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Tags
list
8571
2
null
7946
1
null
What kind of graph should I create to illustrate my data? I would use a scatterplot - it would give you an idea about the type of relationship between the data. It is important to identify if the relationship is linear or not, before calculating correlation between the measurements.
null
CC BY-SA 2.5
null
2011-03-21T15:39:29.850
2011-03-21T15:39:29.850
null
null
2635
null
8572
1
8876
null
24
7329
I know a fair amount about fitting continuous parameters particularly gradient-based methods, but not much about fitting discrete parameters. What are commonly used MCMC algorithms/techniques for fitting discrete parameters? Are there algorithms which are both fairly general and fairly powerful? Are there algorithms w...
What MCMC algorithms/techniques are used for discrete parameters?
CC BY-SA 2.5
null
2011-03-21T15:51:51.340
2011-03-31T16:45:44.557
2011-03-31T14:59:59.527
1146
1146
[ "bayesian", "markov-chain-montecarlo" ]
8573
1
8580
null
2
12079
Probability distribution of two classes is given by $N(5,1)$ and $N(6,1)$ where $N(\mu,\sigma^2)$: $$f(x) = \frac{1}{\sqrt{2\pi \sigma^2}} e^{-\frac{(x-\mu)^2}{2\sigma^2}} $$ - How to classify them, and see error rate? I am doing this in MATLAB Taking 500 samples of each distribution and tagging them depending whe...
Bayes classifier of two normal distributions in MATLAB
CC BY-SA 2.5
null
2011-03-21T16:06:07.347
2016-10-17T13:42:52.167
2011-03-21T18:32:43.573
3681
3681
[ "bayesian", "classification", "matlab" ]
8574
2
null
8570
6
null
James Gentle's Computational Statistics (2009). James Gentle's Matrix algebra: theory, computations, and applications in statistics‎ (2007), more so towards the end of the book, the beginning is great too but it's not exactly what you're looking for. Christopher M. Bishop's Pattern Recognition (2006). Hastie et al.'s T...
null
CC BY-SA 2.5
null
2011-03-21T17:29:40.023
2011-03-21T17:29:40.023
null
null
2660
null
8576
5
null
null
0
null
[Python](https://www.python.org/) ([Wikipedia page](https://en.wikipedia.org/wiki/Python_%28programming_language%29)) is a general purpose programming language designed for ease of use. It is a commonly used platform for machine learning. Two very popular threads concerned with using Python for statistics and machine l...
null
CC BY-SA 3.0
null
2011-03-21T17:40:28.580
2016-01-15T23:24:07.973
2016-01-15T23:24:07.973
7290
-1
null
8577
4
null
null
0
null
Python is a programming language commonly used for machine learning. Use this tag for any *on-topic* question that (a) involves `Python` either as a critical part of the question or expected answer, & (b) is not *just* about how to use `Python`.
null
CC BY-SA 4.0
null
2011-03-21T17:40:28.580
2019-10-02T16:00:15.173
2019-10-02T16:00:15.173
121522
2660
null
8578
5
null
null
0
null
[Principal component analysis](https://en.wikipedia.org/wiki/Principal_component_analysis) is a technique to decompose an array of numerical data into a set of orthogonal vectors (uncorrelated linear combinations of the variables) called principal components. The first few principal components often suffice to grasp ne...
null
CC BY-SA 3.0
null
2011-03-21T17:46:43.223
2017-07-23T04:14:37.080
2017-07-23T04:14:37.080
7290
28666
null
8579
4
null
null
0
null
Principal component analysis (PCA) is a linear dimensionality reduction technique. It reduces a multivariate dataset to a smaller set of constructed variables preserving as much information (as much variance) as possible. These variables, called principal components, are linear combinations of the input variables.
null
CC BY-SA 3.0
null
2011-03-21T17:46:43.223
2016-03-28T10:21:26.183
2016-03-28T10:21:26.183
3277
2660
null
8580
2
null
8573
2
null
Here's how I have done this in matlab: ``` mu = [mu1,mu2];sigma = [sigma1,sigma2]; %group them %suppose you get your test data from somewhere. %for kicks, I put random data in: xtest = randn(2*n,1); %OP example code has the labels in the data var; ack deviance = bsxfun(@minus,xtest,mu); %tbc deviance = bsxfun(@r...
null
CC BY-SA 2.5
null
2011-03-21T18:19:28.450
2011-03-21T18:19:28.450
null
null
795
null
8581
1
8613
null
13
610
### Context: I'm a Psychology PhD student. As with many psychology PhD students, I know how to perform various statistical analyses using statistical software, up to techniques such as PCA, classification trees, and cluster analysis. But it's not really satisfying because though I can explain why I did an analysis a...
Transition from using statistical software to understanding mathematical equations?
CC BY-SA 3.0
null
2011-03-21T18:33:17.083
2017-11-27T13:03:22.367
2020-06-11T14:32:37.003
-1
3827
[ "references", "notation", "software" ]
8583
1
8584
null
17
18550
I have conducted an analysis in which I have modeled different variance components. When reporting the results in a table, it is much more concise to report standard deviations instead of variances. So, this brings me to the question - is there ever a reason to report variance instead of standard deviation? Is it ever ...
When would it be appropriate to report variance instead of standard deviation?
CC BY-SA 2.5
null
2011-03-21T19:51:20.863
2021-02-17T00:02:48.980
null
null
2750
[ "standard-deviation", "variance", "tables" ]
8584
2
null
8583
20
null
If you report the mean, then it is more appropriate to report the standard deviation as it is expressed in the same unity. Think about dimensional homogeneity in physics. Moreover, it is easier for the reader to consider confidence intervals (for large n, in order to use the Central Limit Theorem and consider a normal ...
null
CC BY-SA 2.5
null
2011-03-21T19:57:14.420
2011-03-21T19:57:14.420
null
null
1351
null
8585
2
null
8583
10
null
This is similar (but not equivalent). Nonetheless, standard deviation is expressed in the same units as the variable whereas the units of the variance are those of the variable to the power two. This makes standard deviation easier to interpret.
null
CC BY-SA 4.0
null
2011-03-21T19:57:27.323
2021-02-17T00:02:48.980
2021-02-17T00:02:48.980
311558
3019
null
8586
1
8589
null
9
387
I have a few hundred estimates of a parameter calculated from two different models and I would like to know if these parameters have different variances. What is a straightforward test for comparing the variances of these parameters? (straightforward meaning, least assumptions).
