add genome annotation

README.md

@@ -18,10 +18,10 @@ This repository provides the **local ontology database** to be used by StructSen
 - **2,683,756 synonyms**
 - Data storage:
   - **SQLite** → structured ontology data (`bioportal.db`) 
-  - **Embeddings** → vector embeddings (to be uploaded)
+  - **ChromaDB** → vector embeddings (see `bioportal_chroma`) for semantic retrieval 
 
 
-Vector embeddings (includes preferred label + definition + synonyms + alternative labels + parent labels + ontology context) are generated using the `BAAI/bge-small-en-v1.5` model to enable high-quality semantic similarity search.
+Vector embeddings (includes label + synonyms + alternative labels + definition) are generated using the `BAAI/bge-large-en-v1.5` model to enable high-quality semantic similarity search.
 
 
 ## Database Schema (Main Tables)

embeddings/embed_indexes.zip → bioportal_chroma/835a42d1-1f16-408d-95f4-48e6a13cfc63/data_level0.bin

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embeddings/ontology_indexes-20260310T133457Z-3-001.zip → bioportal_chroma/835a42d1-1f16-408d-95f4-48e6a13cfc63/header.bin

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