| model,latent,is_fm,metric,mean,std,n_seeds |
| AE,10,False,$R^2$,0.9751567130714905,0.0028978722619505204,5 |
| AE,10,False,Energy distance,0.602109596400855,0.056689583240678056,5 |
| AE,10,False,MMD-RBF,0.04663010384758994,0.0031812248856748636,5 |
| AE,10,False,KNN purity (k=10),0.517170430616726,0.005253007198865796,5 |
| AE,10,False,KNN purity (normalized),0.46457076656279905,0.01912404803361041,5 |
| AE,10,False,Pathway Spearman,0.9377639621526604,0.01250629627170627,5 |
| AE,10,False,Coexpression Spearman,0.8523073675965916,0.002329069644366527,5 |
| AE,10,False,Cell-cycle (same phase),0.34945629433960473,0.009444692454962366,5 |
| AE,10,False,DEG dice@100 (pred),0.10514420813711259,0.012411300746072034,5 |
| AE,10,False,Mean gene-diff Spearman,0.17522118406993673,0.020530860366565134,5 |
| AE,10,False,Cytokine Spearman,0.9206396725434616,0.0029837052371605704,5 |
| AE,32,False,$R^2$,0.971761595220942,0.0030680884169240674,5 |
| AE,32,False,Energy distance,0.5123915601749832,0.0562354055692634,5 |
| AE,32,False,MMD-RBF,0.03421478176236125,0.00356279960868427,5 |
| AE,32,False,KNN purity (k=10),0.5148964411851225,0.0052719184045514605,5 |
| AE,32,False,KNN purity (normalized),0.45568667575747607,0.021046789164889012,5 |
| AE,32,False,Pathway Spearman,0.9346187030523547,0.012959966406286381,5 |
| AE,32,False,Coexpression Spearman,0.874888594857157,0.0032265002732213403,5 |
| AE,32,False,Cell-cycle (same phase),0.34780817525658375,0.008703341357819467,5 |
| AE,32,False,DEG dice@100 (pred),0.10665088150910118,0.013974818445031706,5 |
| AE,32,False,Mean gene-diff Spearman,0.17138717449105392,0.02279960093714312,5 |
| AE,32,False,Cytokine Spearman,0.9160055686084488,0.00368200632974078,5 |
| AE,128,False,$R^2$,0.9568641362876752,0.005447894499946259,5 |
| AE,128,False,Energy distance,0.613842805108548,0.06569067211004313,5 |
| AE,128,False,MMD-RBF,0.03762318591831343,0.003808494587737207,5 |
| AE,128,False,KNN purity (k=10),0.4893360023945993,0.009923256120512487,5 |
| AE,128,False,KNN purity (normalized),0.38279990998591534,0.023810939395510176,5 |
| AE,128,False,Pathway Spearman,0.9193833796501505,0.011705611794919612,5 |
| AE,128,False,Coexpression Spearman,0.8989766925720263,0.003530090875239939,5 |
| AE,128,False,Cell-cycle (same phase),0.3458609427775662,0.009268402430460123,5 |
| AE,128,False,DEG dice@100 (pred),0.07154514040417417,0.005381886132482915,5 |
| AE,128,False,Mean gene-diff Spearman,0.13876708567904156,0.016754540907335365,5 |
| AE,128,False,Cytokine Spearman,0.9082765390894612,0.00504825648781439,5 |
| AE,512,False,$R^2$,0.953989740699756,0.004685881294631726,5 |
| AE,512,False,Energy distance,0.6597103784743746,0.09321596778585219,5 |
| AE,512,False,MMD-RBF,0.0361956664971172,0.005047373914179391,5 |
| AE,512,False,KNN purity (k=10),0.46439483763932976,0.009656469015510002,5 |
| AE,512,False,KNN purity (normalized),0.34249733347420436,0.018977763664481808,5 |
| AE,512,False,Pathway Spearman,0.9211062012205214,0.01454720902051447,5 |
| AE,512,False,Coexpression Spearman,0.9261393670633324,0.00285235554826209,5 |
| AE,512,False,Cell-cycle (same phase),0.3412977562041367,0.0046172637624867395,5 |
| AE,512,False,DEG dice@100 (pred),0.07781877293485451,0.00694632872423073,5 |
| AE,512,False,Mean gene-diff Spearman,0.09353831314694665,0.010655007878185255,5 |
