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58,667
hungpham2511/NeuroKit
refs/heads/master
/tests/tests_eeg.py
import numpy as np import pandas as pd import neurokit2 as nk import mne # ============================================================================= # EEG # ============================================================================= def test_eeg_add_channel(): raw = mne.io.read_raw_fif(mne.datasets.sample.data_path() + '/MEG/sample/sample_audvis_raw.fif', preload=True) ecg = nk.ecg_simulate(length=170000) raw = nk.eeg_add_channel(raw, ecg, channel_type="ecg") df = raw.to_data_frame() assert len(df.columns) == 377
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,668
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/stats/__init__.py
"""Submodule for NeuroKit.""" from .standardize import standardize
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,669
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/ecg/__init__.py
"""Submodule for NeuroKit.""" from .ecg_simulate import ecg_simulate
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,670
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/stats/standardize.py
# -*- coding: utf-8 -*- import pandas as pd import numpy as np import scipy.stats def _standardize(data, robust=False): if robust is False: z = (data - np.mean(data, axis=0))/np.std(data, axis=0) else: z = (data - np.median(data, axis=0))/scipy.stats.median_absolute_deviation(data, axis=0, nan_policy="omit") return(z) def standardize(data, robust=False): """Standardization of data Performs a standardization of data (Z-scoring), i.e., centering and scaling, so that the data is expressed in terms of standard deviation (i.e., mean = 0, SD = 1) or Median Absolute Deviance (median = 0, MAD = 1). Parameters ---------- data : list, array or Series Raw data. robust : bool If True, centering is done by substracting the median from the variables and dividing it by the median absolute deviation (MAD). If False, variables are standardized by substracting the mean and dividing it by the standard deviation (SD). Returns ---------- list, array or Series The standardized values. Examples ---------- >>> import neurokit2 as nk >>> >>> nk.standardize([3, 1, 2, 4, 6]) """ # Return appropriate type if isinstance(data, list): data = list(_standardize(np.array(data), robust=robust)) elif isinstance(data, pd.Series) or isinstance(data, pd.DataFrame): z = _standardize(data.values, robust=robust) data[:] = z else: data = _standardize(data, robust=robust) return(data)
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,671
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/events/__init__.py
"""Submodule for NeuroKit.""" from .events_find import events_find from .plot_events_in_signal import plot_events_in_signal from .events_to_mne import events_to_mne
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,672
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/ecg/ecg_simulate.py
# -*- coding: utf-8 -*- import pandas as pd import numpy as np import scipy from ..signal import signal_resample def ecg_simulate(duration=10, length=None, sampling_rate=1000, noise=0.01, heart_rate=60): """Simulate an ECG/EKG signal Generate an artificial (synthetic) ECG signal of a given duration and sampling rate. It uses a 'Daubechies' wavelet that roughly approximates a single cardiac cycle. Parameters ---------- duration : int Desired recording length in seconds. sampling_rate, length : int The desired sampling rate (in Hz, i.e., samples/second) or the desired length of the signal (in samples). noise : float Noise level (gaussian noise). heart_rate : int Desired simulated heart rate (in beats per minute). Returns ---------- array Array containing the ECG signal. Examples ---------- >>> import neurokit as nk >>> import pandas as pd >>> >>> ecg = nk.ecg_simulate(duration=10, sampling_rate=100) >>> pd.Series(ecg).plot() See Also -------- signal_resample, ppg_simulate, emg_simulate References ----------- This function is based on `this script <https://github.com/diarmaidocualain/ecg_simulation>`_. """ # The "Daubechies" wavelet is a rough approximation to a real, single, cardiac cycle cardiac = scipy.signal.wavelets.daub(10) # Add the gap after the pqrst when the heart is resting. cardiac = np.concatenate([cardiac, np.zeros(10)]) # Caculate the number of beats in capture time period num_heart_beats = int(duration * heart_rate / 60) # Concatenate together the number of heart beats needed ecg = np.tile(cardiac , num_heart_beats) # Add random (gaussian distributed) noise ecg += np.random.normal(0, noise, len(ecg)) # Resample ecg = signal_resample(ecg, sampling_rate=int(len(ecg)/10), desired_length=length, desired_sampling_rate=sampling_rate) return(ecg)
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58,673
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/ppg/ppg_simulate.py
# -*- coding: utf-8 -*- import pandas as pd import numpy as np import scipy.stats from ..signal import signal_resample def ppg_simulate(duration=10, length=None, sampling_rate=1000, noise=0.01, heart_rate=60): """Simulate a PPG (photoplethysmography) signal Generate an artificial (synthetic) PPG signal of a given duration and sampling rate. Parameters ---------- duration : int Desired recording length in seconds. sampling_rate, length : int The desired sampling rate (in Hz, i.e., samples/second) or the desired length of the signal (in samples). noise : float Noise level (gaussian noise). heart_rate : int Desired simulated heart rate (in beats per minute). Returns ---------- array Array containing the PPG signal. Example ---------- >>> import neurokit as nk >>> import pandas as pd >>> >>> ppg = nk.ppg_simulate(duration=10, n_bursts=3) >>> pd.Series(ppg).plot() See Also -------- signal_resample, ecg_simulate, emg_simulate References ---------- - `Banerjee et al. (2015). Noise cleaning and Gaussian modeling of smart phone photoplethysmogram to improve blood pressure estimation. In 2015 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) (pp. 967-971). IEEE. <http://150.162.46.34:8080/icassp2015/pdfs/0000967.pdf>`_. """ index = np.linspace(-9, 9, num=100) normal1 = scipy.stats.norm.pdf(index, loc=-2, scale=2)/1.5 normal2 = scipy.stats.norm.pdf(index, loc=2, scale=1.5) ppg = normal1+normal2 pd.Series(ppg).plot() return(ppg)
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,674
hungpham2511/NeuroKit
refs/heads/master
/tests/tests_events.py
import numpy as np import pandas as pd import neurokit2 as nk # ============================================================================= # Events # ============================================================================= def test_events_find(): signal = np.cos(np.linspace(start=0, stop=20, num=1000)) events = nk.events_find(signal) assert list(events["Onset"]) == [0, 236, 550, 864] events = nk.events_find(signal, duration_min = 150) assert list(events["Onset"]) == [236, 550] events = nk.events_find(signal, inter_min = 300) assert list(events["Onset"]) == [0, 550, 864] def test_events_to_mne(): signal = np.cos(np.linspace(start=0, stop=20, num=1000)) events = nk.events_find(signal) events, event_id = nk.events_to_mne(events) assert event_id == {'Event': 0} def test_plot_events_in_signal(): signal = np.cos(np.linspace(start=0, stop=20, num=1000)) events = nk.events_find(signal) data = nk.plot_events_in_signal(signal, events, show=False) assert len(data['Event_Onset']) == 1000
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58,675
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/signal/signal_binarize.py
# -*- coding: utf-8 -*- import pandas as pd import numpy as np def _signal_binarize(signal, threshold="auto"): if threshold == "auto": threshold = np.mean([np.max(signal), np.min(signal)]) binary = signal.copy() binary[signal > threshold] = 1 binary[signal <= threshold] = 0 return(binary) def signal_binarize(signal, threshold="auto"): """Binarize a continuous signal. Parameters ---------- signal : list, array or Series The signal channel. threshold : float The threshold value by which to select the events. If "auto", takes the value between the max and the min. Returns ------- list A list or array depending on the type passed. Examples -------- >>> import numpy as np >>> import pandas as pd >>> import neurokit2 as nk >>> >>> signal = np.cos(np.linspace(start=0, stop=20, num=1000)) >>> binary = nk.signal_binarize(signal) >>> pd.DataFrame({"Raw": signal, "Binary": binary}).plot() """ # Return appropriate type if isinstance(signal, list): binary = _signal_binarize(np.array(signal), threshold=threshold) signal = list(binary) elif isinstance(signal, pd.Series): binary = _signal_binarize(signal.values, threshold=threshold) signal[:] = binary else: signal = _signal_binarize(signal, threshold=threshold) return(signal)
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58,676
hungpham2511/NeuroKit
refs/heads/master
/docs/img/README_examples.py
import numpy as np import pandas as pd import neurokit2 as nk # ============================================================================= # Example 1 # ============================================================================= # Generate synthetic signals ecg = nk.ecg_simulate(duration=10, heart_rate=70) emg = nk.emg_simulate(duration=10, n_bursts=3) # Visualise biosignals pd.DataFrame({"ECG": ecg, "EMG": emg}).plot(subplots=True, layout=(2, 1)) plot = pd.DataFrame({"ECG": ecg, "EMG": emg}).plot(subplots=True, layout=(2, 1)) plot[0][0].get_figure().savefig("README_simulation.png", dpi=300)
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,677
hungpham2511/NeuroKit
refs/heads/master
/tests/tests_ecg.py
import numpy as np import pandas as pd import neurokit2 as nk import scipy.stats # ============================================================================= # ECG # ============================================================================= def test_ecg_simulate(): ecg1 = nk.ecg_simulate(duration=20, length=5000) assert len(ecg1) == 5000 ecg2 = nk.ecg_simulate(duration=20, length=5000, bpm=500) # pd.DataFrame({"ECG1":ecg1, "ECG2": ecg2}).plot() # pd.DataFrame({"ECG1":ecg1, "ECG2": ecg2}).hist() assert scipy.stats.median_absolute_deviation(ecg1) < scipy.stats.median_absolute_deviation(ecg2)
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,678
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/events/events_to_mne.py
