chrom
large_string | pos
int64 | ref
large_string | alt
large_string | AC
int64 | AN
int64 | AF
float64 | consequence
large_string | consequence_cre
large_string |
|---|---|---|---|---|---|---|---|---|
1
| 10,111
|
C
|
A
| 1
| 44,330
| 0.000023
|
intergenic_variant
|
pELS
|
1
| 10,131
|
C
|
A
| 1
| 105,956
| 0.000009
|
intergenic_variant
|
pELS
|
1
| 10,139
|
A
|
T
| 1
| 58,784
| 0.000017
|
intergenic_variant
|
pELS
|
1
| 10,140
|
A
|
C
| 2
| 72,760
| 0.000027
|
intergenic_variant
|
pELS
|
1
| 10,141
|
C
|
G
| 1
| 50,842
| 0.00002
|
intergenic_variant
|
pELS
|
1
| 10,145
|
A
|
T
| 3
| 16,958
| 0.000177
|
intergenic_variant
|
pELS
|
1
| 10,147
|
C
|
G
| 2
| 456
| 0.004386
|
intergenic_variant
|
pELS
|
1
| 10,148
|
C
|
A
| 1
| 860
| 0.001163
|
intergenic_variant
|
pELS
|
1
| 10,148
|
C
|
G
| 1
| 858
| 0.001166
|
intergenic_variant
|
pELS
|
1
| 10,149
|
C
|
A
| 1
| 17,024
| 0.000059
|
intergenic_variant
|
pELS
|
1
| 10,154
|
C
|
A
| 1
| 27,646
| 0.000036
|
intergenic_variant
|
pELS
|
1
| 10,157
|
T
|
G
| 1
| 5,704
| 0.000175
|
intergenic_variant
|
pELS
|
1
| 10,202
|
C
|
G
| 1
| 71,460
| 0.000014
|
intergenic_variant
|
pELS
|
1
| 10,218
|
A
|
G
| 1
| 52,108
| 0.000019
|
intergenic_variant
|
pELS
|
1
| 10,227
|
C
|
T
| 1
| 74,614
| 0.000013
|
intergenic_variant
|
pELS
|
1
| 10,261
|
T
|
A
| 1
| 2,540
| 0.000394
|
intergenic_variant
|
pELS_flank
|
1
| 10,264
|
C
|
A
| 5
| 103,276
| 0.000048
|
intergenic_variant
|
pELS_flank
|
1
| 10,267
|
T
|
C
| 3
| 3,058
| 0.000981
|
intergenic_variant
|
pELS_flank
|
1
| 10,279
|
T
|
G
| 1
| 2,154
| 0.000464
|
intergenic_variant
|
pELS_flank
|
1
| 10,285
|
T
|
C
| 16
| 1,168
| 0.013699
|
intergenic_variant
|
pELS_flank
|
1
| 10,330
|
C
|
A
| 16
| 486
| 0.032922
|
intergenic_variant
|
pELS_flank
|
1
| 10,357
|
T
|
C
| 5
| 2,326
| 0.00215
|
intergenic_variant
|
pELS_flank
|
1
| 10,367
|
C
|
T
| 33
| 133,076
| 0.000248
|
intergenic_variant
|
pELS_flank
|
1
| 10,369
|
T
|
C
| 5
| 27,416
| 0.000182
|
intergenic_variant
|
pELS_flank
|
1
| 10,370
|
A
|
C
| 2
| 53,358
| 0.000037
|
intergenic_variant
|
pELS_flank
|
1
| 10,393
|
C
|
T
| 8
| 27,336
| 0.000293
|
intergenic_variant
|
pELS
|
1
| 10,400
|
C
|
T
| 9
| 55,082
| 0.000163
|
intergenic_variant
|
pELS
|
1
| 10,409
|
A
|
G
| 1
| 67,086
| 0.000015
|
intergenic_variant
|
pELS
|
1
| 10,414
|
A
|
G
| 1
| 99,088
| 0.00001
|
intergenic_variant
|
pELS
|
1
| 10,420
|
A
|
G
| 1
| 90,658
| 0.000011
|
intergenic_variant
|
pELS
|
1
| 10,426
|
A
|
G
| 2
| 105,484
| 0.000019
|
intergenic_variant
|
pELS
|
1
| 10,428
|
C
|
A
| 3
| 106,028
| 0.000028
|
intergenic_variant
|
pELS
|
1
| 10,430
|
C
|
T
| 1
| 112,300
| 0.000009
|
intergenic_variant
|
pELS
|
1
| 10,432
|
A
|
G
| 1
| 81,890
| 0.000012
|
intergenic_variant
|
pELS
|
1
| 10,432
|
A
|
T
