File size: 999 Bytes
4653e06 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 | Bootstrap: docker
From: ai4s-cn-beijing.cr.volces.com/pytorch-mirror/pytorch:2.3.1-cuda12.1-cudnn8-devel
%environment
# Define system variables to provide GPU access within the container.
export LD_LIBRARY_PATH=/usr/local/cuda/lib64:$LD_LIBRARY_PATH
# Define python path
export PYTHON=/opt/conda/bin/python
%files
# Copy algorithm-related files to a separate dir /algo.
# Don't change the dir name.
algorithms/Protenix /algo
algorithms/base /algo/base
%post
# Download algorithm source code
cd /algo
# from github
# git clone https://github.com/bytedance/Protenix.git
# cd ./Protenix
# pip install -e .
# from local source code
cd ./Protenix
# pip install -e .
pip install -e .
# from pip
# pip install protenix
%post
# Make sure make_predictions.sh file is executable.
chmod +x /algo/make_predictions.sh
# Run algorithm and convert outputs.
# Data is expected to be mounted into /algo/data dir.
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