metadata
license: mit
tags:
- dna
- variant-effect-prediction
- biology
- genomics
gnomAD variants
For more information check out our paper and repository.
Labels
| Label | Meaning |
|---|---|
| True | Rare, singleton (AC=1) |
| False | Common (MAF > 5%) |
Note that the label does not indicate deleteriousness/pathogenicity. This is not suitable for a classification task. We recommend calculating enrichment or rare variants at the tail of model scores.
Usage
- Pandas
import pandas as pd
df = pd.read_parquet("hf://datasets/songlab/gnomad/test.parquet")
- Polars
import polars as pl
df = pl.read_parquet("https://huggingface.co/datasets/songlab/gnomad/resolve/main/test.parquet")
- Datasets
from datasets import load_dataset
dataset = load_dataset("songlab/gnomad", split="test")