Dataset Viewer
Auto-converted to Parquet Duplicate
chrom
large_string
pos
int64
ref
large_string
alt
large_string
AC
int64
AN
int64
AF
float64
consequence
large_string
consequence_cre
large_string
1
10,111
C
A
1
44,330
0.000023
intergenic_variant
pELS
1
10,131
C
A
1
105,956
0.000009
intergenic_variant
pELS
1
10,139
A
T
1
58,784
0.000017
intergenic_variant
pELS
1
10,140
A
C
2
72,760
0.000027
intergenic_variant
pELS
1
10,141
C
G
1
50,842
0.00002
intergenic_variant
pELS
1
10,145
A
T
3
16,958
0.000177
intergenic_variant
pELS
1
10,147
C
G
2
456
0.004386
intergenic_variant
pELS
1
10,148
C
A
1
860
0.001163
intergenic_variant
pELS
1
10,148
C
G
1
858
0.001166
intergenic_variant
pELS
1
10,149
C
A
1
17,024
0.000059
intergenic_variant
pELS
1
10,154
C
A
1
27,646
0.000036
intergenic_variant
pELS
1
10,157
T
G
1
5,704
0.000175
intergenic_variant
pELS
1
10,202
C
G
1
71,460
0.000014
intergenic_variant
pELS
1
10,218
A
G
1
52,108
0.000019
intergenic_variant
pELS
1
10,227
C
T
1
74,614
0.000013
intergenic_variant
pELS
1
10,261
T
A
1
2,540
0.000394
intergenic_variant
pELS_flank
1
10,264
C
A
5
103,276
0.000048
intergenic_variant
pELS_flank
1
10,267
T
C
3
3,058
0.000981
intergenic_variant
pELS_flank
1
10,279
T
G
1
2,154
0.000464
intergenic_variant
pELS_flank
1
10,285
T
C
16
1,168
0.013699
intergenic_variant
pELS_flank
1
10,330
C
A
16
486
0.032922
intergenic_variant
pELS_flank
1
10,357
T
C
5
2,326
0.00215
intergenic_variant
pELS_flank
1
10,367
C
T
33
133,076
0.000248
intergenic_variant
pELS_flank
1
10,369
T
C
5
27,416
0.000182
intergenic_variant
pELS_flank
1
10,370
A
C
2
53,358
0.000037
intergenic_variant
pELS_flank
1
10,393
C
T
8
27,336
0.000293
intergenic_variant
pELS
1
10,400
C
T
9
55,082
0.000163
intergenic_variant
pELS
1
10,409
A
G
1
67,086
0.000015
intergenic_variant
pELS
1
10,414
A
G
1
99,088
0.00001
intergenic_variant
pELS
1
10,420
A
G
1
90,658
0.000011
intergenic_variant
pELS
1
10,426
A
G
2
105,484
0.000019
intergenic_variant
pELS
1
10,428
C
A
3
106,028
0.000028
intergenic_variant
pELS
1
10,430
C
T
1
112,300
0.000009
intergenic_variant
pELS
1
10,432
A
G
1
81,890
0.000012
intergenic_variant
pELS
1
10,432
A
T
5
81,874
0.000061
intergenic_variant
pELS
1
10,435
C
G
1
130,064
0.000008
intergenic_variant
pELS
1
10,436
C
T
2
126,386
0.000016
intergenic_variant
pELS
1
10,437
T
G
5
60,520
0.000083
intergenic_variant
pELS
1
10,438
A
C
7
66,826
0.000105
intergenic_variant
pELS
1
10,438
A
T
7
66,790
0.000105
intergenic_variant
pELS
1
10,440
C
T
1
5,534
0.000181
intergenic_variant
pELS
1
10,441
C
G
4
9,772
0.000409
intergenic_variant
pELS
1
10,442
C
A
2
76,330
0.000026
intergenic_variant
pELS
1
10,442
C
G
2
76,310
0.000026
intergenic_variant
pELS
1
10,442
C
T
2
76,304
0.000026
intergenic_variant
pELS
1
10,443
C
G
4
13,756
0.000291
intergenic_variant
pELS
1
10,444
T
G
5
16,058
0.000311
intergenic_variant
pELS
1
10,445
A
C
10
49,740
0.000201
intergenic_variant
pELS
1
10,445
A
G
15
49,670
0.000302
intergenic_variant
pELS
1
10,445
A
T
3
49,748
0.00006
intergenic_variant
pELS
1
10,447
C
T
1
77,622
0.000013
intergenic_variant
pELS
1
10,448
C
G
1
92,274
0.000011
intergenic_variant
pELS
1
10,452
A
T
2
60,974
0.000033
intergenic_variant
pELS
1
10,454
C
G
2
95,142
0.000021
intergenic_variant
pELS
1
10,466
C
T
1
89,606
