Datasets:

songlab
/

omim_traitgym

chrom stringclasses 19 values	pos int64 90.7k 249M	ref stringclasses 4 values	alt stringclasses 4 values	OMIM stringclasses 113 values	consequence stringclasses 12 values	label bool 2 classes	tss_dist int64 0 372k	match_group stringclasses 338 values
1	1,425,822	C	G	null	PLS	false	48	PLS_4
1	1,615,869	C	T	null	PLS	false	35	PLS_0
1	1,659,060	G	A	null	PLS	false	47	PLS_4
1	1,659,114	A	G	null	PLS	false	101	PLS_5
1	2,050,958	T	C	null	5_prime_UTR_variant	false	149	5_prime_UTR_variant_7
1	2,074,688	G	A	null	5_prime_UTR_variant	false	0	5_prime_UTR_variant_2
1	3,437,073	G	A	null	3_prime_UTR_variant	false	17,591	3_prime_UTR_variant_5
1	3,468,692	A	G	null	5_prime_UTR_variant	false	147	5_prime_UTR_variant_7
1	3,650,142	G	A	null	PLS	false	38	PLS_2
1	3,734,754	A	G	null	3_prime_UTR_variant	false	17,695	3_prime_UTR_variant_5
1	3,900,119	A	G	null	PLS	false	101	PLS_5
1	5,886,890	T	C	null	3_prime_UTR_variant	false	104,036	3_prime_UTR_variant_3
1	6,599,812	A	G	null	5_prime_UTR_variant	false	3	5_prime_UTR_variant_5
1	6,623,074	T	C	null	3_prime_UTR_variant	false	1,793	3_prime_UTR_variant_1
1	6,886,655	C	G	null	3_prime_UTR_variant	false	101,123	3_prime_UTR_variant_4
1	6,887,913	C	T	null	3_prime_UTR_variant	false	102,381	3_prime_UTR_variant_4
1	6,888,144	T	C	null	3_prime_UTR_variant	false	102,612	3_prime_UTR_variant_4
1	7,961,859	C	G	MIM 606324	PLS	true	34	PLS_0
1	9,069,886	A	G	null	PLS	false	34	PLS_0
1	9,234,844	C	G	null	5_prime_UTR_variant	false	69	5_prime_UTR_variant_6
1	9,651,702	G	C	null	PLS	false	28	PLS_1
1	9,878,107	A	G	null	PLS	false	68	PLS_6
1	9,943,502	A	T	MIM 608553	5_prime_UTR_variant	true	26	5_prime_UTR_variant_0
1	9,943,503	C	T	MIM 608553	5_prime_UTR_variant	true	27	5_prime_UTR_variant_1
1	11,023,351	G	A	MIM 612069	3_prime_UTR_variant	true	1,206	3_prime_UTR_variant_0
1	11,262,571	G	T	null	PLS	false	19	PLS_3
1	15,526,794	T	G	null	PLS	false	18	PLS_3
1	15,736,187	G	A	null	PLS	false	70	PLS_6
1	16,015,238	T	C	null	3_prime_UTR_variant	false	2,586	3_prime_UTR_variant_2
1	18,107,880	C	T	null	5_prime_UTR_variant	false	81	5_prime_UTR_variant_4
1	18,378,368	A	G	null	3_prime_UTR_variant	false	102,561	3_prime_UTR_variant_4
1	19,251,559	C	G	null	PLS	false	34	PLS_0
1	19,645,836	G	A	null	5_prime_UTR_variant	false	69	5_prime_UTR_variant_6
1	20,070,155	A	G	null	PLS	false	38	PLS_2
1	20,186,547	T	A	null	PLS	false	28	PLS_1
1	20,554,412	A	G	null	3_prime_UTR_variant	false	1,838	3_prime_UTR_variant_1
1	20,720,599	A	T	null	3_prime_UTR_variant	false	2,581	3_prime_UTR_variant_2
1	21,509,427	C	T	MIM 241500	5_prime_UTR_variant	true	0	5_prime_UTR_variant_2
1	22,001,609	C	T	null	PLS	false	47	PLS_4
1	22,093,956	C	T	null	3_prime_UTR_variant	false	17,621	3_prime_UTR_variant_5
1	22,636,557	G	A	null	PLS	false	50	PLS_4
1	23,344,310	G	C	null	5_prime_UTR_variant	false	0	5_prime_UTR_variant_2
1	23,558,289	T	C	null	3_prime_UTR_variant	false	1,211	3_prime_UTR_variant_0
1	23,801,977	C	T	null	3_prime_UTR_variant	false	1,206	3_prime_UTR_variant_0
1	24,538,457	C	T	null	3_prime_UTR_variant	false	17,629	3_prime_UTR_variant_5
1	25,816,825	T	C	MIM 602771	3_prime_UTR_variant	true	1,814	3_prime_UTR_variant_1
1	25,817,440	T	C	null	3_prime_UTR_variant	false	1,199	3_prime_UTR_variant_0
1	26,317,908	C	T	null	PLS	false	49	PLS_4
1	26,370,675	G	A	null	5_prime_UTR_variant	false	69	5_prime_UTR_variant_6
1	26,429,718	G	T	null	3_prime_UTR_variant	false	2,597	3_prime_UTR_variant_2
1	27,383,368	G	T	null	PLS	false	34	PLS_0