| AE,512,False,Cytokine Spearman,0.8924886975857952,0.001971559793139355,5 |
| AE,2048,False,$R^2$,0.9583079895107236,0.00398323988065971,5 |
| AE,2048,False,Energy distance,0.5768464533164234,0.07952279210708496,5 |
| AE,2048,False,MMD-RBF,0.03200959974516797,0.004055213979355711,5 |
| AE,2048,False,KNN purity (k=10),0.46833214138138307,0.010876241009762283,5 |
| AE,2048,False,KNN purity (normalized),0.3368666111414222,0.016713733831812766,5 |
| AE,2048,False,Pathway Spearman,0.9295639417029481,0.014976282550668608,5 |
| AE,2048,False,Coexpression Spearman,0.9586796349363969,0.002052211106056248,5 |
| AE,2048,False,Cell-cycle (same phase),0.3322752185891883,0.0027727497917465014,5 |
| AE,2048,False,DEG dice@100 (pred),0.027536175198784867,0.001980537476029616,5 |
| AE,2048,False,Mean gene-diff Spearman,0.08105431125600025,0.008033042706059937,5 |
| AE,2048,False,Cytokine Spearman,0.908758296876748,0.0040014770043362066,5 |
| nlscVI,10,False,$R^2$,0.9625698427636051,0.004331491045242075,5 |
| nlscVI,10,False,Energy distance,1.154243373179402,0.07043726438967889,5 |
| nlscVI,10,False,MMD-RBF,0.09090086277806812,0.004323130640348777,5 |
| nlscVI,10,False,KNN purity (k=10),0.4813454168395836,0.016013840470063923,5 |
| nlscVI,10,False,KNN purity (normalized),0.3648469081279579,0.036702688048874575,5 |
| nlscVI,10,False,Pathway Spearman,0.9156786827900811,0.021755106549565792,5 |
| nlscVI,10,False,Coexpression Spearman,0.8352997684722409,0.0033766449803087164,5 |
| nlscVI,10,False,Cell-cycle (same phase),0.3488846263904834,0.008228149753038755,5 |
| nlscVI,10,False,DEG dice@100 (pred),0.07296211037611454,0.0045238171666257074,5 |
| nlscVI,10,False,Mean gene-diff Spearman,0.12727501209705566,0.019158335232138585,5 |
| nlscVI,10,False,Cytokine Spearman,0.9092654895467739,0.006722112602293402,5 |
| nlscVI,32,False,$R^2$,0.9679567464854089,0.0037445983944510886,5 |
| nlscVI,32,False,Energy distance,0.9576170818527203,0.06491347968386992,5 |
| nlscVI,32,False,MMD-RBF,0.07903205664207566,0.004345231848675116,5 |
| nlscVI,32,False,KNN purity (k=10),0.5093218390875835,0.012955881611968272,5 |
| nlscVI,32,False,KNN purity (normalized),0.4475952231518985,0.03720116372362198,5 |
| nlscVI,32,False,Pathway Spearman,0.9241079790517462,0.01528574553166896,5 |
| nlscVI,32,False,Coexpression Spearman,0.8437299332515416,0.003040846721565275,5 |
| nlscVI,32,False,Cell-cycle (same phase),0.3485382667511042,0.01051930136413379,5 |
| nlscVI,32,False,DEG dice@100 (pred),0.10716644685913723,0.010588686175808285,5 |
| nlscVI,32,False,Mean gene-diff Spearman,0.1632852611020698,0.015580713568979934,5 |
| nlscVI,32,False,Cytokine Spearman,0.915759454134947,0.0053227451082298385,5 |
| nlscVI,128,False,$R^2$,0.9686114952849973,0.004428781207222738,5 |
| nlscVI,128,False,Energy distance,0.8532139281972615,0.07819383380109995,5 |
| nlscVI,128,False,MMD-RBF,0.06848732867664017,0.004903775901031152,5 |
| nlscVI,128,False,KNN purity (k=10),0.48992708943807173,0.014335472084536312,5 |
| nlscVI,128,False,KNN purity (normalized),0.3955331879385069,0.04006595593551334,5 |
| nlscVI,128,False,Pathway Spearman,0.9256121647673664,0.012781669129638823,5 |
| nlscVI,128,False,Coexpression Spearman,0.8582048657193134,0.004061623052085245,5 |