| 5
| 81,874
| 0.000061
|
intergenic_variant
|
pELS
|
1
| 10,435
|
C
|
G
| 1
| 130,064
| 0.000008
|
intergenic_variant
|
pELS
|
1
| 10,436
|
C
|
T
| 2
| 126,386
| 0.000016
|
intergenic_variant
|
pELS
|
1
| 10,437
|
T
|
G
| 5
| 60,520
| 0.000083
|
intergenic_variant
|
pELS
|
1
| 10,438
|
A
|
C
| 7
| 66,826
| 0.000105
|
intergenic_variant
|
pELS
|
1
| 10,438
|
A
|
T
| 7
| 66,790
| 0.000105
|
intergenic_variant
|
pELS
|
1
| 10,440
|
C
|
T
| 1
| 5,534
| 0.000181
|
intergenic_variant
|
pELS
|
1
| 10,441
|
C
|
G
| 4
| 9,772
| 0.000409
|
intergenic_variant
|
pELS
|
1
| 10,442
|
C
|
A
| 2
| 76,330
| 0.000026
|
intergenic_variant
|
pELS
|
1
| 10,442
|
C
|
G
| 2
| 76,310
| 0.000026
|
intergenic_variant
|
pELS
|
1
| 10,442
|
C
|
T
| 2
| 76,304
| 0.000026
|
intergenic_variant
|
pELS
|
1
| 10,443
|
C
|
G
| 4
| 13,756
| 0.000291
|
intergenic_variant
|
pELS
|
1
| 10,444
|
T
|
G
| 5
| 16,058
| 0.000311
|
intergenic_variant
|
pELS
|
1
| 10,445
|
A
|
C
| 10
| 49,740
| 0.000201
|
intergenic_variant
|
pELS
|
1
| 10,445
|
A
|
G
| 15
| 49,670
| 0.000302
|
intergenic_variant
|
pELS
|
1
| 10,445
|
A
|
T
| 3
| 49,748
| 0.00006
|
intergenic_variant
|
pELS
|
1
| 10,447
|
C
|
T
| 1
| 77,622
| 0.000013
|
intergenic_variant
|
pELS
|
1
| 10,448
|
C
|
G
| 1
| 92,274
| 0.000011
|
intergenic_variant
|
pELS
|
1
| 10,452
|
A
|
T
| 2
| 60,974
| 0.000033
|
intergenic_variant
|
pELS
|
1
| 10,454
|
C
|
G
| 2
| 95,142
| 0.000021
|
intergenic_variant
|
pELS
|
1
| 10,466
|
C
|
T
| 1
| 89,606
| 0.000011
|
intergenic_variant
|
pELS
|
1
| 10,467
|
C
|
G
| 1
| 88,444
| 0.000011
|
intergenic_variant
|
pELS
|
1
| 10,467
|
C
|
T
| 1
| 88,442
| 0.000011
|
intergenic_variant
|
pELS
|
1
| 10,469
|
C
|
G
| 60
| 6,178
| 0.009712
|
intergenic_variant
|
pELS
|
1
| 10,472
|
G
|
T
| 1
| 10,346
| 0.000097
|
intergenic_variant
|
pELS
|
1
| 10,473
|
G
|
A
| 473
| 14,204
| 0.033301
|
intergenic_variant
|
pELS
|
1
| 10,475
|
A
|
T
| 7
| 39,696
| 0.000176
|
intergenic_variant
|
pELS
|
1
| 10,482
|
G
|
A
| 2
| 44,456
| 0.000045
|
intergenic_variant
|
pELS
|
1
| 10,483
|
C
|
A
| 3
| 68,760
| 0.000044
|
intergenic_variant
|
pELS
|
1
| 10,483
|
C
|
G
| 1
| 68,772
| 0.000015
|
intergenic_variant
|
pELS
|
1
| 10,484
|
C
|
A
| 4
| 80,050
| 0.00005
|
intergenic_variant
|
pELS
|
1
| 10,486
|
G
|
A
| 1
| 51,532
| 0.000019
|
intergenic_variant
|
pELS
|
1
| 10,486
|
G
|
C
| 2
| 51,532
| 0.000039
|
intergenic_variant
|
pELS
|
1
| 10,489
|
C
|
T
| 3
| 75,974
| 0.000039
|
intergenic_variant
|
pELS
|
1
| 10,490
|
G
|
A
| 19
| 56,492
| 0.000336
|
intergenic_variant
|
pELS
|
1
| 10,491
|
C
|
G
| 1
| 85,100
| 0.000012
|
intergenic_variant
|
pELS
|
1
| 10,492
|
C
|
T
| 1,695
| 58,920
| 0.028768
|
intergenic_variant
|
pELS
|
1
| 10,493
|
C
|
G
| 59
| 76,216
| 0.000774
|
intergenic_variant