0.000011
intergenic_variant
pELS
1
10,467
C
G
1
88,444
0.000011
intergenic_variant
pELS
1
10,467
C
T
1
88,442
0.000011
intergenic_variant
pELS
1
10,469
C
G
60
6,178
0.009712
intergenic_variant
pELS
1
10,472
G
T
1
10,346
0.000097
intergenic_variant
pELS
1
10,473
G
A
473
14,204
0.033301
intergenic_variant
pELS
1
10,475
A
T
7
39,696
0.000176
intergenic_variant
pELS
1
10,482
G
A
2
44,456
0.000045
intergenic_variant
pELS
1
10,483
C
A
3
68,760
0.000044
intergenic_variant
pELS
1
10,483
C
G
1
68,772
0.000015
intergenic_variant
pELS
1
10,484
C
A
4
80,050
0.00005
intergenic_variant
pELS
1
10,486
G
A
1
51,532
0.000019
intergenic_variant
pELS
1
10,486
G
C
2
51,532
0.000039
intergenic_variant
pELS
1
10,489
C
T
3
75,974
0.000039
intergenic_variant
pELS
1
10,490
G
A
19
56,492
0.000336
intergenic_variant
pELS
1
10,491
C
G
1
85,100
0.000012
intergenic_variant
pELS
1
10,492
C
T
1,695
58,920
0.028768
intergenic_variant
pELS
1
10,493
C
G
59
76,216
0.000774
intergenic_variant
pELS
1
10,497
C
T
3
81,540
0.000037
intergenic_variant
pELS
1
10,498
G
T
3
67,988
0.000044
intergenic_variant
pELS
1
10,503
T
C
4
72,046
0.000056
intergenic_variant
pELS
1
10,504
G
C
46
72,162
0.000637
intergenic_variant
pELS
1
10,506
C
G
1
77,026
0.000013
intergenic_variant
pELS
1
10,511
G
C
2
75,410
0.000027
intergenic_variant
pELS
1
10,513
A
G
1
77,566
0.000013
intergenic_variant
pELS
1
10,514
G
C
1
76,640
0.000013
intergenic_variant
pELS
1
10,515
A
C
1
75,396
0.000013
intergenic_variant
pELS
1
10,515
A
G
2
75,410
0.000027
intergenic_variant
pELS
1
10,518
T
C
2
75,128
0.000027
intergenic_variant
pELS
1
10,519
G
A
1
62,986
0.000016
intergenic_variant
pELS
1
10,539
C
A
3
73,734
0.000041
intergenic_variant
pELS
1
10,543
G
A
3
72,944
0.000041
intergenic_variant
pELS
1
10,550
G
A
1
71,906
0.000014
intergenic_variant
pELS
1
10,552
G
A
1
71,350
0.000014
intergenic_variant
pELS
1
10,552
G
C
1
71,350
0.000014
intergenic_variant
pELS
1
10,555
G
C
4
70,304
0.000057
intergenic_variant
pELS
1
10,563
C
A
16
67,110
0.000238
intergenic_variant
pELS
1
10,563
C
T
3
67,120
0.000045
intergenic_variant
pELS
1
10,565
C
T
2
66,612
0.00003
intergenic_variant
pELS
1
10,567
G
A
2
66,144
0.00003
intergenic_variant
pELS
1
10,571
C
T
1
63,484
0.000016
intergenic_variant
pELS
1
10,575
C
G
2
60,562
0.000033
intergenic_variant
pELS
1
10,578
G
C
2
49,720
0.00004
intergenic_variant
pELS
1
10,581
G
A
1
54,720
0.000018
intergenic_variant
pELS
1
10,582
T
C
5
53,586
0.000093
intergenic_variant
pELS
1
10,583
G
A
326
42,092
0.007745
intergenic_variant
pELS
End of preview. Expand in Data Studio

gnomAD v4.1 Variants with Consequence Annotations

This dataset contains SNVs from gnomAD v4.1 genomes joined with variant consequence annotations.

Code: https://github.com/gonzalobenegas/gnomad

Columns

Coordinates

  • chrom: Chromosome (1-22, X, Y)
  • pos: Position (1-based)
  • ref: Reference allele
  • alt: Alternate allele

gnomAD Allele Frequencies

  • AC: Allele count
  • AN: Allele number
  • AF: Allele frequency

Consequence Annotations

Columns from hg38-variant-consequences.

Processing

  • Only PASS variants are included
  • Only biallelic SNVs are included
  • Left join with consequences
  • Sorted by (chrom, pos, ref, alt)

Sources

Downloads last month
12