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value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
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github | svndl/mrC-master | errorb.m | .m | mrC-master/tools/plotting/errorb.m | 9,494 | utf_8 | 566685d42160b09929f340c72d758dc7 | %% Description errorb(x,y,varargin)
% errorb(Y,E) plots Y and draws an error bar at each element of Y. The
% error bar is a distance of E(i) above and below the curve so that each
% bar is symmetric and 2*E(i) long.
% If Y and E are a matrices, errob groups the bars produced by the elements
% in each row and plots... |
github | svndl/mrC-master | format_ticks.m | .m | mrC-master/tools/plotting/format_ticks.m | 17,920 | utf_8 | 9451fdec572f520b405113bde2e3fb6c | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% BEGIN HEADER
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%... |
github | svndl/mrC-master | distinguishable_colors.m | .m | mrC-master/tools/plotting/distinguishable_colors.m | 5,753 | utf_8 | 57960cf5d13cead2f1e291d1288bccb2 | function colors = distinguishable_colors(n_colors,bg,func)
% DISTINGUISHABLE_COLORS: pick colors that are maximally perceptually distinct
%
% When plotting a set of lines, you may want to distinguish them by color.
% By default, Matlab chooses a small set of colors and cycles among them,
% and so if you have more than ... |
github | svndl/mrC-master | pdftops.m | .m | mrC-master/tools/plotting/export_fig/pdftops.m | 3,068 | utf_8 | 7a40ce10e58d68cd7eeda67992b993f3 | function varargout = pdftops(cmd)
%PDFTOPS Calls a local pdftops executable with the input command
%
% Example:
% [status result] = pdftops(cmd)
%
% Attempts to locate a pdftops executable, finally asking the user to
% specify the directory pdftops was installed into. The resulting path is
% stored for futur... |
github | svndl/mrC-master | isolate_axes.m | .m | mrC-master/tools/plotting/export_fig/isolate_axes.m | 3,794 | utf_8 | b104d66dd4d36f35d275c4ef3d2f41cd | %ISOLATE_AXES Isolate the specified axes in a figure on their own
%
% Examples:
% fh = isolate_axes(ah)
% fh = isolate_axes(ah, vis)
%
% This function will create a new figure containing the axes/uipanels
% specified, and also their associated legends and colorbars. The objects
% specified must all be in th... |
github | svndl/mrC-master | pdf2eps.m | .m | mrC-master/tools/plotting/export_fig/pdf2eps.m | 1,524 | utf_8 | 037f9109e96ab4385d13019a29db4639 | %PDF2EPS Convert a pdf file to eps format using pdftops
%
% Examples:
% pdf2eps source dest
%
% This function converts a pdf file to eps format.
%
% This function requires that you have pdftops, from the Xpdf suite of
% functions, installed on your system. This can be downloaded from:
% http://www.foolabs.c... |
github | svndl/mrC-master | print2array.m | .m | mrC-master/tools/plotting/export_fig/print2array.m | 6,474 | utf_8 | 4ead930267fe61c9b2a87139ee559dc8 | %PRINT2ARRAY Exports a figure to an image array
%
% Examples:
% A = print2array
% A = print2array(figure_handle)
% A = print2array(figure_handle, resolution)
% A = print2array(figure_handle, resolution, renderer)
% [A bcol] = print2array(...)
%
% This function outputs a bitmap image of the given fig... |
github | svndl/mrC-master | eps2pdf.m | .m | mrC-master/tools/plotting/export_fig/eps2pdf.m | 5,151 | utf_8 | b356d73460fdebe8ef6fa428d5b2c125 | %EPS2PDF Convert an eps file to pdf format using ghostscript
%
% Examples:
% eps2pdf source dest
% eps2pdf(source, dest, crop)
% eps2pdf(source, dest, crop, append)
% eps2pdf(source, dest, crop, append, gray)
% eps2pdf(source, dest, crop, append, gray, quality)
%
% This function converts an eps file... |
github | svndl/mrC-master | copyfig.m | .m | mrC-master/tools/plotting/export_fig/copyfig.m | 846 | utf_8 | 8f479727f76b878a077b76ca7afed48e | %COPYFIG Create a copy of a figure, without changing the figure
%
% Examples:
% fh_new = copyfig(fh_old)
%
% This function will create a copy of a figure, but not change the figure,
% as copyobj sometimes does, e.g. by changing legends.
%
% IN:
% fh_old - The handle of the figure to be copied. Default: gc... |
github | svndl/mrC-master | user_string.m | .m | mrC-master/tools/plotting/export_fig/user_string.m | 2,462 | utf_8 | dd1a7fa5b4f2be6320fc2538737a2f3e | %USER_STRING Get/set a user specific string
%
% Examples:
% string = user_string(string_name)
% saved = user_string(string_name, new_string)
%
% Function to get and set a string in a system or user specific file. This
% enables, for example, system specific paths to binaries to be saved.
%
% IN:
% string_name - ... |
github | svndl/mrC-master | export_fig.m | .m | mrC-master/tools/plotting/export_fig/export_fig.m | 30,376 | utf_8 | 7dab6f956d238b4a8bd6770e3fa948ec | %EXPORT_FIG Exports figures suitable for publication
%
% Examples:
% im = export_fig
% [im alpha] = export_fig
% export_fig filename
% export_fig filename -format1 -format2
% export_fig ... -nocrop
% export_fig ... -transparent
% export_fig ... -native
% export_fig ... -m<val>
% export_fig... |
github | svndl/mrC-master | ghostscript.m | .m | mrC-master/tools/plotting/export_fig/ghostscript.m | 4,650 | utf_8 | db7a65458702e2333638288011dc0d7e | %GHOSTSCRIPT Calls a local GhostScript executable with the input command
%
% Example:
% [status result] = ghostscript(cmd)
%
% Attempts to locate a ghostscript executable, finally asking the user to
% specify the directory ghostcript was installed into. The resulting path
% is stored for future reference.
