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github | mehta-lab/Instantaneous-PolScope-master | nucleiDetectionProcessGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/nucleiDetectionProcessGUI.m | 7,045 | utf_8 | 9739f37fd2f90691d1951528581099cd | function varargout = nucleiDetectionProcessGUI(varargin)
% nucleiDetectionProcessGUI M-file for nucleiDetectionProcessGUI.fig
% nucleiDetectionProcessGUI, by itself, creates a new nucleiDetectionProcessGUI or raises the existing
% singleton*.
%
% H = nucleiDetectionProcessGUI returns the handle to a new ... |
github | mehta-lab/Instantaneous-PolScope-master | fitGaussians2D.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/fitGaussians2D.m | 7,593 | utf_8 | 513d8a065b094059546a78abd0fda5e7 | % pStruct = fitGaussians2D(img, x, y, A, sigma, c, mode, varargin)
%
% Inputs: img : input image
% x : initial (or fixed) x-positions
% y : initial (or fixed) y-positions
% A : initial (or fixed) amplitudes
% s : initial (or fixed) Gaussian PSF standard deviations
% ... |
github | mehta-lab/Instantaneous-PolScope-master | plusTipGroupAnalysisGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/plusTipGroupAnalysisGUI.m | 8,132 | utf_8 | 40f61ae979266c3cb5c4afed08624583 | function varargout = plusTipGroupAnalysisGUI(varargin)
% plusTipGroupAnalysisGUI M-file for plusTipGroupAnalysisGUI.fig
% plusTipGroupAnalysisGUI, by itself, creates a new plusTipGroupAnalysisGUI or raises the existing
% singleton*.
%
% H = plusTipGroupAnalysisGUI returns the handle to a new plusTipGroup... |
github | mehta-lab/Instantaneous-PolScope-master | userfcn_checkAllMovies.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/userfcn_checkAllMovies.m | 2,874 | utf_8 | a98e78bc49340218e28cbdcf47bf4341 | function userfcn_checkAllMovies(procID, value, handles)
if get(handles.checkbox_all, 'Value')
userData = get(handles.figure1, 'UserData');
for x = setdiff(1:length(userData.MD), userData.id)
% Recalls the userData that may have been updated by the
% checkAllMovies function
%
% Copyright (C... |
github | mehta-lab/Instantaneous-PolScope-master | movieSelectorGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/movieSelectorGUI.m | 21,130 | utf_8 | d0588976a362aa866f6160327e354d6b | function varargout = movieSelectorGUI(varargin)
% MOVIESELECTORGUI M-file for movieSelectorGUI.fig
% MOVIESELECTORGUI, by itself, creates a new MOVIESELECTORGUI or raises the existing
% singleton*.
%
% H = MOVIESELECTORGUI returns the handle to a new MOVIESELECTORGUI or the handle to
% the existing ... |
github | mehta-lab/Instantaneous-PolScope-master | omeroLoginGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/omeroLoginGUI.m | 9,632 | utf_8 | c690ef742750cb9158a55665c3a013d0 | function varargout = omeroLoginGUI(varargin)
% OMEROLOGINGUI MATLAB code for omeroLoginGUI.fig
% OMEROLOGINGUI, by itself, creates a new OMEROLOGINGUI or raises the existing
% singleton*.
%
% H = OMEROLOGINGUI returns the handle to a new OMEROLOGINGUI or the handle to
% the existing singleton*.
%
% ... |
github | mehta-lab/Instantaneous-PolScope-master | rotateXTickLabels.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/rotateXTickLabels.m | 3,735 | utf_8 | 4cb3ba94d05825020b320669d2b73f77 | %ROTATEXTICKLABELS rotates the labels on the x-axis
%
% INPUTS: ha : axis handle of the plot to be modified
% 'Angle' : rotation in degrees. Default: 45
%
% Copyright (C) 2014 LCCB
%
% This file is part of u-track.
%
% u-track is free software: you can redistribute it and/or modify
% it under the terms o... |
github | mehta-lab/Instantaneous-PolScope-master | costMatRandomDirectedSwitchingMotionLinkGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/costMatRandomDirectedSwitchingMotionLinkGUI.m | 10,941 | utf_8 | 5508ccd4d85addedfb517fcd5b4e97d5 | function varargout = costMatRandomDirectedSwitchingMotionLinkGUI(varargin)
% COSTMATRANDOMDIRECTEDSWITCHINGMOTIONLINKGUI M-file for costMatRandomDirectedSwitchingMotionLinkGUI.fig
% COSTMATRANDOMDIRECTEDSWITCHINGMOTIONLINKGUI, by itself, creates a new COSTMATRANDOMDIRECTEDSWITCHINGMOTIONLINKGUI or raises the exist... |
github | mehta-lab/Instantaneous-PolScope-master | discriminationMatrix.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/discriminationMatrix.m | 8,257 | utf_8 | cd1061252d13a1613adf40e4f2cad450 | function compMatrices = discriminationMatrix(dataStructure,testStructure)
%DISCRIMINATIONMATRIX generates discriminationMatrices comparing means and distributions of lists of values in the input data structures
%
% SYNOPSIS compMatrices = discriminationMatrix(dataStructure)
%
% INPUT dataStructure : n-by-1 structure... |
github | mehta-lab/Instantaneous-PolScope-master | cometDetectionProcessGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/cometDetectionProcessGUI.m | 8,543 | utf_8 | 3ef50498580c765caa0521bdab2239cb | function varargout = cometDetectionProcessGUI(varargin)
% cometDetectionProcessGUI M-file for cometDetectionProcessGUI.fig
% cometDetectionProcessGUI, by itself, creates a new cometDetectionProcessGUI or raises the existing
% singleton*.
%
% H = cometDetectionProcessGUI returns the handle to a new cometD... |
github | mehta-lab/Instantaneous-PolScope-master | plusTipCostMatLinearMotionLinkGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/plusTipCostMatLinearMotionLinkGUI.m | 8,348 | utf_8 | ef058bad2e121077bd52e5d1262d257e | function varargout = plusTipCostMatLinearMotionLinkGUI(varargin)
% PLUSTIPCOSTMATLINEARMOTIONLINKGUI M-file for plusTipCostMatLinearMotionLinkGUI.fig
% PLUSTIPCOSTMATLINEARMOTIONLINKGUI, by itself, creates a new PLUSTIPCOSTMATLINEARMOTIONLINKGUI or raises the existing
% singleton*.
%
% H = PLUSTIPCOSTMAT... |
github | mehta-lab/Instantaneous-PolScope-master | trackMSSAnalysis.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/trackMSSAnalysis.m | 107,740 | utf_8 | 4ed3a94d70b08446a794a81bc358b8a9 | function [trackClass,mssSlope,genDiffCoef,scalingPower,normDiffCoef] ...
