfilename('fullpath')); filename=fullfile(pathname,'DPI.log'); if ~exist(filename,'file') error('ERROR: no screen calibration exists for this system'); end % read log file ID=mui.tools.hostID; fid=fopen(filename,'r'); [~]=fgetl(fid); % read header whil...
github
SMASHtoolbox/release-master
isScript.m
.m
release-master/+SMASH/+System/old/@Script/isScript.m
877
utf_8
0740ace847a28b4d99b3d33f6c3198c8
% isScript Determine if file is a MATLAB script % % This method determines if a specified file is a MATLAB script. % value=isScript(filename) % The output "value" is true for traditional script files ('*.m') and live % script files ('*.mlx'). Function/class definitions and any other file % type (including invalid/m...
github
SMASHtoolbox/release-master
insertExample.m
.m
release-master/+SMASH/+System/old/@Script/insertExample.m
1,929
utf_8
22a08f4bb77f31380a0e15e81ffcff5c
% insertExample Insert example into toolbox % % This method inserts a MATLAB script into the "examples" directory of the % SMASH toolbox. % Script.insertExample(filename); % The input "filename" must be a standard or live script file. Live % scripts are automatically converted to standard scripts during insertion. ...
github
SMASHtoolbox/release-master
convert.m
.m
release-master/+SMASH/+System/old/@Script/convert.m
2,937
utf_8
4b97633d5d437aaddc09c7f8f735bc4c
% convert Convert between standard and live scripts % % This methods converts between standard and live script files. % The general syntax is: % script.convert(source,target); % The input "source" must be the name of a MATLAB script file. Standard % scripts (*.m) are converted to live scripts (*.mlx) and vice versa...
github
SMASHtoolbox/release-master
extractExample.m
.m
release-master/+SMASH/+System/old/@Script/extractExample.m
2,567
utf_8
5ac779be3c950dfc5e30cd0ed4033eb8
% extractExample Extract examples from toolbox % % This method extracts MATLAB scripts(s) from the "examples" directory of % the SMASH toolbox and copies them to a local subdirectory. % Script.extractExample(); % extract all scripts % Script.extractExample(subdir); % extract script from one subdirectory % Example...
github
SMASHtoolbox/release-master
readFolder.m
.m
release-master/+SMASH/+ImageAnalysis/@GatedImage/readFolder.m
4,108
utf_8
1db06bf9f0dd840479a8ea26f87d536a
% UNDER CONTRUCTION % readFolder Read image folder % function data=readFolder(location) data=struct(); if nargin < 0 location=uigetdir(pwd,'Select image folder'); if isnumeric(location) return end else assert(ischar(location) && isfolder(location),... 'ERROR: invalid image fol...
github
SMASHtoolbox/release-master
readFile.m
.m
release-master/+SMASH/+ImageAnalysis/@GatedImage/readFile.m
1,633
utf_8
ec1e28b624568a9d8e65427530a69115
% UNDER CONTRUCTION % *.spe % *.hdf function data=readFile(source) data=struct(); if nargin < 1 location=uigetfile({'*.*' 'All files'},'Select image file'); if isnumeric(location) return end else assert(ischar(source),'ERROR: invalid file name'); if contains(source,'*') ...
github
SMASHtoolbox/release-master
apply.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/apply.m
2,928
utf_8
e6b9f8d39617dabfe336aa48aa1784dc
% APPLY Remove distortion from an Image object % % This method removes geometric distortion from a target object using the % information stored in a Distortion object. % >> result=apply(object,target); % The second input "target" can be an object of the Image class or any % subclass of Image. % % Local Jacobian corr...
github
SMASHtoolbox/release-master
rotate.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/rotate.m
1,672
utf_8
f5fb0a2429800817e981ad2bb134e830
% rotate Rotate measured image % % This method rotates step wedge measurement. The image can be rotated by % a specified angle (in degrees): % >> object=rotate(object,theta); % or automatically. % >> object=rotate(object); % Automatic rotation forces the image's longest dimension to be horiztonal, % with incre...
github
SMASHtoolbox/release-master
blurGlobal.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/blurGlobal.m
1,400
utf_8
9b9e452bca65c6ba3a169e93dedc3123
% % created January 10, 2014 by Daniel Dolan (Sandia National Laboratories) % function object=blurGlobal(object,order) % handle input if (nargin<2) || isempty(order) order=1; end assert(isnumeric(order),'ERROR: order must be numeric'); if numel(order)==1 order=repmat(order,[1 2]); else order=order(1:2); en...
