| <!DOCTYPE html> |
| <html lang="en"> |
| <head> |
| <meta charset="UTF-8"> |
| <meta name="viewport" content="width=device-width, initial-scale=1.0"> |
| <title>Pathology Analyzer - Agilisium Co-Lab</title> |
| <link rel="stylesheet" href="styles.css?v=2"> |
| <link rel="stylesheet" href="analyzer.css?v=2"> |
| </head> |
| <body> |
| |
| <div class="info-banner" role="region" aria-label="Upload notice"> |
| <div class="banner-content"> |
| <svg width="20" height="20" viewBox="0 0 24 24" fill="none" xmlns="http://www.w3.org/2000/svg" aria-hidden="true"> |
| <circle cx="12" cy="12" r="10" stroke="currentColor" stroke-width="2"/> |
| <line x1="12" y1="8" x2="12" y2="12" stroke="currentColor" stroke-width="2"/> |
| <line x1="12" y1="16" x2="12.01" y2="16" stroke="currentColor" stroke-width="2"/> |
| </svg> |
| <span>Upload de-identified images only</span> |
| </div> |
| </div> |
| <nav class="navbar site-nav nav--solid"> |
| <div class="nav-container"> |
| <div class="nav-logo"> |
| <a href="index.html" class="logo-link"> |
| <img src="newlogo.webp" alt="Agilisium Co-Lab" class="logo-icon"> |
| <div class="logo-text"> |
| <h1>Agilisium</h1> |
| <p class="subtitle">Co-Lab</p> |
| </div> |
| </a> |
| </div> |
| <div class="nav-links"> |
| <a href="index.html" class="nav-link">Home</a> |
| <a href="analyzer.html" class="nav-link active" aria-current="page">Analyzer</a> |
| <a href="challenges.html" class="nav-link">Challenges</a> |
| </div> |
| <div class="nav-actions"> |
| <button class="btn btn-outline">Log in</button> |
| </div> |
| </div> |
| </nav> |
|
|
| <main class="analyzer-main"> |
| |
| <div class="analyzer-hero"> |
| <div class="container"> |
| <div class="hero-content"> |
| <h1 class="hero-title">AI-Powered Pathology Analysis</h1> |
| <p class="hero-subtitle">Upload your pathology images for instant cancer detection and treatment response prediction</p> |
| |
| |
| <div class="process-strip"> |
| <div class="process-step"> |
| <div class="step-icon">📁</div> |
| <div class="step-text"> |
| <div class="step-title">Upload</div> |
| <div class="step-desc">Choose your image</div> |
| </div> |
| </div> |
| <div class="process-arrow">→</div> |
| <div class="process-step"> |
| <div class="step-icon">🔬</div> |
| <div class="step-text"> |
| <div class="step-title">Analyze</div> |
| <div class="step-desc">AI processes image</div> |
| </div> |
| </div> |
| <div class="process-arrow">→</div> |
| <div class="process-step"> |
| <div class="step-icon">🎯</div> |
| <div class="step-text"> |
| <div class="step-title">Results</div> |
| <div class="step-desc">Get insights & trials</div> |
| </div> |
| </div> |
| </div> |
| </div> |
| </div> |
| </div> |
|
|
| <div class="container"> |
| |
| <div class="upload-section" id="uploadSection"> |
| <div class="upload-zone" id="uploadZone" tabindex="0" role="button" aria-label="Upload pathology images"> |
| <div class="upload-content"> |
| <div class="upload-icon"> |
| <svg width="48" height="48" viewBox="0 0 24 24" fill="none" xmlns="http://www.w3.org/2000/svg"> |
| <path d="M14 2H6C4.9 2 4 2.9 4 4V20C4 21.1 4.89 22 5.99 22H18C19.1 22 20 21.1 20 20V8L14 2Z" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/> |
| <path d="M14 2V8H20" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/> |
| <path d="M16 13H8" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/> |
| <path d="M16 17H8" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/> |
| <path d="M10 9H8" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/> |
| </svg> |
| </div> |
| <h2 class="upload-title">Drop your pathology images here</h2> |
| <p class="upload-subtitle">or click to browse multiple files</p> |
| <div class="upload-formats"> |
| <span class="format-tag">PNG</span> |
| <span class="format-tag">JPEG</span> |
| <span class="format-tag">WSI</span> |