How can I test $H_0:\sigma^2_1=\sigma^2_2$?
CC BY-SA 2.5
null
2011-03-21T20:22:14.803
2011-04-03T06:51:57.360
2011-03-21T21:34:42.577
2750
2750
[ "hypothesis-testing", "variance", "mean" ]
8589
2
null
8586
8
null
For comparing variances, Wilcox suggests a percentile bootstrap method. See [chapter 5.5.1 of 'Introduction to Robust Estimation and Hypothesis Testing'](http://books.google.com/books?id=_tAJr4ooOM8C&lpg=PR1&dq=Introduction%20to%20Robust%20Estimation%20and%20Hypothesis%20Testing&pg=PA170#v=onepage&q&f=false). This is a...
null
CC BY-SA 2.5
null
2011-03-21T21:36:33.820
2011-03-24T17:17:31.463
2011-03-24T17:17:31.463
795
795
null
8590
1
null
null
13
25035
I come from the social sciences, where p < 0.05 is pretty much the norm, with p < 0.1 and p < 0.01 also showing up, but I was wondering: what fields of study, if any, use lower p-values as a common standard?
Examples of studies using p < 0.001, p < 0.0001 or even lower p-values?
CC BY-SA 2.5
null
2011-03-21T21:39:32.833
2021-05-12T07:15:55.597
null
null
3582
[ "statistical-significance", "p-value" ]
8591
1
null
null
7
5036
How do probability distributions of continuous random variables transform under functions? I.e. I have a random variable, X, drawn from a normal distribution with mean 0 and variance 1. What is the probability distribution associated with sin(X)? ![Histograms mimicking probability density functions of X and sin(X)](htt...
Operations on probability distributions of continuous random variables
CC BY-SA 3.0
null
2011-03-21T16:57:30.150
2013-09-30T19:50:09.047
2020-06-11T14:32:37.003
-1
3830
[ "distributions", "probability" ]
8593
2
null
8590
9
null
My opinion is that it does (and should) not depend on the field of study. For example, you may well work at a lower significance level than $p<0.001$ if, for example, you are trying to replicate a study with historical or well-established results (I can think of several studies on the [Stroop effect](http://en.wikipedi...
null
CC BY-SA 2.5
null
2011-03-21T22:14:36.940
2011-03-21T22:14:36.940
null
null
930
null
8595
2
null
4086
-2
null
you have 5 years of data and 40 observations per year. Why don't you post them on the web and allow us to actually answer this at ground zero rather than philosophizing at 500 miles high. I look forward to the numbers. WE have seen data like this for example the number of customers who trade in their time sharing week ...
null
CC BY-SA 2.5
null
2011-03-21T23:19:35.030
2011-03-21T23:19:35.030
null
null
3382
null
8596
2
null
8590
8
null
It might be rare for anyone to use a pre-specified alpha level lower than, say, 0.01, but it is not nearly as rare that people claim an implied alpha of less than 0.01 in the mistaken belief that an observed P value of less than 0.01 is the same as a Neyman-Pearson alpha of less than 0.01. Fisher's P values are not the...
null
CC BY-SA 3.0
null
2011-03-21T23:26:06.033
2013-04-07T15:18:05.777
2013-04-07T15:18:05.777
7290
1679
null
8598
1
8602
null
5
6379
I'm working on a problem as follows for a course that I'm auditing: > Suppose a 95% symmetric t-interval is applied to estimate a mean, but the sample data are non-normal. Then the probability that the confidence interval covers the mean is not necessarily equal to 0.95. Use a Monte Carlo experiment to estimat...
Monte Carlo experiment to estimate coverage probability
CC BY-SA 4.0
null
2011-03-21T23:43:26.520
2019-01-28T07:48:16.197
2019-01-28T07:48:16.197
128677
null
[ "r", "self-study", "monte-carlo", "simulation" ]
8599
2
null
6498
-3
null
An ARIMA model is simply a weighted average. It answers the double question; - How many period (k )should I use to compute a weighted average and - Precisely what are the k weights It answers the maiden's prayer to determine how to adjust to previous values ( and previous values ALONE ) in order to project the ...
null
CC BY-SA 2.5
null
2011-03-21T23:53:18.980
2011-03-21T23:53:18.980
null
null
3382
null
8601
2
null
8598
1
null
You have several issues with your code: - Your mean(UCL < 0 & LCL > 0) is decidedly strange, and in particular is failing because UCL is coming out positive so you are taking the mean of an empty set. A $\chi^2$ distribution takes only positive values. - (since solved) You have UCL less than LCL, which is a slightly...
null
CC BY-SA 2.5
null
2011-03-22T00:36:10.603
2011-03-22T07:20:49.733
2011-03-22T07:20:49.733
2958
2958
null
8602
2
null
8598
6
null
I disagree with Henry - I think you should be dividing by sqrt(n), because it's a confidence interval for the mean. You also have to add a `df = n-1` argument to your qt calls. And the last line should be `mean(LCL < 2 & UCL > 2)`. This is because 2 is the true mean, and you're interested in the condition that 2 is in ...
null
CC BY-SA 2.5
null
2011-03-22T02:49:38.337
2011-03-22T02:49:38.337
null
null
3835
null
8603
2
null
8566
0
null
Naive Bayes and Logistic Regression (Classification) are both linear classifiers. If you remove all misclassified instances, then you will allow an infinite number of separators to have 0 training error. In the case of the logistic regression, this translate to your information matrix being singular (The information ma...
null
CC BY-SA 2.5
null
2011-03-22T02:53:50.613
2011-03-22T02:53:50.613
null
null
3834
null
8604
1
null
null
54
36528
I admit I'm relatively new to propensity scores and causal analysis. One thing that's not obvious to me as a newcomer is how the "balancing" using propensity scores is mathematically different from what happens when we add covariates in a regression? What's different about the operation, and why is it (or is it) better...