github
SMASHtoolbox/release-master
blur.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/blur.m
1,101
utf_8
a15efd60da22c1957992ba69f5a5773b
% BLUR Reduce sharp isomesh variations % % This method "blurs" the isomesh of a Distortion object, reducing % high-frequency spatial variations. Two types of blurring are supported. % >> new=blur(object,'local'); % default choice % >> new=blur(object,'global',[order]); % Local blurring replaces each mesh point b...
github
SMASHtoolbox/release-master
clean.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/clean.m
808
utf_8
5f07d62bb3ef032875188582bf3f02e4
% clean Remove local artifacts % % This method "cleans" distortion grid measurements. Local artifacts are % removed from a specified neighborhood via a median filter. % >> object=clean(object); % default neighborhood is 9x9 pixels % >> object=clean(object,nhood); % Neighborhoods are specified by one or two num...
github
SMASHtoolbox/release-master
blurLocal.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/blurLocal.m
1,403
utf_8
f7ff1f092007d3828d5f51c3c4c3f661
% % created January 10, 2014 by Daniel Dolan (Sandia National Laboratories) % function object=blurLocal(object) Xold=object.IsoMesh1; Xnew=Xold; Yold=object.IsoMesh2; Ynew=Yold; [N,M]=size(Xold); for n=2:(N-1) for m=2:(M-1) x=[Xold(n,m-1) Xold(n+1,m) Xold(n,m+1) Xold(n-1,m)]; y=[Yold(n,m-1) Yold(n+1,...
github
SMASHtoolbox/release-master
crop.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/crop.m
755
utf_8
4faa88c8aa126ab9d8747477d5c49247
% crop Crop step wedge measurement % % This method crops the measured step wedge image. Cropping can be % selected interactively: % >> object=crop(object); % >> object=crop(object,'manual'); % or by specifying horizontal and vertical ranges. % >> object=crop(object,hrange,vrange); % % NOTE: images should b...
github
SMASHtoolbox/release-master
remesh.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/remesh.m
1,559
utf_8
d8529a6638c41c1ed26a627eaee43d29
% REMESH Generate corrected mesh arrays % % This method generates corrected mesh arrays from the isomesh arrays in a % Distortion object. % >> object=remesh(object); % % See also Distortion, apply, blur, visualize % % % created January 13, 2014 by Daniel Dolan (Sandia National Laboratories) % function object=remes...
github
SMASHtoolbox/release-master
locate.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/locate.m
6,024
utf_8
04c7c3f0a9fe700cae87a8e95fee2794
% LOCATE Define isopoints in a Distortion object. % % This method defines isopoints--locations that should have a common grid % value--in a Distortion object. These points are used to construct a % mesh that controls distortion removal. % % Isopoints may be % selected interactively: % >> object=locate(object); % or...
github
SMASHtoolbox/release-master
center.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/center.m
65
utf_8
150236f3586a7eb2115057fbc23601f5
% under construction function object=center(object,varargin) end
github
SMASHtoolbox/release-master
create.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/create.m
1,007
utf_8
e76a76baa50d37d411c4b5b57337ab6d
% This method fills in the Settings and Results property during object % creation function object=create(object) % general set up object.Measurement.GraphicOptions.Title='Distortion grid'; % % set up settings structure % settings=struct(); % % settings.ID=object.DefaultID; % % settings.StepLevels = object.DefaultSt...
github
SMASHtoolbox/release-master
extend.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/extend.m
1,212
utf_8
fbd9fbf9ac5f6249b5181dabf00e7640
% EXTEND Extend isomesh by one point in each direction % % This method adds new mesh points to an existing Distrotion object, extending % the mesh boundaries vertically and horizontally. % % Usage: % >> object=extend(object); % % See also Distortion, apply, locate, visualize % % created January 13, 2014 by Daniel Do...
github
SMASHtoolbox/release-master
restore.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/restore.m
272
utf_8
5f99760881752619af0387e09a069abc
% restore Restore DistortionGrid object from an archive function object=restore(data) object=SMASH.ImageAnalysis.DistortionGrid('-empty'); name=fieldnames(data); for n=1:numel(name) if isprop(object,name{n}) object.(name{n})=data.(name{n}); end end end
github
SMASHtoolbox/release-master
view.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/view.m
3,137
utf_8
de78cf5ca9ff870c531764dc9c9c228a
% view Distortion grid visualization % % This method displays distortion grid information. The default % visualization is the measured image. % view(object); % view(object,'measurement'); % Alternate visualizations may also be chosen. % view(object,'isopoints'); % view(object,'isomesh'); % view(object,'...