# -*- coding: utf-8 -*- import numpy as np def events_to_mne(events, conditions=None): """Create MNE compatible events. Parameters ---------- events : list, ndarray or dict Events onset location. If a dict is passed (e.g., from 'events_find()'), will select only the 'Onset' list. conditions : list A list of same length as events containing the stimuli types/conditions. Returns ---------- (events, event_id) : tuple MNE-formatted events, that can be added via 'raw.add_events(events), and a dictionary with event's names. See Also -------- events_find Examples ---------- >>> import numpy as np >>> import pandas as pd >>> import neurokit2 as nk >>> >>> signal = np.cos(np.linspace(start=0, stop=20, num=1000)) >>> events = nk.events_find(signal) >>> events, event_id = nk.events_to_mne(events) >>> event_id {'Event': 0} """ if isinstance(events, dict): events = events["Onset"] event_id = {} if conditions is None: conditions = ["Event"] * len(events) # Sanity check if len(conditions) != len(events): raise ValueError("NeuroKit error: events_to_mne(): 'conditions' argument of different length than event onsets.") event_names = list(set(conditions)) event_index = list(range(len(event_names))) for i in enumerate(event_names): conditions = [event_index[i[0]] if x==i[1] else x for x in conditions] event_id[i[1]] = event_index[i[0]] events = np.array([events, [0]*len(events), conditions]).T return(events, event_id)
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,679
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/emg/__init__.py
"""Submodule for NeuroKit.""" from .emg_simulate import emg_simulate
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,680
hungpham2511/NeuroKit
refs/heads/master
/tests/test_data.py
import numpy as np import pandas as pd import neurokit2 as nk # ============================================================================= # Data # ============================================================================= # def test_read_acqknowledge(): df, sampling_rate = nk.read_acqknowledge("../data/example1", sampling_rate=2000) assert sampling_rate == 2000
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,681
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/ppg/__init__.py
"""Submodule for NeuroKit.""" from .ppg_simulate import ppg_simulate
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,682
hungpham2511/NeuroKit
refs/heads/master
/tests/tests_signal.py
import numpy as np import pandas as pd import neurokit2 as nk # ============================================================================= # Signal # ============================================================================= def test_signal_binarize(): signal = np.cos(np.linspace(start=0, stop=20, num=1000)) binary = nk.signal_binarize(signal) assert len(binary) == 1000 binary = nk.signal_binarize(list(signal)) assert len(binary) == 1000 def test_signal_resample(): signal = np.cos(np.linspace(start=0, stop=20, num=50)) downsampled_interpolation = nk.signal_resample(signal, method="interpolation", sampling_rate=1000, desired_sampling_rate=500) downsampled_numpy = nk.signal_resample(signal, method="numpy", sampling_rate=1000, desired_sampling_rate=500) downsampled_pandas = nk.signal_resample(signal, method="pandas", sampling_rate=1000, desired_sampling_rate=500) downsampled_fft = nk.signal_resample(signal, method="FFT", sampling_rate=1000, desired_sampling_rate=500) downsampled_poly = nk.signal_resample(signal, method="poly", sampling_rate=1000, desired_sampling_rate=500) # Upsample upsampled_interpolation = nk.signal_resample(downsampled_interpolation, method="interpolation", sampling_rate=500, desired_sampling_rate=1000) upsampled_numpy = nk.signal_resample(downsampled_numpy, method="numpy", sampling_rate=500, desired_sampling_rate=1000) upsampled_pandas = nk.signal_resample(downsampled_pandas, method="pandas", sampling_rate=500, desired_sampling_rate=1000) upsampled_fft = nk.signal_resample(downsampled_fft, method="FFT", sampling_rate=500, desired_sampling_rate=1000) upsampled_poly = nk.signal_resample(downsampled_poly, method="poly", sampling_rate=500, desired_sampling_rate=1000) # Check rez = pd.DataFrame({"Interpolation": upsampled_interpolation - signal, "Numpy": upsampled_numpy - signal, "Pandas": upsampled_pandas - signal, "FFT": upsampled_fft - signal, "Poly": upsampled_poly - signal}) assert np.allclose(np.mean(rez.mean()), 0.0001, atol=0.0001)
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,683
hungpham2511/NeuroKit
refs/heads/master
/tests/tests_emg.py
import numpy as np import pandas as pd import neurokit2 as nk import scipy.stats # ============================================================================= # EMG # ============================================================================= def test_emg_simulate(): emg1 = nk.emg_simulate(duration=20, length=5000, n_bursts=1) assert len(emg1) == 5000 emg2 = nk.emg_simulate(duration=20, length=5000, n_bursts=15) assert scipy.stats.median_absolute_deviation(emg1) < scipy.stats.median_absolute_deviation(emg2)
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,684
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/__init__.py
"""Top-level package for NeuroKit.""" __author__ = """NeuroKit development team""" __email__ = 'dom.makowski@gmail.com' __version__ = '0.0.2' from .stats import * from .signal import * from .events import * from .data import * from .ecg import * from .emg import * from .ppg import * from .eeg import *
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,685
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/events/plot_events_in_signal.py
# -*- coding: utf-8 -*- import pandas as pd import numpy as np import matplotlib.pyplot as plt def plot_events_in_signal(signal, events, show=True, color="red", linestyle="--"): """ Plot events in signal. Parameters ---------- signal : array or DataFrame Signal array (can be a dataframe with many signals). events : list, ndarray or dict Events onset location. If a dict is passed (e.g., from 'events_find()'), will select only the 'Onset' list. show : bool If True, will return a plot. If False, will return a DataFrame that can be plotted externally. color, linestyle : str Other arguments to pass to matplotlib plotting. See Also -------- events_find Examples ---------- >>> import numpy as np >>> import pandas as pd >>> import neurokit2 as nk >>> >>> signal = np.cos(np.linspace(start=0, stop=20, num=1000)) >>> events = nk.events_find(signal) >>> nk.plot_events_in_signal(signal, events) """ if isinstance(events, dict): events = events["Onset"] if isinstance(signal, pd.DataFrame) is False: df = pd.DataFrame({"Signal": signal}) # Plot if necessary if show: df.plot() for event in events: plt.axvline(event, color=color, linestyle=linestyle) else: df["Event_Onset"] = 0 df.iloc[events] = 1 return(df)
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,686
hungpham2511/NeuroKit
refs/heads/master
/neurokit2/signal/__init__.py
"""Submodule for NeuroKit.""" from .signal_binarize import signal_binarize from .signal_resample import signal_resample
{"/neurokit2/ecg/ecg_ecgsynth.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_eeg.py": ["/neurokit2/__init__.py"], "/neurokit2/stats/__init__.py": ["/neurokit2/stats/standardize.py"], "/neurokit2/ecg/__init__.py": ["/neurokit2/ecg/ecg_simulate.py"], "/neurokit2/events/__init__.py": ["/neurokit2/events/plot_events_in_signal.py", "/neurokit2/events/events_to_mne.py"], "/neurokit2/ecg/ecg_simulate.py": ["/neurokit2/signal/__init__.py"], "/neurokit2/ppg/ppg_simulate.py": ["/neurokit2/signal/__init__.py"], "/tests/tests_events.py": ["/neurokit2/__init__.py"], "/docs/img/README_examples.py": ["/neurokit2/__init__.py"], "/tests/tests_ecg.py": ["/neurokit2/__init__.py"], "/tests/test_data.py": ["/neurokit2/__init__.py"], "/neurokit2/ppg/__init__.py": ["/neurokit2/ppg/ppg_simulate.py"], "/tests/tests_signal.py": ["/neurokit2/__init__.py"], "/tests/tests_emg.py": ["/neurokit2/__init__.py"], "/neurokit2/__init__.py": ["/neurokit2/stats/__init__.py", "/neurokit2/signal/__init__.py", "/neurokit2/events/__init__.py", "/neurokit2/ecg/__init__.py", "/neurokit2/emg/__init__.py", "/neurokit2/ppg/__init__.py"], "/neurokit2/signal/__init__.py": ["/neurokit2/signal/signal_binarize.py"]}
58,694
E-Jacques/emojipedia
refs/heads/master
/main.py
from window import MainFrame from tkinter import Tk from sys import argv root = Tk() root.title("Emojipedia") root.geometry("300x450") MainFrame(root, work_dir=argv[1]) root.focus() root.mainloop()
{"/main.py": ["/window.py"], "/window.py": ["/emote.py"]}
58,695
E-Jacques/emojipedia
refs/heads/master
/window.py
from tkinter import * from tkinter.ttk import * from string import ascii_lowercase, ascii_uppercase from emote import Emote from os import chdir import json class MainFrame(Frame): def __init__(self, master: Tk, work_dir: str = "."): super().__init__(master) super().grid(row=0, column=0, sticky="we") chdir(work_dir) master.bind("<Key>", self.moveArrow) self.master = master self.query: str = "" self.input = Entry(master) self.emotes: list[Emote] = [] self.emoteLabels: list[Label] = [] self.emoteFrame = Frame(master) self.emoteFrameColNum = 6 self.selected: list[int, int] = [-1, -1] self.lastUsed: list[int] = [] self.setupFrame() self.loadEmotes("data.json") self.loadLastUsed("lastused.json") self.displayEmotes() def setupFrame(self): self.input.bind("<Key>", self.displayEmotes) self.input.grid(row=0, column=0, sticky="nwe", padx=2, pady=2) self.emoteFrame.grid(row=1, column=0, padx=2, pady=2, sticky="wes") def getEmoteById(self, id: int) -> Emote: for e in self.emotes: if e.id == id: return e return None def moveArrow(self, ev: Event): maxLen = len(self.getFilteredEmotes(self.query)) if self.query != "" else len(self.lastUsed) # On retire le bg idx = self.selected[1] * self.emoteFrameColNum + self.selected[0] if ev.keysym in ["Down", "Up", "Right", "Left"] and len(self.emoteLabels) > idx >= 0: emotes = [self.getEmoteById(id) for id in self.lastUsed] if self.query != "": emotes = self.getFilteredEmotes(self.query) l = self.emoteLabels[idx] self.emoteLabels[idx] = emotes[idx].getLabel(self.emoteFrame, fz=16) self.emoteLabels[idx].grid(row=self.selected[1] , column=self.selected[0] , padx=5, pady=5) l.destroy() if ev.keysym == "Down": self.selected[0] = max(0, self.selected[0]) if (self.selected[1] + 1) * self.emoteFrameColNum + self.selected[0] < maxLen: self.selected[1] += 1 elif ev.keysym == "Up": self.selected[0] = max(0, self.selected[0]) self.selected[1] = max(0, self.selected[1] - 1) elif ev.keysym == "Right": if self.selected[1] * self.emoteFrameColNum + self.selected[0] + 1 < maxLen: self.selected[0] += 1 