= trackMSSAnalysis(tracks,probDim,momentOrders,alphaMSS)
%TRACKMSSANALYSIS classifies trajectories based on their moment scaling spectrum
%
% Copyright (C) 2014 LCCB
%
% This file is part of u-track.
%
% u-track is free software: you can red... |
github | mehta-lab/Instantaneous-PolScope-master | movieViewer.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/movieViewer.m | 54,923 | utf_8 | c1ba064b9ee8edd24181bce7b51e7b7a | function mainFig = movieViewer(MO,varargin)
%MOVIEVIEWER creates a graphical interface to display the analysis output of a MovieObject
%
% h = movieViewer(MD)
% movieViewer(MD, [1 2]);
% h = movieViewer(ML, 'movieIndex', 3);
%
% This function reads the components of a MovieObject including all
% drawable anlaysis resu... |
github | mehta-lab/Instantaneous-PolScope-master | extendedColors.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/extendedColors.m | 6,641 | utf_8 | 7c12bb63818f2066ec5edba247205fbf | function color = extendedColors(colorSwitch,drawTable,betaTable)
%extendedColors gives a more extensive set of possible colors than the normal color switch
%
%SYNOPSIS color = extendedColors(colorSwitch, drawTable, betaTable)
%
%INPUT colorSwitch: can be any char from list 'rgbymcadefhijlnpqstuvzkw' or a
% ... |
github | mehta-lab/Instantaneous-PolScope-master | kalmanInitializationGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/kalmanInitializationGUI.m | 8,453 | utf_8 | e224b15b4633cb3c4ced2464d02f99cc | function varargout = kalmanInitializationGUI(varargin)
% KALMANINITIALIZATIONGUI M-file for kalmanInitializationGUI.fig
% KALMANINITIALIZATIONGUI, by itself, creates a new KALMANINITIALIZATIONGUI or raises the existing
% singleton*.
%
% H = KALMANINITIALIZATIONGUI returns the handle to a new KALMANINITIA... |
github | mehta-lab/Instantaneous-PolScope-master | graphViewer.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/graphViewer.m | 12,427 | utf_8 | 95719cc6341e559b786efdbd1ba49c2b | function graphFig = graphViewer(mainFig, graphProc, graphProcId, checkedId)
%GRAPHVIEWER creates a graphical interface to display the graph output of a MovieObject
%
% This function creates a list of checkboxes for all graph processes which
% output can be displayed in a standalone figure. It is called by
% movieViewer... |
github | mehta-lab/Instantaneous-PolScope-master | plusTipCostMatCloseGaps.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/plusTipCostMatCloseGaps.m | 37,213 | utf_8 | 1c55797419c9da78410cc5ee7d41d19b | function [costMat,nonlinkMarker,indxMerge,numMerge,indxSplit,numSplit,...
errFlag] = plusTipCostMatCloseGaps(trackedFeatInfo,...
trackedFeatIndx,trackStartTime,trackEndTime,costMatParam,gapCloseParam,...
kalmanFilterInfo,nnDistLinkedFeat,probDim,movieInfo)
%COSTMATLINEARMOTIONCLOSEGAPS provides a cost matri... |
github | mehta-lab/Instantaneous-PolScope-master | dataPreparationGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/dataPreparationGUI.m | 29,233 | utf_8 | 9fc08eb42e3bf3903fbdb663bd993eed | function varargout = dataPreparationGUI(varargin)
% DATAPREPARATIONGUI M-file for dataPreparationGUI.fig
% DATAPREPARATIONGUI, by itself, creates a new DATAPREPARATIONGUI or raises the existing
% singleton*.
%
% H = DATAPREPARATIONGUI returns the handle to a new DATAPREPARATIONGUI or the handle to
% ... |
github | mehta-lab/Instantaneous-PolScope-master | progressText.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/progressText.m | 5,109 | utf_8 | 169b0a5dad48dba34c507abd1d6a74a3 | function progressText(fractionDone,text)
%PROGRESSTEXT shows progress of a loop as text on the screen
%
% SYNOPSIS: progressText(fractionDone,text)
%
% INPUT fractionDone: fraction of loop done (0-1)
% text (opt): {yourTexthere} : XX% done xx:xx:xx remaining
% Note: text can be changed for every call... |
github | mehta-lab/Instantaneous-PolScope-master | getMultiplicity.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/getMultiplicity.m | 1,713 | utf_8 | 1ff95e962c1943b3db814735b84e7a35 | % [r, udata, sdata] = getMultiplicity(data) returns the occurrences/Multiplicity of the elements of 'data'
%
% Inputs:
% data : n-dimensional input array
%
% Outputs:
% rep : # of occurrences for each element of 'data'
% udata : sorted 1-D array of unique values in 'data'
% sdata : sorte... |
github | mehta-lab/Instantaneous-PolScope-master | readIXMHTDFileM.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/readIXMHTDFileM.m | 3,478 | utf_8 | 27632e6a934397be1be7145c0c4a7d57 | function [wellFlags,siteFlags,wavelengthNames,hcsPlatestack]=readIXMHTDFileM(inputPath)
% locate the HTD file
%
% Copyright (C) 2014 LCCB
%
% This file is part of u-track.
%
% u-track is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the ... |
github | mehta-lab/Instantaneous-PolScope-master | packageGUI_RunFcn.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/packageGUI_RunFcn.m | 9,238 | utf_8 | a58d65798ec676fa520ea6512eb24195 | function packageGUI_RunFcn(hObject,eventdata,handles)
% Run the selected processes in the packageGUI interface
%
% This is a common section of code called by pushbutton_run_Callback
% when user click the "Run" button on package control panels.
%
% Copyright (C) 2014 LCCB
%
% This file is part of u-track.
%
% u-track ... |
github | mehta-lab/Instantaneous-PolScope-master | TracksDisplay.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/TracksDisplay.m | 10,460 | utf_8 | 6d2510617ad57c883a53ffbdabee9435 | classdef TracksDisplay < MovieDataDisplay
%Conrete class for displaying flow
%
% Copyright (C) 2014 LCCB
%
% This file is part of u-track.