How are propensity scores different from adding covariates in a regression, and when are they preferred to the latter?
CC BY-SA 2.5
null
2011-03-22T03:41:20.293
2022-03-31T17:38:50.513
null
null
3836
[ "regression", "multivariate-analysis", "causality", "propensity-scores" ]
8605
1
8612
null
26
57156
I would like to perform column-wise normalization of a matrix in R. Given a matrix `m`, I want to normalize each column by dividing each element by the sum of the column. One (hackish) way to do this is as follows: ``` m / t(replicate(nrow(m), colSums(m))) ``` Is there a more succinct/elegant/efficient way to achieve ...
Column-wise matrix normalization in R
CC BY-SA 2.5
null
2011-03-22T04:17:39.163
2014-04-02T04:30:31.847
2011-03-23T20:16:41.383
1537
1537
[ "r", "data-transformation", "normalization", "matrix" ]
8606
1
null
null
2
271
I am working on a stopping rule for an optimization algorithm that produces an upper bound and lower bound for the objective value of an optimization problem. In my case, the lower bound is deterministic, but the upper bound is an estimate derived from $N$ data points $UB_1, UB_2... UB_N$ with mean $\widehat{UB}$ and s...
Designing a stopping rule using a hypothesis test
CC BY-SA 3.0
null
2011-03-22T04:28:52.787
2011-06-29T01:37:30.327
2011-06-28T17:41:17.213
null
3572
[ "hypothesis-testing", "optimization" ]
8607
2
null
8541
6
null
Short answer: Gibbs or Metropolis-Hastings-within-Gibbs (MCMC) should work just fine on joint distributions and full conditional distributions that are mixed products of pmfs and pdfs. If you're doing MCMC, just make sure that sampling from the candidate distributions gives you values in the right domain. Long answer: ...
null
CC BY-SA 2.5
null
2011-03-22T04:41:00.800
2011-03-22T04:50:36.987
2011-03-22T04:50:36.987
3831
3831
null
8608
1
8647
null
2
1325
I am reading this example, but could you explain a little more. I don't get the part where it says "then we Normalize"... I know ``` P(sun) * P(F=bad|sun) = 0.7*0.2 = 0.14 P(rain)* P(F=bad|rain) = 0.3*0.9 = 0.27 ``` But where do they get ``` W P(W | F=bad) ----------------- sun 0.34 rain 0.66 ``` ![enter ...
Decision network example
CC BY-SA 2.5
null
2011-03-22T04:58:01.640
2011-04-29T00:58:38.457
2011-04-29T00:58:38.457
3911
3681
[ "probability", "bayesian", "conditional-probability" ]
8610
2
null
8604
20
null
The short answer is that propensity scores are not any better than the equivalent ANCOVA model, particularly with regard to causal interpretation. Propensity scores are best understood as a data reduction method. They are an effective means to reduce many covariates into a single score that can be used to adjust an ef...
null
CC BY-SA 3.0
null
2011-03-22T05:19:25.640
2016-01-27T15:06:15.753
2016-01-27T15:06:15.753
485
485
null
8611
1
8638
null
4
805
I have two different columns of data which are recorded in different configurations and I want to show the users that these two records varie (data is time in seconds). The dataset is not of the same size as shown below. The end users are all experienced people in stats and math. My question is how can I plot a graph ...
How to show differences between two univariate datasets graphically?
CC BY-SA 2.5
null
2011-03-22T05:21:30.313
2011-03-22T17:53:05.827
2011-03-22T16:38:59.353
919
3270
[ "data-visualization", "matlab", "gnuplot" ]
8612
2
null
8605
45
null
This is what sweep and scale are for. ``` sweep(m, 2, colSums(m), FUN="/") scale(m, center=FALSE, scale=colSums(m)) ``` Alternatively, you could use recycling, but you have to transpose it twice. ``` t(t(m)/colSums(m)) ``` Or you could construct the full matrix you want to divide by, like you did in your question. H...
null
CC BY-SA 3.0
null
2011-03-22T06:07:21.883
2014-04-02T04:30:31.847
2014-04-02T04:30:31.847
3601
3601
null
8613
2
null
8581
10
null
### Overview: - My impression is that your experience is common to a lot of students in the social sciences. - The starting point is a motivation to learn. - You can go down either self-taught or formal instruction routes. ### Formal instruction: There are many options in this regard. You might consider a ma...
null
CC BY-SA 3.0
null
2011-03-22T06:18:34.707
2017-11-27T13:03:22.367
2017-11-27T13:03:22.367
22047
183
null
8614
1
8622
null
1
2388
I am trying to determine if a given noise from a compass sensor is time-correlated (it is supposed to be!) and for that I tried to compute the cross correlation between the noise signal and the time of sampling using Matlab xcorr() function. However, I am getting a random value indicating that it is not time-correlated...
How to determine if a given signal is time-correlated?
CC BY-SA 2.5
null
2011-03-22T06:54:59.047
2015-01-25T15:09:19.667
null
null
null
[ "time-series", "matlab", "cross-correlation" ]
8615
2
null
8606
3
null
You should take the difference between upper and lower, then t-test migh be more suitable than with ratios... Anyway, if the probability to reject the null wrongly is $1-\alpha$ the probability to accept it wrongly won't be $\alpha$, if you want to control the error of accepting the null wrongly you have to specify on...
null
CC BY-SA 2.5
null
2011-03-22T07:17:13.800
2011-03-22T07:37:55.537
2011-03-22T07:37:55.537
223
223
null
8616
2
null
8566
6
null
The following is not restricted to NB + LogRes Overfitting = Loss of generalization. When you train a model on dataset you generally assume that the data you use for training has a similar structure than the data the model is applied to later (the general assumption of predicting the future from the past). So if you re...
null
CC BY-SA 2.5
null
2011-03-22T07:39:48.263
2011-03-22T07:39:48.263
2017-04-13T12:44:32.747
-1
264
null
8617
1
8618
null
19
1842
An increase in the number of cases and deaths occurs during epidemics (sudden increase in numbers) due to a virus circulation (like West Nile Virus in USA in 2002) or decreasing resistance of people or contamination of food or water or increase in the number of mosquitoes. These epidemics will present as outliers whic...