self.selected[1] = max(0, self.selected[1]) if self.selected[0] // self.emoteFrameColNum > 0: self.selected[0] = 0 self.selected[1] += 1 elif ev.keysym == "Left": if self.selected[0] == 0 and self.selected[1] > 0: self.selected[0] = self.emoteFrameColNum - 1 self.selected[1] = max(0, self.selected[1] - 1) else: self.selected[0] = max(0, self.selected[0] - 1) self.selected[1] = max(0, self.selected[1]) elif ev.keysym == "Escape": super().destroy() self.saveLastUsed("lastused.json") self.master.withdraw() self.master.destroy() elif ev.keysym in ["Return", "KP_Enter"]: idx = self.selected[1] * self.emoteFrameColNum + self.selected[0] if self.query != "": self.writeEmote(self.getFilteredEmotes(self.query)[idx]) else: self.writeEmote(self.getEmoteById(self.lastUsed[idx])) elif str(self.master.focus_get()) != str(self.input): self.input.insert(len(self.input.get()), ev.char) self.input.focus() if ev.keysym in ["Down", "Up", "Right", "Left"]: self.emoteLabels[self.selected[1] * self.emoteFrameColNum + self.selected[0]].config(bg="lightblue") def writeEmote(self, emote: Emote): if (self.lastUsed.count(emote.id) > 0): self.lastUsed.remove(emote.id) self.lastUsed = [emote.id] + self.lastUsed self.master.clipboard_clear() self.master.clipboard_append(emote.emote) self.master.update() def loadEmotes(self, path: str): with open(path, "r") as f: rawData = f.read() data = json.loads(rawData) for d in data: self.emotes.append(Emote(emote=d["emote"], id=d["id"], keywords=d["keywords"])) def loadLastUsed(self, path:str): with open(path, "r") as f: rawData = f.read() data = json.loads(rawData) self.lastUsed = data def saveLastUsed(self, path: str): with open(path, "w") as f: f.write(json.dumps(self.lastUsed)) def getFilteredEmotes(self, q="") -> 'list[Emote]': l = [e for e in self.emotes if e.containsKey(q) or q == ""] return l def displayEmotes(self, entry: Event=None): value = self.query if entry and entry.keysym not in ["Down", "Up", "Right", "Left", "Escape", "Return", "KP_Enter"]: value=self.input.get() if entry.char in ascii_lowercase + ascii_uppercase: value += entry.char self.selected = [-1, -1] elif entry: super().focus() self.query = value for widget in self.emoteFrame.winfo_children(): widget.destroy() self.emoteLabels = [] emotes = [self.getEmoteById(id) for id in self.lastUsed] if value != "": emotes = self.getFilteredEmotes(value) for idx, emote in enumerate(emotes): if emote == None: continue emoteLabel = emote.getLabel(self.emoteFrame, fz=16) emoteLabel.grid(row=idx//self.emoteFrameColNum , column=idx%self.emoteFrameColNum , padx=5, pady=5) self.emoteLabels.append(emoteLabel)
{"/main.py": ["/window.py"], "/window.py": ["/emote.py"]}
58,696
E-Jacques/emojipedia
refs/heads/master
/dataget.py
import requests from json import dumps from typing import List def getData(pathLs: List[str]): emotes: List[dict] = [] idx = 0 for path in pathLs: print(path) data = requests.get(path).text # print(data) emoteList = data.split('<ul class="emoji-list">')[1].split("</ul>")[0] ls = emoteList.split("<li>") for e in ls: if e == "": continue try: idx += 1 o = { "id": idx, "emote": e.split('<span class="emoji">')[1].split("</span>")[0], "keywords": [e.split("</span> ")[1].split("</a>")[0]] } emotes.append(o) except IndexError: print(e) print(emotes) json = dumps(emotes, ensure_ascii=False) with open("./data.json", "w") as f: f.write(json) if __name__ == "__main__": getData(["https://emojipedia.org/people/", "https://emojipedia.org/nature/", "https://emojipedia.org/food-drink/", "https://emojipedia.org/activity/", "https://emojipedia.org/travel-places/", "https://emojipedia.org/objects/", "https://emojipedia.org/symbols/", "https://emojipedia.org/flags/"])
{"/main.py": ["/window.py"], "/window.py": ["/emote.py"]}
58,697
E-Jacques/emojipedia
refs/heads/master
/emote.py
from tkinter import Frame, Label class Emote(): def __init__(self, emote: str, id: int, keywords=[]): self.emote: str = emote self.id = id self.keywords: list[str] = keywords def getLabel(self, master: Frame, fz=12) -> Label: label = Label(master, text=self.emote, font=("Arial", fz)) return label def addKeyword(self, k: str): self.keywords.append(k) def containsKey(self, k: str) -> bool: for key in self.keywords: if (k.lower() in key.lower()): return True return False
{"/main.py": ["/window.py"], "/window.py": ["/emote.py"]}
58,701
garyfeng/ggplot
refs/heads/master
/ggplot/geoms/geom_segment.py
# Gary Feng, 2016-04 # Implementing something close to the R/ggplot2 geom_segment() # https://github.com/cran/ggplot2/blob/master/R/geom-segment.r # based on geom_bar from __future__ import (absolute_import, division, print_function, unicode_literals) import itertools import numpy as np import pandas as pd import matplotlib.cbook as cbook from matplotlib.patches import * from matplotlib.lines import * from .geom import geom from ggplot.utils import is_string from ggplot.utils import is_categorical import warnings class geom_segment(geom): # from r: """ required_aes = c("x", "y", "xend", "yend"), non_missing_aes = c("linetype", "size", "shape"), default_aes = aes(colour = "black", size = 0.5, linetype = 1, alpha = NA), """ # DEFAULT_AES = {'alpha': None, 'color': None, 'fill': '#333333', # 'linetype': 'solid', 'size': 1.0, 'weight': None, 'y': None, 'width' : None} # REQUIRED_AES = {'x'} # DEFAULT_PARAMS = {'stat': 'bin', 'position': 'stack'} DEFAULT_AES = {'alpha': None, 'color': "black", 'fill': '#333333', 'barwidth':2, 'method':"bar", 'linetype': 'solid', 'size': 0.5, 'weight': None, 'y': None, 'width' : None} REQUIRED_AES = {'x', 'y', 'xend'} DEFAULT_PARAMS = {'stat': 'identity', 'position': 'identity'} _extra_requires = {'y', 'yend', 'width', 'barwidth', 'method'} _aes_renames = {'linetype': 'linestyle', 'size': 'linewidth', 'fill': 'color', 'color': 'edgecolor'} # NOTE: Currently, geom_bar does not support mapping # to alpha and linestyle. TODO: raise exception _units = {'edgecolor', 'color', 'alpha', 'linestyle', 'linewidth'} def __init__(self, *args, **kwargs): # TODO: Change self.__class__ to geom_segment super(geom_segment, self).__init__(*args, **kwargs) self.ax = None def _plot_unit(self, pinfo, ax): # not using weight pinfo.pop('weight') # getting the data x = np.asarray(pinfo.pop('x')) xend = np.asarray(pinfo.pop('xend')) # bar width with as a constant or as an aes parameter barwidth = np.ones(len(x))*2 if "barwidth" in pinfo: barwidth = np.ones(len(x)) * np.asarray(pinfo.pop('barwidth')) maxBarWidth = np.max(barwidth) categoricalY = is_categorical(pinfo['y']) # TODO: # if y is categorical: # make up y coordinates, adjust the barwidth etc # do not print y ticks or the y axis y = np.asarray(pinfo.pop('y')) #warnings.warn(str(len(y))) if categoricalY: y = pd.Series(y, dtype="category") y.cat.categories = range(y.cat.categories.shape[0]) y = np.asarray(y) * max(maxBarWidth,1 ) # y = np.asarray(range(len(x))) * (maxBarWidth +1) else: # plot horizontal bars around y; +/- half width y = y - barwidth/2 #warnings.warn(str(y)) if not "yend" in pinfo: yend = y + barwidth/2 else: yend = np.asarray(pinfo.pop('yend')) + barwidth/2 w = xend - x h = yend - y # width is the linewidth width_elem = pinfo.pop('width') # If width is unspecified, default is an array of 1's if width_elem is None: width = np.ones(len(x)) else : width = np.array(width_elem) self.ax = ax # ax.bar(left=x, height=barwidth, width=w, bottom=y, **pinfo) # consider using rect instead of bar # matplotlib.patches.Rectangle(xy, width, height, angle=0.0, **kwargs) # http://matplotlib.org/api/patches_api.html#matplotlib.patches.Rectangle # ax.add_patch(Rectangle((someX - .1, someY - .1), 0.2, 0.2, fill=True, alpha=1)) method = pinfo.pop('method').lower() if method == "rect": # patches.Rectangle() does not take vectors; need to iterate # use izip for efficient iteration; don't really need enumerate for ix, iy, ib, iw in itertools.izip(x,y,barwidth,w): ax.add_patch(Rectangle(xy = (ix,iy), \ height=ib, width=iw, fill=True, **pinfo)) elif method == "line": # note that linewidth is already set with the `size` aes() # and Line2D draws a continueous line for (x,y) # we need to break it apart # get rid of linewide in the aes(), because we will set here. pinfo.pop('linewidth') c = pinfo.pop('color') for ix, iy, ib, iw in itertools.izip(x,y,barwidth,w): # ax.add_line(Line2D((ix, ix+iw), (iy, iy), lw=ib, **pinfo)) ax.add_line(Line2D((ix, ix+iw), (iy, iy), lw=ib, color=c)) else: ax.bar(left=x, height=barwidth, width=w, bottom=y, **pinfo) ax.autoscale()
{"/ggplot/themes/__init__.py": ["/ggplot/themes/theme_noy.py"]}
58,702
garyfeng/ggplot
refs/heads/master
/ggplot/themes/__init__.py
from .theme import theme from .theme_538 import theme_538 from .theme_bw import theme_bw from .theme_gray import theme_gray from .theme_xkcd import theme_xkcd from .theme_matplotlib import theme_matplotlib from .theme_seaborn import theme_seaborn from .element_text import element_text # garyfeng from .theme_noy import theme_noy __all__ = ["theme", "theme_538", "theme_bw", "theme_gray", "theme_xkcd", "theme_matplotlib", "theme_seaborn", "element_text", "theme_noy"] __all__ = [str(u) for u in __all__]
{"/ggplot/themes/__init__.py": ["/ggplot/themes/theme_noy.py"]}
58,703
garyfeng/ggplot
refs/heads/master
/ggplot/themes/theme_noy.py
from .theme_gray import theme_gray class theme_noy(theme_gray): """ White background w/ black gridlines """ def __init__(self): super(theme_noy, self).__init__() self._rcParams['axes.facecolor'] = 'white' self._rcParams["axes.grid"] = "False" self._rcParams["ytick.color"] = "white"
{"/ggplot/themes/__init__.py": ["/ggplot/themes/theme_noy.py"]}
58,715
achan90/python-automation
refs/heads/master
/pt.py
#! /usr/bin/env python3 import pprint tableData = [['apples', 'oranges', 'cherries', 'banana'], ['Alice', 'Bob', 'Carol', 'David'], ['dogs', 'cats', 'moose', 'goose']] def printTable(table): width = [] for x in range(len(table)): for y in range(len(table[x])): width.append(len(table[x][y])) for x in range(len(table)): for y in range(len(table[x])): table[x][y] = str(table[x][y]).rjust(max(width)) for x in range(len(table[0])): printer(table, x) def printer(table, listLength): columns = [] for x in range(len(table)): columns.append((table[x][listLength])) print("".join(columns)) printTable(tableData)
{"/loot.py": ["/inventory.py"]}
58,716
achan90/python-automation
refs/heads/master
/comma_code.py
spam = ["apples", "bananas", "tofu", "cats", "mice"] def function(spam): spam.insert(len(spam) - 1, "and") sentence = ", ".join(spam) print("'{}'".format(sentence)) function(spam)