%
% u-track is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, eith... |
github | mehta-lab/Instantaneous-PolScope-master | GaussFitND.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/GaussFitND.m | 23,268 | utf_8 | 16617d7108993175ed8823c81033305b | function [parameters,sigmaParameters,Q,chiSquared,degreesOfFreedom,...
residualImage,resAndGauss] = GaussFitND(intensities, coordList, ...
fitParameters, parameters, isNormed, fitOptions)
%GAUSSFITND fits one or several N-D Gaussians to an input intensity distribution
%
% SYNOPSIS: [parameters,sigmaParameters,Q... |
github | mehta-lab/Instantaneous-PolScope-master | fitGaussianMixtures2D.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/fitGaussianMixtures2D.m | 9,530 | utf_8 | d8f05a5e90ee9768227c3838d6aed570 | % pStruct = fitGaussianMixtures2D(img, x, y, A, sigma, c, mode, varargin)
%
% Inputs: img : input image
% x : initial (or fixed) x-positions
% y : initial (or fixed) y-positions
% A : initial (or fixed) amplitudes
% s : initial (or fixed) Gaussian PSF standard deviation... |
github | mehta-lab/Instantaneous-PolScope-master | abstractProcessGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/abstractProcessGUI.m | 6,533 | utf_8 | bfb6f0a72786910f9b8d6fae847543b7 | function varargout = abstractProcessGUI(varargin)
%ABSTRACTPROCESSGUI M-file for abstractProcessGUI.fig
% ABSTRACTPROCESSGUI, by itself, creates a new ABSTRACTPROCESSGUI or raises the existing
% singleton*.
%
% H = ABSTRACTPROCESSGUI returns the handle to a new ABSTRACTPROCESSGUI or the handle to
% ... |
github | mehta-lab/Instantaneous-PolScope-master | naFromLensID.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/naFromLensID.m | 3,469 | utf_8 | 2697834078098bf83f70f4ebdbbe386e | function [NA,mag] = naFromLensID(lensID,ask)
%NAFROMLENSID is a lookup table to find the NA for a given lensID
%
% SYNOPSIS [NA,mag] = naFromLensID(lensID,ask)
%
% INPUT lensID : ID of the lens according to deltaVision
% ask : Whether or not to ask for lensID if not found in list
% ... |
github | mehta-lab/Instantaneous-PolScope-master | pointSourceDetectionProcessGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/pointSourceDetectionProcessGUI.m | 28,298 | utf_8 | 342372247e7d42dfc0ea2f0a7e5af5f5 | function varargout = pointSourceDetectionProcessGUI(varargin)
% anisoGaussianDetectionProcessGUI M-file for anisoGaussianDetectionProcessGUI.fig
% anisoGaussianDetectionProcessGUI, by itself, creates a new anisoGaussianDetectionProcessGUI or raises the existing
% singleton*.
%
% H = anisoGaussianDetectio... |
github | mehta-lab/Instantaneous-PolScope-master | packageGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/packageGUI.m | 10,583 | utf_8 | 3d8400f8615c3cd846444d403f0378cb | function varargout = packageGUI(varargin)
% PACKAGEGUI M-file for packageGUI.fig
% PACKAGEGUI, by itself, creates a new PACKAGEGUI or raises the existing
% singleton*.
%
% H = PACKAGEGUI returns the handle to a new PACKAGEGUI or the handle to
% the existing singleton*.
%
% PACKAGEGUI('CALLBACK'... |
github | mehta-lab/Instantaneous-PolScope-master | getGaussianPSFsigma.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/getGaussianPSFsigma.m | 3,287 | utf_8 | 1bc6d7a33a0c071253b338643cab911f | %[sigma] = getGaussianPSFsigma(NA, M, pixelSize, lambda) returns the s.d. of the Gaussian PSF approximation
%
% Inputs NA : numerical aperture of the objective
% M : magnification of the objective
% pixelSize : physical pixel size of the CCD in [m]
% lambda : emiss... |
github | mehta-lab/Instantaneous-PolScope-master | addMovieROIGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/addMovieROIGUI.m | 11,173 | utf_8 | 99046aa8e67f15ba9f3beb2966033c0e | function varargout = addMovieROIGUI(varargin)
% addMovieROIGUI M-file for addMovieROIGUI.fig
% addMovieROIGUI, by itself, creates a new addMovieROIGUI or raises the existing
% singleton*.
%
% H = addMovieROIGUI returns the handle to a new addMovieROIGUI or the handle to
% the existing singleton*.
%
... |
github | mehta-lab/Instantaneous-PolScope-master | trackingProcessGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/trackingProcessGUI.m | 16,305 | utf_8 | 55317020c14298cee6e4d87fb6d56a40 | function varargout = trackingProcessGUI(varargin)
% TRACKINGPROCESSGUI M-file for trackingProcessGUI.fig
% TRACKINGPROCESSGUI, by itself, creates a new TRACKINGPROCESSGUI or raises the existing
% singleton*.
%
% H = TRACKINGPROCESSGUI returns the handle to a new TRACKINGPROCESSGUI or the handle to
% ... |
github | mehta-lab/Instantaneous-PolScope-master | packageGUI_OpeningFcn.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/packageGUI_OpeningFcn.m | 14,244 | utf_8 | 6220495595ec1b14ec4939661efd30d0 | function packageGUI_OpeningFcn(hObject,eventdata,handles,packageName,varargin)
% Callback called at the opening of packageGUI
%
% packageGUI_OpeningFcn(packageName,MD) MD: MovieData object
%
%
% Copyright (C) 2014 LCCB
%
% This file is part of u-track.
%
% u-track is free software: you can redistribute it and/or mo... |
github | mehta-lab/Instantaneous-PolScope-master | postProcessMovieComets.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/postProcessMovieComets.m | 6,990 | utf_8 | 0ac022ca6d0a09fb798c3f1ef7dab229 | function postProcessMovieComets(movieData,varargin)
% Track features in a movie which has been processed by a detection method
%
% Sebastien Besson, Feb 2012
%
% Copyright (C) 2014 LCCB
%
% This file is part of u-track.
%
% u-track is free software: you can redistribute it and/or modify
% it under the terms of the GN... |
github | mehta-lab/Instantaneous-PolScope-master | omeroDataSelectionGUI.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/omeroDataSelectionGUI.m | 13,227 | utf_8 | fc19b4145a74fe363555711ba2415a13 | function varargout = omeroDataSelectionGUI(varargin)
% OMERODATASELECTIONGUI MATLAB code for omeroDataSelectionGUI.fig
% OMERODATASELECTIONGUI, by itself, creates a new OMERODATASELECTIONGUI or raises the existing
% singleton*.
