Datasets:

---

timodonnell

/

helico-data

like 0

Error code:   StreamingRowsError
Exception:    CastError
Message:      Couldn't cast
model_ligands: list<item: string>
  child 0, item: string
reference_ligands: list<item: string>
  child 0, item: string
lddt_pli: struct<assigned_scores: list<item: struct<score: double, coverage: double, lddt_pli_n_contacts: int6 (... 204 chars omitted)
  child 0, assigned_scores: list<item: struct<score: double, coverage: double, lddt_pli_n_contacts: int64, model_ligand: string, (... 91 chars omitted)
      child 0, item: struct<score: double, coverage: double, lddt_pli_n_contacts: int64, model_ligand: string, reference_ (... 79 chars omitted)
          child 0, score: double
          child 1, coverage: double
          child 2, lddt_pli_n_contacts: int64
          child 3, model_ligand: string
          child 4, reference_ligand: string
          child 5, bs_ref_res: list<item: string>
              child 0, item: string
          child 6, bs_mdl_res: list<item: string>
              child 0, item: string
  child 1, model_ligand_unassigned_reason: struct<>
  child 2, reference_ligand_unassigned_reason: struct<>
rmsd: struct<assigned_scores: list<item: struct<score: double, coverage: double, lddt_lp: double, bb_rmsd: (... 374 chars omitted)
  child 0, assigned_scores: list<item: struct<score: double, coverage: double, lddt_lp: double, bb_rmsd: double, model_ligand: s (... 261 chars omitted)
      child 0, item: struct<score: double, coverage: double, lddt_lp: double, bb_rmsd: double, model_ligand: string, refe (... 249 chars omitted)
          child 0, score: double
      