Can data cleaning worsen the results of statistical analysis?
CC BY-SA 2.5
null
2011-03-22T07:56:30.263
2011-08-16T07:34:59.977
2011-03-22T22:55:17.803
null
2956
[ "time-series", "forecasting", "epidemiology", "outliers" ]
8618
2
null
8617
13
null
It actually depends on the purpose of your research. In my opinion, there could be several: - You want to understand what are the typical factors that causes cases and deaths and that are not affected by epidemic periods and factors that causes epidemics (so you are interested in typical not force major probabilities)...
null
CC BY-SA 2.5
null
2011-03-22T08:51:11.383
2011-03-22T08:51:11.383
null
null
2645
null
8619
2
null
8617
16
null
I personally wouldn't call this "data cleaning". I think of data cleaning more in the sense of data editing - cleaning up inconsistencies in the data set (e.g. a record has reported age of 1000, or a person aged 4 is a single parent, etc.). The presence of a real effect in your data does not make it "messy" (to the ...
null
CC BY-SA 2.5
null
2011-03-22T09:24:20.850
2011-03-22T09:24:20.850
null
null
2392
null
8620
2
null
8608
4
null
This is a straight forward analysis of Bayes Theorem. Now Bayes Theorem reads: $$P(H|F,I)=\frac{P(H|I)P(F|H,I)}{P(F|I)}$$ So in your example you have two "hypothesis" SUN and RAIN. $F$ stands for the the forecast, and $I$ for the prior information (or assumptions). The "I" has not been included explicitly in your qu...
null
CC BY-SA 2.5
null
2011-03-22T09:45:20.753
2011-03-22T09:45:20.753
null
null
2392
null
8621
2
null
8611
2
null
Rather than a boxplot, I'd use a strip chart, since both data sets are small and it will be easy to see each data point.
null
CC BY-SA 2.5
null
2011-03-22T10:10:29.543
2011-03-22T10:10:29.543
null
null
686
null
8622
2
null
8614
5
null
Despite the fact that there were a lot of discussion on the relative topics (though no any answer provided), I would like to add some ideas from my own teaching and model-building experience. It would be also very useful for you to study/read any (good) textbook in econometrics or time-series analysis first (just to sp...
null
CC BY-SA 2.5
null
2011-03-22T11:00:05.527
2011-03-22T11:00:05.527
null
null
2645
null
8623
2
null
8617
6
null
The role of "data cleansing" is to identify when "our laws (model) do not work". Adjusting for Outliers or abnormal data points serve to allow us to get "robust estimates" of the parameters in the current model that we are entertaining. These "outliers" if untreated permit an unwanted distortion in the model parameters...
null
CC BY-SA 2.5
null
2011-03-22T11:18:37.447
2011-03-24T12:21:41.397
2017-04-13T12:44:21.160
-1
3382
null
8624
2
null
4604
2
null
To me, it sounds more like you want a conditional frequency, as a conditional probability has no "error" so to speak. The only error from a probability is from either from a mathematical approximation, or a mathematical error in the calculation. Once you make this conceptual distinction, I think finding the exact mea...
null
CC BY-SA 2.5
null
2011-03-22T11:32:23.003
2011-03-22T11:32:23.003
null
null
2392
null
8625
1
8671
null
16
10229
I was fiddling with PCA and LDA methods and I am stuck at a point, I have a feeling that it is so simple that I can't see it. Within-class ($S_W$) and between-class ($S_B$) scatter matrices are defined as: $$ S_W = \sum_{i=1}^C\sum_{t=1}^N(x_t^i - \mu_i)(x_t^i - \mu_i)^T $$ $$ S_B = \sum_{i=1}^CN(\mu_i-\mu)(\mu_i-\mu)^...
Deriving total (within class + between class) scatter matrix
CC BY-SA 3.0
null
2011-03-22T12:43:24.383
2018-01-15T12:16:49.350
2018-01-15T12:16:49.350
28666
760
[ "discriminant-analysis" ]
8626
2
null
8581
2
null
I understand your difficulty as I have a similar problem when I try to do something new in statistics (I'm also a grad student, but in a different field). I have found examining the R code quite useful to get an idea how something is calculated. For example, I have been recently learning how to use `kmeans` clustering ...
null
CC BY-SA 2.5
null
2011-03-22T13:11:06.113
2011-03-22T13:30:20.690
2017-05-23T12:39:26.203
-1
2635
null
8627
2
null
8604
7
null
A likely obtuse reference, but if you by chance have access to it I would recommend reading this book chapter ([Apel and Sweeten, 2010](http://dx.doi.org/10.1007/978-0-387-77650-7_26)). It is aimed at social scientists and so perhaps not as mathematically rigorous as you seem to want, but it should go into enough depth...
null
CC BY-SA 2.5
null
2011-03-22T13:14:03.273
2011-03-22T13:14:03.273
2017-04-13T12:44:41.980
-1
1036
null
8628
2
null
8617
6
null
To give you a general answer to your question, let me parapharse one of my old general managers: the opportunities of research are found in the outliers of the model you are fitting. The situation is similar to the experiment performed my Robert Millikan in determining the charge of an electron. Decades after winning ...
null
CC BY-SA 2.5
null
2011-03-22T13:25:28.850
2011-03-22T13:25:28.850
null
null
3805
null
8629
2
null
8581
3
null
I get the impression that you think that you can get insight into a statistical equation by programming it into either R or C++; you can't. To understand a statistical equation, find an "undergraduate" textbook with lots of homework problems at the end of each chapter that contains the equation, and then do the homewor...
null
CC BY-SA 2.5
null
2011-03-22T13:58:45.933
2011-03-22T13:58:45.933
null
null
3805
null
8630
1
null
null
19
3223
I have carried out a principal components analysis of six variables $A$, $B$, $C$, $D$, $E$ and $F$. If I understand correctly, unrotated PC1 tells me what linear combination of these variables describes/explains the most variance in the data and PC2 tells me what linear combination of these variables describes the nex...