%
% H = OMERODATASELECTIONGUI returns the handle to a new OMERODATASELECTIONG... |
github | mehta-lab/Instantaneous-PolScope-master | bfCheckJavaPath.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/bioformats/bfCheckJavaPath.m | 3,237 | utf_8 | a8204822a04672d090a16a10d4e3bf12 | function [status, version] = bfCheckJavaPath(varargin)
% bfCheckJavaPath check Bio-Formats is included in the Java class path
%
% SYNOPSIS bfCheckJavaPath()
% status = bfCheckJavaPath(autoloadBioFormats)
% [status, version] = bfCheckJavaPath()
%
% Input
%
% autoloadBioFormats - Optional. A boole... |
github | mehta-lab/Instantaneous-PolScope-master | createMinimalOMEXMLMetadata.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/bioformats/createMinimalOMEXMLMetadata.m | 3,882 | utf_8 | 5fca909f328b98da9546c3bbcb5eaefa | function metadata = createMinimalOMEXMLMetadata(I, varargin)
% CREATEMINIMALOMEXMLMETADATA Create an OME-XML metadata object from an input matrix
%
% createMinimalOMEXMLMetadata(I) creates an OME-XML metadata object from
% an input 5-D array. Minimal metadata information is stored such as the
% pixels dimensio... |
github | mehta-lab/Instantaneous-PolScope-master | bfsave.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/u-track-2.1.3/software/bioformats/bfsave.m | 4,860 | utf_8 | 4a3e7594e4db8454876906cad376fb5d | function bfsave(I, outputPath, varargin)
% BFSAVE Save a 5D matrix into an OME-TIFF using Bio-Formats library
%
% bfsave(I, outputPath) writes the input 5D matrix into a new file
% specified by outputPath.
%
% bfsave(I, outputPath, dimensionOrder) specifies the dimension order of
% the input matrix. Default... |
github | mehta-lab/Instantaneous-PolScope-master | strsetmatch.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/strsetmatch.m | 928 | utf_8 | 73f5541ad337bbbc7179cf71004b7062 | % Indicator of which elements of a universal set are in a particular set.
%
% Input arguments:
% strset:
% the particular set as a cell array of strings
% struniversal:
% the universal set as a cell array of strings, all elements in the
% particular set are expected to be in the universal set
%
% Output argume... |
github | mehta-lab/Instantaneous-PolScope-master | helptext.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/helptext.m | 1,593 | utf_8 | bd49205fc50aeae5a909c8b58a47be6d | % Help text associated with a function, class, property or method.
% Spaces are removed as necessary.
%
% See also: helpdialog
% Copyright 2008-2010 Levente Hunyadi
function text = helptext(obj)
if ischar(obj)
text = gethelptext(obj);
else
text = gethelptext(class(obj));
end
text = texttrim(text);
function t... |
github | mehta-lab/Instantaneous-PolScope-master | javaclass.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/javaclass.m | 3,635 | utf_8 | 7165e1fd27bd4f5898132023dc04662b | % Return java.lang.Class instance for MatLab type.
%
% Input arguments:
% mtype:
% the MatLab name of the type for which to return the java.lang.Class
% instance
% ndims:
% the number of dimensions of the MatLab data type
%
% See also: class
% Copyright 2009-2010 Levente Hunyadi
function jclass = javaclass(mt... |
github | mehta-lab/Instantaneous-PolScope-master | helpdialog.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/helpdialog.m | 3,397 | utf_8 | f16f23c1b608a247bc5298f5ebc6d321 | % Displays a dialog to give help information on an object.
%
% Examples:
% helpdialog char
% gives information of character arrays
% helpdialog plot
% gives help on the plot command
% helpdialog(obj)
% gives help on the MatLab object obj
%
% See also: helptext, msgbox
% Copyright 2008-2010 Levente Hunyadi
fun... |
github | mehta-lab/Instantaneous-PolScope-master | getdependentproperties.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/getdependentproperties.m | 907 | utf_8 | 5f87bb7115d9bcacd8556d89a4492c44 | % Publicly accessible dependent properties of an object.
%
% See also: meta.property
% Copyright 2010 Levente Hunyadi
function dependent = getdependentproperties(obj)
dependent = {};
if isstruct(obj) % structures have no dependent properties
return;
end
try
clazz = metaclass(obj);
catch %#ok<CTCH>
retur... |
github | mehta-lab/Instantaneous-PolScope-master | strjoin.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/strjoin.m | 938 | utf_8 | 63425068d4fd2fd0543aa9e5b46eca84 | % Concatenates a cell array of strings.
%
% Input arguments:
% adjoiner:
% string separating each neighboring element
% strings:
% a cell array of strings to join
%
% See also: strsplit, cell2mat
% Copyright 2008-2009 Levente Hunyadi
function string = strjoin(adjoiner, strings)
validateattributes(adjoiner, {'ch... |
github | mehta-lab/Instantaneous-PolScope-master | strsplit.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/strsplit.m | 553 | utf_8 | 81fa1c544a57b6a796400f39aedf3d44 | % Splits a string into a cell array of strings.
%
% Input arguments:
% string:
% a string to split into a cell array
% adjoiner:
% string separating each neighboring element
%
% See also: strjoin
% Copyright 2008-2009 Levente Hunyadi
function strings = strsplit(string, adjoiner)
if nargin < 2
adjoiner = spr... |
github | mehta-lab/Instantaneous-PolScope-master | nestedfetch.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/nestedfetch.m | 1,000 | utf_8 | 1f3b58597c8ee6879bc2650defb0799d | % Fetches the value of the named property of an object or structure.
% This function can deal with nested properties.
%
% Input arguments:
% obj:
% the handle or value object the value should be assigned to
% name:
% a property name with dot (.) separating property names at
% different hierarchy levels
% value... |
github | mehta-lab/Instantaneous-PolScope-master | findobjuser.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/findobjuser.m | 1,186 | utf_8 | 7bd275f50be4d4907288de44fab8fade | % Find handle graphics object with user data check.
% Retrieves those handle graphics objects (HGOs) that have the specified
% Tag property and whose UserData property satisfies the given predicate.
%
% Input arguments:
% fcn:
% a predicate (a function that returns a logical value) to test against
% the HGO's Use... |
github | mehta-lab/Instantaneous-PolScope-master | javaStringArray.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/javaStringArray.m | 628 | utf_8 | fe0389e3b0d1933d49c1a78c416a279c | % Converts a MatLab cell array of strings into a java.lang.String array.
%
% Input arguments:
% str:
% a cell array of strings (i.e. a cell array of char row vectors)
%
% Output arguments:
% arr:
% a java.lang.String array instance (i.e. java.lang.String[])
%
% See also: javaArray
% Copyright 2009-2010 Levente H... |
github | mehta-lab/Instantaneous-PolScope-master | var2str.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/var2str.m | 441 | utf_8 | 5588acb0d18dcfac8183caf10a3b5675 | % Textual representation of any MatLab value.
% Copyright 2009 Levente Hunyadi
function s = var2str(value)
if islogical(value) || isnumeric(value)
s = num2str(value);
elseif ischar(value) && isvector(value)
s = reshape(value, 1, numel(value));
elseif isjava(value)
s = char(value); % calls java.lang.Objec... |
github | mehta-lab/Instantaneous-PolScope-master | getclassfield.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/getclassfield.m | 376 | utf_8 | e3b87866af8da4dd40243e750a7e53f6 | % Field value of each object in an array or cell array.