github
SMASHtoolbox/release-master
mesh.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/mesh.m
2,411
utf_8
0dfa673ff0dc6fcfe0332ebf83122f71
% MESH Generate isomesh arrays % % This method generates isomesh arrays from the isopoints in a Distortion % object. % >> object=mesh(object); % % See also Distortion, apply, blur, visualize % % % created January 7, 2014 by Daniel Dolan (Sandia National Laboratories) % function object=mesh(object) % extract iso...
github
SMASHtoolbox/release-master
vmsort.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/private/vmsort.m
2,567
utf_8
4377d9b943854d7564f15175e968d13f
% VMSORT Sort table based on vector magnitude % % This function sorts (x,y) data stored as columns in a table. Data is % sorted sequentially after the second row in the table. Subsequent rows % are associated with the nearest sorted row. The new row is inserted % before or after the nearest point based on the most c...
github
SMASHtoolbox/release-master
vdsort.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/private/old/vdsort.m
1,578
utf_8
2c992aad8df1af4c4211eef55b37f2ab
% VDSORT Sort table based on vector direction % % This function sorts a two-dimensional table to maintain consistent % vector directions. % >> table=vdsort([x(:) y(:)]); % After sorting is complete, any vector pair created from % three adjacent rows in the table will point in the same general % direction, i.e. their...
github
SMASHtoolbox/release-master
sortTable.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/private/old/sortTable.m
748
utf_8
d749a50927134d7e2bb2f40d09044e8b
% sortTable Sort [x y] table based on distance and direction % % function table=sortTable(table,start) % handle input assert(nargin>0,'ERROR: no table specified'); [rows,columns]=size(table); if columns ~= 2 error('ERROR: table must be two-dimensional'); end if nargin<2 start=[]; elseif strcmpi(start,'last'...
github
SMASHtoolbox/release-master
remesh.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/old/remesh.m
219
utf_8
12474ddfac3b790f36f8ba9c222e9b6c
% UNDER CONSTRUCTION % % See also Distortion, apply, blur, visualize % % % created January 7, 2014 by Daniel Dolan (Sandia National Laboratories) % function [IsoMesh1,IsoMesh2,ArcMesh1,ArcMesh2]=remesh(object) end
github
SMASHtoolbox/release-master
restore.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/old/restore.m
260
utf_8
23ca40b8742ab4b2ee939ddcba3d5266
% restore Restore Image object from an archive function object=restore(data) object=SMASH.ImageAnalysis.Distortion([],[],NaN); name=fieldnames(data); for n=1:numel(name) if isprop(object,name{n}) object.(name{n})=data.(name{n}); end end end
github
SMASHtoolbox/release-master
view.m
.m
release-master/+SMASH/+ImageAnalysis/@DistortionGrid/old/view.m
3,704
utf_8
df27b6a862fff50dfcec45c53ce84daa
% view Distortion grid visualization % % This method visually displays step wedge information. The default % visualization is the measured image. % >> view(object); % >> view(object,'Measurement'); % Analysis results can also be displayed. % >> view(object,'Results'); % % See also StepWedge, clean, crop, r...
github
SMASHtoolbox/release-master
apply.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/apply.m
1,193
utf_8
ce04e0886204c29df505ea1ffe1ddc26
% apply Apply step wedge to an image % % This method linearizes an image using results from step wedge analysis. % >> new=apply(object,target); % The target is an Image that is linearized to produce a new Image. % Linearization can only be performed after the StepWedge object is % analyzed! % % See also SMASH.Image...
github
SMASHtoolbox/release-master
rotate.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/rotate.m
1,907
utf_8
6b40e35a68659ce12775d625164dc337
% rotate Rotate measured image % % This method rotates step wedge measurement. The image can be rotated by % a specified angle (in degrees): % object=rotate(object,theta); % or automatically. % object=rotate(object,'auto'); % Automatic rotation forces the image's longest dimension to be horiztonal, % with increa...
github
SMASHtoolbox/release-master
clean.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/clean.m
795
utf_8
4257a5f676de3a87a3b0ed07b53ea4b4
% clean Remove local artifacts % % This method "cleans" step wedge measurements. Local artifacts are % removed from a specified neighborhood via a median filter. % >> object=clean(object); % default neighborhood is 9x9 pixels % >> object=clean(object,nhood); % Neighborhoods are specified by one or two numbers:...
github
SMASHtoolbox/release-master
configure.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/configure.m
3,789
utf_8
147d2add889e3c0a2dfb1360015b6644
% configure Configure analysis settings % % This method configures settings used by the analysis method. % Configurations are specified by name/value pairs. % >> object=configure(object,name1,value1,...); % Valid settings include: % StepLevels : array of optical densities for the step wedge % StepOffsets ...