Principal component analysis "backwards": how much variance of the data is explained by a given linear combination of the variables?
CC BY-SA 3.0
null
2011-03-22T14:00:23.313
2016-08-24T22:58:15.310
2015-01-28T09:21:45.423
28666
3845
[ "variance", "pca", "r-squared", "covariance-matrix" ]
8631
1
null
null
7
571
I want to understand how to make calculations on the prevalence of a disease in a country population and the impact that the element of average life expectancy (of those suffering with the disease at time of diagnosis) has on this calculation. Are there any 'best practice' papers on making epidemiology calculations?
How would life expectancy impact the calculation of disease prevalence?
CC BY-SA 2.5
null
2011-03-22T14:12:22.203
2012-09-02T15:56:25.523
2012-09-02T15:56:25.523
919
3844
[ "epidemiology" ]
8632
1
null
null
1
3274
The [ISO VIM](http://www.iso.org/sites/JCGM/VIM/JCGM_200e.html) defines them as: > measurement method: generic description of a logical organization of operations used in a measurement. measurement procedure: detailed description of a measurement according to one or more measurement principles and to a given measu...
What's the difference between "measurement method" and "measurement procedure"?
CC BY-SA 2.5
null
2011-03-22T14:28:02.757
2011-06-30T07:27:45.080
2011-03-23T08:23:14.400
2645
3823
[ "teaching", "terminology", "measurement", "methodology" ]
8633
1
null
null
2
640
If I find that my covariate (reaction time) alters over the length of my experiment (e.g. due to fatigue), can I somehow build that into my model? So what I am saying is that the effect of my covariate is not constant (between subjects and within subjects).
ANCOVA with multiple instances of the between-subject covariate
CC BY-SA 2.5
null
2011-03-22T14:57:53.010
2011-08-25T01:34:29.183
2011-03-22T22:51:11.193
null
3822
[ "repeated-measures", "ancova" ]
8634
1
8648
null
9
7852
Given two bivariate normal distributions $P \equiv \mathcal{N}(\mu_p, \Sigma_p)$ and $Q \equiv \mathcal{N}(\mu_q, \Sigma_q)$, I am trying to calculate the Jensen-Shannon divergence between them, defined (for the discrete case) as: $JSD(P\|Q) = \frac{1}{2} (KLD(P\|M)+ KLD(Q\|M))$ where $KLD$ is the Kullback-Leibler...
Jensen-Shannon divergence for bivariate normal distributions
CC BY-SA 2.5
null
2011-03-22T16:15:30.263
2022-10-17T03:56:20.170
2011-03-23T01:53:13.153
2970
3843
[ "normal-distribution", "distance-functions", "information-theory" ]
8637
2
null
2181
11
null
Almost the same question was asked recently on the [ISOSTAT](http://www.lawrence.edu/fast/jordanj/isostat.html) listserver (frequented by college professors): > If you had a strong undergraduate student who was interested in learning about various multivariate methods (e.g. PCA, MANOVA, discriminant analysis, ...) is ...
null
CC BY-SA 2.5
null
2011-03-22T17:21:14.290
2011-03-22T17:21:14.290
null
null
919
null
8638
2
null
8611
3
null
I would try a q-q plot if you have enough data; ``` %make fake data; x1 = randn(1000,1) .^ 2;x2 = (1.3 * randn(2000,1)).^2; %which quantiles? alphas = linspace(0,1,100);alphas = alphas(2:end-1); q1 = interp1(linspace(0,1,numel(x1)),sort(x1),alphas,'linear'); q2 = interp1(linspace(0,1,numel(x2)),sort(x2),alphas,'linear'...
null
CC BY-SA 2.5
null
2011-03-22T17:21:44.560
2011-03-22T17:53:05.827
2011-03-22T17:53:05.827
795
795
null
8639
1
8641
null
4
160
Greetings, Is it possible to use evidence in a Winbug model? For example, a random variable in a model has been observed, and I'd like to update the other variables in the model, pretty much the same update perfomed in tools like Smile, or other inference software. Gibbs sampling is supposed to use observed values in...
Can I insert an observation (evidence) to a Winbugs model?
CC BY-SA 2.5
null
2011-03-22T17:23:12.153
2016-09-12T19:30:54.530
2016-09-12T19:30:54.530
28666
3280
[ "inference", "bugs" ]
8641
2
null
8639
2
null
Of course it's possible to use evidence from observations in WinBUGS! Try working through any of the examples in the documentation that comes with the program to see how.
null
CC BY-SA 2.5
null
2011-03-22T18:58:10.133
2011-03-22T18:58:10.133
null
null
449
null
8642
1
8643
null
8
5966
I want to perform a single-tail test on a single sample of real numbers (N~100) against an expected value. The population is known to be not normally distributed. So from what I've read about stats, I can do my testing using - Wilcoxon signed rank test, or - bootstrap shifted sample data to obtain the null distribu...
What method is preferred, a bootstrapping test or a nonparametric rank-based test?