%
% See also: getfield
% Copyright 2010 Levente Hunyadi
function values = getclassfield(objects, field)
values = cell(size(objects));
if iscell(objects)
for k = 1 : numel(values)
values{k} = objects{k}.(field);
end
else
for k = 1 : numel(valu... |
github | mehta-lab/Instantaneous-PolScope-master | arrayfilter.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/arrayfilter.m | 488 | utf_8 | a2649b876169e3d850372917e57a8b68 | % Filter elements of array that meet a condition.
% Copyright 2010 Levente Hunyadi
function array = arrayfilter(fun, array)
validateattributes(fun, {'function_handle'}, {'scalar'});
if isobject(array)
filter = false(size(array));
for k = 1 : numel(filter)
filter(k) = fun(array(k));
end
else
f... |
github | mehta-lab/Instantaneous-PolScope-master | constructor.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/constructor.m | 2,078 | utf_8 | c67e647ec8055710896666c9e83b45e0 | % Sets public properties of a MatLab object using a name-value list.
% Properties are traversed in the order they occur in the class definition.
% Copyright 2008-2009 Levente Hunyadi
function obj = constructor(obj, varargin)
assert(isobject(obj), ...
'Function operates on MatLab new-style objects only.');
if nar... |
github | mehta-lab/Instantaneous-PolScope-master | nestedassign.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/nestedassign.m | 1,457 | utf_8 | 12d661bb4df3c64a0707a06f7e3e6afc | % Assigns the given value to the named property of an object or structure.
% This function can deal with nested properties.
%
% Input arguments:
% obj:
% the structure, handle or value object the value should be assigned to
% name:
% a property name with dot (.) separating property names at
% different hierarc... |
github | mehta-lab/Instantaneous-PolScope-master | javaArrayList.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/PropertyGrid/javaArrayList.m | 647 | utf_8 | f2dfbe065497f86c285230bc35bf381c | % Converts a MatLab array into a java.util.ArrayList.
%
% Input arguments:
% array:
% a MatLab row or column vector (with elements of any type)
%
% Output arguments:
% list:
% a java.util.ArrayList instance
%
% See also: javaArray
% Copyright 2010 Levente Hunyadi
function list = javaArrayList(array)
assert(isve... |
github | mehta-lab/Instantaneous-PolScope-master | tracking.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/GUI Layout Toolbox 2.3.1/layout/+uix/tracking.m | 5,760 | utf_8 | 0a5cc1ec12e0f3d0ff2fe76e2c686f9a | function varargout = tracking( varargin )
%tracking Track anonymized usage data
%
% tracking(p,v,id) tracks usage to the property p for the product version
% v and identifier id. No personally identifiable information is tracked.
%
% r = tracking(...) returns the server response r, for debugging purposes.
%
% tra... |
github | mehta-lab/Instantaneous-PolScope-master | Text.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/GUI Layout Toolbox 2.3.1/layout/+uix/Text.m | 14,906 | utf_8 | c37ac7f47e68e43733564dd25304a3dc | classdef Text < matlab.mixin.SetGet
%uix.Text Text control
%
% t = uix.Text(p1,v1,p2,v2,...) constructs a text control and sets
% parameter p1 to value v1, etc.
%
% A text control adds functionality to a uicontrol of Style text:
% * Set VerticalAlignment to 'top', 'middle' or 'bottom'
... |
github | mehta-lab/Instantaneous-PolScope-master | loadIcon.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/GUI Layout Toolbox 2.3.1/layout/+uix/loadIcon.m | 3,127 | utf_8 | 38f0cd83643a54e6cdfb1bf63a443c44 | function cdata = loadIcon( filename, bgcol )
%loadIcon Load an icon and set the transparent color
%
% cdata = uix.loadIcon(filename) loads the icon from the specified
% filename. For PNG files with transparency, the transparent pixels are
% set to NaN. For other files, pixels that are pure green are set to
% ... |
github | mehta-lab/Instantaneous-PolScope-master | ChildObserver.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/GUI Layout Toolbox 2.3.1/layout/+uix/ChildObserver.m | 8,831 | utf_8 | cc3553df755d4fc3dd119136aa17fe95 | classdef ( Hidden, Sealed ) ChildObserver < handle
%uix.ChildObserver Child observer
%
% co = uix.ChildObserver(o) creates a child observer for the graphics
% object o. A child observer raises events when objects are added to
% and removed from the property Children of o.
%
% See also:... |
github | mehta-lab/Instantaneous-PolScope-master | Empty.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/GUI Layout Toolbox 2.3.1/layout/+uix/Empty.m | 2,629 | utf_8 | baef0f4e364966ead829a37218b4ad5d | function obj = Empty( varargin )
%uix.Empty Create an empty space
%
% obj = uix.Empty() creates an empty space that can be used to add gaps
% between elements in layouts.
%
% obj = uix.Empty(param,value,...) also sets one or more property
% values.
%
% See the <a href="matlab:doc uix.Empty">documentation</a>... |
github | mehta-lab/Instantaneous-PolScope-master | guideApp.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/GUI Layout Toolbox 2.3.1/layoutdoc/Examples/guideApp.m | 4,073 | utf_8 | f1e03beaed00662522eda571d8c8f409 | function varargout = guideApp(varargin)
% GUIDEAPP MATLAB code for guideApp.fig
% GUIDEAPP, by itself, creates a new GUIDEAPP or raises the existing
% singleton*.
%
% H = GUIDEAPP returns the handle to a new GUIDEAPP or the handle to
% the existing singleton*.
%
% GUIDEAPP('CALLBACK',hObject,ev... |
github | mehta-lab/Instantaneous-PolScope-master | colorspace.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/colorspace/colorspace.m | 16,178 | utf_8 | 2ca0aee9ae4d0f5c12a7028c45ef2b8d | function varargout = colorspace(Conversion,varargin)
%COLORSPACE Transform a color image between color representations.
