helico-data / benchmarks /FoldBench /examples /alphafold3_inputs.json
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[
{
"dialect": "alphafold3",
"version": 2,
"name": "8tuz-assembly1",
"sequences": [
{
"protein": {
"id": "A",
"sequence": "EVQLVQSGEEVKKPGESLKISCKGSGYKFSSYWIGWVRQMPGKGLEWMGIIFPGDSDKRYSPSFQGQVTISADKSISTVYLQWSSLKASDTAMYYCARHITTHTYRGFFDFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK",
"modifications": [],
"unpairedMsa": null,
"pairedMsa": null,
"templates": null
}
},
{
"protein": {
"id": "B",
"sequence": "QLTQSPSSLSASVGDRVTITCRASQDISSALAWYQQKPGKAPKLLIYDVSSLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQFNGYPHRLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE",
"modifications": [],
"unpairedMsa": null,
"pairedMsa": null,
"templates": null
}
},
{
"protein": {
"id": "C",
"sequence": "SLDEKNSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNALK",
"modifications": [],
"unpairedMsa": null,
"pairedMsa": null,
"templates": null
}
},
{
"ligand": {
"id": [
"D",
"E",
"J",
"L",
"M",
"N"
],
"ccdCodes": [
"EDO"
]
}
},
{
"ligand": {
"id": [
"F",
"G",
"H",
"I",
"K",
"O",
"P"
],
"ccdCodes": [
"CL"
]
}
}
],
"modelSeeds": [
"42",
"66",
"101",
"2024",
"8888"
],
"userCCD": null
},
{
"dialect": "alphafold3",
"version": 2,
"name": "7fwf-assembly1",
"sequences": [
{
"protein": {
"id": "A",
"sequence": "GSHMCDAFVGTWKLVSSENFDDYMKELGVGFATRKMGGMAKPNCIISVNGDVITIKTESTLKNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVQVQKWDGKSTTIKRKREDDKLVVECVMKGVTCTRVYERA",
"modifications": [],
"unpairedMsa": null,
"pairedMsa": null,
"templates": null
}
},
{
"ligand": {
"id": [
"B",
"C",
"E"
],
"ccdCodes": [
"DMS"
]
}
},
{
"ligand": {
"id": "D",
"ccdCodes": [
"MQF"
]
}
}
],
"modelSeeds": [
"42",
"66",
"101",
"2024",
"8888"
],
"userCCD": null
},
{
"dialect": "alphafold3",
"version": 2,
"name": "5sbj-assembly1",
"sequences": [
{
"protein": {
"id": "A",
"sequence": "XYCSDCGADASQVRGGYCTNCGASADRIRX",
"modifications": [
{
"ptmType": "ACE",
"ptmPosition": 1
},
{
"ptmType": "AIB",
"ptmPosition": 10
},
{
"ptmType": "AIB",
"ptmPosition": 25
},
{
"ptmType": "NH2",
"ptmPosition": 30
}
],
"unpairedMsa": null,
"pairedMsa": null,
"templates": null
}
},
{
"ligand": {
"id": "B",
"ccdCodes": [
"CD"
]
}
}
],
"modelSeeds": [
"42",
"66",
"101",
"2024",
"8888"
],
"userCCD": null
},
{
"dialect": "alphafold3",
"version": 2,
"name": "8e3r-assembly1",
"sequences": [
{
"dna": {
"id": "A",
"sequence": "AATAAAAGGAAGTGGG",
"modifications": []
}
},
{
"dna": {
"id": "B",
"sequence": "TCCCACTTCCTTTTAT",
"modifications": []
}
},
{
"protein": {
"id": "C",
"sequence": "GSKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVKKKLTYQFSGEVLGRGGLAERRHPPH",
"modifications": [],
"unpairedMsa": null,
"pairedMsa": null,
"templates": null
}
}
],
"modelSeeds": [
"42",
"66",
"101",
"2024",
"8888"
],
"userCCD": null
}
]