CC BY-SA 3.0
null
2011-03-22T18:58:38.307
2023-05-09T17:07:10.133
2017-04-13T12:44:28.873
-1
3847
[ "hypothesis-testing", "nonparametric", "bootstrap", "wilcoxon-signed-rank" ]
8643
2
null
8642
1
null
You just described the difference. No one can know in advance outcome differences because it greatly depends on the nature of your data. Do you know the non-normal distribution you're working with? If so, you could simulate some results and see what the typical error rates for the different tests were and how they ...
null
CC BY-SA 2.5
null
2011-03-22T19:52:01.620
2011-03-22T19:52:01.620
null
null
601
null
8644
2
null
6772
4
null
Following whuber's [link to Wikipedia](http://en.wikipedia.org/wiki/Fieller%27s_theorem#Case_1) you have > Assume that $a$ and $b$ are jointly normally distributed, and that $b$ is not too near zero (i.e. more specifically, that the standard error of $b$ is small compared to $b$) $$\operatorname{Var} \left( \...
null
CC BY-SA 2.5
null
2011-03-22T20:22:25.160
2011-03-22T20:22:25.160
null
null
2958
null
8645
2
null
8614
0
null
Following DC's excellent summary of available approaches let me add: The question "if a given noise from a compass sensor is time-correlated " raises suggestions as how to analyse it in order to make a conclusion. In the absence of user-specified possible support/explanatory series one is left with approaches that ente...
null
CC BY-SA 2.5
null
2011-03-22T21:48:37.590
2011-03-31T22:39:28.480
2011-03-31T22:39:28.480
3382
3382
null
8647
2
null
8608
5
null
Research has shown that people have difficulty reasoning in terms of probabilities but can do so accurately when presented with the same questions in terms of frequencies. So, let's consider a closely related setting where the probabilities are expressed as numbers of occurrences: - In 100 similar situations, it rain...
null
CC BY-SA 2.5
null
2011-03-22T22:45:45.143
2011-03-22T22:45:45.143
null
null
919
null
8648
2
null
8634
9
null
The midpoint measure $\newcommand{\bx}{\mathbf{x}} \newcommand{\KL}{\mathrm{KL}}M$ is a mixture distribution of the two multivariate normals, so it does not have the form that you give in the original post. Let $\varphi_p(\bx)$ be the probability density function of a $\mathcal{N}(\mu_p, \Sigma_p)$ random vector and $\...
null
CC BY-SA 2.5
null
2011-03-22T23:34:52.187
2011-03-26T14:30:10.350
2017-04-13T12:44:53.513
-1
2970
null
8649
1
8650
null
10
1158
I'm using a tutorial I found and plotting mean values along with the standard errors to show my data. But I'm having a problem discussing the results. My plot is as shown below: some of the standard errors (shown as a error bar) vary much and some of them are very close to zero. ![enter image description here](https://...
What is standard error used for?
CC BY-SA 3.0
null
2011-03-23T00:50:44.210
2014-03-12T11:51:58.750
2013-08-16T18:41:32.250
601
3270
[ "data-visualization", "standard-error" ]
8650
2
null
8649
10
null
Error bars in general are to convince the plot reader that the differences she/he sees on the plot are statistically significant. In an approximation, you may imagine a small gaussian which $\pm1\sigma$ range is shown as this error bar -- "visual integration" of a product of two such gaussians is more-less a chance tha...
null
CC BY-SA 2.5
null
2011-03-23T01:06:09.497
2011-03-23T01:06:09.497
null
null
null
null
8651
1
null
null
2
342
Is there a way to find the Spearman correlation between two Weibull distributions? I need it as a parameter in a copula function for the joint Weibull distribution. I learned that using the Pearson correlation, which I can easily obtain from the variances and cross variances of the given spectra, is not reliable with c...
Spearman correlation of two Weibull distributions
CC BY-SA 3.0
null
2011-03-23T02:48:08.760
2018-07-22T17:27:49.700
2018-07-22T17:27:49.700
11887
3854
[ "correlation", "spearman-rho", "copula", "weibull-distribution" ]
8652
2
null
8649
6
null
As mbq says, error bars are a way of letting your readers to get a feel if the differences between two groups are significant - i.e. if the variation within each of your groups is small enough to believe that the difference you've found for the mean between your groups. All else being equal, larger error bars mean mor...
null
CC BY-SA 2.5
null
2011-03-23T04:01:23.240
2011-03-23T04:01:23.240
null
null
3732
null
8653
1
null
null
4
94
I am interested in estimating how many subjects should be included in a brain imaging study. Although the design is a fairly straight forward cross-sectional comparison, there are a number of tweakable image processing steps between the raw image and the processed image in which we carry out pixel-wise comparisons. I'v...
How to model the relationship between number of subjects per group, derived using standard power analysis methods, and study specific parameters
CC BY-SA 2.5
null
2011-03-23T05:45:42.340
2011-05-26T21:50:31.813
null
null
3855
[ "modeling", "model-selection", "statistical-power", "cross-section" ]
8655
2
null
8604
25
null
One big difference is that regression "controls for" those characteristics in a linear fashion. Matching by propensity scores eliminates the linearity assumption, but, as some observations may not be matched, you may not be able to say anything about certain groups. For example, if you are studying a worker training pr...
null
CC BY-SA 4.0
null
2011-03-23T06:18:03.407
2020-04-12T03:57:27.420
2020-04-12T03:57:27.420
116587
401
null
8656
2
null
8632
2
null
Actually if drop measurement and leave only or narrowed question: What's the difference between method and procedure? A nice answer could be found [here](http://wiki.answers.com/Q/What_is_the_difference_between_a_method_and_a_procedure). From this answer we may conclude that method is a wider concept (more abstract) as...
null
CC BY-SA 3.0
null
2011-03-23T07:35:19.457
2011-06-30T07:27:45.080
2011-06-30T07:27:45.080
2116
2645
null
8657
1
8679
null
0
81
which is the % of population with vote rights(above 18yo for example). Can u point me to some papers which talks about voting and ages?
vote population
CC BY-SA 2.5
null
2011-03-23T08:37:03.867
2011-03-23T18:45:20.533
null
null
3856
[ "population" ]
8658
2
null
8632
1
null
If you are familiar with programming, you could perhaps think of it as a method (not to be confused with a logical part of some code) being a brief description of an algorithm in pseudo-code, whereas a procedure is a specific implementation with exact syntax. Admitted that this is not a perfect metaphor but I think it ...
null
CC BY-SA 2.5
null
2011-03-23T08:41:36.297
2011-03-23T08:41:36.297
null
null
3014
null
8659
2
null
8642
6
null
This answer may be helpful, and/or it may be annoying. Your welcome and my apologies at the same time :) One thing to remember when using a normal distribution, is that it has a set of sufficient statistics, namely the mean and variance. What this indicates is that only the mean and variance matter in the inference. ...
null
CC BY-SA 2.5
null
2011-03-23T09:18:53.263
2011-03-23T09:18:53.263
null
null
2392
null
8660
2
null
8502
4
null
This is "taylor made" almost for a Bayesian regression. First of all, there is nothing "fundamentally wrong" with what you suggest. You result may not be optimal by some mathematical standard, but it will almost certainly be optimal time wise. Most other methods will involve much more time than a straight multiplica...
null
CC BY-SA 2.5
null
2011-03-23T09:47:40.163
2011-03-23T09:47:40.163
null
null
2392
null
8661
1
8667
null
56
195140
I'm trying to undertake a logistic regression analysis in `R`. I have attended courses covering this material using STATA. I am finding it very difficult to replicate functionality in `R`. Is it mature in this area? There seems to be little documentation or guidance available. Producing odds ratio output seems to requi...
