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Datasets:
theislab
/
ReconEval
like
1
Follow
Theis Lab
47
License:
mit
Dataset card
Data Studio
Files
Files and versions
xet
Community
main
ReconEval
39.6 GB
1 contributor
History:
3 commits
XiaotongF
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35a57c9
verified
15 days ago
figs
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15 days ago
tahoe_split01_metadata.zarr
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.gitattributes
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2.94 kB
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README.md
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21 Bytes
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27 days ago
cytokine_act_merged.csv
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6.53 MB
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15 days ago
luca_demo.h5ad
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2.33 MB
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15 days ago
luca_in_adata.h5ad
947 MB
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27 days ago
luca_recons_umap.pkl
pickle
Detected Pickle imports (15)
"pandas.core.frame.DataFrame"
,
"numpy._core.multiarray._reconstruct"
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"pandas.core.arrays.categorical.Categorical"
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"builtins.slice"
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"pandas._libs.internals._unpickle_block"
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"collections.OrderedDict"
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"numpy.dtype"
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"anndata._core.anndata.AnnData"
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"anndata._core.file_backing.AnnDataFileManager"
,
"pandas._libs.arrays.__pyx_unpickle_NDArrayBacked"
,
"numpy.ndarray"
,
"pandas.core.indexes.base.Index"
How to fix it?
2.14 GB
xet
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27 days ago
panelf_obs.pkl
pickle
Detected Pickle imports (12)
"pandas._libs.arrays.__pyx_unpickle_NDArrayBacked"
,
"pandas._libs.internals._unpickle_block"
,
"numpy.ndarray"
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"numpy.dtype"
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"numpy._core.multiarray._reconstruct"
,
"pandas.core.arrays.categorical.Categorical"
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"pandas.core.indexes.base.Index"
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"pandas.core.indexes.base._new_Index"
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"pandas.core.frame.DataFrame"
,
"builtins.slice"
,
"pandas.core.dtypes.dtypes.CategoricalDtype"
,
"pandas.core.internals.managers.BlockManager"
How to fix it?
819 kB
xet
clean up
27 days ago
panelf_umaps.pkl
pickle
Detected Pickle imports (17)
"anndata._core.anndata.AnnData"
,
"pandas._libs.internals._unpickle_block"
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"pandas.core.internals.managers.BlockManager"
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"scipy.sparse._csr.csr_matrix"
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"pandas.core.frame.DataFrame"
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"pandas.core.indexes.base._new_Index"
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"pandas.core.indexes.base.Index"
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"pandas._libs.arrays.__pyx_unpickle_NDArrayBacked"
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"numpy.dtype"
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"numpy.ndarray"
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"numpy._core.multiarray.scalar"
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"pandas.core.arrays.categorical.Categorical"
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"anndata._core.file_backing.AnnDataFileManager"
,
"builtins.slice"
How to fix it?
311 MB
xet
clean up
27 days ago
pbmc_plot.h5ad
Safe
3.56 MB
xet
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15 days ago
pbmc_plot_dict.pkl
Safe
pickle
Detected Pickle imports (3)
"numpy.ndarray"
,
"numpy._core.multiarray._reconstruct"
,
"numpy.dtype"
What is a pickle import?
262 kB
xet
Add files using upload-large-folder tool
15 days ago
pbmc_recons_umap.pkl
pickle
Detected Pickle imports (15)
"numpy.ndarray"
,
"numpy._core.multiarray._reconstruct"
,
"pandas.core.internals.managers.BlockManager"
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"pandas.core.dtypes.dtypes.CategoricalDtype"
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"pandas._libs.internals._unpickle_block"
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"anndata._core.file_backing.AnnDataFileManager"
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"builtins.slice"
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"collections.OrderedDict"
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"anndata._core.anndata.AnnData"
How to fix it?
2.53 GB
xet
clean up
27 days ago
regev_lab_cell_cycle_genes.txt
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556 Bytes
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st_umaps_ae2048.pkl
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st_umaps_pca128.pkl
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st_umaps_vae32.pkl
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27 days ago
tahoe_df_AXIN2.csv
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27 days ago
tahoe_df_EGR1.csv
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4.27 kB
clean up
27 days ago
tahoe_gene_names.pkl
Safe
pickle
Detected Pickle imports (3)
"numpy.ndarray"
,
"numpy._core.multiarray._reconstruct"
,
"numpy.dtype"
What is a pickle import?
365 kB
xet
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27 days ago
tahoe_in_adata.h5ad
Safe
442 MB
xet
clean up
27 days ago
tahoe_plot.h5ad
Safe
11.4 MB
xet
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15 days ago
tahoe_ptb_data.h5ad
Safe
40.3 MB
xet
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27 days ago
tahoe_recon_pairs.pkl
pickle
Detected Pickle imports (12)
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,
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"numpy._core.multiarray._reconstruct"
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"pandas.core.indexes.base._new_Index"
,
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,
"collections.OrderedDict"
How to fix it?
4.85 GB
xet
clean up
27 days ago
tahoe_recons_umap.pkl
pickle
Detected Pickle imports (15)
"numpy.ndarray"
,
"anndata._core.file_backing.AnnDataFileManager"
,
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,
"builtins.slice"
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,
"pandas.core.arrays.categorical.Categorical"
How to fix it?
1.75 GB
xet
clean up
27 days ago
tahoe_ref_data.h5ad
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1.17 GB
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clean up
27 days ago