% B = COLORSPACE(S,A) transforms the color representation of image A
% where S is a string specifying the conversion. The input array A
% should be a real full double array of size Mx3 or MxN... |
github | mehta-lab/Instantaneous-PolScope-master | display.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/panel_2.10/@panel/display.m | 685 | utf_8 | d40ca5f83673dfa9d60822d651eca66f | function display(p)
% disp([10 'panel: (' num2str(p.fig) ', ' int2str(p.id) ')' 10])
disp([10 '(Panel Object)'])
if isnumeric(p.fig) && isscalar(p.fig) && ishandle(p.fig) && strcmp(get(p.fig,'type'), 'figure')
[P, panelroot] = getpanel(p);
sect('Figure Properties');
disp(panelroot)
sect('Panel Logical Proper... |
github | mehta-lab/Instantaneous-PolScope-master | subrender.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/contrib/panel_2.10/@panel/private/subrender.m | 7,009 | utf_8 | a6638f6f21594918bd93a00354a88a44 |
%% SUBRENDER
function subrender(p, P, renderer)
% get specific margin
if P.panel.axis
margin = subsref(p, 'axismargin');
else
margin = subsref(p, 'parentmargin');
end
% root has extra margin
if ~P.panel.parent
rootmargin = subsref(p, 'rootmargin');
margin = margin + rootmargin;
end
% get fractional margin
s... |
github | mehta-lab/Instantaneous-PolScope-master | overlayPositionOrientationV2.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/TrackingScripts/overlayPositionOrientationV2.m | 9,961 | utf_8 | 63d7fa169443d4cb324fd1510f2d5332 | function [movOrient,LineXstart,LineYstart,LineXend,LineYend]=overlayPositionOrientationV2(xPart,yPart,anisoPart,orientPart,intPart,drawParticlesOn,varargin)
% [movOrient,hAxisOverlay,hAxisIntensity,xstart,ystart,xend,yend]=overlayPositionOrientation(xPart,yPart,anisoPart,orientPart,intPart,drawParticlesOn,varargin)
% S... |
github | mehta-lab/Instantaneous-PolScope-master | checkRTFP.m | .m | Instantaneous-PolScope-master/MehtaetalPNAS2016/@instantPolGUI/checkRTFP.m | 6,894 | utf_8 | b431e574bf27bbccf599756a0860707a | function checkRTFP(me,eventType,I0in,I45in,I90in,I135in,Anisotropyin,Orientationin,Averagein,varargin)
persistent I0 I45 I90 I135 Anisotropy Orientation Average;
% If error occurs in the very first call to the funciton (when file is selected), these persistent
% variables are not set.
% Also when this file is modifie... |
github | CheckPointSW/labeless-master | member_pointer_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/member_pointer_runme.m | 922 | utf_8 | 5d65cb03abdda4efc4dd89ee739e27b6 | # Example using pointers to member functions
member_pointer
function check(what,expected,actual)
if (expected != actual)
error ("Failed: %s, Expected: %f, Actual: %f",what,expected,actual);
endif
end
# Get the pointers
area_pt = areapt;
perim_pt = perimeterpt;
# Create some objects
s = Square(10);
# Do s... |
github | CheckPointSW/labeless-master | director_basic_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/director_basic_runme.m | 1,734 | utf_8 | b6b47f50cd7b79dce886ca9a71659d86 | director_basic
function self=OctFoo()
global director_basic;
self=subclass(director_basic.Foo());
self.ping=@OctFoo_ping;
end
function string=OctFoo_ping(self)
string="OctFoo::ping()";
end
a = OctFoo();
if (!strcmp(a.ping(),"OctFoo::ping()"))
error(a.ping())
endif
if (!strcmp(a.pong(),"Foo::pong();OctFoo... |
github | CheckPointSW/labeless-master | director_string_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/director_string_runme.m | 456 | utf_8 | 253061c50e9f69d1d7f90b0bf7c64b21 | director_string
function out=get_first(self)
out = strcat(self.A.get_first()," world!");
end
function process_text(self,string)
self.A.process_text(string);
self.smem = "hello";
end
B=@(string) subclass(A(string),'get_first',@get_first,'process_text',@process_text);
b = B("hello");
b.get(0);
if (!strcmp(b.ge... |
github | CheckPointSW/labeless-master | voidtest_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/voidtest_runme.m | 489 | utf_8 | e8f18ed9dcf24d5fabce570c881dde59 | voidtest
voidtest.globalfunc();
f = voidtest.Foo();
f.memberfunc();
voidtest.Foo_staticmemberfunc();
function fvoid()
end
try
a = f.memberfunc();
catch
end_try_catch
try
a = fvoid();
catch
end_try_catch
v1 = voidtest.vfunc1(f);
v2 = voidtest.vfunc2(f);
if (swig_this(v1) != swig_this(v2))
error
endif
v3 =... |
github | CheckPointSW/labeless-master | director_detect_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/director_detect_runme.m | 659 | utf_8 | ed20d6fcffc7c81a27de292afc945862 | director_detect
global MyBar=@(val=2) \
subclass(director_detect.Bar(),'val',val,@get_value,@get_class,@just_do_it,@clone);
function val=get_value(self)
self.val = self.val + 1;
val = self.val;
end
function ptr=get_class(self)
global director_detect;
self.val = self.val + 1;
ptr=director_detect.A();... |
github | CheckPointSW/labeless-master | preproc_constants_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/preproc_constants_runme.m | 533 | utf_8 | 917a1bdadc03d5ce92d7468e9c4c81b2 | preproc_constants
assert(CONST_INT1, 10)
assert(CONST_DOUBLE3, 12.3)
assert(CONST_BOOL1, true)
assert(CONST_CHAR, 'x')
assert(CONST_STRING1, "const string")
# Test global constants can be seen within functions
function test_global()
global CONST_INT1
global CONST_DOUBLE3
global CONST_BOOL1
global CO... |
github | CheckPointSW/labeless-master | director_classic_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/director_classic_runme.m | 2,411 | utf_8 | 168e96aff7298695046a230adc01e911 | director_classic
TargetLangPerson=@() subclass(Person(),'id',@(self) "TargetLangPerson");
TargetLangChild=@() subclass(Child(),'id',@(self) "TargetLangChild");
TargetLangGrandChild=@() subclass(GrandChild(),'id',@(self) "TargetLangGrandChild");
# Semis - don't override id() in target language
TargetLangSemiPerson=@()... |
github | CheckPointSW/labeless-master | li_std_vector_enum_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/li_std_vector_enum_runme.m | 376 | utf_8 | 3915e1d2851c46706f5ee2878da627c4 | li_std_vector_enum
function check(a, b)
if (a != b)
error("incorrect match");
endif
end
ev = EnumVector();
check(ev.nums(0), 10);
check(ev.nums(1), 20);
check(ev.nums(2), 30);
it = ev.nums.begin();
v = it.value();
check(v, 10);
it.next();
v = it.value();
check(v, 20);
#expected = 10
#ev.nums.each do|val|
... |
github | CheckPointSW/labeless-master | exception_order_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/exception_order_runme.m | 898 | utf_8 | a9559c0998ed1178eef715d5314f32e1 | exception_order
function check_lasterror(expected)
if (!strcmp(lasterror.message, expected))
# Take account of older versions prefixing with "error: " and adding a newline at the end
if (!strcmp(regexprep(lasterror.message, 'error: (.*)\n$', '$1'), expected))
error(["Bad exception order. Expected: \"",... |
github | CheckPointSW/labeless-master | director_abstract_runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/test-suite/octave/director_abstract_runme.m | 993 | utf_8 | 010e2a8f3e12a660ec6f6b89f629f5fd | director_abstract
MyFoo=@() subclass(director_abstract.Foo(),@ping);
function out=ping(self)
out="MyFoo::ping()";
end
a = MyFoo();
if (!strcmp(a.ping(),"MyFoo::ping()"))
error(a.ping())
endif
if (!strcmp(a.pong(),"Foo::pong();MyFoo::ping()"))
error(a.pong())
endif
MyExample1=@() subclass(director_abstract.... |
github | CheckPointSW/labeless-master | runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/octave/class/runme.m | 1,017 | utf_8 | 402733d5ff5c5f0ec147a476914de00a | # file: runme.m