{"/loot.py": ["/inventory.py"]}
58,717
achan90/python-automation
refs/heads/master
/regexStrip.py
#! /usr/bin/env python3 import re def stripRegex(*arg): arguments = [] regexSpace = re.compile(r"^(\s+)|$(\s+)") for x in arg: arguments.append(x) if len(arguments) == 1: sentence = regexSpace.sub("", arguments[0]) print(sentence) elif len(arguments) == 2: regexSpace = re.compile(r"[{}]".format(arguments[1])) sentence = regexSpace.sub("", arguments[0]) print(sentence) else: exit("Too many arguments") a = " jEEEsus " b = "su" stripRegex(a, b) stripRegex(a)
{"/loot.py": ["/inventory.py"]}
58,718
achan90/python-automation
refs/heads/master
/madLibs.py
#! /usr/bin/env python3 import re import os def pathLocator(file): filePath = os.path.join(file) return filePath def madLibs(): regex = re.compile(r"(ADJECTIVE)|(VERB)|(NOUN)") file = open(pathLocator(input("Enter path name: ")), "r") fileInput = file.read() match = regex.search(fileInput) while match is not None: if match.group(1) is not None: fileInput = regex.sub( input("Enter adjective: "), fileInput, count=1) match = regex.search(fileInput) elif match.group(2) is not None: fileInput = regex.sub( input("Enter verb: "), fileInput, count=1) match = regex.search(fileInput) elif match.group(3) is not None: fileInput = regex.sub( input("Enter noun: "), fileInput, count=1) match = regex.search(fileInput) else: break print(fileInput) os.chdir(pathLocator(input("Enter directory name: "))) newFile = open("madLibbed.txt", "w") newFile.write(fileInput) file.close() newFile.close() madLibs()
{"/loot.py": ["/inventory.py"]}
58,719
achan90/python-automation
refs/heads/master
/loot.py
from inventory import * loot = ["gold coin", "dagger", "gold coin", "gold coin", "ruby"] def addToInventory(inventory, loot): for x in loot: if x in inventory: inventory[x] += 1 else: inventory.setdefault("{}".format(x), 1) displayInventory(inventory) addToInventory(inventory, loot)
{"/loot.py": ["/inventory.py"]}
58,720
achan90/python-automation
refs/heads/master
/pw.py
#! /usr/bin/env python3 import pyperclip import shelve # Still need to figure out how to encrypt the passwords. PASSWORDS = shelve.open("passwords") account = input("Enter account name: ") if account.lower() in PASSWORDS: pyperclip.copy(PASSWORDS[account]) print("Password for {} copied to clipboard".format(account)) else: while True: print("There is no account named {}".format(account)) add_account = input("Do you wish to add it? Y/N: ") if add_account.lower() == "y": PASSWORDS[account] = input( "Enter {} password: ".format(account)) print("Password for {} saved".format(account)) exit() elif add_account.lower() == "n": exit() else: continue PASSWORDS.close()
{"/loot.py": ["/inventory.py"]}
58,721
achan90/python-automation
refs/heads/master
/bp.py
#! /usr/bin/env python3 # Adds bullet points to beginning of each new line of text on clipboard import pyperclip text = pyperclip.paste() def separator(clipboard): lines = clipboard.split("\n") for line in range(len(lines)): lines[line] = "* {}".format(lines[line]) return "\n".join(lines) # Copies the finished bullet point list to clipboard pyperclip.copy(separator(text)) print("Bullet list created:") print(pyperclip.paste())
{"/loot.py": ["/inventory.py"]}
58,722
achan90/python-automation
refs/heads/master
/renameDates.py
#! /usr/bin/env python3 # renameDates.py - Renames filenames with American MM-DD-YYYY date format # to European DD-MM-YYY import shutil import os import re def renameDates(mode): # Regex to match files with american date format dateRegex = re.compile(r""" ^(.*?)- # all text before the date ( (0|1)? \d )- # one or two digits for the month ( (0|1|2|3)? \d ) # one or two digits for the day ( 20\d\d ) # four digits for the year (.*?)$ # all text after the date """, re.VERBOSE) # Loop over files in working directory for amerFilename in os.listdir("."): mo = dateRegex.search(amerFilename) # Kkip files without date if mo is None: continue # Get parts of the filename before = mo.group(1) month = mo.group(2) day = mo.group(4) year = mo.group(6) after = mo.group(7) # Form the european style filename euroFilename = ("{}{}-{}-{}{}".format(before, month, day, year, after)) # Get full absolute filepaths absWorkingDir = os.path.abspath(".") amerFilename = os.path.join(absWorkingDir, amerFilename) euroFilename = os.path.join(absWorkingDir, euroFilename) # Rename the files print("Renaming '{}' to '{}'".format(amerFilename, euroFilename)) confirmation = input("\nDo you want to continue? [Y/N]: ") if confirmation.lower() == "y": print("File renamed") shutil.move(amerFilename, euroFilename) elif confirmation.lower() == "n": print("File skipped".format(amerFilename)) continue
{"/loot.py": ["/inventory.py"]}
58,723
achan90/python-automation
refs/heads/master
/contactSearch.py
#! /usr/bin/env python3 import pyperclip import re text = pyperclip.paste() regexMail = re.compile(r""" ( [a-zA-Z.-_+%0-9]+ ) # username ( @ ) # @ symbol ( [a-zA-Z0-9.-]+ ) # domain ( \. \w{2,4} ) # domain extension """, re.VERBOSE) regexPhone = re.compile(r""" ( \d{3} | \( \d{3} \) ) ? # area code ( [-\s.] ) ? # separator ( \d{3} ) # first numbers ( [-\s.] ) # separator ( \d{4} ) # last numbers ( \s* (ext | x | ext.) \s* (\d{2,5}) ) ? # extension """, re.VERBOSE) def finder(text, emails, numbers): matches = [[], []] substitute = re.compile(r"\.+") for x in emails.findall(text): if emails.findall(text) is None: print("No emails found.") else: matches[0].append("".join(x)) for x in numbers.findall(text): if numbers.findall(text) is None: print("No phone numbers found.") else: matches[1].append("".join(x)) if matches is None: print("Search complete,no matches found.") else: formattedMatches = [] for x in matches[0]: formattedMatches.append(x) for x in range(len(matches[1])): matches[1][x] = substitute.sub("-", matches[1][x]) formattedMatches.append(matches[1][x]) print("\n".join(formattedMatches)) pyperclip.copy("\n".join(formattedMatches)) print("Search complete, matches copied to clipboard.") finder(text, regexMail, regexPhone)
{"/loot.py": ["/inventory.py"]}
58,724
achan90/python-automation
refs/heads/master
/mcb.py
#! /usr/bin/env python3 # mcb.py - Saves and loads pieces of text to the clipboard. # Usage: # ./mcb.py save <keyword> - Saves clipboard to keyword. # ./mcb.py <keyword> - Loads data from keyword to clipboard. # ./mcb.py list - Loads all keywords to clipboard. # ./mcb.py delete <keyword> - Deletes keyword data. # -/mcb.py reset - Deletes data from all keywords. # This script is not tested, might not work as intended. import shelve import pyperclip import sys mcbShelf = shelve.open("mcb") # Save clipboard content. if len(sys.argv) == 3 and sys.argv[1].lower() == "save": mcbShelf[sys.argv[2]] = pyperclip.paste() # Delete keyword data elif len(sys.argv) == 3 and sys.argv[1].lower == "delete": del mcbShelf[sys.argv[2]] # Delete all keyword data elif len(sys.argv) == 2 and sys.argv[1] == "reset": del mcbShelf # List keywords and load content. elif len(sys.argv) == 2: if sys.argv[1].lower() == "list": pyperclip.copy(str(list(mcbShelf.keys()))) elif sys.argv[1] in mcbShelf: pyperclip.copy(mcbShelf[sys.argv[1]]) mcbShelf.close()
{"/loot.py": ["/inventory.py"]}
58,725
achan90/python-automation
refs/heads/master
/inventory.py
inventory = {"arrow": 12, "gold coin": 42, "rope": 1, "torch": 6, "dagger": 1} def displayInventory(items): total = 0 print("Inventory:") for x, y in items.items(): if y == 1: print(y, x) total += y elif y > 1 and x == "torch": print(y, "torches") total += y else: print(y, "{}s".format(x)) total += y print("Total number of items: {}".format(total))
{"/loot.py": ["/inventory.py"]}
58,726
achan90/python-automation
refs/heads/master
/regexSearch/regexSearch.py
#! /usr/bin/env python3 # Searches through all text files on cwd for user supplied regex. import re import os def regexSearch(): regex = re.compile(input("Enter regex pattern: ")) fileList = os.listdir(os.getcwd()) for file in fileList: open(file, "r") matches = regex.findall(file.read()) print("Searching {}".format(file)) if matches is not None: for match in matches: print("Match found: {}".format("".join(match))) else: print("No matches found on {}".format(file)) regexSearch()
{"/loot.py": ["/inventory.py"]}
58,727
achan90/python-automation
refs/heads/master
/ipn.py
#! /usr/bin/env python3 import re def isPhoneNumber(message): regex = re.compile( r""" ( \d{3} [-\s)] | \( \d{3} \) ) ? # Area code ( [-\s] ) ? # Separator ( \d{3} ) # First three numbers ( [-\s] ) ? # Separator ( \d{4} ) # Last four numbers """, re.VERBOSE) match = regex.findall(message) for x in match: print("Found phone number: {}".format("".join(x))) message = "Call me at 415-555-1011 tomorrow. (415) 555 9999 is my office." isPhoneNumber(message)
{"/loot.py": ["/inventory.py"]}
58,732
ddrkt/forms-validation
refs/heads/master
/forms/urls.py
from django.contrib import admin from django.urls import path, include from forms import views from django.views.generic import TemplateView urlpatterns = [ path('values/', views.FormViewSet.as_view()), ]
{"/forms/views.py": ["/forms/serializers.py"]}
58,733
ddrkt/forms-validation
refs/heads/master
/forms/views.py
from django.shortcuts import render from forms.serializers import FormSerializers from rest_framework.views import APIView from rest_framework.response import Response from rest_framework.exceptions import ValidationError # Create your views here. class FormViewSet(APIView): def post(self, request, format=None): serializer = FormSerializers(data=request.data) if serializer.is_valid(): return Response(dict(result="input is valid")) raise ValidationError(serializer.errors, 400)
{"/forms/views.py": ["/forms/serializers.py"]}
58,734
ddrkt/forms-validation
refs/heads/master
/forms/serializers.py
from rest_framework import serializers from django.conf import settings import requests import re class FormSerializers(serializers.Serializer): email = serializers.EmailField() phone = serializers.CharField() fname = serializers.CharField(required=False) lname = serializers.CharField(required=False) cardn = serializers.CharField(min_length=16, max_length=16) def validate_phone(self, value): if re.match(r"^((8|\+7)[\- ]?)?(\(?\d{3}\)?[\- ]?)?[\d\- ]{7,10}$", value) == None: raise serializers.ValidationError("There must be valid phone number") return value def validate_cardn(self, value): if not value.isdecimal(): raise serializers.ValidationError("card number is not valid") api_key = getattr(settings, 'CARD_INFO_API_KEY', None) allowed_banks = getattr(settings, 'ALLOWED_BANKS', []) request = requests.get(f"https://api.cardinfo.online/?input={value[0:6]}&apiKey={api_key}") if request.json().get('bankName', False) not in allowed_banks: raise serializers.ValidationError("Bank is not in allowed banks") return value