| </div> |
| <div class="upload-note">PNG/JPEG/WSI • Please de-identify before upload</div> |
| <button class="browse-button" id="browseButton" type="button" aria-label="Browse files"> |
| <svg width="20" height="20" viewBox="0 0 24 24" fill="none" xmlns="http://www.w3.org/2000/svg" aria-hidden="true"> |
| <path d="M21 15V19C21 19.5304 20.7893 20.0391 20.4142 20.4142C20.0391 20.7893 19.5304 21 19 21H5C4.46957 21 3.96086 20.7893 3.58579 20.4142C3.21071 20.0391 3 19.5304 3 19V15" stroke="currentColor" stroke-width="2"/> |
| <polyline points="7,10 12,15 17,10" stroke="currentColor" stroke-width="2"/> |
| <line x1="12" y1="15" x2="12" y2="3" stroke="currentColor" stroke-width="2"/> |
| </svg> |
| Browse Files |
| </button> |
| </div> |
| <input type="file" id="fileInput" accept=".jpg,.jpeg,.png,.tiff" multiple aria-label="Select pathology image files"> |
| </div> |
|
|
| <div class="file-preview" id="filePreview" style="display: none;"> |
| <div class="preview-header"> |
| <h3 class="preview-title">Selected Images</h3> |
| <div class="file-count" id="fileCount"></div> |
| </div> |
| <div class="preview-list" id="previewList"> |
| |
| </div> |
| <div class="preview-actions"> |
| <button class="btn btn-outline" id="addMoreFiles"> |
| <span class="btn-icon">+</span> |
| Add More Images |
| </button> |
| <button class="btn btn-danger" id="clearAllFiles"> |
| <span class="btn-icon">×</span> |
| Clear All |
| </button> |
| </div> |
| </div> |
|
|
| <button class="btn btn-primary analyze-btn" id="analyzeBtn" disabled> |
| <span class="btn-icon"> |
| <svg width="20" height="20" viewBox="0 0 24 24" fill="none" xmlns="http://www.w3.org/2000/svg"> |
| <path d="M9 12L11 14L15 10" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"/> |
| <path d="M21 12C21 16.9706 16.9706 21 12 21C7.02944 21 3 16.9706 3 12C3 7.02944 7.02944 3 12 3C16.9706 3 21 7.02944 21 12Z" stroke="currentColor" stroke-width="2"/> |
| </svg> |
| </span> |
| <span class="btn-text">Analyze Images</span> |
| </button> |
| </div> |
|
|
| |
| <div class="loading-section" id="loadingSection" style="display: none;"> |
| <div class="loading-content"> |
| <div class="loading-header"> |
| <div class="loading-spinner"> |
| <div class="spinner-ring"></div> |
| </div> |
| <h2 class="loading-title">Analyzing your pathology images...</h2> |
| <p class="loading-subtitle">This may take a few moments while our AI processes the images</p> |
| </div> |
| |
| |
| <div class="progress-container"> |
| <div class="progress-bar"> |
| <div class="progress-fill" id="progressFill"></div> |
| </div> |
| <div class="progress-text" id="progressText">Starting analysis...</div> |
| </div> |
| |
| |
| <div class="progress-steps"> |
| <div class="progress-step" id="step1"> |
| <div class="step-indicator"> |
| <div class="step-circle"></div> |
| </div> |
| <div class="step-content"> |
| <div class="step-title">Image Preprocessing</div> |
| <div class="step-desc">Optimizing image quality and format</div> |
| </div> |
| </div> |
| <div class="progress-step" id="step2"> |
| <div class="step-indicator"> |
| <div class="step-circle"></div> |
| </div> |
| <div class="step-content"> |
| <div class="step-title">Feature Extraction</div> |
| <div class="step-desc">Identifying cellular patterns and structures</div> |
| </div> |
| </div> |
| <div class="progress-step" id="step3"> |
| <div class="step-indicator"> |
| <div class="step-circle"></div> |
| </div> |
| <div class="step-content"> |
| <div class="step-title">AI Classification</div> |
| <div class="step-desc">Analyzing cancer indicators and biomarkers</div> |
| </div> |
| </div> |
| <div class="progress-step" id="step4"> |
| <div class="step-indicator"> |
| <div class="step-circle"></div> |
| </div> |
| <div class="step-content"> |
| <div class="step-title">Trial Matching</div> |