Logistic Regression in R (Odds Ratio)
CC BY-SA 2.5
null
2011-03-23T09:59:21.777
2022-10-14T12:56:01.700
2011-03-23T10:18:41.703
2824
2824
[ "r", "logistic", "odds-ratio" ]
8662
1
8674
null
14
3929
I have the sample population of a certain signal's registered amplitude maxima. Population is about 15 million samples. I produced a histogram of the population, but cannot guess the distribution with such a histogram. EDIT1: File with raw sample values is here: [raw data](http://hotfile.com/dl/111583549/5c73384/TDETQ_...
Need help identifying a distribution by its histogram
CC BY-SA 2.5
null
2011-03-23T10:20:57.830
2023-03-13T15:24:53.887
2011-03-24T04:54:13.743
2820
2820
[ "distributions", "histogram" ]
8663
1
null
null
2
1274
I used `summary.formula` from `Hmisc` with continuous `Age` and binary outcome `O` with `test=TRUE`. This returned a p-value for `Age` predicting `O` (if I understand this correctly). I then ran a `glm` using `Age` and `O` (univariate logistic regression), which returned a different p-value. I thought that the p-valu...
Chi-squared versus logistic regression
CC BY-SA 2.5
null
2011-03-23T10:21:41.670
2011-03-24T16:12:05.140
2011-03-24T16:12:05.140
null
2824
[ "logistic", "chi-squared-test", "p-value" ]
8664
1
null
null
2
2442
I want to carry out a power analysis on a one group repeated measures experiment using G*power. I have a group of subjects who tested a set of products. Each subject test one time the products. Hence, I have one observation per cell. To test the product effect, I used a two anova model with subjects as random effect ...
How to estimate correlation among repeated measures?
CC BY-SA 2.5
null
2011-03-23T10:35:06.573
2011-05-26T20:50:30.690
2011-03-23T13:49:22.730
2116
3858
[ "correlation", "repeated-measures" ]
8665
2
null
8649
2
null
Plenty of researchers have trouble interpreting these graphs. See [http://scienceblogs.com/cognitivedaily/2008/07/31/most-researchers-dont-understa-1/](http://scienceblogs.com/cognitivedaily/2008/07/31/most-researchers-dont-understa-1/) for a more detailed elaboration.
null
CC BY-SA 3.0
null
2011-03-23T10:54:10.860
2013-08-16T18:13:06.457
2013-08-16T18:13:06.457
-1
1048
null
8666
2
null
8661
46
null
You are right that R's output usually contains only essential information, and more needs to be calculated separately. ``` N <- 100 # generate some data X1 <- rnorm(N, 175, 7) X2 <- rnorm(N, 30, 8) X3 <- abs(rnorm(N, 60, 30)) Y <- 0.5*X1 - 0.3*X2 - 0.4*X3 + 10 + rnorm(N, 0, 12) # dichotomize Y and do ...
null
CC BY-SA 2.5
null
2011-03-23T11:27:58.007
2011-03-23T11:27:58.007
2017-04-13T12:44:56.303
-1
1909
null
8667
2
null
8661
47
null
if you want to interpret the estimated effects as relative odds ratios, just do `exp(coef(x))` (gives you $e^\beta$, the multiplicative change in the odds ratio for $y=1$ if the covariate associated with $\beta$ increases by 1). For profile likelihood intervals for this quantity, you can do ``` require(MASS) exp(cbind(...
null
CC BY-SA 2.5
null
2011-03-23T11:28:45.930
2011-03-23T11:28:45.930
null
null
1979
null
8668
2
null
8662
1
null
I am not sure why you would want to classify a sample to a specific distribution with such a large sample size; parsimony, comparing it to another sample, looking for physical interpretation of the paramters? Most statistical packages(R, SAS, Minitab) allow one to plot data on a graph that yields a straight line if the...
null
CC BY-SA 2.5
null
2011-03-23T11:43:00.033
2011-03-23T11:43:00.033
null
null
3805
null
8669
1
9376
null
2
202
I currently have two sets of input variables say, $X$ and $Y$ with one output variable $Z$. That is: $$Z = a_0 + a_1X_1 + a_2X_2... + a_{11}X_{11} = b_0 + b_1Y_1 + b_2Y_2 + b_3Y_3 + b_4Y_4$$ I have the independent $X$ and $Y$ values but don't have the dependent variable $Z$ values. Is there anyway that I can estimate c...