{"/forms/views.py": ["/forms/serializers.py"]}
58,753
pombredanne/gevent-utils
refs/heads/master
/gevent_utils.py
""" gevent-utils ============ Debugging utilities for gevent. """ import math import signal import gevent arm_alarm = None if hasattr(signal, 'setitimer'): def alarm_itimer(seconds): signal.setitimer(signal.ITIMER_REAL, seconds) arm_alarm = alarm_itimer else: try: import itimer arm_alarm = itimer.alarm except ImportError: def alarm_signal(seconds): signal.alarm(math.ceil(seconds)) arm_alarm = alarm_signal class AlarmInterrupt(BaseException): pass class BlockingDetector(object): """ Utility class to detect thread blocking. Intended for debugging only. ``timeout`` is the number of seconds to wait before considering the thread blocked. Operates by setting and attempt to clear an alarm signal. The alarm signal cannot be cleared then the thread is considered blocked and ``BlockingDetector.alarm_handler`` is invoked with the signal and current frame. An ``AlarmInterrupt`` exception will be raised if the signal actually gets raised. Invoke via: gevent.spawn(BlockingDetector()) """ def __init__(self, timeout=1): self.timeout = timeout def __call__(self): """ Loop for 95% of our detection time and attempt to clear the signal. """ while True: self.set_signal() gevent.sleep(self.timeout * 0.95) self.clear_signal() # sleep the rest of the time gevent.sleep(self.timeout * 0.05) def alarm_handler(self, signum, frame): raise AlarmInterrupt('Blocking detected') def set_signal(self): tmp = signal.signal(signal.SIGALRM, self.alarm_handler) if tmp != self.alarm_handler: self._old_signal_handler = tmp arm_alarm(self.timeout) def clear_signal(self): if (hasattr(self, "_old_signal_handler") and self._old_signal_handler): signal.signal(signal.SIGALRM, self._old_signal_handler) signal.alarm(0)
{"/tests.py": ["/gevent_utils.py"]}
58,754
pombredanne/gevent-utils
refs/heads/master
/docs/conf.py
import sys, os try: import sphinxtogithub optional_extensions = ['sphinxtogithub'] except ImportError: optional_extensions = [] extensions = ['sphinx.ext.autodoc', 'sphinx.ext.autosummary'] + optional_extensions master_doc = 'index' project = u'gevent-utils' copyright = u'2011, Travis Cline' version = '0.0.2' release = '0.0.2' exclude_patterns = [] add_module_names = True pygments_style = 'sphinx' html_show_sourcelink = False html_show_sphinx = False htmlhelp_basename = 'gevent-utilsdoc' latex_documents = [ ('index', 'gevent-utils.tex', u'gevent-utils Documentation', u'Travis Cline', 'manual'), ] man_pages = [ ('index', 'gevent-utils', u'gevent-utils Documentation', [u'Travis Cline'], 1) ]
{"/tests.py": ["/gevent_utils.py"]}
58,755
pombredanne/gevent-utils
refs/heads/master
/tests.py
import time import mock import gevent from unittest import TestCase from gevent_utils import BlockingDetector, AlarmInterrupt class TestBlockingDetector(TestCase): @mock.patch.object(BlockingDetector, 'alarm_handler') def test_triggered_when_blocking(self, mock_alarm_handler): detector_greenlet = gevent.spawn(BlockingDetector(2)) gevent.sleep() self.assertFalse(mock_alarm_handler.called) time.sleep(1) self.assertFalse(mock_alarm_handler.called) time.sleep(1) # after two seconds of sleep the alarm_handler should have been called self.assertTrue(mock_alarm_handler.called) detector_greenlet.kill() def test_actual_exception_raised(self): detector_greenlet = gevent.spawn(BlockingDetector()) gevent.sleep() self.assertRaises(AlarmInterrupt, time.sleep, 1) detector_greenlet.kill() @mock.patch.object(BlockingDetector, 'alarm_handler') def test_not_triggered_when_cooperating(self, mock_alarm_handler): detector_greenlet = gevent.spawn(BlockingDetector()) gevent.sleep() self.assertFalse(mock_alarm_handler.called) gevent.sleep(2) self.assertFalse(mock_alarm_handler.called) detector_greenlet.kill()
{"/tests.py": ["/gevent_utils.py"]}
58,768
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/sign.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Sign(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "Sign", inputs=["x"], outputs=["y"], ) x = np.array(range(-5, 6)).astype(np.float32) y = np.sign(x) expect(node, inputs=[x], outputs=[y], name="test_sign")
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58,769
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/dft.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class DFT(Base): @staticmethod def export() -> None: node = onnx.helper.make_node("DFT", inputs=["x"], outputs=["y"], axis=1) x = np.arange(0, 100).reshape(10, 10).astype(np.float32) y = np.fft.fft(x, axis=0) x = x.reshape(1, 10, 10, 1) y = np.stack((y.real, y.imag), axis=2).astype(np.float32).reshape(1, 10, 10, 2) expect(node, inputs=[x], outputs=[y], name="test_dft") node = onnx.helper.make_node("DFT", inputs=["x"], outputs=["y"], axis=2) x = np.arange(0, 100).reshape(10, 10).astype(np.float32) y = np.fft.fft(x, axis=1) x = x.reshape(1, 10, 10, 1) y = np.stack((y.real, y.imag), axis=2).astype(np.float32).reshape(1, 10, 10, 2) expect(node, inputs=[x], outputs=[y], name="test_dft_axis") node = onnx.helper.make_node( "DFT", inputs=["x"], outputs=["y"], inverse=1, axis=1 ) x = np.arange(0, 100, dtype=np.complex64).reshape( 10, 10, ) y = np.fft.ifft(x, axis=0) x = np.stack((x.real, x.imag), axis=2).astype(np.float32).reshape(1, 10, 10, 2) y = np.stack((y.real, y.imag), axis=2).astype(np.float32).reshape(1, 10, 10, 2) expect(node, inputs=[x], outputs=[y], name="test_dft_inverse")
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58,770
onnx/onnx
refs/heads/main
/onnx/parser.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import onnx import onnx.onnx_cpp2py_export.parser as C # noqa: N812 class ParseError(Exception): pass def parse_model(model_text: str) -> onnx.ModelProto: """Parse a string to build a ModelProto. Arguments: model_text (string): formatted string Returns: ModelProto """ (success, msg, model_proto_str) = C.parse_model(model_text) if success: return onnx.load_from_string(model_proto_str) raise ParseError(msg) def parse_graph(graph_text: str) -> onnx.GraphProto: """Parse a string to build a GraphProto. Arguments: graph_text (string): formatted string Returns: GraphProto """ (success, msg, graph_proto_str) = C.parse_graph(graph_text) if success: graph_proto = onnx.GraphProto() graph_proto.ParseFromString(graph_proto_str) return graph_proto raise ParseError(msg) def parse_function(function_text: str) -> onnx.FunctionProto: """Parse a string to build a FunctionProto. Arguments: function_text (string): formatted string Returns: FunctionProto """ (success, msg, function_proto_str) = C.parse_function(function_text) if success: function_proto = onnx.FunctionProto() function_proto.ParseFromString(function_proto_str) return function_proto raise ParseError(msg) def parse_node(node_text: str) -> onnx.NodeProto: """Parse a string to build a NodeProto. Arguments: node_text: formatted string Returns: NodeProto """ (success, msg, node_proto_str) = C.parse_node(node_text) if success: node_proto = onnx.NodeProto() node_proto.ParseFromString(node_proto_str) return node_proto raise ParseError(msg)
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58,771
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/constantofshape.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class ConstantOfShape(Base): @staticmethod def export_float_ones() -> None: x = np.array([4, 3, 2]).astype(np.int64) tensor_value = onnx.helper.make_tensor( "value", onnx.TensorProto.FLOAT, [1], [1] ) node = onnx.helper.make_node( "ConstantOfShape", inputs=["x"], outputs=["y"], value=tensor_value, ) y = np.ones(x, dtype=np.float32) expect(node, inputs=[x], outputs=[y], name="test_constantofshape_float_ones") @staticmethod def export_int32_zeros() -> None: x = np.array([10, 6]).astype(np.int64) tensor_value = onnx.helper.make_tensor( "value", onnx.TensorProto.INT32, [1], [0] ) node = onnx.helper.make_node( "ConstantOfShape", inputs=["x"], outputs=["y"], value=tensor_value, ) y = np.zeros(x, dtype=np.int32) expect(node, inputs=[x], outputs=[y], name="test_constantofshape_int_zeros") @staticmethod def export_int32_shape_zero() -> None: x = np.array( [ 0, ] ).astype(np.int64) tensor_value = onnx.helper.make_tensor( "value", onnx.TensorProto.INT32, [1], [0] ) node = onnx.helper.make_node( "ConstantOfShape", inputs=["x"], outputs=["y"], value=tensor_value, ) y = np.zeros(x, dtype=np.int32) expect( node, inputs=[x], outputs=[y], name="test_constantofshape_int_shape_zero" )
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"/onnx/backend/test/case/node/reducel1.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/reference/ops_optimized/op_conv_optimized.py": ["/onnx/reference/op_run.py"], "/onnx/backend/test/case/node/floor.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/reference/ops/op_blackman_window.py": ["/onnx/reference/ops/_op_common_window.py"], "/onnx/backend/test/case/node/bitwisexor.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py", "/onnx/numpy_helper.py"], "/onnx/backend/test/case/node/round.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/reference/ops/op_random_normal_like.py": ["/onnx/helper.py", "/onnx/reference/ops/_op_common_random.py"], "/onnx/reference/ops/op_conv_integer.py": ["/onnx/reference/op_run.py", "/onnx/reference/ops/op_conv.py"], "/onnx/backend/test/case/node/cast.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py", "/onnx/helper.py", "/onnx/numpy_helper.py"], "/onnx/backend/test/case/node/hammingwindow.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/reference/ops/op_lp_pool.py": ["/onnx/reference/ops/op_pool_common.py"], "/onnx/backend/test/case/node/split.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/test/hub_test.py": ["/onnx/__init__.py"], "/onnx/backend/test/case/node/shrink.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/reference/ops/op_gru.py": ["/onnx/reference/op_run.py"]}
58,772