| <div class="step-desc">Finding relevant clinical trials</div> |
| </div> |
| </div> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="results-section" id="resultsSection" style="display: none;"> |
| <div class="results-header"> |
| <div class="header-content"> |
| <h1 class="results-title">Analysis Complete</h1> |
| <p class="results-subtitle">Your pathology image has been successfully analyzed</p> |
| </div> |
| <div class="action-buttons"> |
| <button class="btn btn-primary" id="saveCase"> |
| <span class="btn-icon">💾</span> |
| <span class="btn-text">Save Case</span> |
| </button> |
| <button class="btn btn-outline" id="createChallenge"> |
| <span class="btn-icon">🎯</span> |
| <span class="btn-text">Create Challenge</span> |
| </button> |
| <button class="btn btn-outline" id="exportTrials"> |
| <span class="btn-icon">📊</span> |
| <span class="btn-text">Export Trials</span> |
| </button> |
| <button class="btn btn-outline" id="analyzeAnother"> |
| <span class="btn-icon">🔄</span> |
| <span class="btn-text">Analyze Another</span> |
| </button> |
| </div> |
| </div> |
|
|
| <div class="results-grid"> |
| |
| <div class="image-panel"> |
| <div class="image-card"> |
| <div class="image-header"> |
| <h3 class="image-title">Pathology Images</h3> |
| <div class="image-selector" id="imageSelector" style="display: none;"> |
| <select id="imageSelect" class="image-select"> |
| |
| </select> |
| </div> |
| <div class="image-actions"> |
| <button class="image-action" id="zoomIn" title="Zoom In"> |
| <svg width="16" height="16" viewBox="0 0 24 24" fill="none"> |
| <circle cx="11" cy="11" r="8" stroke="currentColor" stroke-width="2"/> |
| <path d="M21 21L16.65 16.65" stroke="currentColor" stroke-width="2"/> |
| <line x1="11" y1="8" x2="11" y2="14" stroke="currentColor" stroke-width="2"/> |
| <line x1="8" y1="11" x2="14" y2="11" stroke="currentColor" stroke-width="2"/> |
| </svg> |
| </button> |
| <button class="image-action" id="zoomOut" title="Zoom Out"> |
| <svg width="16" height="16" viewBox="0 0 24 24" fill="none"> |
| <circle cx="11" cy="11" r="8" stroke="currentColor" stroke-width="2"/> |
| <path d="M21 21L16.65 16.65" stroke="currentColor" stroke-width="2"/> |
| <line x1="8" y1="11" x2="14" y2="11" stroke="currentColor" stroke-width="2"/> |
| </svg> |
| </button> |
| <button class="image-action" id="fitScreen" title="Fit to Screen"> |
| <svg width="16" height="16" viewBox="0 0 24 24" fill="none"> |
| <path d="M8 3H5C3.9 3 3 3.9 3 5V8M21 8V5C21 3.9 20.1 3 19 3H16M16 21H19C20.1 21 21 20.1 21 19V16M3 16V19C3 20.1 3.9 21 5 21H8" stroke="currentColor" stroke-width="2"/> |
| </svg> |
| </button> |
| <button class="image-action" id="downloadOverlay" title="Download Heatmap"> |
| <svg width="16" height="16" viewBox="0 0 24 24" fill="none"> |
| <path d="M21 15V19C21 19.5304 20.7893 20.0391 20.4142 20.4142C20.0391 20.7893 19.5304 21 19 21H5C4.46957 21 3.96086 20.7893 3.58579 20.4142C3.21071 20.0391 3 19.5304 3 19V15" stroke="currentColor" stroke-width="2"/> |
| <polyline points="7,10 12,15 17,10" stroke="currentColor" stroke-width="2"/> |
| <line x1="12" y1="15" x2="12" y2="3" stroke="currentColor" stroke-width="2"/> |
| </svg> |
| </button> |
| </div> |
| </div> |
| <div class="image-container"> |
| <img id="analyzedImage" alt="Analyzed pathology image" /> |
| <canvas id="heatmapOverlay"></canvas> |
| </div> |
| <div class="image-info"> |
| <div class="info-item"> |
| <span class="info-label">Filename:</span> |
| <span class="info-value" id="imageFileName">sample_breast_wsi.jpg</span> |
| </div> |
| <div class="info-item"> |
| <span class="info-label">Resolution:</span> |
| <span class="info-value" id="imageResolution">2048×2048</span> |
| </div> |
| <div class="info-item"> |
| <span class="info-label">Analyzed:</span> |