github
SMASHtoolbox/release-master
crop.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/crop.m
755
utf_8
4faa88c8aa126ab9d8747477d5c49247
% crop Crop step wedge measurement % % This method crops the measured step wedge image. Cropping can be % selected interactively: % >> object=crop(object); % >> object=crop(object,'manual'); % or by specifying horizontal and vertical ranges. % >> object=crop(object,hrange,vrange); % % NOTE: images should b...
github
SMASHtoolbox/release-master
locate.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/locate.m
4,300
utf_8
b6f1867924a4d8ba4009bc031072e486
% locate Locate step wedge regions % % This method locates constant regions in step wedge measurement. The % number of regions is determined by the StepLevels and StepOffsets % settings. Step transitions are determined by numerical differentiation, % which is controlled by the DerivativeParams setting. HorizontalMar...
github
SMASHtoolbox/release-master
generate.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/generate.m
1,301
utf_8
2d1f05ce7b571d21903fe0914ee697b9
% generate Generate exposure table % % % created February 5, 2016 by Daniel Dolan (Sandia National Laboratories) % function object=generate(object) % generate exposure table N=numel(object.Settings.StepOffsets); OD=sort(object.Settings.StepLevels); OD=OD(end:-1:1); OD=repmat(OD,[N 1]); offset=sort(object.Settings.St...
github
SMASHtoolbox/release-master
analyze.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/analyze.m
7,826
utf_8
766f5646e7468b24549043656fd2f60e
% analyze Analyze step wedge % % This method analyzes the step wedge image to determine how % measured optical density maps to film exposure. % object=analyze(object); % Analysis must be performed before the apply method can be used. % % Step wedge analysis several intermediate steps. % -The user is prompted to...
github
SMASHtoolbox/release-master
create.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/create.m
814
utf_8
04b22e83fdafe2fe8491067de8af1a5a
% This method fills in the Settings and Results property during object % creation function object=create(object) % general set up object.Measurement.GraphicOptions.Title='Step wedge'; % set up settings structure settings=struct(); settings.ID='AI-11-0004'; settings.StepLevels = [0.08 0.20 0.35 0.51 0.64 0.78 0.94...
github
SMASHtoolbox/release-master
restore.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/restore.m
262
utf_8
161c23e829d69555cac1c081862b778e
% restore Restore StepWedge object from an archive function object=restore(data) object=SMASH.ImageAnalysis.StepWedge('-empty'); name=fieldnames(data); for n=1:numel(name) if isprop(object,name{n}) object.(name{n})=data.(name{n}); end end end
github
SMASHtoolbox/release-master
view.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/view.m
2,730
utf_8
d469677b1729583cee9da880d751d5b1
% view Step wedge visualization % % This method visually displays step wedge information. The default % visualization is the measured image. % view(object); % view(object,'measurement'); % Analysis results can also be displayed. % view(object,'results'); % % See also StepWedge, clean, crop, rotate % % % crea...
github
SMASHtoolbox/release-master
tweak.m
.m
release-master/+SMASH/+ImageAnalysis/@StepWedge/tweak.m
1,147
utf_8
460f5b484e1cb31532dc871e49e6db51
% tweak Automatically adjust step offsets % % This method automatically adjusts offset values on a step wedge for % best overlap in the transfer curve. % object=tweak(object); % % See also StepWedge, analyze, clean, crop % % % created February 5, 2016 by Daniel Dolan (Sandia National Laboatories) % function object...
github
SMASHtoolbox/release-master
slice.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/slice.m
5,009
utf_8
1e769baa21d2978ef3e275f109a67bb2
% SLICE Generate slices (lineouts) of ImageGroup objects % % This function slices an Image object at a specified grid location. % >> result=slice(object,coordinate,value); % The input "coordinate" should be 'Grid1' or 'Grid2'; "value" can only be % one location within that grid (at the moment). If these inputs ar...
github
SMASHtoolbox/release-master
rotate.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/rotate.m
3,074
utf_8
46823c8d5937da2a4055e805399d74a3
% ROTATE Rotate an ImageGroup object % % This method rotates the data and grid in an ImageGroup object. % The default call opens an interactive GUI (at the moment, the first image % is always called for the GUI). % object=rotate(object) or object=rotate(object,'gui'); % % Specific calls can also be made: % obje...
github
SMASHtoolbox/release-master
flip.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/flip.m
1,033
utf_8
db232eae5edfc0e060a4ea0c4c9d761b
% FLIP Flip object Data along a specified coordinate % % Usage: % >> object=flip(object,coordinate); % "coordinate" may be 'Grid1' or 'Grid2' % % See also IMAGEGROUP, rotate % % % created November 25, 2013 by Daniel Dolan (Sandia National Laboratories) % modified for ImageGroup February 11, 2016 by Sean Grant (SNL/...