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/averagepool.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect from onnx.reference.ops.op_pool_common import ( get_output_shape_auto_pad, get_output_shape_explicit_padding, get_pad_shape, pool, ) class AveragePool(Base): @staticmethod def export_averagepool_2d_precomputed_pads() -> None: """ input_shape: [1, 1, 5, 5] output_shape: [1, 1, 5, 5] pad_shape: [4, 4] -> [2, 2, 2, 2] by axis """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[5, 5], pads=[2, 2, 2, 2], ) x = np.array( [ [ [ [1, 2, 3, 4, 5], [6, 7, 8, 9, 10], [11, 12, 13, 14, 15], [16, 17, 18, 19, 20], [21, 22, 23, 24, 25], ] ] ] ).astype(np.float32) y = np.array( [ [ [ [7, 7.5, 8, 8.5, 9], [9.5, 10, 10.5, 11, 11.5], [12, 12.5, 13, 13.5, 14], [14.5, 15, 15.5, 16, 16.5], [17, 17.5, 18, 18.5, 19], ] ] ] ).astype(np.float32) expect( node, inputs=[x], outputs=[y], name="test_averagepool_2d_precomputed_pads" ) @staticmethod def export_averagepool_2d_precomputed_pads_count_include_pad() -> None: """ input_shape: [1, 1, 5, 5] output_shape: [1, 1, 5, 5] pad_shape: [4, 4] -> [2, 2, 2, 2] by axis """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[5, 5], pads=[2, 2, 2, 2], count_include_pad=1, ) x = np.array( [ [ [ [1, 2, 3, 4, 5], [6, 7, 8, 9, 10], [11, 12, 13, 14, 15], [16, 17, 18, 19, 20], [21, 22, 23, 24, 25], ] ] ] ).astype(np.float32) y = np.array( [ [ [ [2.5200, 3.6000, 4.8000, 4.0800, 3.2400], [4.5600, 6.4000, 8.4000, 7.0400, 5.5200], [7.2000, 10.0000, 13.0000, 10.8000, 8.4000], [6.9600, 9.6000, 12.4000, 10.2400, 7.9200], [6.1200, 8.4000, 10.8000, 8.8800, 6.8400], ] ] ] ).astype(np.float32) expect( node, inputs=[x], outputs=[y], name="test_averagepool_2d_precomputed_pads_count_include_pad", ) @staticmethod def export_averagepool_2d_precomputed_strides() -> None: """ input_shape: [1, 1, 5, 5] output_shape: [1, 1, 2, 2] """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2], strides=[2, 2], ) x = np.array( [ [ [ [1, 2, 3, 4, 5], [6, 7, 8, 9, 10], [11, 12, 13, 14, 15], [16, 17, 18, 19, 20], [21, 22, 23, 24, 25], ] ] ] ).astype(np.float32) y = np.array([[[[4, 6], [14, 16]]]]).astype(np.float32) expect( node, inputs=[x], outputs=[y], name="test_averagepool_2d_precomputed_strides", ) @staticmethod def export_averagepool_2d_precomputed_same_upper() -> None: """ input_shape: [1, 1, 5, 5] output_shape: [1, 1, 3, 3] pad_shape: [2, 2] -> [1, 1, 1, 1] by axis """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[3, 3], strides=[2, 2], auto_pad="SAME_UPPER", ) x = np.array( [ [ [ [1, 2, 3, 4, 5], [6, 7, 8, 9, 10], [11, 12, 13, 14, 15], [16, 17, 18, 19, 20], [21, 22, 23, 24, 25], ] ] ] ).astype(np.float32) y = np.array([[[[4, 5.5, 7], [11.5, 13, 14.5], [19, 20.5, 22]]]]).astype( np.float32 ) expect( node, inputs=[x], outputs=[y], name="test_averagepool_2d_precomputed_same_upper", ) @staticmethod def export_averagepool_1d_default() -> None: """ input_shape: [1, 3, 32] output_shape: [1, 3, 31] """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[2], ) x = np.random.randn(1, 3, 32).astype(np.float32) x_shape = np.shape(x) pads = None kernel_shape = [2] strides = [1] out_shape, _ = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides ) padded = x y = pool(padded, x_shape, kernel_shape, strides, out_shape, "AVG") expect(node, inputs=[x], outputs=[y], name="test_averagepool_1d_default") @staticmethod def export_averagepool_2d_default() -> None: """ input_shape: [1, 3, 32, 32] output_shape: [1, 3, 31, 31] """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2], ) x = np.random.randn(1, 3, 32, 32).astype(np.float32) x_shape = np.shape(x) pads = None kernel_shape = (2, 2) strides = (1, 1) out_shape, _ = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides ) padded = x y = pool(padded, x_shape, kernel_shape, strides, out_shape, "AVG") expect(node, inputs=[x], outputs=[y], name="test_averagepool_2d_default") @staticmethod def export_averagepool_3d_default() -> None: """ input_shape: [1, 3, 32, 32, 32] output_shape: [1, 3, 31, 31, 31] """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2, 2], ) x = np.random.randn(1, 3, 32, 32, 32).astype(np.float32) x_shape = np.shape(x) pads = None kernel_shape = [2, 2, 2] strides = [1, 1, 1] out_shape, _ = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides ) padded = x y = pool(padded, x_shape, kernel_shape, strides, out_shape, "AVG") expect(node, inputs=[x], outputs=[y], name="test_averagepool_3d_default") @staticmethod def export_averagepool_2d_same_upper() -> None: """ input_shape: [1, 3, 32, 32] output_shape: [1, 3, 32, 32] pad_shape: [1, 1] -> [0, 1, 0, 1] by axis """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2], auto_pad="SAME_UPPER", ) x = np.random.randn(1, 3, 32, 32).astype(np.float32) x_shape = np.shape(x) kernel_shape = (2, 2) strides = (1, 1) out_shape = get_output_shape_auto_pad( "SAME_UPPER", x_shape[2:], kernel_shape, strides ) pad_shape = get_pad_shape( "SAME_UPPER", x_shape[2:], kernel_shape, strides, out_shape ) pad_top = pad_shape[0] // 2 pad_bottom = pad_shape[0] - pad_top pad_left = pad_shape[1] // 2 pad_right = pad_shape[1] - pad_left padded = np.pad( x, ((0, 0), (0, 0), (pad_top, pad_bottom), (pad_left, pad_right)), mode="constant", constant_values=np.nan, ) pads = (pad_top, pad_left, pad_bottom, pad_right) y = pool(padded, x_shape, kernel_shape, strides, out_shape, "AVG", pads) expect(node, inputs=[x], outputs=[y], name="test_averagepool_2d_same_upper") @staticmethod def export_averagepool_2d_same_lower() -> None: """ input_shape: [1, 3, 32, 32] output_shape: [1, 3, 32, 32] pad_shape: [1, 1] -> [1, 0, 1, 0] by axis """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2], auto_pad="SAME_LOWER", ) x = np.random.randn(1, 3, 32, 32).astype(np.float32) x_shape = np.shape(x) kernel_shape = (2, 2) strides = (1, 1) out_shape = get_output_shape_auto_pad( "SAME_LOWER", x_shape[2:], kernel_shape, strides ) pad_shape = get_pad_shape( "SAME_LOWER", x_shape[2:], kernel_shape, strides, out_shape ) pad_bottom = pad_shape[0] // 2 pad_top = pad_shape[0] - pad_bottom pad_right = pad_shape[1] // 2 pad_left = pad_shape[1] - pad_right padded = np.pad( x, ((0, 0), (0, 0), (pad_top, pad_bottom), (pad_left, pad_right)), mode="constant", constant_values=np.nan, ) pads = (pad_top, pad_left, pad_bottom, pad_right) y = pool(padded, x_shape, kernel_shape, strides, out_shape, "AVG", pads) expect(node, inputs=[x], outputs=[y], name="test_averagepool_2d_same_lower") @staticmethod def export_averagepool_2d_pads() -> None: """ input_shape: [1, 3, 28, 28] output_shape: [1, 3, 30, 30] pad_shape: [4, 4] -> [2, 2, 2, 2] by axis """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[3, 3], pads=[2, 2, 2, 2], ) x = np.random.randn(1, 3, 28, 28).astype(np.float32) x_shape = np.shape(x) kernel_shape = (3, 3) strides = (1, 1) pad_bottom = 2 pad_top = 2 pad_right = 2 pad_left = 2 pads = [pad_top, pad_left, pad_bottom, pad_right] out_shape, pads = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides, ceil_mode=False ) padded = np.pad( x, ((0, 0), (0, 0), (pads[0], pads[2]), (pads[1], pads[3])), mode="constant", constant_values=np.nan, ) y = pool(padded, x_shape, kernel_shape, strides, out_shape, "AVG", pads) expect(node, inputs=[x], outputs=[y], name="test_averagepool_2d_pads") @staticmethod def export_averagepool_2d_pads_count_include_pad() -> None: """ input_shape: [1, 3, 28, 28] output_shape: [1, 3, 30, 30] pad_shape: [4, 4] -> [2, 2, 2, 2] by axis """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[3, 3], pads=[2, 2, 2, 2], count_include_pad=1, ) x = np.random.randn(1, 3, 28, 28).astype(np.float32) x_shape = np.shape(x) dilations = (1, 1) kernel_shape = (3, 3) strides = (1, 1) pad_bottom = 2 pad_top = 2 pad_right = 2 pad_left = 2 pads = [pad_top, pad_left, pad_bottom, pad_right] out_shape, pads = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides, dilations, ceil_mode=False ) padded = np.pad( x, ((0, 0), (0, 0), (pads[0], pads[2]), (pads[1], pads[3])), mode="constant", constant_values=0, ) y = pool( padded, x_shape, kernel_shape, strides, out_shape, "AVG", pads, count_include_pad=1, ) expect( node, inputs=[x], outputs=[y], name="test_averagepool_2d_pads_count_include_pad", ) @staticmethod def export_averagepool_2d_strides() -> None: """ input_shape: [1, 3, 32, 32] output_shape: [1, 3, 10, 10] """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[5, 5], strides=[3, 3], ) x = np.random.randn(1, 3, 32, 32).astype(np.float32) x_shape = np.shape(x) kernel_shape = (5, 5) strides = (3, 3) out_shape, pads = get_output_shape_explicit_padding( None, x_shape[2:], kernel_shape, strides, ceil_mode=False ) padded = x y = pool(padded, x_shape, kernel_shape, strides, out_shape, "AVG", pads) expect(node, inputs=[x], outputs=[y], name="test_averagepool_2d_strides") @staticmethod def export_averagepool_2d_ceil() -> None: """ input_shape: [1, 1, 4, 4] output_shape: [1, 1, 2, 2] """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[3, 3], strides=[2, 2], ceil_mode=True, ) x = np.array( [ [ [ [1, 2, 3, 4], [5, 6, 7, 8], [9, 10, 11, 12], [13, 14, 15, 16], ] ] ] ).astype(np.float32) y = np.array([[[[6, 7.5], [12, 13.5]]]]).astype(np.float32) expect(node, inputs=[x], outputs=[y], name="test_averagepool_2d_ceil") @staticmethod def export_averagepool_2d_dilations() -> None: """ input_shape: [1, 1, 4, 4] output_shape: [1, 1, 2, 2] """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2], strides=[1, 1], dilations=[2, 2], ceil_mode=True, ) # input shape: [1, 1, 4, 4] x = np.array( [ [ [ [1, 2, 3, 4], [5, 6, 7, 8], [9, 10, 11, 12], [13, 14, 15, 16], ] ] ] ).astype(np.float32) y = np.array([[[[6, 7], [10, 11]]]]).astype(np.float32) expect(node, inputs=[x], outputs=[y], name="test_averagepool_2d_dilations") @staticmethod def export_averagepool_3d_dilations() -> None: """ input_shape: [1, 1, 4, 4] output_shape: [1, 1, 2, 2] """ node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2, 2], strides=[1, 1, 1], dilations=[2, 2, 2], ceil_mode=True, ) # input shape: [1, 1, 4, 4, 4] x = np.array( [ [ [ [ [1, 2, 3, 4], [5, 6, 7, 8], [9, 10, 11, 12], [13, 14, 15, 16], ], [ [1, 2, 3, 4], [5, 6, 7, 8], [9, 10, 11, 12], [13, 14, 15, 16], ], [ [1, 2, 3, 4], [5, 6, 7, 8], [9, 10, 11, 12], [13, 14, 15, 16], ], [ [1, 2, 3, 4], [5, 6, 7, 8], [9, 10, 11, 12], [13, 14, 15, 16], ], ] ] ] ).astype(np.float32) y = np.array([[[[[6, 7], [10, 11]], [[6, 7], [10, 11]]]]]).astype(np.float32) expect( node, inputs=[x], outputs=[y], name="test_averagepool_3d_dilations_small" ) @staticmethod def export_averagepool_3d_dilations_large() -> None: x_shape = (32, 32, 32) dilations = (2, 2, 2) kernel_shape = (5, 5, 5) strides = (3, 3, 3) count_include_pad = 0 for count_include_pad in (0, 1): for ceil_mode in (True, False): node = onnx.helper.make_node( "AveragePool", inputs=["x"], outputs=["y"], kernel_shape=kernel_shape, strides=strides, dilations=dilations, count_include_pad=count_include_pad, ceil_mode=ceil_mode, ) x = np.random.randn(1, 1, *x_shape).astype(np.float32) out_shape, pads = get_output_shape_explicit_padding( None, x_shape, kernel_shape, strides, dilations=dilations, ceil_mode=ceil_mode, ) padded = np.pad( x, ( (0, 0), (0, 0), (pads[0], pads[3]), (pads[1], pads[4]), (pads[2], pads[5]), ), mode="constant", constant_values=0 if count_include_pad == 1 else np.nan, ) y = pool( padded, (1, 1, *x_shape), kernel_shape, strides, out_shape, "AVG", pads=pads, dilations=dilations, count_include_pad=count_include_pad, ) test_name = f"test_averagepool_3d_dilations_large_count_include_pad_is_{count_include_pad}_ceil_mode_is_{ceil_mode}" expect(node, inputs=[x], outputs=[y], name=test_name)