% ... |
github | svndl/mrC-master | freezeColors.m | .m | mrC-master/tools/plotting/freezeColors_v23_cbfreeze/freezeColors/freezeColors.m | 9,815 | utf_8 | 2068d7a4f7a74d251e2519c4c5c1c171 | function freezeColors(varargin)
% freezeColors Lock colors of plot, enabling multiple colormaps per figure. (v2.3)
%
% Problem: There is only one colormap per figure. This function provides
% an easy solution when plots using different colomaps are desired
% in the same figure.
%
% freezeColors freeze... |
github | svndl/mrC-master | tutorial_filters.m | .m | mrC-master/tools/plotting/plot2svg/tutorial_filters.m | 5,669 | utf_8 | 2851aa1347386c724ec5b56aa321f9a6 | function tutorial_filters
file = 'matterhorn_small.jpg';
fig = figure;
set(fig, 'DefaultAxesFontName', 'Arial')
set(fig, 'DefaultAxesFontSize', 6)
plotCounter = 1;
xPlots = 3;
yPlots = 4;
% a) Original plot with a line, patch, and text object
subplot(yPlots, xPlots, plotCounter)
plotCounter = plotCounter + 1;... |
github | svndl/mrC-master | GE_createSPMmat.m | .m | mrC-master/tools/afni/GE_createSPMmat.m | 1,480 | utf_8 | 9da4628d724922838247f14727e25722 | %%%%%%%%%%%%%%%%%%%%%%%%
% %
% Write SPM mat file %
% %
%%%%%%%%%%%%%%%%%%%%%%%%
function M = GE_createSPMmat(im_hdr, scandir)
%
% Put the appropriate translations and rotations to the M matrix
% given the information in the image header and the direction of
% acquisition
%
%... |
github | svndl/mrC-master | NewCs.m | .m | mrC-master/tools/afni/NewCs.m | 20,018 | utf_8 | 02f4f3b94b14be6adab8ee52224b2dc3 | function [cs] = NewCs(Name, win, p1, p2, p3, p4, p5)
%
% [cs] = NewCs (Name, Con, P1, P2)
%
%Purpose:
% Create a command structure for passing to TellAfni
%
%
%Input Parameters:
% Name: Name of command, see AFNI's README.driver for all possibilities
% Example: SET_THRESHOLD
% To see a list ... |
github | svndl/mrC-master | New_HEAD.m | .m | mrC-master/tools/afni/New_HEAD.m | 8,432 | utf_8 | 3213a4c8b09f49855cafdf9925e5b3d3 | function [err,Info, opt] = New_HEAD (opt)
%
% [err,Info, Opt] = New_HEAD (Opt)
%
%Purpose:
% A function for the likes of Greg Detre.
% It makes the creation of an AFNI dataset
% from a 3 or 4 dimensional matrix in matlab a breeze.
%
%
%
%Input Parameters:
% opt is an options structure with the follow... |
github | svndl/mrC-master | PeakFinder.m | .m | mrC-master/tools/afni/PeakFinder.m | 13,195 | utf_8 | de2c65050ed5478fa3986e0148913975 | function [R, e] = PeakFinder(vvec, Opt)
%Example: PeakFinder('Resp*.1D');
% or PeakFinder(v) where v is a column vector
% if v is a matrix, each column is processed separately.
%
%clear all but vvec (useful if I run this function as as script)
keep('vvec', 'Opt');
e = 0;
R = struct([]);
if (nargin < 2) Opt = struct();... |
github | svndl/mrC-master | rgbdectohex.m | .m | mrC-master/tools/afni/rgbdectohex.m | 6,704 | utf_8 | 92da7b120cfc35812f4d4986566df4b6 | function [Cs, sall] = rgbdectohex (Mrgb,strg, prompt)
%
% Mode 1:
% [Cs, sall] = rgbdectohex (Mrgb,[string])
% Mode 2:
% rgbdectohex
% Mode 3:
% Mrgb = rgbdectohex (sall)
%
% Mode 1:
%This function takes as an input the rgb matrix Mrgb (size is Nx3)
% where each row represents the rgb gun values... |
github | svndl/mrC-master | afni_niml_writesimple.m | .m | mrC-master/tools/afni/afni_niml_writesimple.m | 5,001 | utf_8 | 04e2bbd96874cce4f397da5d5caabcde | function D=afni_niml_writesimple(S,fn)
% writes surface data in a 'simple' struct in NIML format to a file.
%
% D=AFNI_NIML_WRITESIMPLE(fn,S) writes surface data S to the file FN.
% S should be a struct with a field S.data, and optionally S.stats,
% S.labels, S.history, S.types, and S.node_indices.