# This file illustrates the proxy class C++ interface generated
# by SWIG.
swigexample
# ----- Object creation -----
printf("Creating some objects:\n");
c = swigexample.Circle(10)
s = swigexample.Square(10)
# ----- Access a static member -----
printf("\nA total of %i shapes were created\n", swigex... |
github | CheckPointSW/labeless-master | runme.m | .m | labeless-master/3rdparty/swigwin-3.0.2/Examples/octave/module_load/runme.m | 1,662 | utf_8 | 383122eccc45eeee51c841b36eab5129 | # file: runme_args.m
# load module
clear all;
swigexample;
assert(cvar.ivar == ifunc);
assert(exist("swigexample","var"));
clear all
swigexample;
assert(cvar.ivar == ifunc);
assert(exist("swigexample","var"));
clear all
# load module in a function globally before base context
clear all;
function testme
swigexample;... |
github | fquitin/energy_detection_system-master | read_int_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/read_int_binary.m | 1,206 | utf_8 | ad5f11d74e447e5a86fc682db3eba8f3 | %
% Copyright 2001,2002 Free Software Foundation, Inc.
%
% This file is part of GNU Radio
%
% GNU Radio is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3, or (at your option)
% any later version... |
github | fquitin/energy_detection_system-master | read_short_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/read_short_binary.m | 1,203 | utf_8 | 074f9adf08a57572fff63418fe78ee9b | %
% Copyright 2001 Free Software Foundation, Inc.
%
% This file is part of GNU Radio
%
% GNU Radio is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3, or (at your option)
% any later version.
%
%... |
github | fquitin/energy_detection_system-master | write_char_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/write_char_binary.m | 314 | utf_8 | 7d86f60d5b9f759312a2bb9f087e02f4 | %
%
% Adam Gannon - 2014
function v = write_char_binary (data, filename)
% usage: write_char_binary (data, filename)
%
% open filename and write data to it as 8 bit chars
%
f = fopen (filename, 'wb');
if (f < 0)
v = 0;
else
v = fwrite (f, data, 'char');
fclose (f);
end
end
|
github | fquitin/energy_detection_system-master | read_char_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/read_char_binary.m | 1,193 | utf_8 | 2533746db69e6dbbb238d70666393254 | %
% Copyright 2001 Free Software Foundation, Inc.
%
% This file is part of GNU Radio
%
% GNU Radio is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3, or (at your option)
% any later version.
%
%... |
github | fquitin/energy_detection_system-master | read_byte_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/read_byte_binary.m | 1,185 | utf_8 | e27639238ea59610b43bddd1a5800856 | %
% Copyright 2001 Free Software Foundation, Inc.
%
% This file is part of GNU Radio
%
% GNU Radio is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3, or (at your option)
% any later version.
%
%... |
github | fquitin/energy_detection_system-master | write_int_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/write_int_binary.m | 315 | utf_8 | f9d2275d36cf037a6885986b114b9f61 | %
%
% Adam Gannon - 2014
function v = write_int_binary (data, filename)
% usage: write_int_binary (data, filename)
%
% open filename and write data to it as signed integers
%
f = fopen (filename, 'wb');
if (f < 0)
v = 0;
else
v = fwrite (f, data, 'int');
fclose (f);
end
end
|
github | fquitin/energy_detection_system-master | read_complex_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/read_complex_binary.m | 1,304 | utf_8 | 66da98f4761fa283039a67c2ce01c499 | %
% Copyright 2001 Free Software Foundation, Inc.
%
% This file is part of GNU Radio
%
% GNU Radio is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3, or (at your option)
% any later version.
%
%... |
github | fquitin/energy_detection_system-master | write_short_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/write_short_binary.m | 327 | utf_8 | 45a92300b9500b033e43717fa3c83aa2 | %
%
% Adam Gannon - 2014
function v = write_short_binary (data, filename)
% usage: write_short_binary (data, filename)
%
% open filename and write data to it as signed short integers
%
f = fopen (filename, 'wb');
if (f < 0)
v = 0;
else
v = fwrite (f, data, 'short');
fclose (f);
en... |
github | fquitin/energy_detection_system-master | write_float_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/write_float_binary.m | 1,072 | utf_8 | e5192508304227befdf8383e37067596 | %
% Copyright 2001 Free Software Foundation, Inc.
%
% This file is part of GNU Radio
%
% GNU Radio is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3, or (at your option)
% any later version.
%
%... |
github | fquitin/energy_detection_system-master | write_complex_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/write_complex_binary.m | 1,224 | utf_8 | 644708692f6c221368c5bb62ca270819 | %
% Copyright 2001 Free Software Foundation, Inc.
%
% This file is part of GNU Radio
%
% GNU Radio is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2, or (at your option)
% any later version.
%... |
github | fquitin/energy_detection_system-master | plotdat.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/plotdat.m | 258 | utf_8 | 9d31ac3cefebeb526ef71988ce083bbd | %
%
% Plot a complex vector versus its index (default is I vs Q)
function handle = plotdat(vec,plotIm)
if (nargin<2)
plotIm = false;
end
handle = figure;
if (plotIm)
plot(1:length(vec),imag(vec));
else
plot(1:length(vec),real(vec));
end
end |
github | fquitin/energy_detection_system-master | read_float_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/read_float_binary.m | 1,195 | utf_8 | 5bd133b4dc06135dd9a04eeb712c75aa | %
% Copyright 2001 Free Software Foundation, Inc.
%
% This file is part of GNU Radio
%
% GNU Radio is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3, or (at your option)
% any later version.