github
SMASHtoolbox/release-master
showSnapshot.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/showSnapshot.m
3,895
utf_8
91fc04f460b05cf38b1af4625530e9c7
% SHOWSNAPSHOT View showing ImageGroup objects with one Image brought to prominance % % This view method brings up one of the Image objects within the ImageGroup % to the primary plot, while the others are contained in a smaller slide % of thumbnails. % % Selecting one of the Images from the thumbnails will bring that...
github
SMASHtoolbox/release-master
differentiate.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/differentiate.m
1,447
utf_8
f2ecbd6db57e10529ed2fc90631710f9
% DIFFERENTIATE calculate ImageGroup derivatives % % This method calculates derivatives of ImageGroup Data. Local % polynomial smoothing (Savitzky-Golay method) is used to reduce the % effects of noise. The coordinate and smoothing parameters % are specified as input arguments. % >> result=derivative(object,coordin...
github
SMASHtoolbox/release-master
import.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/import.m
4,758
utf_8
8a9137a87e1d0341c960e75b2eee0d2b
function object=import(object,data) object.Name='ImageGroup object'; object.GraphicOptions=SMASH.General.GraphicOptions; object.GraphicOptions.Title='ImageGroup object'; object.GraphicOptions.YDir='reverse'; % multiple files if numel(data)>1 for k=1:numel(data) if k==1 object=import(object...
github
SMASHtoolbox/release-master
bin.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/bin.m
1,409
utf_8
8ff159d2aed25170612d180f4374970e
% BIN Reduce ImageGroup resolution by binning % % The same binning is performed on each Image within the ImageGroup. % % Binning is a form of smoothing, where local groups of M x N pixels are % collected into a set of "superpixels" formed by summation over the % original image. The binned object spans the same grid ra...
github
SMASHtoolbox/release-master
shuffle.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/shuffle.m
283
utf_8
2a9975aafd5024ed5f803d2a896cfede
% UNDER CONSTRUCTION % shuffle Shuffle image order % % function out=shuffle(object,index) % manage input valid=1:object.NumberImages; % split and regather temp=cell(1,object.NumberImages); [temp{:}]=split(object); temp=temp(index); out=SMASH.ImageAnalysis.ImageGroup(temp{:}); end
github
SMASHtoolbox/release-master
map.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/map.m
1,656
utf_8
ad5f9e27fe43407352c903c1f25eedd5
%MAP Map ImageGroup coordinate to a new representation % % This method applies a mapping function to one or both coordinate % arrays in ImageGroup object. It is intended for advanced users only. % For simple transformations, use the shift and scale methods. Many data % transformations can be performed directly. % ...
github
SMASHtoolbox/release-master
gather.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/gather.m
2,047
utf_8
f6b4584103c59180bd91435069cac930
% GATHER Combine objects into a ImageGroup % % This method combines ImageGroup (and Image) objects into a new ImageGroup % object with a common Grid. % >> new=gather(object1,object2,...) % % See also ImageGroup, split % % % created January 7, 2015 by Sean Grant (Sandia National Laboratories/UT) % function object=g...
github
SMASHtoolbox/release-master
histogram.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/histogram.m
1,512
utf_8
4c07601ccda61bed8359c0167b936ad4
% HISTOGRAM Histogram of Image data % % This method performs the histogram method on one of the Images within an % ImageGroup. % % This method provide a graphical representation of the distribution of % Image data. Elements in data are sorted into 'nbins' of equally spaced % bins along the x-axis between the minimum...
github
SMASHtoolbox/release-master
lookup.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/lookup.m
759
utf_8
5047750cabb9e0088684646ec2184419
% LOOKUP Look up data values at specific grid locations % % This method returns interpolated data values for specified grid % locations. % >> z=lookup(object,x,y); % % See also ImageGroup, regrid % % % created November 15, 2013 by Daniel Dolan (Sandia National Laboratories) % modified for ImageGroup February 11, 2...
github
SMASHtoolbox/release-master
showMosaic.m
.m
release-master/+SMASH/+ImageAnalysis/@ImageGroup/showMosaic.m
736
utf_8
471fad1cbc1f09b2d9649e0e7bff02f3
% SHOWMOSAIC Standard view showing ImageGroup object as a mosaic of images % % See also ImageGroup, view, showSingle % created January 28, 2016 by Sean Grant (Sandia National Laboratories/UT) % function varargout=showMosaic(object,target) % Handle inputs if (nargin<2) || isempty(target) h=basic_figure; h.axes...