...
 list<item: null>
  child 0, item: null
irmsd: list<item: null>
  child 0, item: null
nnat: list<item: null>
  child 0, item: null
model: string
oligo_gdtha: double
model_bad_bonds: list<item: null>
  child 0, item: null
min_nuc_length: int64
reference_chains: list<item: string>
  child 0, item: string
residue_number_alignment: bool
reference_clashes: list<item: null>
  child 0, item: null
usalign_mapping: struct<A: string>
  child 0, A: string
dockq_interfaces: list<item: null>
  child 0, item: null
model_chains: list<item: string>
  child 0, item: string
dockq_ave_full: double
reference_biounit: null
dockq_reference_interfaces: list<item: null>
  child 0, item: null
chain_mapping: struct<A: string>
  child 0, A: string
reference_bad_angles: list<item: null>
  child 0, item: null
dockq_ave: double
reference_bad_bonds: list<item: null>
  child 0, item: null
lddt: double
fnat: list<item: null>
  child 0, item: null
reference: string
transform: list<item: list<item: double>>
  child 0, item: list<item: double>
      child 0, item: double
dockq: list<item: null>
  child 0, item: null
cad_exec: null
nmdl: list<item: null>
  child 0, item: null
fault_tolerant: bool
lrmsd: list<item: null>
  child 0, item: null
enforce_consistency: bool
model_bad_angles: list<item: null>
  child 0, item: null
lddt_add_mdl_contacts: bool
chem_mapping: list<item: list<item: string>>
  child 0, item: list<item: string>
      child 0, item: string
usalign_exec: null
model_biounit: null
tm_score: double
to
{'reference_chains': List(Value('string')), 'model_chains': List(Value('string')), 'chem_groups': List(List(Value('string'))), 'chem_mapping': List(List(Value('string'))), 'chain_mapping': {'A': Value('string')}, 'aln': List(Value('string')), 'inconsistent_residues': List(Value('null')), 'lddt': Value('float64'), 'model_clashes': List(Value('null')), 'model_bad_bonds': List(Value('null')), 'model_bad_angles': List(Value('null')), 'reference_clashes': List(Value('null')), 'reference_bad_bonds': List(Value('null')), 'reference_bad_angles': List(Value('null')), 'dockq_reference_interfaces': List(Value('null')), 'dockq_interfaces': List(Value('null')), 'dockq': List(Value('null')), 'fnat': List(Value('null')), 'fnonnat': List(Value('null')), 'irmsd': List(Value('null')), 'lrmsd': List(Value('null')), 'nnat': List(Value('null')), 'nmdl': List(Value('null')), 'dockq_ave': Value('float64'), 'dockq_wave': Value('float64'), 'dockq_ave_full': Value('float64'), 'dockq_wave_full': Value('float64'), 'oligo_gdtts': Value('float64'), 'oligo_gdtha': Value('float64'), 'rmsd': Value('float64'), 'transform': List(List(Value('float64'))), 'tm_score': Value('float64'), 'usalign_mapping': {'A': Value('string')}, 'model': Value('string'), 'reference': Value('string'), 'fault_tolerant': Value('bool'), 'model_biounit': Value('null'), 'reference_biounit': Value('null'), 'residue_number_alignment': Value('bool'), 'enforce_consistency': Value('bool'), 'cad_exec': Value('null'), 'usalign_exec': Value('null'), 'lddt_no_stereochecks': Value('bool'), 'min_pep_length': Value('int64'), 'min_nuc_length': Value('int64'), 'lddt_add_mdl_contacts': Value('bool'), 'dockq_capri_peptide': Value('bool'), 'status': Value('string')}
because column names don't match
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/utils.py", line 99, in get_rows_or_raise
                  return get_rows(
                         ^^^^^^^^^
                File "/src/libs/libcommon/src/libcommon/utils.py", line 272, in decorator
                  return func(*args, **kwargs)
                         ^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/utils.py", line 77, in get_rows
                  rows_plus_one = list(itertools.islice(ds, rows_max_number + 1))
                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2690, in __iter__
                  for key, example in ex_iterable:
                                      ^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2227, in __iter__
                  for key, pa_table in self._iter_arrow():
                                       ^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2251, in _iter_arrow
                  for key, pa_table in self.ex_iterable._iter_arrow():
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 494, in _iter_arrow
                  for key, pa_table in iterator:
                                       ^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 384, in _iter_arrow
                  for key, pa_table in self.generate_tables_fn(**gen_kwags):
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 299, in _generate_tables
                  self._cast_table(pa_table, json_field_paths=json_field_paths),
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 128, in _cast_table
                  pa_table = table_cast(pa_table, self.info.features.arrow_schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              model_ligands: list<item: string>
                child 0, item: string
              reference_ligands: list<item: string>
                child 0, item: string
              lddt_pli: struct<assigned_scores: list<item: struct<score: double, coverage: double, lddt_pli_n_contacts: int6 (... 204 chars omitted)
                child 0, assigned_scores: list<item: struct<score: double, coverage: double, lddt_pli_n_contacts: int64, model_ligand: string, (... 91 chars omitted)
                    child 0, item: struct<score: double, coverage: double, lddt_pli_n_contacts: int64, model_ligand: string, reference_ (... 79 chars omitted)
                        child 0, score: double
                        child 1, coverage: double
                        child 2, lddt_pli_n_contacts: int64
                        child 3, model_ligand: string
                        child 4, reference_ligand: string
                        child 5, bs_ref_res: list<item: string>
                            child 0, item: string
                        child 6, bs_mdl_res: list<item: string>
                            child 0, item: string
                child 1, model_ligand_unassigned_reason: struct<>
                child 2, reference_ligand_unassigned_reason: struct<>
              rmsd: struct<assigned_scores: list<item: struct<score: double, coverage: double, lddt_lp: double, bb_rmsd: (... 374 chars omitted)
                child 0, assigned_scores: list<item: struct<score: double, coverage: double, lddt_lp: double, bb_rmsd: double, model_ligand: s (... 261 chars omitted)
                    child 0, item: struct<score: double, coverage: double, lddt_lp: double, bb_rmsd: double, model_ligand: string, refe (... 249 chars omitted)
                        child 0, score: double
                    