1	27,935,082	T	C	null	5_prime_UTR_variant	false	27	5_prime_UTR_variant_0
1	28,233,063	C	G	null	PLS	false	33	PLS_0
1	28,369,580	C	A	null	PLS	false	28	PLS_1
1	28,869,429	G	A	null	3_prime_UTR_variant	false	17,661	3_prime_UTR_variant_5
1	31,413,254	G	C	null	5_prime_UTR_variant	false	40	5_prime_UTR_variant_3
1	31,413,316	C	T	null	PLS	false	102	PLS_5
1	34,985,416	C	T	null	PLS	false	68	PLS_6
1	35,929,514	A	C	null	3_prime_UTR_variant	false	1,203	3_prime_UTR_variant_0
1	36,084,054	G	C	null	PLS	false	39	PLS_2
1	37,514,297	T	G	null	PLS	false	27	PLS_1
1	37,536,650	G	C	null	3_prime_UTR_variant	false	17,642	3_prime_UTR_variant_5
1	37,556,851	C	A	null	PLS	false	67	PLS_6
1	37,595,971	G	T	null	PLS	false	33	PLS_0
1	39,691,588	C	A	null	PLS	false	102	PLS_5
1	43,270,024	T	G	null	5_prime_UTR_variant	false	0	5_prime_UTR_variant_2
1	43,285,638	T	A	null	PLS	false	20	PLS_3
1	44,739,926	T	C	null	5_prime_UTR_variant	false	26	5_prime_UTR_variant_0
1	45,012,761	C	T	null	5_prime_UTR_variant	false	69	5_prime_UTR_variant_6
1	45,015,501	G	T	MIM 176100	3_prime_UTR_variant	true	2,593	3_prime_UTR_variant_2
1	48,472,277	G	A	null	PLS	false	68	PLS_6
1	52,726,410	T	G	null	PLS	false	42	PLS_2
1	53,946,508	T	C	null	5_prime_UTR_variant	false	149	5_prime_UTR_variant_7
1	54,101,698	A	G	null	3_prime_UTR_variant	false	2,596	3_prime_UTR_variant_2
1	55,039,507	C	A	MIM 603776	5_prime_UTR_variant	true	40	5_prime_UTR_variant_3
1	55,040,253	C	T	null	PLS	false	41	PLS_2
1	58,546,759	C	T	null	5_prime_UTR_variant	false	0	5_prime_UTR_variant_2
1	59,296,796	A	G	null	5_prime_UTR_variant	false	0	5_prime_UTR_variant_2
1	59,926,822	C	A	null	PLS	false	48	PLS_4
1	62,263,343	G	A	null	5_prime_UTR_variant	false	80	5_prime_UTR_variant_4
1	65,148,133	T	C	null	PLS	false	69	PLS_6
1	65,148,351	T	C	null	5_prime_UTR_variant	false	147	5_prime_UTR_variant_7
1	65,420,715	T	C	null	5_prime_UTR_variant	false	0	5_prime_UTR_variant_2
1	75,724,883	C	T	null	PLS	false	102	PLS_5
1	75,786,326	G	A	null	PLS	false	69	PLS_6
1	86,993,059	A	G	null	PLS	false	49	PLS_4
1	87,098,238	T	G	null	3_prime_UTR_variant	false	105,228	3_prime_UTR_variant_3
1	90,915,548	T	A	null	3_prime_UTR_variant	false	105,908	3_prime_UTR_variant_3
1	90,916,122	G	A	null	3_prime_UTR_variant	false	105,334	3_prime_UTR_variant_3
1	90,916,206	C	T	MIM 614167	3_prime_UTR_variant	true	105,250	3_prime_UTR_variant_3
1	90,916,786	G	C	MIM 614167	3_prime_UTR_variant	true	104,670	3_prime_UTR_variant_4
1	91,022,191	G	T	MIM 614167	5_prime_UTR_variant	true	80	5_prime_UTR_variant_4
1	91,952,441	C	T	null	5_prime_UTR_variant	false	80	5_prime_UTR_variant_4
1	93,180,876	T	C	null	5_prime_UTR_variant	false	151	5_prime_UTR_variant_7
1	96,823,072	T	C	null	3_prime_UTR_variant	false	100,354	3_prime_UTR_variant_4
1	96,823,152	G	A	null	3_prime_UTR_variant	false	100,434	3_prime_UTR_variant_4
1	100,195,897	T	G	MIM 248600	3_prime_UTR_variant	true	17,623	3_prime_UTR_variant_5
1	109,279,887	T	C	null	3_prime_UTR_variant	false	1,791	3_prime_UTR_variant_1
1	111,619,674	G	C	null	PLS	false	102	PLS_5
1	111,754,860	A	T	null	5_prime_UTR_variant	false	27	5_prime_UTR_variant_1

End of preview. Expand in Data Studio

OMIM regulatory variants

Predictions from all models

Downloads last month: 280

Size of downloaded dataset files:

50.6 kB

Size of the auto-converted Parquet files:

50.6 kB

Number of rows:

3,380

Collection including songlab/omim_traitgym

GPN-Star

Collection

paper: https://www.biorxiv.org/content/10.1101/2025.09.21.677619v1 code: https://github.com/songlab-cal/gpn • 30 items • Updated 22 days ago • 6