| nlscVI,128,False,Cell-cycle (same phase),0.3543634011494954,0.007048623703615469,5 |
| nlscVI,128,False,DEG dice@100 (pred),0.09108440048211301,0.007661379637677358,5 |
| nlscVI,128,False,Mean gene-diff Spearman,0.14508373312078862,0.013103089619684361,5 |
| nlscVI,128,False,Cytokine Spearman,0.9140372900819396,0.00697216250910607,5 |
| nlscVI,512,False,$R^2$,0.9625501246402521,0.005591271485035124,5 |
| nlscVI,512,False,Energy distance,0.8755429809222453,0.12159553081714003,5 |
| nlscVI,512,False,MMD-RBF,0.06119182507470681,0.006010519550871347,5 |
| nlscVI,512,False,KNN purity (k=10),0.45565358710983894,0.018567350098655115,5 |
| nlscVI,512,False,KNN purity (normalized),0.33713534423531477,0.039302779147434665,5 |
| nlscVI,512,False,Pathway Spearman,0.923209298377245,0.013924474361551,5 |
| nlscVI,512,False,Coexpression Spearman,0.8817530092823173,0.001616644278616887,5 |
| nlscVI,512,False,Cell-cycle (same phase),0.34936662090286497,0.009829374787492275,5 |
| nlscVI,512,False,DEG dice@100 (pred),0.05345732400043498,0.009274635100778679,5 |
| nlscVI,512,False,Mean gene-diff Spearman,0.10975385331957088,0.010692751850964823,5 |
| nlscVI,512,False,Cytokine Spearman,0.9053565948337023,0.0016148214167442175,5 |
| nlscVI,2048,False,$R^2$,0.9591218373122453,0.005678789490324419,5 |
| nlscVI,2048,False,Energy distance,0.799273484344275,0.11180507246125762,5 |
| nlscVI,2048,False,MMD-RBF,0.04897837403896546,0.0054979573588690165,5 |
| nlscVI,2048,False,KNN purity (k=10),0.4434482882340756,0.01585435789866809,5 |
| nlscVI,2048,False,KNN purity (normalized),0.2883888269592849,0.029038987331820098,5 |
| nlscVI,2048,False,Pathway Spearman,0.9219001074871352,0.014489367170216167,5 |
| nlscVI,2048,False,Coexpression Spearman,0.9301401690416183,0.0018551058486195706,5 |
| nlscVI,2048,False,Cell-cycle (same phase),0.32128936551715154,0.004240348907081148,5 |
| nlscVI,2048,False,DEG dice@100 (pred),0.02047090102566037,0.003884579775576506,5 |
| nlscVI,2048,False,Mean gene-diff Spearman,0.07459650625773617,0.0069539153639446745,5 |
| nlscVI,2048,False,Cytokine Spearman,0.9000992051485277,0.004884868914333127,5 |
| PCA,10,False,$R^2$,0.8800246107420566,0.009828706371755485,5 |
| PCA,10,False,Energy distance,4.432168145395876,0.21693657181625325,5 |
| PCA,10,False,MMD-RBF,0.3142297420897444,0.015248724064186656,5 |
| PCA,10,False,KNN purity (k=10),0.5272416877086383,0.008859585717909067,5 |
| PCA,10,False,KNN purity (normalized),0.48381504799304303,0.07673274391128825,5 |
| PCA,10,False,Pathway Spearman,0.85637817270926,0.029971495089471018,5 |
| PCA,10,False,Coexpression Spearman,0.7728946667569765,0.0044860494876822,5 |
| PCA,10,False,Cell-cycle (same phase),0.34309005016546323,0.00371671283908259,5 |
| PCA,10,False,DEG dice@100 (pred),0.06566606371581296,0.008834068610393727,5 |
| PCA,10,False,Mean gene-diff Spearman,0.1671992870667909,0.021103232316947846,5 |
| PCA,10,False,Cytokine Spearman,0.8792080822771592,0.005135109447107829,5 |
| PCA,32,False,$R^2$,0.9433953383975167,0.008099800899364804,5 |
| PCA,32,False,Energy distance,0.8790772788359519,0.09238302296860992,5 |
| PCA,32,False,MMD-RBF,0.06314242420885356,0.006809554401198914,5 |
| PCA,32,False,KNN purity (k=10),0.5462563898776429,0.004002474276433075,5 |
| PCA,32,False,KNN purity (normalized),0.5597523777506893,0.015231153754674282,5 |