              ...
               list<item: null>
                child 0, item: null
              irmsd: list<item: null>
                child 0, item: null
              nnat: list<item: null>
                child 0, item: null
              model: string
              oligo_gdtha: double
              model_bad_bonds: list<item: null>
                child 0, item: null
              min_nuc_length: int64
              reference_chains: list<item: string>
                child 0, item: string
              residue_number_alignment: bool
              reference_clashes: list<item: null>
                child 0, item: null
              usalign_mapping: struct<A: string>
                child 0, A: string
              dockq_interfaces: list<item: null>
                child 0, item: null
              model_chains: list<item: string>
                child 0, item: string
              dockq_ave_full: double
              reference_biounit: null
              dockq_reference_interfaces: list<item: null>
                child 0, item: null
              chain_mapping: struct<A: string>
                child 0, A: string
              reference_bad_angles: list<item: null>
                child 0, item: null
              dockq_ave: double
              reference_bad_bonds: list<item: null>
                child 0, item: null
              lddt: double
              fnat: list<item: null>
                child 0, item: null
              reference: string
              transform: list<item: list<item: double>>
                child 0, item: list<item: double>
                    child 0, item: double
              dockq: list<item: null>
                child 0, item: null
              cad_exec: null
              nmdl: list<item: null>
                child 0, item: null
              fault_tolerant: bool
              lrmsd: list<item: null>
                child 0, item: null
              enforce_consistency: bool
              model_bad_angles: list<item: null>
                child 0, item: null
              lddt_add_mdl_contacts: bool
              chem_mapping: list<item: list<item: string>>
                child 0, item: list<item: string>
                    child 0, item: string
              usalign_exec: null
              model_biounit: null
              tm_score: double
              to
              {'reference_chains': List(Value('string')), 'model_chains': List(Value('string')), 'chem_groups': List(List(Value('string'))), 'chem_mapping': List(List(Value('string'))), 'chain_mapping': {'A': Value('string')}, 'aln': List(Value('string')), 'inconsistent_residues': List(Value('null')), 'lddt': Value('float64'), 'model_clashes': List(Value('null')), 'model_bad_bonds': List(Value('null')), 'model_bad_angles': List(Value('null')), 'reference_clashes': List(Value('null')), 'reference_bad_bonds': List(Value('null')), 'reference_bad_angles': List(Value('null')), 'dockq_reference_interfaces': List(Value('null')), 'dockq_interfaces': List(Value('null')), 'dockq': List(Value('null')), 'fnat': List(Value('null')), 'fnonnat': List(Value('null')), 'irmsd': List(Value('null')), 'lrmsd': List(Value('null')), 'nnat': List(Value('null')), 'nmdl': List(Value('null')), 'dockq_ave': Value('float64'), 'dockq_wave': Value('float64'), 'dockq_ave_full': Value('float64'), 'dockq_wave_full': Value('float64'), 'oligo_gdtts': Value('float64'), 'oligo_gdtha': Value('float64'), 'rmsd': Value('float64'), 'transform': List(List(Value('float64'))), 'tm_score': Value('float64'), 'usalign_mapping': {'A': Value('string')}, 'model': Value('string'), 'reference': Value('string'), 'fault_tolerant': Value('bool'), 'model_biounit': Value('null'), 'reference_biounit': Value('null'), 'residue_number_alignment': Value('bool'), 'enforce_consistency': Value('bool'), 'cad_exec': Value('null'), 'usalign_exec': Value('null'), 'lddt_no_stereochecks': Value('bool'), 'min_pep_length': Value('int64'), 'min_nuc_length': Value('int64'), 'lddt_add_mdl_contacts': Value('bool'), 'dockq_capri_peptide': Value('bool'), 'status': Value('string')}
              because column names don't match