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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 3 new columns ({'barcode', 'species', 'age_group'}) and 1 missing columns ({'ATAC_Xkr4'}).
This happened while the csv dataset builder was generating data using
hf://datasets/simiaoAA/cross-species-aging-data/train_meta_multimodal.csv (at revision 4bd757d9df3de25d61af50ad32745c1504788ad5), ['hf://datasets/simiaoAA/cross-species-aging-data@4bd757d9df3de25d61af50ad32745c1504788ad5/train_feature_names_multimodal.csv', 'hf://datasets/simiaoAA/cross-species-aging-data@4bd757d9df3de25d61af50ad32745c1504788ad5/train_meta_multimodal.csv']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1837, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2369, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2297, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
barcode: string
species: string
age_group: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 608
to
{'ATAC_Xkr4': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1343, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1683, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1839, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 3 new columns ({'barcode', 'species', 'age_group'}) and 1 missing columns ({'ATAC_Xkr4'}).
This happened while the csv dataset builder was generating data using
hf://datasets/simiaoAA/cross-species-aging-data/train_meta_multimodal.csv (at revision 4bd757d9df3de25d61af50ad32745c1504788ad5), ['hf://datasets/simiaoAA/cross-species-aging-data@4bd757d9df3de25d61af50ad32745c1504788ad5/train_feature_names_multimodal.csv', 'hf://datasets/simiaoAA/cross-species-aging-data@4bd757d9df3de25d61af50ad32745c1504788ad5/train_meta_multimodal.csv']
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
ATAC_Xkr4 string |
|---|
ATAC_Rp1 |
ATAC_Sox17 |
ATAC_Mrpl15 |
ATAC_Lypla1 |
ATAC_Tcea1 |
ATAC_Rgs20 |
ATAC_Atp6v1h |
ATAC_Oprk1 |
ATAC_Npbwr1 |
ATAC_Rb1cc1 |
ATAC_Alkal1 |
ATAC_St18 |
ATAC_Pcmtd1 |
ATAC_Sntg1 |
ATAC_Rrs1 |
ATAC_Adhfe1 |
ATAC_2610203C22Rik |
ATAC_Vxn |
ATAC_Mybl1 |
ATAC_Vcpip1 |
ATAC_1700034P13Rik |
ATAC_Sgk3 |
ATAC_Mcmdc2 |
ATAC_Snhg6 |
ATAC_Snord87 |
ATAC_Tcf24 |
ATAC_Ppp1r42 |
ATAC_Cops5 |
ATAC_Cspp1 |
ATAC_Arfgef1 |
ATAC_Cpa6 |
ATAC_Prex2 |
ATAC_A830018L16Rik |
ATAC_Mir6341 |
ATAC_Gm17644 |
ATAC_Sulf1 |
ATAC_Slco5a1 |
ATAC_Prdm14 |
ATAC_Ncoa2 |
ATAC_Tram1 |
ATAC_Lactb2 |
ATAC_Xkr9 |
ATAC_Gm5523 |
ATAC_Eya1 |
ATAC_Msc |
ATAC_Trpa1 |
ATAC_Kcnb2 |
ATAC_Terf1 |
ATAC_Sbspon |
ATAC_4930444P10Rik |
ATAC_Rdh10 |
ATAC_Rpl7 |
ATAC_Stau2 |
ATAC_Ube2w |
ATAC_Eloc |
ATAC_D030040B21Rik |
ATAC_Tmem70 |
ATAC_Ly96 |
ATAC_Jph1 |
ATAC_Gdap1 |
ATAC_Pi15 |
ATAC_Gm16070 |
ATAC_Crispld1 |
ATAC_Crisp4 |
ATAC_Defb44-ps |
ATAC_Defb18 |
ATAC_Defb41 |
ATAC_Tfap2d |
ATAC_Tfap2b |
ATAC_Pkhd1 |
ATAC_4930486I03Rik |
ATAC_Lincmd1 |
ATAC_Mir133b |
ATAC_Il17a |
ATAC_Il17f |
ATAC_Mcm3 |
ATAC_Paqr8 |
ATAC_6720483E21Rik |
ATAC_Efhc1 |
ATAC_Tram2 |
ATAC_Tmem14a |
ATAC_Gsta3 |
ATAC_Gm4956 |
ATAC_Khdc1a |
ATAC_Khdc1c |
ATAC_Khdc1b |
ATAC_Kcnq5 |
ATAC_Rims1 |
ATAC_4933415F23Rik |
ATAC_Mir30a |
ATAC_Mir30c-2 |
ATAC_Ogfrl1 |
ATAC_B3gat2 |
ATAC_Smap1 |
ATAC_Sdhaf4 |
ATAC_Fam135a |
ATAC_Col9a1 |
ATAC_Col19a1 |
ATAC_Lmbrd1 |
ATAC_Adgrb3 |
End of preview.
Cross-Species Aging Data
This dataset repository stores the large matrices, metadata, and feature lists required by the GitHub reproducibility package:
https://github.com/SimiaoZhao/cross-species-aging-resource
See data_manifest.tsv for the expected filenames and their analysis role.
During peer review, access may be restricted to reviewers and editors.
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