% This function ret... |
github | svndl/mrC-master | afni_talk_defs.m | .m | mrC-master/tools/afni/afni_talk_defs.m | 699 | utf_8 | 5d351c91f71b337f0cb3bfacbe9a7bee | % comm = afni_talk_defs() for getting communications defaults
% If you have a port offset PO to pass along, use:
% comm = afni_talk_defs(comm, PO);
function [comm] = afni_talk_defs(comm, np)
comm.con = -1;
comm.sockcon = -1;
if (nargin > 1),
com = sprintf('suma -npq %d -port_number_quiet MATLAB_S... |
github | svndl/mrC-master | BrikLoad.m | .m | mrC-master/tools/afni/BrikLoad.m | 31,411 | utf_8 | 78736510e41324f7071e54812a819c86 | function [err, V, Info, ErrMessage] = BrikLoad (BrikName, param1, param2)
%
% OLD USAGE for backward compatibility, see New Usage
%
% [err, V, Info, ErrMessage] = BrikLoad (BrikName, [form], [MachineFormat])
% or
% [V,Info] = BrikLoad (BrikName, [form], [MachineFormat])
% or
% [V] = BrikLoad (BrikName, [form], [... |
github | svndl/mrC-master | CA_EZ_Prep_genx.m | .m | mrC-master/tools/afni/CA_EZ_Prep_genx.m | 15,116 | utf_8 | 51cd86ef6ec2196b2839fe6c1dde1a2b | function [MapMPM, MapML, aur] = CA_EZ_Prep_genx()
% A function to process a new Eickhoff, Amunts and Zilles CA toolbox
% create NIML files that describe "atlas point lists" for each
% of the atlases included
% DRG/ZSS SSCC MAY 2011
FuncName = 'CA_EZ_Prep_genx';
MapMPM = [];
MapML = [];
% version 1.8
CA_EZ_Version = '... |
github | svndl/mrC-master | zglobb.m | .m | mrC-master/tools/afni/zglobb.m | 3,946 | utf_8 | 508195b45ee39c7296447826b75515f4 | function [err,ErrMessage, NameList] = zglobb (Identifiers, Opt)
%
% [err, ErrMessage, List] = zglobb (Identifiers, [Opt])
%or
% [List] = zglobb (Identifiers, [Opt])
%Purpose:
% returns the list of files specified in Identifiers
%
%
%Input Parameters:
% Identifiers is a cellstr identifying which briks to ... |
github | svndl/mrC-master | afni_niml_parse.m | .m | mrC-master/tools/afni/afni_niml_parse.m | 4,146 | utf_8 | 9c289bd0d02d55af572d289bf76d29b6 | function niml = afni_niml_parse(s)
% Simple parsing routine for AFNI NIML datasets
%
% N=AFNI_NIML_PARSE(S) parses the niml string S and returns a parsed
% structure P.
%
% P can either be an niml element, or a group of niml elements. In the
% formder case, P contains a field .data; in the latter, a cell .nodes.... |
github | svndl/mrC-master | afni_fig_interface.m | .m | mrC-master/tools/afni/afni_fig_interface.m | 3,035 | utf_8 | a6e27aaa75a4fe2aebabe4db5d20acfb | function afni_fig_interface(src, evnt)
cf = gcf;
figure(src);
% evnt
ud = get(src,'UserData');
if (isempty(ud) | ~isfield(ud,'axes_lock')),
ud = default_ud();
set(src,'UserData',ud);
end
if ( lower(evnt.Character) == 'l' ),
ud.axes_lock = ~ud.axes_lock;
set (src,'UserD... |
github | svndl/mrC-master | TellAfni.m | .m | mrC-master/tools/afni/TellAfni.m | 5,472 | utf_8 | 77dce5f5339989af26f3e100da6bcfc3 | function [err] = TellAfni (cs, opt)
%
% [err] = TellAfni (cs, opt)
%
%Purpose:
% Drive AFNI
%
%
%Input Parameters:
% cs: An Nx1 vector of communication command structures
% It is obtained using NewCs structure
% opt: An optional options structure
% .QuitOnErr (0/[1]): Return from function if ... |
github | svndl/mrC-master | zinputdlg.m | .m | mrC-master/tools/afni/zinputdlg.m | 16,603 | utf_8 | 94a3118376364889b882ce214d95b921 | function Answer=zinputdlg(Prompt, Title, NumLines, DefAns, Resize)
% A copy of inputdlg.m , modified to have better looking font settings
%ZINPUTDLG Input dialog box.
% ANSWER = ZINPUTDLG(PROMPT) creates a modal dialog box that returns user
% input for multiple prompts in the cell array ANSWER. PROMPT is a cell
% ar... |
github | svndl/mrC-master | afni_niml_read.m | .m | mrC-master/tools/afni/afni_niml_read.m | 2,791 | utf_8 | 3da5cff1cf07ffd470bd42539f8078b9 | function [p,s]=afni_niml_read(fn)
% simple function to read niml files
%
% P=AFNI_NIML_READ(FN) reads a file FN and returns a NIML structure P.
% [P,S]=AFNI_NIML_READ(FN) also returns the file contents S
%
% If FN refers to a file in another format than ASCII NIML, an attempt is
% made to convert the file to this forma... |
github | svndl/mrC-master | afni_nel_parse.m | .m | mrC-master/tools/afni/afni_nel_parse.m | 1,763 | utf_8 | 62fbd076a3c4430f06f6385abc18b2d8 | function [nel] = afni_nel_parse(nellcell)
%should really check that this is nel and not ngr ...
%assuming we have nel
%get the header part
cnel = char(nellcell); clear nellcell;
ncnel = length(cnel);
%break up into head and data
expr = '(?<head><(\w+).*?>)(?<data>.*)<';
%usi... |
github | svndl/mrC-master | afni_niml_print.m | .m | mrC-master/tools/afni/afni_niml_print.m | 5,521 | utf_8 | 9dbc69da949e82e64071c668290ac2da | function s=afni_niml_print(p)
% takes a NIML data structure and converts it to string representation
%
% S=AFNI_NIML_PRINT(P) takes an NIML datastructure P and returns a string
% representation S.
%
% This function is more or less the inverse of AFNI_NIML_PARSE.
%
% The current implementation will take any struct that... |
github | svndl/mrC-master | CA_EZ_Prep.m | .m | mrC-master/tools/afni/CA_EZ_Prep.m | 14,358 | utf_8 | af87e1ccd31dc096f0a411e877de8dd9 | function [MapMPM, MapML, aur] = CA_EZ_Prep()
% A function to process a new Eickhoff, Amunts and Zilles CA toolbox
% The function creates new versions of AFNI's source files
% thd_ttatlas_CA_EZ.c and thd_ttatlas_CA_EZ.h .
