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theislab
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ReconEval

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39.6 GB

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figs
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tahoe_split01_metadata.zarr
clean up 27 days ago
.gitattributes

2.94 kB
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README.md

21 Bytes
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cytokine_act_merged.csv

6.53 MB
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luca_demo.h5ad

2.33 MB
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luca_in_adata.h5ad

947 MB
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clean up 27 days ago
luca_recons_umap.pkl
Detected Pickle imports (15)
- "pandas.core.frame.DataFrame",
- "numpy._core.multiarray._reconstruct",
- "pandas.core.arrays.categorical.Categorical",
- "builtins.slice",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.indexes.base._new_Index",
- "collections.OrderedDict",
- "numpy.dtype",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "anndata._core.anndata.AnnData",
- "anndata._core.file_backing.AnnDataFileManager",
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "numpy.ndarray",
- "pandas.core.indexes.base.Index"
How to fix it?
2.14 GB
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clean up 27 days ago
panelf_obs.pkl
Detected Pickle imports (12)
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "pandas._libs.internals._unpickle_block",
- "numpy.ndarray",
- "numpy.dtype",
- "numpy._core.multiarray._reconstruct",
- "pandas.core.arrays.categorical.Categorical",
- "pandas.core.indexes.base.Index",
- "pandas.core.indexes.base._new_Index",
- "pandas.core.frame.DataFrame",
- "builtins.slice",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "pandas.core.internals.managers.BlockManager"
How to fix it?
819 kB
xet

clean up 27 days ago
panelf_umaps.pkl
Detected Pickle imports (17)
- "anndata._core.anndata.AnnData",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.internals.managers.BlockManager",
- "scipy.sparse._csr.csr_matrix",
- "pandas.core.frame.DataFrame",
- "pandas.core.indexes.base._new_Index",
- "pandas.core.indexes.base.Index",
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "collections.OrderedDict",
- "numpy.dtype",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct",
- "numpy._core.multiarray.scalar",
- "pandas.core.arrays.categorical.Categorical",
- "anndata._core.file_backing.AnnDataFileManager",
- "builtins.slice"
How to fix it?
311 MB
xet

clean up 27 days ago
pbmc_plot.h5ad

3.56 MB
xet

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pbmc_plot_dict.pkl
Detected Pickle imports (3)
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct",
- "numpy.dtype"
What is a pickle import?
262 kB
xet

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pbmc_recons_umap.pkl
Detected Pickle imports (15)
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.arrays.categorical.Categorical",
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "pandas.core.indexes.base._new_Index",
- "pandas.core.frame.DataFrame",
- "pandas.core.indexes.base.Index",
- "numpy.dtype",
- "anndata._core.file_backing.AnnDataFileManager",
- "builtins.slice",
- "collections.OrderedDict",
- "anndata._core.anndata.AnnData"
How to fix it?
2.53 GB
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clean up 27 days ago
regev_lab_cell_cycle_genes.txt

556 Bytes
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st_umaps_ae2048.pkl

10.3 GB
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st_umaps_pca128.pkl

7.62 GB
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st_umaps_vae32.pkl

7.49 GB
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tahoe_df_AXIN2.csv

4.34 kB
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tahoe_df_EGR1.csv

4.27 kB
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tahoe_gene_names.pkl
Detected Pickle imports (3)
- "numpy.ndarray",
- "numpy._core.multiarray._reconstruct",
- "numpy.dtype"
What is a pickle import?
365 kB
xet

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tahoe_in_adata.h5ad

442 MB
xet

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tahoe_plot.h5ad

11.4 MB
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tahoe_ptb_data.h5ad

40.3 MB
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tahoe_recon_pairs.pkl
Detected Pickle imports (12)
- "pandas.core.frame.DataFrame",
- "anndata._core.anndata.AnnData",
- "numpy._core.multiarray._reconstruct",
- "pandas.core.indexes.base.Index",
- "numpy.ndarray",
- "anndata._core.file_backing.AnnDataFileManager",
- "pandas.core.internals.managers.BlockManager",
- "numpy.dtype",
- "builtins.slice",
- "pandas.core.indexes.base._new_Index",
- "pandas._libs.internals._unpickle_block",
- "collections.OrderedDict"
How to fix it?
4.85 GB
xet

clean up 27 days ago
tahoe_recons_umap.pkl
Detected Pickle imports (15)
- "numpy.ndarray",
- "anndata._core.file_backing.AnnDataFileManager",
- "pandas.core.indexes.base.Index",
- "pandas._libs.internals._unpickle_block",
- "pandas.core.frame.DataFrame",
- "pandas.core.dtypes.dtypes.CategoricalDtype",
- "numpy.dtype",
- "numpy._core.multiarray._reconstruct",
- "collections.OrderedDict",
- "anndata._core.anndata.AnnData",
- "pandas.core.internals.managers.BlockManager",
- "pandas.core.indexes.base._new_Index",
- "builtins.slice",
- "pandas._libs.arrays.__pyx_unpickle_NDArrayBacked",
- "pandas.core.arrays.categorical.Categorical"
How to fix it?
1.75 GB
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clean up 27 days ago
tahoe_ref_data.h5ad

1.17 GB
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clean up 27 days ago