%
%... |
github | fquitin/energy_detection_system-master | read_complex_binary_2.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/read_complex_binary_2.m | 1,306 | utf_8 | 1c70e8baea6a2f3193e8337dccd3ea24 | %
% Copyright 2001 Free Software Foundation, Inc.
%
% This file is part of GNU Radio
%
% GNU Radio is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3, or (at your option)
% any later version.
%
%... |
github | fquitin/energy_detection_system-master | write_byte_binary.m | .m | energy_detection_system-master/Matlab/matlab_utils-master/write_byte_binary.m | 314 | utf_8 | e0af62efb365031dec60b7b849b2675d | %
%
% Adam Gannon - 2014
function v = write_byte_binary (data, filename)
% usage: write_byte_binary (data, filename)
%
% open filename and write data to it as 8 bit unsigned ints
%
f = fopen (filename, 'wb');
if (f < 0)
v = 0;
else
v = fwrite (f, data);
fclose (f);
end
end
|
github | CohenBerkeleyLab/WRF_Utils-master | wrf_winds_transform.m | .m | WRF_Utils-master/wrf_winds_transform.m | 2,001 | utf_8 | 7b27a9803d7f086b8483ce948779a4b0 | function [ Ue, Ve ] = wrf_winds_transform( U, V, COSALPHA, SINALPHA )
% WRF_WINDS_TRANSFORM Transform winds to earth-relative orientation
% Function that will correctly calculate U and V wind components of
% winds given the COSALPHA and SINALPHA variables from WRF output,
% handling the conversion from grid-relat... |
github | CohenBerkeleyLab/WRF_Utils-master | compute_wrf_trop_columns.m | .m | WRF_Utils-master/compute_wrf_trop_columns.m | 3,101 | utf_8 | 117f2ba49b7a0816863ea741dce10310 | function [ trop_no2 ] = compute_wrf_trop_columns( wrf_filename, integration_mode, tropopause )
%COMPUTE_WRF_TROP_COLUMNS Calculate WRF-Chem tropospheric NO2 columns
% TROP_NO2 = COMPUTE_WRF_TROP_COLUMNS( WRF_FILENAME ) calculates NO2
% tropospheric columns in molec./cm^3 for WRF_FILENAME (a path to a WRF
% file t... |
github | CohenBerkeleyLab/WRF_Utils-master | get_wrf_array_size.m | .m | WRF_Utils-master/get_wrf_array_size.m | 1,452 | utf_8 | 871dea0d25f6d15df728782fee8df7da | function [ sz ] = get_wrf_array_size( wrffile )
%GET_WRF_ARRAY_SIZE Gets unstaggered array sizes in WRF output file
% SZ = GET_WRF_ARRAY_SIZE( WRFFILE ) Returns a 1x4 vector SZ which
% contains the length of unstagger WRF arrays in the given file along the
% west_east, south_north, bottom_top, and Time dimensions... |
github | CohenBerkeleyLab/WRF_Utils-master | compare_wrfout.m | .m | WRF_Utils-master/compare_wrfout.m | 7,250 | utf_8 | de7b66d8d6da0c7d432ea37eed66a9eb | function [ ] = compare_wrfout( old_dir, new_dir, varargin )
%COMPARE_WRFOUT Compare several variables from two sets of WRF-Chem output
% COMPARE_WRFOUT( OLD_DIR, NEW_DIR ) Reads wrfout_d* files from OLD_DIR
% and NEW_DIR and plots the average absolute and percent difference in
% no, no2, o3, U, and V across all ... |
github | CohenBerkeleyLab/WRF_Utils-master | wrf_grid_area.m | .m | WRF_Utils-master/wrf_grid_area.m | 2,725 | utf_8 | e6543109062ae647aa804ccab90b90f8 | function [ grid_area ] = wrf_grid_area( xlon, xlat, varargin )
%WRF_GRID_AREA Estimates the area of each WRF grid cell
% GRID_AREA = WRF_GRID_AREA( XLON, XLAT ) takes the grid center longitude
% (XLON) and latitude (XLAT) and returns the areas of the grid cells in
% kilometers (GRID_AREA). This uses wrf_grid_corn... |
github | CohenBerkeleyLab/WRF_Utils-master | wrf_grid_corners.m | .m | WRF_Utils-master/wrf_grid_corners.m | 4,076 | utf_8 | f07b77d1d96566f77ba0e842912f5547 | function [ xloncorn, xlatcorn ] = wrf_grid_corners( xlon, xlat )
%WRF_GRID_CORNERS Computes corners of WRF grid cells.
% [ XLONCORN, XLATCORN ] = WRF_GRID_CORNERS( XLON, XLAT )
% Takes as input the grid center points XLON and XLAT. Returns the
% 4-by-m-by-n arrays XLONCORN and XLATCORN where m and n are t... |
github | CohenBerkeleyLab/WRF_Utils-master | match_wrf2aircraft.m | .m | WRF_Utils-master/ChemComparison/match_wrf2aircraft.m | 15,900 | utf_8 | aa6bc3161ea89982262416c2dbb3ef0c | function [ Match ] = match_wrf2aircraft( Raw, wrf_dirs, wrf_prof_mode )
%MATCH_WRF2AIRCRAFT Generates a structure matching WRF output to aircraft data
% MATCH = MATCH_WRF2AIRCRAFT( RAW, WRF_DIRS ) Matches the aircraft data
% contained in RAW to the WRF data in wrfout_* files contained in
% WRF_DIRS. RAW must be a... |
github | CohenBerkeleyLab/WRF_Utils-master | parse_noaa_isd.m | .m | WRF_Utils-master/MetComparison/parse_noaa_isd.m | 4,301 | utf_8 | 4c0940a33b30c3307a5c1c77e56f13f7 | function [ Site ] = parse_noaa_isd( file, lonlim, latlim, datelim )
%PARSE_NOAA_ISD Parse a NOAA integrate surface database file
% PARSE_NOAA_ISD( FILE ) parses the NOAA ISD file at path FILE and
% returns a NOAAISDSite object.
%
% PARSE_NOAA_ISD( FILE, LONLIM, LATLIM ) will parse the file if the site
% falls w... |
github | CohenBerkeleyLab/WRF_Utils-master | wrf_met_comp_plots.m | .m | WRF_Utils-master/MetComparison/wrf_met_comp_plots.m | 25,618 | utf_8 | 12cd35eb0367d1da22ff22eb9ad01dd9 | function [ varargout ] = wrf_met_comp_plots( plottype, varargin )
%WRF_MET_COMP_PLOTS Collection of plots for comparing WRF output meteorology against references.
E = JLLErrors;
noaa_match_dir = '/Users/Josh/Documents/MATLAB/BEHR/Workspaces/WRF/NOAA ISD Obs Comparison/';
switch lower(plottype)
case 'spatial'
... |
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