% The new files created are called thd_ttatlas_CA_EZ-auto.c and thd_ttatlas_CA_EZ-auto.h
% must be ... |
github | svndl/mrC-master | ROIcmap.m | .m | mrC-master/tools/afni/ROIcmap.m | 3,692 | utf_8 | 2bf411d8a196a63c050066abae7b8905 | function [M] = ROIcmap(nc,opt)
% [M] = ROIcmap([nc],[opt]);
% creates a colormap with
% no color too close to grayscale,
% no two consecutive colors too close
% no colors exeedingly close to another in the map
% no colors too close to a background color (optional)
% nc: number... |
github | svndl/mrC-master | BrikInfo_2_niml_writesimple.m | .m | mrC-master/tools/afni/BrikInfo_2_niml_writesimple.m | 2,013 | utf_8 | a6acbbbf09551917a42d288bd4aa9b0c | function S=BrikInfo_2_niml_writesimple(Info, S)
%
% [S]=BrikInfo_2_niml_writesimple(Info, [S])
%
%Purpose:
% Converts some fields in the BRIK header structure
% to a structure used in function afni_niml_writesimple
%
%Input Parameters:
% Info: Brick header structure like one output by BrikInfo
% S: If specifed add... |
github | svndl/mrC-master | ttest_permute_sstats.m | .m | mrC-master/tools/statistics/ttest_permute_sstats.m | 7,134 | utf_8 | 402eb44813c96749d6effc0661a47b79 | function [realH, realP, realT, corrH, critVal, supraTh, randDist]= ttest_permute_sstats( inData,maxPerms,testStat,timeMask,permMatrix,deletePool,tParams)
% [realH,realP,realT,corrH,critVal,supraTh, randDist= ttest_permute_sstat( inData, maxPerms, testStat, timeMask, permMatrix, deletePool, tParams )
%
... |
github | svndl/mrC-master | ttest_permute.m | .m | mrC-master/tools/statistics/ttest_permute.m | 4,211 | utf_8 | 5cca3b8158082d5d7fa2dfa53843aa63 | function [realT,realP,corrT,critVal,clustDistrib]= ttest_permute( inData,maxPerms,timeMask,permMatrix,deletePool,tParams )
% [realT,realP,corrT,critVal,clustDistrib]= ttest_permute( inData,maxPerms,timeMask,permMatrix,deletePool,tParams )
%
% input:
% inData: the difference waveform t... |
github | svndl/mrC-master | FDR_main.m | .m | mrC-master/tools/statistics/FDR/FDR_main.m | 7,392 | utf_8 | b5829aff6d354cb8c09eff5ffd6f93b1 | % General FDR procedure
% Parameters:
% P p-value vector
% q scalar controlling FDR output
% str name of procedure (case insensetive)
% Output:
% F vector containing indices of hypotheses that passsed selected procedure
function F=FDR_main(P, q, str)
switch lower(str)
case 'ib... |
github | svndl/mrC-master | RigidRotate.m | .m | mrC-master/+mrC/RigidRotate.m | 3,156 | utf_8 | 48fbc31267bdb29d7b5123f4d542058d | function [transMat,movedPoints] = RigidRotate(params,moveablePoints)
% mrC.RigidRotate - performs a rigid body transformation
% [movedPoints,rotMtx] = RigidRotate(params,movablePoints)
% This function that performs a rigid body transformation on movablePoints
% that is specified as follows:
%
% movablePoints ... |
github | svndl/mrC-master | SNR.m | .m | mrC-master/+mrC/SNR.m | 10,214 | utf_8 | f9f3b97ff487c7ea53404207c4907274 | function [outData,anovaData] = SNR(Y,Ydim,varargin)
% [outData,anovaData] = mrC.SNR(Y,Ydim,varargin)
opt = ParseArgs(varargin, ...
'ROIs', Ydim{2}, ...
'conds', Ydim{4}, ...
'subs', Ydim{3}, ...
'inverse', 1, ...
'band', 2, ...
'method', 'Coherent', ...
'... |
github | svndl/mrC-master | FitPointsToScalp.m | .m | mrC-master/+mrC/FitPointsToScalp.m | 4,831 | utf_8 | af16fc6c237eccf30de0c8fc8f55cdee | function [rotationMtx, movedPoints] = FitPointsToScalp(scalp,electrodes,headshape)
% mrC.fitPointsToScalp - Find a rigid transformation the best fits 2 sets of points
% function [rotationMtx, movedPoints] = mrC.fitPointsToScalp(scalp,fiducials,electrodes,headshape)
% Uses function: rigidRotate
%
%... |
github | svndl/mrC-master | FlattenZ.m | .m | mrC-master/+mrC/FlattenZ.m | 2,066 | utf_8 | e7f77ec00eb22b08436f8ae3f3f397c3 | function xy = FlattenZ(xyz,eFlat)
% xy = mrC.FlattenZ(xyz, eFlat)
% Flatten a set of 3-D Cartesian coords in the 3rd dimension
% 1. find best fitting sphere
% 2. subtract origin
% 3. tranform to spherical coords [theta,phi,r]
% 4. flatten to 2-D polar coords using:
% theta = theta
... |
github | svndl/mrC-master | MakeInverses.m | .m | mrC-master/+mrC/MakeInverses.m | 19,828 | utf_8 | 1fce4da98da65c4f8765cd7282063909 | function params = MakeInverses( projectDir,params )
%function mrC.MakeInverses( projectDir,params )
%
% params is a structure some fields:
% params.SNR = estimated power SNR
% params.useROIs = boolean specifying whether to constrain
% params.areaExp = area weighting exponent.