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58,773
onnx/onnx
refs/heads/main
/onnx/backend/test/runner/__init__.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 from __future__ import annotations import functools import glob import os import re import shutil import sys import tarfile import tempfile import time import unittest from collections import defaultdict from typing import Any, Callable, Iterable, Pattern, Sequence from urllib.request import urlretrieve import numpy as np import onnx import onnx.reference from onnx import ONNX_ML, ModelProto, NodeProto, TypeProto, ValueInfoProto, numpy_helper from onnx.backend.base import Backend from onnx.backend.test.case.test_case import TestCase from onnx.backend.test.loader import load_model_tests from onnx.backend.test.runner.item import TestItem class BackendIsNotSupposedToImplementIt(unittest.SkipTest): pass def retry_execute(times: int) -> Callable[[Callable[..., Any]], Callable[..., Any]]: assert times >= 1 def wrapper(func: Callable[..., Any]) -> Callable[..., Any]: @functools.wraps(func) def wrapped(*args: Any, **kwargs: Any) -> Any: for i in range(1, times + 1): try: return func(*args, **kwargs) except Exception: print(f"{i} times tried") if i == times: raise time.sleep(5 * i) return wrapped return wrapper class Runner: def __init__( self, backend: type[Backend], parent_module: str | None = None ) -> None: self.backend = backend self._parent_module = parent_module self._include_patterns: set[Pattern[str]] = set() self._exclude_patterns: set[Pattern[str]] = set() self._xfail_patterns: set[Pattern[str]] = set() # This is the source of the truth of all test functions. # Properties `test_cases`, `test_suite` and `tests` will be # derived from it. # {category: {name: func}} self._test_items: dict[str, dict[str, TestItem]] = defaultdict(dict) for rt in load_model_tests(kind="node"): self._add_model_test(rt, "Node") for rt in load_model_tests(kind="real"): self._add_model_test(rt, "Real") for rt in load_model_tests(kind="simple"): self._add_model_test(rt, "Simple") for ct in load_model_tests(kind="pytorch-converted"): self._add_model_test(ct, "PyTorchConverted") for ot in load_model_tests(kind="pytorch-operator"): self._add_model_test(ot, "PyTorchOperator") def _get_test_case(self, name: str) -> type[unittest.TestCase]: test_case = type(str(name), (unittest.TestCase,), {}) if self._parent_module: test_case.__module__ = self._parent_module return test_case def include(self, pattern: str) -> Runner: self._include_patterns.add(re.compile(pattern)) return self def exclude(self, pattern: str) -> Runner: self._exclude_patterns.add(re.compile(pattern)) return self def xfail(self, pattern: str) -> Runner: self._xfail_patterns.add(re.compile(pattern)) return self def enable_report(self) -> Runner: import pytest for category, items_map in self._test_items.items(): for item in items_map.values(): item.func = pytest.mark.onnx_coverage(item.proto, category)(item.func) return self @property def _filtered_test_items(self) -> dict[str, dict[str, TestItem]]: filtered: dict[str, dict[str, TestItem]] = {} for category, items_map in self._test_items.items(): filtered[category] = {} for name, item in items_map.items(): if self._include_patterns and ( not any(include.search(name) for include in self._include_patterns) ): item.func = unittest.skip("no matched include pattern")(item.func) for exclude in self._exclude_patterns: if exclude.search(name): item.func = unittest.skip( f'matched exclude pattern "{exclude.pattern}"' )(item.func) for xfail in self._xfail_patterns: if xfail.search(name): item.func = unittest.expectedFailure(item.func) filtered[category][name] = item return filtered @property def test_cases(self) -> dict[str, type[unittest.TestCase]]: """ List of test cases to be applied on the parent scope Example usage: globals().update(BackendTest(backend).test_cases) """ test_cases = {} for category, items_map in self._filtered_test_items.items(): test_case_name = f"OnnxBackend{category}Test" test_case = self._get_test_case(test_case_name) for name, item in sorted(items_map.items()): setattr(test_case, name, item.func) test_cases[test_case_name] = test_case return test_cases @property def test_suite(self) -> unittest.TestSuite: """ TestSuite that can be run by TestRunner Example usage: unittest.TextTestRunner().run(BackendTest(backend).test_suite) """ suite = unittest.TestSuite() for case in sorted( self.test_cases.values(), key=lambda cl: cl.__class__.__name__ ): suite.addTests(unittest.defaultTestLoader.loadTestsFromTestCase(case)) return suite # For backward compatibility (we used to expose `.tests`) @property def tests(self) -> type[unittest.TestCase]: """ One single unittest.TestCase that hosts all the test functions Example usage: onnx_backend_tests = BackendTest(backend).tests """ tests = self._get_test_case("OnnxBackendTest") for items_map in sorted( self._filtered_test_items.values(), key=lambda cl: cl.__class__.__name__ ): for name, item in sorted(items_map.items()): setattr(tests, name, item.func) return tests @classmethod def assert_similar_outputs( cls, ref_outputs: Sequence[Any], outputs: Sequence[Any], rtol: float, atol: float, ) -> None: np.testing.assert_equal(len(outputs), len(ref_outputs)) for i in range(len(outputs)): if isinstance(outputs[i], (list, tuple)): for j in range(len(outputs[i])): cls.assert_similar_outputs( ref_outputs[i][j], outputs[i][j], rtol, atol ) else: np.testing.assert_equal(outputs[i].dtype, ref_outputs[i].dtype) if ref_outputs[i].dtype == object: # type: ignore[attr-defined] np.testing.assert_array_equal(outputs[i], ref_outputs[i]) else: np.testing.assert_allclose( outputs[i], ref_outputs[i], rtol=rtol, atol=atol ) @classmethod @retry_execute(3) def download_model( cls, model_test: TestCase, model_dir: str, models_dir: str ) -> None: # On Windows, NamedTemporaryFile can not be opened for a # second time download_file = tempfile.NamedTemporaryFile(delete=False) try: download_file.close() assert model_test.url print( f"Start downloading model {model_test.model_name} from {model_test.url}" ) urlretrieve(model_test.url, download_file.name) print("Done") with tarfile.open(download_file.name) as t: t.extractall(models_dir) except Exception as e: print(f"Failed to prepare data for model {model_test.model_name}: {e}") raise finally: os.remove(download_file.name) @classmethod def prepare_model_data(cls, model_test: TestCase) -> str: onnx_home = os.path.expanduser( os.getenv("ONNX_HOME", os.path.join("~", ".onnx")) ) models_dir = os.getenv("ONNX_MODELS", os.path.join(onnx_home, "models")) model_dir: str = os.path.join(models_dir, model_test.model_name) if not os.path.exists(os.path.join(model_dir, "model.onnx")): if os.path.exists(model_dir): bi = 0 while True: dest = f"{model_dir}.old.{bi}" if os.path.exists(dest): bi += 1 continue shutil.move(model_dir, dest) break os.makedirs(model_dir) cls.download_model( model_test=model_test, model_dir=model_dir, models_dir=models_dir ) return model_dir def _add_test( self, category: str, test_name: str, test_func: Callable[..., Any], report_item: list[ModelProto | NodeProto | None], devices: Iterable[str] = ("CPU", "CUDA"), ) -> None: # We don't prepend the 'test_' prefix to improve greppability if not test_name.startswith("test_"): raise ValueError(f"Test name must start with test_: {test_name}") def add_device_test(device: str) -> None: device_test_name = f"{test_name}_{device.lower()}" if device_test_name in self._test_items[category]: raise ValueError( f'Duplicated test name "{device_test_name}" in category "{category}"' ) @unittest.skipIf( # type: ignore not self.backend.supports_device(device), f"Backend doesn't support device {device}", ) @functools.wraps(test_func) def device_test_func(*args: Any, **kwargs: Any) -> Any: try: return test_func(*args, device=device, **kwargs) except BackendIsNotSupposedToImplementIt as e: # hacky verbose reporting if "-v" in sys.argv or "--verbose" in sys.argv: print(f"Test {device_test_name} is effectively skipped: {e}") self._test_items[category][device_test_name] = TestItem( device_test_func, report_item ) for device in devices: add_device_test(device) @staticmethod def generate_dummy_data( x: ValueInfoProto, seed: int = 0, name: str = "", random: bool = False ) -> np.ndarray: """ Generates a random tensor based on the input definition. """ if not x.type.tensor_type: raise NotImplementedError( f"Input expected to have tensor type. " f"Unable to generate random data for model {name!r} and input {x}." ) if x.type.tensor_type.elem_type != 1: raise NotImplementedError( f"Currently limited to float tensors. " f"Unable to generate random data for model {name!r} and input {x}." ) shape = tuple( d.dim_value if d.HasField("dim_value") else 1 for d in x.type.tensor_type.shape.dim ) if random: gen = np.random.default_rng(seed=seed) return gen.random(shape, np.float32) n = np.prod(shape) return (np.arange(n).reshape(shape) / n).astype(np.float32) def _add_model_test(self, model_test: TestCase, kind: str) -> None: # model is loaded at runtime, note sometimes it could even # never loaded if the test skipped model_marker: list[ModelProto | NodeProto | None] = [None] def run(test_self: Any, device: str) -> None: if model_test.url is not None and model_test.url.startswith( "onnx/backend/test/data/light/" ): # testing local files model_pb_path = os.path.normpath( os.path.join( os.path.dirname(__file__), "..", "..", "..", "..", model_test.url, ) ) if not os.path.exists(model_pb_path): raise FileNotFoundError(f"Unable to find model {model_pb_path!r}.") onnx_home = os.path.expanduser( os.getenv("ONNX_HOME", os.path.join("~", ".onnx")) ) models_dir = os.getenv( "ONNX_MODELS", os.path.join(onnx_home, "models", "light") ) model_dir: str = os.path.join(models_dir, model_test.model_name) if not os.path.exists(model_dir): os.makedirs(model_dir) use_dummy = True else: if