|
pELS
|
1
| 10,497
|
C
|
T
| 3
| 81,540
| 0.000037
|
intergenic_variant
|
pELS
|
1
| 10,498
|
G
|
T
| 3
| 67,988
| 0.000044
|
intergenic_variant
|
pELS
|
1
| 10,503
|
T
|
C
| 4
| 72,046
| 0.000056
|
intergenic_variant
|
pELS
|
1
| 10,504
|
G
|
C
| 46
| 72,162
| 0.000637
|
intergenic_variant
|
pELS
|
1
| 10,506
|
C
|
G
| 1
| 77,026
| 0.000013
|
intergenic_variant
|
pELS
|
1
| 10,511
|
G
|
C
| 2
| 75,410
| 0.000027
|
intergenic_variant
|
pELS
|
1
| 10,513
|
A
|
G
| 1
| 77,566
| 0.000013
|
intergenic_variant
|
pELS
|
1
| 10,514
|
G
|
C
| 1
| 76,640
| 0.000013
|
intergenic_variant
|
pELS
|
1
| 10,515
|
A
|
C
| 1
| 75,396
| 0.000013
|
intergenic_variant
|
pELS
|
1
| 10,515
|
A
|
G
| 2
| 75,410
| 0.000027
|
intergenic_variant
|
pELS
|
1
| 10,518
|
T
|
C
| 2
| 75,128
| 0.000027
|
intergenic_variant
|
pELS
|
1
| 10,519
|
G
|
A
| 1
| 62,986
| 0.000016
|
intergenic_variant
|
pELS
|
1
| 10,539
|
C
|
A
| 3
| 73,734
| 0.000041
|
intergenic_variant
|
pELS
|
1
| 10,543
|
G
|
A
| 3
| 72,944
| 0.000041
|
intergenic_variant
|
pELS
|
1
| 10,550
|
G
|
A
| 1
| 71,906
| 0.000014
|
intergenic_variant
|
pELS
|
1
| 10,552
|
G
|
A
| 1
| 71,350
| 0.000014
|
intergenic_variant
|
pELS
|
1
| 10,552
|
G
|
C
| 1
| 71,350
| 0.000014
|
intergenic_variant
|
pELS
|
1
| 10,555
|
G
|
C
| 4
| 70,304
| 0.000057
|
intergenic_variant
|
pELS
|
1
| 10,563
|
C
|
A
| 16
| 67,110
| 0.000238
|
intergenic_variant
|
pELS
|
1
| 10,563
|
C
|
T
| 3
| 67,120
| 0.000045
|
intergenic_variant
|
pELS
|
1
| 10,565
|
C
|
T
| 2
| 66,612
| 0.00003
|
intergenic_variant
|
pELS
|
1
| 10,567
|
G
|
A
| 2
| 66,144
| 0.00003
|
intergenic_variant
|
pELS
|
1
| 10,571
|
C
|
T
| 1
| 63,484
| 0.000016
|
intergenic_variant
|
pELS
|
1
| 10,575
|
C
|
G
| 2
| 60,562
| 0.000033
|
intergenic_variant
|
pELS
|
1
| 10,578
|
G
|
C
| 2
| 49,720
| 0.00004
|
intergenic_variant
|
pELS
|
1
| 10,581
|
G
|
A
| 1
| 54,720
| 0.000018
|
intergenic_variant
|
pELS
|
1
| 10,582
|
T
|
C
| 5
| 53,586
| 0.000093
|
intergenic_variant
|
pELS
|
1
| 10,583
|
G
|
A
| 326
| 42,092
| 0.007745
|
intergenic_variant
|
pELS
|
End of preview. Expand
in Data Studio
gnomAD v4.1 Variants with Consequence Annotations
This dataset contains SNVs from gnomAD v4.1 genomes joined with variant consequence annotations.
Code: https://github.com/gonzalobenegas/gnomad
Columns
Coordinates
chrom: Chromosome (1-22, X, Y)pos: Position (1-based)ref: Reference allelealt: Alternate allele
gnomAD Allele Frequencies
AC: Allele countAN: Allele numberAF: Allele frequency
Consequence Annotations
Columns from hg38-variant-consequences.
Processing
- Only PASS variants are included
- Only biallelic SNVs are included
- Left join with consequences
- Sorted by (chrom, pos, ref, alt)
Sources
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