% localization ... |
github | svndl/mrC-master | CoregisterElectrodes.m | .m | mrC-master/+mrC/CoregisterElectrodes.m | 11,659 | utf_8 | 0647b8a8cce26e34abe8ce25f927588e | function [scf,fidError] = CoregisterElectrodes( elpFile, fiducialFile, outputDir , display )
% Description: Function written by Justin Ales
%
% Syntax: mrC.CoregisterElectrodes( elpfile, fiducialFile, outputDir )
%
% elpfile - string indicating the electrode positions file in the ... |
github | svndl/mrC-master | TriMaker.m | .m | mrC-master/+mrC/+HeadModel/TriMaker.m | 4,220 | utf_8 | b214bece480279868c0655a611c16009 | function success = TriMaker(subj_id,headmodel_folder)
% success = mrC.Headmodel.TriMaker(subj_id)
if strfind(subj_id,'_fs4');
subj_id = subj_id(1:end-4); % get rid of FS suffix, if given by user
else
end
[fsDir,anatDir] = mrC.SystemSetup;
if nargin < 2
headmodel_fol... |
github | svndl/mrC-master | VisualizeSourceRoi2.m | .m | mrC-master/+mrC/+Simulate/VisualizeSourceRoi2.m | 5,805 | utf_8 | 9118bbf9bf815f93acdf2d75c9bb18c4 | function [Fhandler,RoiList] = VisualizeSourceRoi2(subID,anatDir,RoiType,RoiIdx,direction,hemi,cmap,RoiLeg)
% gets the subject ID and anatomy folder and plots the
% ROIs on the subjects default cortex...
% Elham Barzegaran, 5.25.2018
%% default variables
if ~exist('anatDir','var')||isempty(anatDir)
anatDir = getpre... |
github | svndl/mrC-master | FitNoise.m | .m | mrC-master/+mrC/+Simulate/FitNoise.m | 6,870 | utf_8 | 5e3ea5cb20718472d8656e73f1d66ee4 | function [noise, NoiseParams,sensor_noise] = FitNoise(f_sampling, n_samples,NoiseParams, pink_noise,alpha_noise, sensor_noise,fwdMatrix,doFwdProjection,optimizeParam)
% Fit the Noise-to-Noise ratio accroding to the real resting EEG data
%% --------------------combine different types of noise--------------------
if opt... |
github | svndl/mrC-master | VisualizeSourceRoi.m | .m | mrC-master/+mrC/+Simulate/VisualizeSourceRoi.m | 5,650 | utf_8 | c6e840d624eb38ee0557b726bb5b429c | function [Fhandler,RoiList] = VisualizeSourceRoi(subID,anatDir,RoiType,RoiIdx,direction,hemi,cmap,RoiLeg)
% gets the subject ID and anatomy folder and plots the
% ROIs on the subjects default cortex...
% [Fhandler,RoiList] = VisualizeSourceRoi(subID,anatDir,RoiType,RoiIdx,direction,hemi,cmap,RoiLeg)
% Elham Barzegaran,... |
github | svndl/mrC-master | PrepareProjectSimulate.m | .m | mrC-master/+mrC/+Simulate/PrepareProjectSimulate.m | 6,410 | utf_8 | 4ce7e4ee61d977ecfec0a97942314d6e |
function [ForwardPath, AnatomyPath] = PrepareProjectSimulate(ProjectPath,DestPath,varargin)
% This function get a mrC project folder and copy the necessary data including forward,
% ROI and surface and inverse files to another destination to make a smaller input data
% for mrC.simulate
% INPUTS:
% ProjectPath: ... |
github | svndl/mrC-master | SrcSigMtx.m | .m | mrC-master/+mrC/+Simulate/SrcSigMtx.m | 14,322 | utf_8 | 4e6f05a885724f95ddaa6795cf4bf092 | function [EEGData,EEGData_signal, sourceData,roiSet] = SrcSigMtx(rois,fwdMatrix,surfData,opt,noise,noiseSensor,lambda,spatial_normalization_type)% ROIsig %NoiseParams
% Description: Generate Seed Signal within specified ROIs
%
% Syntax: [EEGData,sourceData,roiSet] = SrcSigMtx(rois,fwdMatrix,surfData,signal... |
github | svndl/mrC-master | ResolutionMatrices.m | .m | mrC-master/+mrC/+Simulate/ResolutionMatrices.m | 13,523 | utf_8 | bd85c9f6db6205c59bbe2647393be22d | function [CrossTalk,Errors,ROISource,ScalpData,LIST,subIDs] = ResolutionMatrices(projectPath,varargin)
% Description: This function gets the path for a mrc project and simulate
% EEG with activity (seed signal as input) in specific ROIs (input),
% and pink and alpha noises (noise parameters can be set ... |
github | svndl/mrC-master | SimulateProject.m | .m | mrC-master/+mrC/+Simulate/SimulateProject.m | 20,542 | utf_8 | 2386a85b98ef370dae776d9c07c2b8d6 | function [EEGData,EEGAxx,EEGData_signal,EEGAxx_signal,sourceDataOrigin,masterList,subIDs,allSubjFwdMatrices,allSubjRois] = SimulateProject(projectPath,varargin)
% Syntax: [EEGData,EEGAxx,sourceDataOrigin,masterList,subIDs] = SimulateProject(projectPath,varargin)
% Description: This function gets the path f... |
github | svndl/mrC-master | GenerateNoise.m | .m | mrC-master/+mrC/+Simulate/GenerateNoise.m | 9,221 | utf_8 | e992a6d661e1fee85a63b0fad540c975 | function [pink_noise, alpha_noise,sensor_noise] = GenerateNoise(f_sampling, n_samples, n_nodes, NoiseParams, noise_mixing_data, spatial_normalization_type,fwdMatrix,doFwdProjection)
% Syntax: [noise, pink_noise, pink_noise_uncoh, alpha_noise] = GenerateNoise(f_sampling, n_samples, n_nodes, mu, alpha_nodes, noise_mixing... |
github | svndl/mrC-master | dijkstra.m | .m | mrC-master/+mrC/+Simulate/private/dijkstra.m | 10,890 | utf_8 | 537f77ffe119ce21c7ee1a9e2a0d2cc2 | % DIJKSTRA Calculate Minimum Costs and Paths using Dijkstra's Algorithm
%
% Filename: dijkstra.m
%
% Description: Given vertices and edge connections for a graph (represented by
% either adjacency matrix or edge list) and edge costs that are greater
% than zero, this function computes the shortest path from... |
github | svndl/mrC-master | mne_load_coil_def.m | .m | mrC-master/external/mne_matlab/mne_load_coil_def.m | 8,714 | utf_8 | 27f6f7c6a6d28610885a9c1be788e73a | function [CoilDef,Header] = mne_load_coil_def(fname);
%
%
% [CoilDef,Header] = mne_load_coil_def(fname);
% CoilDef = mne_load_coil_def(fname);
%