| PCA,32,False,Pathway Spearman,0.9103025869826539,0.019885915210488155,5 |
| PCA,32,False,Coexpression Spearman,0.8371281053427497,0.00391198040179418,5 |
| PCA,32,False,Cell-cycle (same phase),0.3509511064495417,0.00883020560356148,5 |
| PCA,32,False,DEG dice@100 (pred),0.08206987401152167,0.010718703232530062,5 |
| PCA,32,False,Mean gene-diff Spearman,0.18312531446985938,0.0224323693401589,5 |
| PCA,32,False,Cytokine Spearman,0.9067865629847691,0.005845063355202197,5 |
| PCA,128,False,$R^2$,0.9571627541195857,0.005288475615089326,5 |
| PCA,128,False,Energy distance,0.3970853961093016,0.032329421170638,5 |
| PCA,128,False,MMD-RBF,0.023339451536287196,0.002429292446643594,5 |
| PCA,128,False,KNN purity (k=10),0.5405314633253225,0.007006951095803573,5 |
| PCA,128,False,KNN purity (normalized),0.5401034327231459,0.028861931573612463,5 |
| PCA,128,False,Pathway Spearman,0.915560930842352,0.018416274199457437,5 |
| PCA,128,False,Coexpression Spearman,0.8750429749917874,0.0035012265223537606,5 |
| PCA,128,False,Cell-cycle (same phase),0.3443796702016599,0.007909015295998429,5 |
| PCA,128,False,DEG dice@100 (pred),0.08424862338203175,0.005836423761454676,5 |
| PCA,128,False,Mean gene-diff Spearman,0.17853713720538752,0.022939485227963564,5 |
| PCA,128,False,Cytokine Spearman,0.9118217542976857,0.005059596989435638,5 |
| PCA,512,False,$R^2$,0.9632576870502684,0.003330314558739601,5 |
| PCA,512,False,Energy distance,0.4423089426534312,0.03109960099732188,5 |
| PCA,512,False,MMD-RBF,0.024768064532056967,0.0018065701336524866,5 |
| PCA,512,False,KNN purity (k=10),0.5315045910043257,0.006786255881671778,5 |
| PCA,512,False,KNN purity (normalized),0.49885299943694994,0.021531860660360523,5 |
| PCA,512,False,Pathway Spearman,0.9219999770605426,0.013299092913425773,5 |
| PCA,512,False,Coexpression Spearman,0.9160820794324099,0.0027660259288136116,5 |
| PCA,512,False,Cell-cycle (same phase),0.345276733728637,0.004067336627867585,5 |
| PCA,512,False,DEG dice@100 (pred),0.09905608964046739,0.002765349475226591,5 |
| PCA,512,False,Mean gene-diff Spearman,0.16392657634650107,0.018921165179679008,5 |
| PCA,512,False,Cytokine Spearman,0.9123206236563985,0.005094656550986473,5 |
| PCA,2048,False,$R^2$,0.9661989053522433,0.002702837272835978,5 |
| PCA,2048,False,Energy distance,0.44361289415632027,0.030646900018505216,5 |
| PCA,2048,False,MMD-RBF,0.025503442061977216,0.0016768708827111607,5 |
| PCA,2048,False,KNN purity (k=10),0.526584741452961,0.00744997646237945,5 |
| PCA,2048,False,KNN purity (normalized),0.4870027420465938,0.022118695186416078,5 |
| PCA,2048,False,Pathway Spearman,0.927409441852326,0.010534304239711429,5 |
| PCA,2048,False,Coexpression Spearman,0.9560340222708581,0.0017059581117503306,5 |
| PCA,2048,False,Cell-cycle (same phase),0.33195202420189784,0.004193268345866199,5 |
| PCA,2048,False,DEG dice@100 (pred),0.032834658167555986,0.0041342028521933645,5 |
| PCA,2048,False,Mean gene-diff Spearman,0.14180034516001555,0.01598819122448962,5 |
| PCA,2048,False,Cytokine Spearman,0.9131870467944374,0.001999200592760692,5 |
| SE,2058,True,$R^2$,0.9659048255216781,0.00445700900451397,5 |
| SE,2058,True,Energy distance,0.642914277534264,0.08386909618741986,5 |
| SE,2058,True,MMD-RBF,0.03649292436729995,0.004466023289902571,5 |
| SE,2058,True,KNN purity (k=10),0.46667209951490934,0.011816674015964597,5 |