| <span class="info-value" id="analyzedTime">2 minutes ago</span> |
| </div> |
| </div> |
| </div> |
| |
| <div class="heatmap-controls"> |
| <div class="control-card"> |
| <div class="control-header"> |
| <h4 class="control-title">Heatmap Overlay</h4> |
| <label class="toggle-switch"> |
| <input type="checkbox" id="heatmapToggle" checked> |
| <span class="toggle-slider"></span> |
| </label> |
| </div> |
| <div class="control-content"> |
| <div class="slider-group"> |
| <label for="opacitySlider" class="slider-label">Opacity</label> |
| <div class="slider-container"> |
| <input type="range" id="opacitySlider" min="0" max="100" value="70" aria-label="Heatmap opacity"> |
| <span class="slider-value" id="opacityValue">70%</span> |
| </div> |
| </div> |
| </div> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="results-panel"> |
| |
| <div class="result-card diagnosis-card"> |
| <div class="card-header"> |
| <h3 class="card-title">Diagnosis</h3> |
| <div class="card-badge" id="diagnosisBadge">Cancer Detected</div> |
| </div> |
| <div class="card-content"> |
| <div class="diagnosis-summary"> |
| <div class="diagnosis-item"> |
| <span class="item-label">Cancer Present:</span> |
| <span class="item-value positive" id="cancerStatus">Yes</span> |
| </div> |
| <div class="diagnosis-item"> |
| <span class="item-label">Confidence:</span> |
| <span class="item-value confidence" id="confidenceValue">94.2%</span> |
| </div> |
| </div> |
| <div class="diagnosis-explanation" id="diagnosisExplanation"> |
| Analysis indicates invasive ductal carcinoma with well-defined tumor boundaries. High cellular density and irregular nuclear morphology support malignant classification. |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="result-card chemo-card"> |
| <div class="card-header"> |
| <h3 class="card-title">Treatment Response</h3> |
| <div class="card-badge positive" id="chemoBadge">Likely Responsive</div> |
| </div> |
| <div class="card-content"> |
| <div class="chemo-summary"> |
| <div class="chemo-item"> |
| <span class="item-label">Chemotherapy Response:</span> |
| <span class="item-value likely" id="chemoResponse">Likely Responsive</span> |
| </div> |
| </div> |
| <div class="chemo-explanation" id="chemoExplanation"> |
| Tumor characteristics suggest good response to standard chemotherapy protocols. High proliferation markers and hormone receptor status indicate favorable treatment outcomes. |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="result-card risk-card"> |
| <div class="card-header"> |
| <h3 class="card-title">Risk Assessment</h3> |
| <div class="card-badge high-risk" id="riskBadge">HIGH RISK</div> |
| </div> |
| <div class="card-content"> |
| <div class="risk-summary"> |
| <div class="risk-score"> |
| <div class="score-circle"> |
| <span class="score-value" id="riskScore">87</span> |
| <span class="score-label">/100</span> |
| </div> |
| <div class="score-details"> |
| <div class="score-category" id="riskCategory">HIGH RISK</div> |
| <div class="score-description">Advanced stage with aggressive characteristics</div> |
| </div> |
| </div> |
| </div> |
| </div> |
| </div> |
|
|
| |
| <div class="result-card trials-card"> |
| <div class="card-header"> |
| <h3 class="card-title">Matched Clinical Trials</h3> |
| <div class="card-badge">3 trials found</div> |
| </div> |
| <div class="card-content"> |
| <div class="trial-filters"> |
| <div class="filter-group"> |
| <span class="filter-label">Phase:</span> |
| <div class="filter-chips"> |
| <button class="filter-chip active" data-phase="all">All</button> |
| <button class="filter-chip" data-phase="1">Phase I</button> |
| <button class="filter-chip" data-phase="2">Phase II</button> |
| <button class="filter-chip" data-phase="3">Phase III</button> |
| </div> |
| </div> |
| <div class="filter-group"> |