% If file name is not specified, the standard coil definition file
% $MNE_ROOT/setup/mne/coil_def.dat or $MNE_ROOT/share/mne/coil_def.dat is read
%
% The co... |
github | svndl/mrC-master | fiff_find_evoked.m | .m | mrC-master/external/mne_matlab/fiff_find_evoked.m | 2,846 | utf_8 | f7c5e4fd4395754f0e87d3fe6e984d62 | function [data_sets] = fiff_find_evoked(fname)
%
% [data_sets] = fiff_find_evoked(fname)
%
% Find all evoked data sets in a fif file and create a list of descriptors
%
%
% Author : Matti Hamalainen, MGH Martinos Center
% License : BSD 3-clause
%
global FIFF;
if isempty(FIFF)
FIFF = fiff_define_constants();
e... |
github | svndl/mrC-master | eeglab.m | .m | mrC-master/external/eeglab14_1_1b/eeglab.m | 112,761 | utf_8 | e89e8ec2638684a492f792c224d36b58 | % eeglab() - Matlab graphic user interface environment for
% electrophysiological data analysis incorporating the ICA/EEG toolbox
% (Makeig et al.) developed at CNL / The Salk Institute, 1997-2001.
% Released 11/2002- as EEGLAB (Delorme, Makeig, et al.) at the Swartz Center
% for Computational Neuroscience,... |
github | svndl/mrC-master | display.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/display.m | 1,180 | utf_8 | d3d679b5764eca6d062540923f669f7b | % display() - display an EEG data class underlying structure
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the ... |
github | svndl/mrC-master | reshape.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/reshape.m | 1,449 | utf_8 | d59a7e256f6fc43fe77f3be9319fcc46 | % reshape() - reshape of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free ... |
github | svndl/mrC-master | end.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/end.m | 901 | utf_8 | 0e38d125a547083cb574fbd3bb455fbd | % end() - last index to memmapdata array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Founda... |
github | svndl/mrC-master | subsasgn.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/subsasgn.m | 1,590 | utf_8 | 6b2894eb17dab5aae0637b84992ffb7d | % subsasgn() - define index assignment for eegdata objects
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Fr... |
github | svndl/mrC-master | isnumeric.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/isnumeric.m | 877 | utf_8 | 34baf204e1b984ee69cf7f462fe2e524 | % isnumeric() - returns 1
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either v... |
github | svndl/mrC-master | length.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/length.m | 913 | utf_8 | f0841237745a123f3215e00164cc4a1a | % length() - length of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free So... |
github | svndl/mrC-master | sum.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/sum.m | 1,913 | utf_8 | dbd7353e16ccf6a1a0b69875cd9050cb | % sum() - sum of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software... |
github | svndl/mrC-master | size.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/size.m | 1,383 | utf_8 | c7033b3ab1405ded2c8794f2c214beb9 | % size() - size of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Softwa... |
github | svndl/mrC-master | subsref.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/subsref.m | 4,622 | utf_8 | 096fd75b6454f11ffee5a172000a64c1 | % subsref() - index eegdata class
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; e... |
github | svndl/mrC-master | ndims.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/ndims.m | 1,169 | utf_8 | 8c3ed2dde450e1422a2552d22e9c150b | % ndims() - number of dimension of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
%... |
github | svndl/mrC-master | memmapdata.m | .m | mrC-master/external/eeglab14_1_1b/functions/@memmapdata/memmapdata.m | 1,994 | utf_8 | 5f967fcb7b637954900e09789144dde6 | % memmapdata() - create a memory-mapped data class
%
% Usage:
% >> data_class = memmapdata(data);
%
% Inputs:
% data - input data or data file
%
% Outputs:
% data_class - output dataset class
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
... |
github | svndl/mrC-master | display.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/display.m | 1,161 | utf_8 | b43db5e3387d5dcb39fafa9aa03939f9 | % display() - display an EEG data class underlying structure
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the ... |
github | svndl/mrC-master | reshape.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/reshape.m | 1,242 | utf_8 | cc03295fbaa6179eb2e8b266daf6b644 | % reshape() - reshape of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free ... |
github | svndl/mrC-master | subsasgn_old.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/subsasgn_old.m | 9,802 | utf_8 | 0fc68a1bfa60e3118b3a4b6efd10fa52 | % subsasgn() - define index assignment for eegdata objects
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Fr... |
github | svndl/mrC-master | end.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/end.m | 901 | utf_8 | 0e38d125a547083cb574fbd3bb455fbd | % end() - last index to memmapdata array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Founda... |
github | svndl/mrC-master | subsasgn.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/subsasgn.m | 10,655 | utf_8 | c4514f5b1f0fec385eeb19fee7a5db56 | % subsasgn() - define index assignment for eegdata objects
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Fr... |
github | svndl/mrC-master | isnumeric.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/isnumeric.m | 877 | utf_8 | 34baf204e1b984ee69cf7f462fe2e524 | % isnumeric() - returns 1