| SE,2058,True,KNN purity (normalized),0.3596410472246082,0.019837935660587377,5 |
| SE,2058,True,Pathway Spearman,0.9263345566660753,0.01071843142633686,5 |
| SE,2058,True,Coexpression Spearman,0.9525057526339558,0.0018264748654730724,5 |
| SE,2058,True,Cell-cycle (same phase),0.34080444097227897,0.004375334318368141,5 |
| SE,2058,True,DEG dice@100 (pred),0.06828166918793958,0.008412148759989602,5 |
| SE,2058,True,Mean gene-diff Spearman,0.12576702193637154,0.011782637302616954,5 |
| SE,2058,True,Cytokine Spearman,0.9103034749168838,0.0027705425739173776,5 |
| scGPT,512,True,$R^2$,0.95625479187011,0.0045608142028140865,5 |
| scGPT,512,True,Energy distance,1.1075943232810483,0.07874055977441548,5 |
| scGPT,512,True,MMD-RBF,0.08293846253591448,0.003951854053376871,5 |
| scGPT,512,True,KNN purity (k=10),0.4747752947897418,0.011810193819222948,5 |
| scGPT,512,True,KNN purity (normalized),0.37132435643278755,0.01612020519789167,5 |
| scGPT,512,True,Pathway Spearman,0.9111739540672052,0.010796732805671444,5 |
| scGPT,512,True,Coexpression Spearman,0.8851875996564784,0.0014621377488812175,5 |
| scGPT,512,True,Cell-cycle (same phase),0.3452805423354546,0.005391843624462309,5 |
| scGPT,512,True,DEG dice@100 (pred),0.04516933468712883,0.0035971957780379913,5 |
| scGPT,512,True,Mean gene-diff Spearman,0.09896602552002547,0.00905211064556152,5 |
| scGPT,512,True,Cytokine Spearman,0.9016156016227352,0.003678555612116994,5 |
| scConcept,512,True,$R^2$,0.936689725172776,0.00799915179943034,5 |
| scConcept,512,True,Energy distance,1.0384678666482254,0.07382419556535914,5 |
| scConcept,512,True,MMD-RBF,0.07587644581026338,0.0029361352647598385,5 |
| scConcept,512,True,KNN purity (k=10),0.5164214919461037,0.007561850726485558,5 |
| scConcept,512,True,KNN purity (normalized),0.4438224084713667,0.011787418379601688,5 |
| scConcept,512,True,Pathway Spearman,0.9083172917561264,0.015081806247196131,5 |
| scConcept,512,True,Coexpression Spearman,0.8815943501975406,0.0025379978178733118,5 |
| scConcept,512,True,Cell-cycle (same phase),0.3431799092031264,0.00453449358882623,5 |
| scConcept,512,True,DEG dice@100 (pred),0.02716589466206045,0.0025020121436621938,5 |
| scConcept,512,True,Mean gene-diff Spearman,0.11281340141916536,0.00994357627759465,5 |
| scConcept,512,True,Cytokine Spearman,0.8978145252533715,0.007903631309205518,5 |
| scimilarity,128,True,$R^2$,0.9372336285171938,0.014400296005576862,5 |
| scimilarity,128,True,Energy distance,1.3759711352644524,0.22693764202304717,5 |
| scimilarity,128,True,MMD-RBF,0.09331528143957186,0.006107158886504382,5 |
| scimilarity,128,True,KNN purity (k=10),0.5017981132381415,0.005902358097142468,5 |
| scimilarity,128,True,KNN purity (normalized),0.42698439077519285,0.0065207406694758295,5 |
| scimilarity,128,True,Pathway Spearman,0.9182896067407456,0.011056323436370757,5 |
| scimilarity,128,True,Coexpression Spearman,0.8665199188588228,0.0021259461096872867,5 |
| scimilarity,128,True,Cell-cycle (same phase),0.3377604106770934,0.010600913557718864,5 |
| scimilarity,128,True,DEG dice@100 (pred),0.022940645146335654,0.00475061693656689,5 |
| scimilarity,128,True,Mean gene-diff Spearman,0.09215705071308217,0.008079960413267464,5 |
| scimilarity,128,True,Cytokine Spearman,0.9056005694209844,0.006973357337879123,5 |
|
|