Two sets of input variables for the same unknown dependent variable
CC BY-SA 2.5
null
2011-03-23T12:02:12.467
2011-04-09T18:43:50.403
2011-03-23T13:47:27.210
2116
3859
[ "regression" ]
8670
2
null
8669
0
null
This sounds to me like problem where a canonical correlation study might help. In canonical correlation, we are given a random vector W that is partitioned into two sub-random vectors X and Y; and the issue is to find linear combinations of the two subvectors that have maximal correlation and are orthogonal to one anot...
null
CC BY-SA 2.5
null
2011-03-23T12:21:50.093
2011-03-23T12:21:50.093
null
null
3805
null
8671
2
null
8625
9
null
If you assume $$\frac{1}{N}\sum_{t=1}^Nx_t^{i}=\mu_i$$ Then $$\sum_{i=1}^C\sum_{t=1}^N(x_t^i-\mu_i)(\mu_i-\mu)^T=\sum_{i=1}^C\left(\sum_{t=1}^N(x_t^i-\mu_i)\right)(\mu_i-\mu)^T=0$$ and formula holds. You deal with the second term in the similar way.
null
CC BY-SA 2.5
null
2011-03-23T14:12:28.437
2011-03-23T14:12:28.437
null
null
2116
null
8672
2
null
8661
23
null
The UCLA stats page has [a nice walk-through](https://stats.oarc.ucla.edu/r/dae/logit-regression/) of performing logistic regression in R. It includes a brief section on calculating odds ratios.
null
CC BY-SA 4.0
null
2011-03-23T14:39:55.110
2022-10-14T12:56:01.700
2022-10-14T12:56:01.700
370174
124
null
8673
2
null
5346
3
null
I found [this article by Algina & Olejnik (1984)](http://epm.sagepub.com/content/44/1/39.short). The abstract: > The Welch-James procedure may be used to test hypotheses on means, when independent samples from populations with heterogeneous variances are available. Until recently the complexity of the avail...
null
CC BY-SA 3.0
null
2011-03-23T14:55:49.300
2016-09-05T14:04:50.877
2016-09-05T14:04:50.877
100369
3861
null
8674
2
null
8662
23
null
Use `fitdistrplus`: Here's the [CRAN link](http://cran.r-project.org/web/packages/fitdistrplus/index.html) to `fitdistrplus`. Here's the [old vignette link](https://r-forge.r-project.org/scm/viewvc.php/*checkout*/www/fitdistrplusE.pdf?revision=19&root=riskassessment&pathrev=21) for `fitdistrplus`. If the vignette link ...
null
CC BY-SA 4.0
null
2011-03-23T15:04:06.113
2023-03-13T15:24:53.887
2023-03-13T15:24:53.887
11887
2775
null
8675
2
null
8642
1
null
The inferences generated by Wilcoxon vs bootstrapping cannot be compared as they pertain to different data. Wilcoxon is a rank test, thus generates inferences that pertain to ranks. Bootstrapping applies to the raw data, and thus generates inferences that pertain to the raw data. If you dislike bootstrapping but want i...
null
CC BY-SA 2.5
null
2011-03-23T15:33:25.353
2011-03-23T15:33:25.353
null
null
364
null
8676
2
null
8630
5
null
Let the total variance, $T$, in a data set of vectors be the sum of squared errors (SSE) between the vectors in the data set and the mean vector of the data set, $$T = \sum_{i} (x_i-\bar{x}) \cdot (x_i-\bar{x})$$ where $\bar{x}$ is the mean vector of the data set, $x_i$ is the ith vector in the data set, and $\cdot$ ...
null
CC BY-SA 3.0
null
2011-03-23T15:34:35.570
2015-01-28T09:23:33.247
2015-01-28T09:23:33.247
28666
3864
null
8677
1
8687
null
6
1037
I just came by [a post talking about](http://www.investuotojas.eu/?p=464) networks for displaying correlations: ![enter image description here](https://i.stack.imgur.com/BhyaZ.png) Is this a known method? Can someone shed some insights into it? (I'm wondering about how useful it might be, and when.)
References for using networks to display correlations?
CC BY-SA 2.5
null
2011-03-23T15:47:58.887
2011-03-23T19:55:45.100
2011-03-23T19:55:45.100
26
253
[ "data-visualization", "correlation" ]
8678
2
null
8677
4
null
Surprisingly, as a [search of Google Images](http://www.google.com/images?q=multiple+correlation) indicates, such graphs do not appear to be in common use to study or explain multiple correlations. That's a pity, because I'm sure much of this theory can be reduced to simple operations on graphs. Nevertheless, this gra...
null
CC BY-SA 2.5
null
2011-03-23T16:36:48.973
2011-03-23T16:36:48.973
null
null
919
null
8679
2
null
8657
3
null
You can find minimum voting ages in [Wikipedia](http://en.wikipedia.org/wiki/Voting_age). Most large countries use 18, except for Brazil and Indonesia. You can find country population by age in the [U.S Census Bureau International Data Base](http://www.census.gov/ipc/www/idb/). It does not seem to use 18 as a break po...
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CC BY-SA 2.5
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2011-03-23T16:42:38.700
2011-03-23T18:45:20.533
2011-03-23T18:45:20.533
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Maybe you should look into "stacking". Or even "feature-weighed stacking". The former is using a cross validation method to determine the weights you should use to linearly stack them. The latter is using "meta-parameters" to give even more insight on how to weight the parameters depending on what is being predicted. T...
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2011-03-23T16:55:09.020
2011-03-23T16:55:09.020
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The problem is more easily solved when you rewrite things a little bit: Y = y X = [x, 1 ] then Y = A*X A one time-solution is found by calculating V = X' * X and C = X' * Y note the V should have size N-by-N and C a size of N-by-M. The parameters you're looking for are then given by: A = inv(V) * C Since both V and C ...
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CC BY-SA 2.5
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2011-03-23T17:29:07.060
2011-03-23T17:29:07.060
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First, you need to know what a p-value is. A p-value is the probability that you would observe results as extreme, or more extreme, than the ones you have, if the null hypothesis was in fact true. The reason you aren't getting the same p-value in your two tests, is that you aren't examining the same null hypotheses un...
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2011-03-23T17:41:08.740
2011-03-23T17:41:08.740
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Lasso is indeed a good one. Simple things like starting with none, and adding them one by one sorted on 'usefullness' (via cross-validation) do also work quite well in practice. This is sometimes called stagewise feedforward selection. Note that the subset selection problem is fairly independent on the type of classif...
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2011-03-23T17:46:42.810
2011-03-23T17:46:42.810
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You are retaining $p$ (=3 in this case) values for each regression: the estimated coefficients. If you are willing to retain $p(p+1)$ (=12) values per regression, you can weight your results in a way that is equivalent to having all the data and performing a weighted least squares regression with them en masse. The an...
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CC BY-SA 2.5
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2011-03-23T17:56:30.697
2011-03-23T17:56:30.697
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