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either v... |
github | svndl/mrC-master | checkcopies_local.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/checkcopies_local.m | 634 | utf_8 | 8eb8d5fec95c91346e91a09010082b47 | % subfunction checking the number of local copies
% -----------------------------------------------
function ncopies = checkcopies_local(obj, arg);
ncopies = 0;
if isstruct(arg)
for ilen = 1:length(arg)
for index = fieldnames(arg)'
ncopies = ncopies + checkcopies_local(obj, arg(ilen).(index{1}))... |
github | svndl/mrC-master | changefile.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/changefile.m | 187 | utf_8 | e75127c90da43ddce182d36cf0abbdee | % this function is called when the file is being saved
function obj = changefile(obj, newfile)
movefile(obj.dataFile, newfile);
obj.dataFile = newfile;
obj.writable = false; |
github | svndl/mrC-master | var.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/var.m | 1,416 | utf_8 | 2360192fa42b3c35ebd7743ffe4fe8b6 | % var() - variance of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Sof... |
github | svndl/mrC-master | length.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/length.m | 913 | utf_8 | f0841237745a123f3215e00164cc4a1a | % length() - length of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free So... |
github | svndl/mrC-master | sum.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/sum.m | 1,212 | utf_8 | 2fbce1d1b6e2a5edf32742897441a732 | % sum() - sum of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software... |
github | svndl/mrC-master | size.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/size.m | 1,751 | utf_8 | daf6932de04161ccb2df3df31b45203a | % size() - size of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Softwa... |
github | svndl/mrC-master | subsref.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/subsref.m | 2,711 | utf_8 | 1da2db6dbbc53f36d6d2954f095f9064 | % subsref() - index eegdata class
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; e... |
github | svndl/mrC-master | ndims.m | .m | mrC-master/external/eeglab14_1_1b/functions/@mmo/ndims.m | 1,095 | utf_8 | 7ddcbafa2aaf95308a1a4de4a272f0ae | % ndims() - number of dimension of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
%... |
github | svndl/mrC-master | correctfit.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/correctfit.m | 3,222 | utf_8 | 69c8b2f965023329820bdfd3c7e82176 | % correctfit() - correct fit using observed p-values. Use this function
% if for some reason, the distribution of p values is
% not uniform between 0 and 1
%
% Usage:
% >> [p phat pci zerofreq] = correctfit(pval, 'key', 'val');
%
% Inputs:
% pval - input p value
%
% Optional inputs... |
github | svndl/mrC-master | timef.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/timef.m | 42,818 | utf_8 | 6663467d76d01722baccf168fec18e1b | % timef() - Returns estimates and plots of mean event-related spectral
% perturbation (ERSP) and inter-trial coherence (ITC) changes
% across event-related trials (epochs) of a single input time series.
% * Uses either fixed-window, zero-padded FFTs (fastest), wavelet
% 0-padded D... |
github | svndl/mrC-master | rsadjust.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/rsadjust.m | 2,955 | utf_8 | 45d8f416e2d360293ee83cb15f5e3976 | % rsadjust() - adjust l-values (Ramberg-Schmeiser distribution)
% with respect to signal mean and variance
%
% Usage: p = rsadjust(l3, l4, m, var, skew)
%
% Input:
% l3 - value lambda3 for Ramberg-Schmeiser distribution
% l4 - value lambda4 for Ramberg-Schmeiser distribution
% m - mean of t... |
github | svndl/mrC-master | newcrossf.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/newcrossf.m | 63,870 | utf_8 | cb2a530dbabd60d30681d5c293194574 | % newcrossf() - Returns estimates and plots event-related coherence (ERCOH)
% between two input data time series. A lower panel (optionally) shows
% the coherence phase difference between the processes. In this panel:
% In the plot output by > newcrossf(x,y,...);
% 90 degrees (orang... |
github | svndl/mrC-master | crossf.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/crossf.m | 59,295 | utf_8 | 395468032fe3d1abba14d59dfe6d1317 | % crossf() - Returns estimates and plots event-related coherence (ERCOH)
% between two input data time series (X,Y). A lower panel (optionally)
% shows the coherence phase difference between the processes.
% In this panel, output by > crossf(X,Y,...);
% 90 degrees (orange) means X l... |
github | svndl/mrC-master | dftfilt2.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/dftfilt2.m | 5,665 | utf_8 | fa2b4cd1d3a209b72ce506ee4e6fee46 | % dftfilt2() - discrete complex wavelet filters
%
% Usage:
% >> wavelet = dftfilt2( freqs, cycles, srate, cyclefact)
%
% Inputs:
% freqs - frequency array
% cycles - cycles array. If one value is given, all wavelets have
% the same number of cycles. If two values are given, the
% tw... |
github | svndl/mrC-master | newtimef.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/newtimef.m | 97,481 | utf_8 | 9b205e33083e0973b5d9e671eac0abb5 | % newtimef() - Return estimates and plots of mean event-related (log) spectral
% perturbation (ERSP) and inter-trial coherence (ITC) events across
% event-related trials (epochs) of a single input channel time series.