| <span class="filter-label">Status:</span> |
| <div class="filter-chips"> |
| <button class="filter-chip active" data-status="all">All</button> |
| <button class="filter-chip" data-status="recruiting">Recruiting</button> |
| <button class="filter-chip" data-status="active">Active</button> |
| </div> |
| </div> |
| <div class="filter-group"> |
| <span class="filter-label">Distance:</span> |
| <div class="filter-chips"> |
| <button class="filter-chip active" data-distance="all">All</button> |
| <button class="filter-chip" data-distance="lt50">< 50 km</button> |
| <button class="filter-chip" data-distance="lt200">< 200 km</button> |
| <button class="filter-chip" data-distance="remote">Remote</button> |
| </div> |
| </div> |
| <div class="filter-group"> |
| <span class="filter-label">Biomarkers:</span> |
| <div class="filter-chips"> |
| <button class="filter-chip active" data-biomarker="all">All</button> |
| <button class="filter-chip" data-biomarker="her2">HER2+</button> |
| <button class="filter-chip" data-biomarker="erpr">ER/PR+</button> |
| <button class="filter-chip" data-biomarker="tnbc">TNBC</button> |
| </div> |
| </div> |
| </div> |
| |
| <div class="trials-list" id="trialsList"> |
| |
| </div> |
| </div> |
| </div> |
| </div> |
| </div> |
| </div> |
| </div> |
| </main> |
|
|
| |
| <footer class="disclaimer-footer" role="contentinfo"> |
| <div class="container"> |
| <p>Research/Education only — not a medical device</p> |
| </div> |
| </footer> |
|
|
| |
| <div class="modal" id="createChallengeModal" role="dialog" aria-labelledby="challengeModalTitle" aria-hidden="true"> |
| <div class="modal-content"> |
| <div class="modal-header"> |
| <h2 id="challengeModalTitle">Create New Challenge</h2> |
| <button class="modal-close" id="closeChallengeModal" aria-label="Close modal">×</button> |
| </div> |
| <div class="modal-body"> |
| <form id="challengeForm"> |
| <div class="form-group"> |
| <label for="challengeTitle">Challenge Title</label> |
| <input type="text" id="challengeTitle" required placeholder="e.g., Breast Cancer Classification Challenge"> |
| </div> |
| <div class="form-group"> |
| <label for="challengeDescription">Description</label> |
| <textarea id="challengeDescription" required placeholder="Describe the challenge objectives and requirements..."></textarea> |
| </div> |
| <div class="form-group"> |
| <label for="challengeDifficulty">Difficulty Level</label> |
| <select id="challengeDifficulty" required> |
| <option value="Beginner">Beginner</option> |
| <option value="Intermediate">Intermediate</option> |
| <option value="Advanced">Advanced</option> |
| <option value="Expert">Expert</option> |
| </select> |
| </div> |
| <div class="form-actions"> |
| <button type="button" class="btn btn-secondary" id="cancelChallenge">Cancel</button> |
| <button type="submit" class="btn btn-primary">Create Challenge</button> |
| </div> |
| </form> |
| </div> |
| </div> |
| </div> |
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| <div class="toast" id="toast" role="alert" aria-live="polite"></div> |
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| <div id="loginModal" class="modal" style="display: none;"> |
| <div class="modal-content"> |
| <div class="modal-header"> |
| <h2>Sign In Required</h2> |
| <button class="modal-close" id="modalClose" aria-label="Close modal">×</button> |
| </div> |
| <div class="modal-body"> |
| <p>Please sign in to access this feature.</p> |
| <div class="modal-actions"> |
| <a href="login.html" class="btn btn-primary">Sign In</a> |
| <button class="btn btn-secondary" id="demoLoginBtn">Login as Demo</button> |
| </div> |
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| <script src="auth.js"></script> |
| <script src="script.js"></script> |
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