%
% * Also can compute and statistically compare transforms for two time
%... |
github | svndl/mrC-master | rspdfsolv.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/rspdfsolv.m | 2,680 | utf_8 | f54da2906c104216b972ff3b6bbf6f3e | % rspdfsolv() - sub-function used by rsfit() to searc for optimal
% parameter for Ramberg-Schmeiser distribution
%
% Usage: res = rspdfsolv(l, l3, l4)
%
% Input:
% l - [lambda3 lamda4] parameters to optimize
% skew - expected skewness
% kurt - expected kurtosis
%
% Output:
% res - residual
%
%... |
github | svndl/mrC-master | dftfilt.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/dftfilt.m | 2,686 | utf_8 | b950c4302f749a1e9cffcd4c7f4ebe6a | % dftfilt() - discrete Fourier filter
%
% Usage:
% >> b = dftfilt(n,W,c,k,q)
%
% Inputs:
% n - number of input samples
% W - maximum angular freq. relative to n, 0 < W <= .5
% c - cycles
% k - oversampling
% q - [0;1] 0->fft, 1->c cycles
%
% Authors: Sigurd Enghoff, Arnaud Delorme & Scott Makeig,
% ... |
github | svndl/mrC-master | rspfunc.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/rspfunc.m | 1,468 | utf_8 | d6a6d26022ec2e38fa4adca9a28a5dde | % rspfunc() - sub-function used by rsget()
%
% Usage: res = rspfunc(pval, l, rval)
%
% Input:
% pval - p-value to optimize
% l - [l1 l2 l3 l4] l-values for Ramberg-Schmeiser distribution
% rval - expected r-value
%
% Output:
% res - residual
%
% Author: Arnaud Delorme, SCCN, 2003
%
% See also: rsget()
%
% R... |
github | svndl/mrC-master | correct_mc.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/correct_mc.m | 5,698 | utf_8 | 92f18a363d2fec001a50fafbcf9e06b5 | % correct_mc() - compute an upper limit for the number of independant
% time-frequency estimate in a given time-frequency image.
% This number can be used to correct for multiple comparisons.
%
% Usage:
% [ncorrect array] = correct_mc( EEG, cycles, maxfreq, timesout);
%
% Inputs:
% ... |
github | svndl/mrC-master | pac.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/pac.m | 21,849 | utf_8 | a7d13b249d1c873e24a0f43a7cda2c5c | % pac() - compute phase-amplitude coupling (power of first input
% correlation with phase of second). There is no graphical output
% to this function.
%
% Usage:
% >> pac(x,y,srate);
% >> [coh,timesout,freqsout1,freqsout2,cohboot] ...
% = pac(x,y,srate,'key1', 'val1', 'key2', val... |
github | svndl/mrC-master | bootstat.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/bootstat.m | 20,825 | utf_8 | 406a9744b6812cd9f9f1eed16ca63e82 | % bootstat() - accumulate surrogate data to assess significance by permutation of some
% measure of two input variables.
%
% If 'distfit','on', fits the psd with a 4th-order polynomial using the
% data kurtosis, as in Ramberg, J.S., Tadikamalla, P.R., Dudewicz E.J.,
% ... |
github | svndl/mrC-master | timefreq.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/timefreq.m | 33,427 | utf_8 | dc70f7b5afd51d05bcf926a934072865 | % timefreq() - compute time/frequency decomposition of data trials. This
% function is a compute-only function called by
% the more complete time/frequency functions newtimef()
% and newcrossf() which also plot timefreq() results.
%
% Usage:
% >> [tf, freqs, times] =... |
github | svndl/mrC-master | pac_cont.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/pac_cont.m | 17,447 | utf_8 | 9b94d431be58419e3715e54645687469 | % pac_cont() - compute phase-amplitude coupling (power of first input
% correlation with phase of second). There is no graphical output
% to this function.
%
% Usage:
% >> pac_cont(x,y,srate);
% >> [pac timesout pvals] = pac_cont(x,y,srate,'key1', 'val1', 'key2', val2' ...);
%
% Inputs:
% x ... |
github | svndl/mrC-master | dftfilt3.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/dftfilt3.m | 7,390 | utf_8 | 7ef2a5114ee38513d5a55a8f38553cb1 | % dftfilt3() - discrete complex wavelet filters
%
% Usage:
% >> [wavelet,cycles,freqresol,timeresol] = dftfilt3( freqs, cycles, srate, varargin)
%
% Inputs:
% freqs - vector of frequencies of interest.
% cycles - cycles array. If cycles=0, then the Hanning tapered Short-term FFT is used.
% If o... |
github | svndl/mrC-master | rsget.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/rsget.m | 1,800 | utf_8 | 47daf6498859ced84787d07802f22789 | % rsget() - get the p-value for a given collection of l-values
% (Ramberg-Schmeiser distribution)
%
% Usage: p = getfit(l, val)
%
% Input:
% l - [l1 l2 l3 l4] l-values for Ramberg-Schmeiser distribution
% val - value in the distribution to get a p-value estimate at
%
% Output:
% p - p-value
%
% Aut... |
github | svndl/mrC-master | rsfit.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/rsfit.m | 6,481 | utf_8 | ea9ce35750ccb745a5f9471fc6554a91 | % rsfit() - find p value for a given value in a given distribution
% using Ramberg-Schmeiser distribution
%
% Usage: >> p = rsfit(x, val)
% >> [p c l chi2] = rsfit(x, val, plot)
%
% Input:
% x - [float array] accumulation values
% val - [float] value to test
% plot - [0|1|2] plot fit. Using... |
github | svndl/mrC-master | timewarp.m | .m | mrC-master/external/eeglab14_1_1b/functions/timefreqfunc/timewarp.m | 3,452 | utf_8 | 910bc9b6a9fca6b6a50908d815239dc6 | % timewarp() - Given two event marker vectors, computes a matrix
% that can be used to warp a time series so that its
% evlatencies match newlatencies. Values of the warped
% timeserie that falls between two frames in the original
% timeserie will be linear ... |
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