model_test.model_dir is None: model_dir = self.prepare_model_data(model_test) else: model_dir = model_test.model_dir model_pb_path = os.path.join(model_dir, "model.onnx") use_dummy = False if not ONNX_ML and "ai_onnx_ml" in model_dir: return model = onnx.load(model_pb_path) model_marker[0] = model if ( hasattr(self.backend, "is_compatible") and callable(self.backend.is_compatible) and not self.backend.is_compatible(model) ): raise unittest.SkipTest("Not compatible with backend") prepared_model = self.backend.prepare(model, device) assert prepared_model is not None if use_dummy: # When the backend test goes through a test involving a # model stored in onnx/backend/test/data/light, # this function generates expected output coming from # from ReferenceEvaluator run with random inputs. # A couple of models include many Conv operators and the # python implementation is slow (such as test_bvlc_alexnet). with open(model_pb_path, "rb") as f: onx = onnx.load(f) test_data_set = os.path.join(model_dir, "test_data_set_0") if not os.path.exists(test_data_set): os.mkdir(test_data_set) feeds = {} inits = {i.name for i in onx.graph.initializer} n_input = 0 inputs = [] for i in range(len(onx.graph.input)): if onx.graph.input[i].name in inits: continue name = os.path.join(test_data_set, f"input_{n_input}.pb") inputs.append(name) n_input += 1 x = onx.graph.input[i] value = self.generate_dummy_data( x, seed=0, name=model_test.model_name, random=False ) feeds[x.name] = value with open(name, "wb") as f: f.write(onnx.numpy_helper.from_array(value).SerializeToString()) # loads expected output if any available prefix = os.path.splitext(model_pb_path)[0] expected_outputs = [] for i in range(len(onx.graph.output)): name = f"{prefix}_output_{i}.pb" if os.path.exists(name): expected_outputs.append(name) continue expected_outputs = None break if expected_outputs is None: ref = onnx.reference.ReferenceEvaluator(onx) outputs = ref.run(None, feeds) for i, o in enumerate(outputs): name = os.path.join(test_data_set, f"output_{i}.pb") with open(name, "wb") as f: f.write(onnx.numpy_helper.from_array(o).SerializeToString()) else: for i, o in enumerate(expected_outputs): name = os.path.join(test_data_set, f"output_{i}.pb") shutil.copy(o, name) else: # TODO after converting all npz files to protobuf, we can delete this. for test_data_npz in glob.glob( os.path.join(model_dir, "test_data_*.npz") ): test_data = np.load(test_data_npz, encoding="bytes") inputs = list(test_data["inputs"]) outputs = list(prepared_model.run(inputs)) ref_outputs = test_data["outputs"] self.assert_similar_outputs( ref_outputs, outputs, rtol=model_test.rtol, atol=model_test.atol ) for test_data_dir in glob.glob(os.path.join(model_dir, "test_data_set*")): inputs = [] inputs_num = len(glob.glob(os.path.join(test_data_dir, "input_*.pb"))) for i in range(inputs_num): input_file = os.path.join(test_data_dir, f"input_{i}.pb") self._load_proto(input_file, inputs, model.graph.input[i].type) ref_outputs = [] ref_outputs_num = len( glob.glob(os.path.join(test_data_dir, "output_*.pb")) ) for i in range(ref_outputs_num): output_file = os.path.join(test_data_dir, f"output_{i}.pb") self._load_proto( output_file, ref_outputs, model.graph.output[i].type ) outputs = list(prepared_model.run(inputs)) self.assert_similar_outputs( ref_outputs, outputs, rtol=model_test.rtol, atol=model_test.atol ) self._add_test(kind + "Model", model_test.name, run, model_marker) def _load_proto( self, proto_filename: str, target_list: list[np.ndarray | list[Any]], model_type_proto: TypeProto, ) -> None: with open(proto_filename, "rb") as f: protobuf_content = f.read() if model_type_proto.HasField("sequence_type"): sequence = onnx.SequenceProto() sequence.ParseFromString(protobuf_content) target_list.append(numpy_helper.to_list(sequence)) elif model_type_proto.HasField("tensor_type"): tensor = onnx.TensorProto() tensor.ParseFromString(protobuf_content) target_list.append(numpy_helper.to_array(tensor)) elif model_type_proto.HasField("optional_type"): optional = onnx.OptionalProto() optional.ParseFromString(protobuf_content) target_list.append(numpy_helper.to_optional(optional)) # type: ignore[arg-type] else: print( "Loading proto of that specific type (Map/Sparse Tensor) is currently not supported" )
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58,774
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refs/heads/main
/onnx/reference/ops/op_topk.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,W0221,W0622 import numpy as np from onnx.reference.op_run import OpRun def topk_sorted_implementation(X, k, axis, largest): # type: ignore """ See function `_kneighbors_reduce_func <https://github.com/scikit-learn/scikit-learn/blob/main/ sklearn/neighbors/_base.py#L304>`_. """ if isinstance(k, np.ndarray): if k.size != 1: raise RuntimeError(f"k must be an integer not {k!r}.") k = k[0] # This conversion is needed for distribution x86. k = int(k) if len(X.shape) == 2 and axis == 1: sample_range = np.arange(X.shape[0])[:, None] if largest == 0: sorted_indices = np.argpartition(X, axis=axis, kth=k - 1) sorted_indices = sorted_indices[:, :k] # argpartition doesn't guarantee sorted order, so we sort again sorted_indices = sorted_indices[ sample_range, np.argsort(X[sample_range, sorted_indices]) ] else: sorted_indices = np.argpartition(-X, axis=axis, kth=k - 1) sorted_indices = sorted_indices[:, :k] # argpartition doesn't guarantee sorted order, so we sort again sorted_indices = sorted_indices[ sample_range, np.argsort(-X[sample_range, sorted_indices]) ] sorted_distances = X[sample_range, sorted_indices] return sorted_distances, sorted_indices sorted_indices = np.argsort(X, axis=axis) sorted_values = np.sort(X, axis=axis) if largest: sorted_indices = np.flip(sorted_indices, axis=axis) sorted_values = np.flip(sorted_values, axis=axis) ark = np.arange(k) topk_sorted_indices = np.take(sorted_indices, ark, axis=axis) topk_sorted_values = np.take(sorted_values, ark, axis=axis) return topk_sorted_values, topk_sorted_indices class _CommonTopK(OpRun): def _common_run(self, data, ink, axis, largest=1): # type: ignore """ Runtime for operator *TopK*. The implementation is not the most efficient as it sorts everything then extracts the top *k* values. .. warning:: ONNX specifications may be imprecise in case of negative value for axis. The implementation follows what `onnxruntime` does in `top_k.cc <https://github.com/Microsoft/onnxruntime/blob/main/onnxruntime/core/providers/cpu/math/top_k.cc#L63>`_. """ k = ink[0] axis = axis if axis >= 0 else (axis + len(data.shape)) # type: ignore sort, sorti = topk_sorted_implementation(data, k, axis, largest) return (sort, sorti.astype(np.int64)) class TopK_1(_CommonTopK): def _run(self, data, k=None, axis=None): # type: ignore """ Runtime for operator *TopK*. The implementation is not the most efficient as it sorts everything then extracts the top *k* values. .. warning:: ONNX specifications may be imprecise in case of negative value for axis. The implementation follows what `onnxruntime` does in `top_k.cc <https://github.com/Microsoft/onnxruntime/blob/main/onnxruntime/core/providers/cpu/math/top_k.cc#L63>`_. """ return _CommonTopK._common_run(self, data, [k], axis=axis) # type: ignore class TopK_10(_CommonTopK): def _run(self, data, ink, axis=None): # type: ignore """ Runtime for operator *TopK*. The implementation is not the most efficient as it sorts everything then extracts the top *k* values. .. warning:: ONNX specifications may be imprecise in case of negative value for axis. The implementation follows what `onnxruntime` does in `top_k.cc <https://github.com/Microsoft/onnxruntime/blob/main/onnxruntime/core/providers/cpu/math/top_k.cc#L63>`_. """ return _CommonTopK._common_run(self, data, ink, axis=axis) class TopK_11(_CommonTopK): def _run(self, data, ink, axis=None, largest=None, sorted=None): # type: ignore """ Runtime for operator *TopK*. The implementation is not the most efficient as it sorts everything then extracts the top *k* values. .. warning:: ONNX specifications may be imprecise in case of negative value for axis. The implementation follows what `onnxruntime` does in `top_k.cc <https://github.com/Microsoft/onnxruntime/blob/main/onnxruntime/core/providers/cpu/math/top_k.cc#L63>`_. """ if sorted not in (True, 1): raise RuntimeError("TopK does not implement anything for sorted=0.") return _CommonTopK._common_run(self, data, ink, axis=axis, largest=largest)
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58,775
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_image_decoder.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=C0123,C3001,R0912,R0913,R0914,R1730,W0221,W0613 import numpy as np from onnx.reference.op_run import OpRun class ImageDecoder(OpRun): def _run( # type: ignore self, encoded, pixel_format="RGB", ): try: # pylint: disable=import-outside-toplevel` import cv2 except ImportError as e: raise ImportError( "opencv-python must be installed to use the reference implementation of the ImageDecoder operator" ) from e decoded = None if pixel_format == "BGR": decoded = cv2.imdecode(encoded, cv2.IMREAD_COLOR) elif pixel_format == "RGB": decoded = cv2.imdecode(encoded, cv2.IMREAD_COLOR) decoded = cv2.cvtColor(decoded, cv2.COLOR_BGR2RGB) elif pixel_format == "Grayscale": decoded = cv2.imdecode(encoded, cv2.IMREAD_GRAYSCALE) decoded = np.expand_dims(decoded, axis=2) # (H, W) to (H, W, 1) else: raise RuntimeError(f"pixel_format={pixel_format!r} is not supported.") return (decoded,)
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58,776
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_non_max_suppression.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0902,R0911,R0912,R0913,R0914,W0221 import dataclasses from typing import Optional, Tuple import numpy as np from onnx.reference.op_run import OpRun @dataclasses.dataclass class PrepareContext: boxes_data_: Optional[np.ndarray] = None boxes_size_: int = 0 scores_data_: Optional[np.ndarray] = None scores_size_: int = 0 max_output_boxes_per_class_: Optional[np.ndarray] = None score_threshold_: Optional[np.ndarray] = None iou_threshold_: Optional[np.ndarray] = None num_batches_: int = 0 num_classes_: int = 0 num_boxes_: int = 0 class SelectedIndex: __slots__ = ("batch_index_", "class_index_", "box_index_") def __init__( self, batch_index: int = 0, class_index: int = 0, box_index: int = 0 ) -> None: self.batch_index_ = batch_index self.class_index_ = class_index self.box_index_ = box_index def max_min(lhs: float, rhs: float) -> Tuple[float, float]: if lhs >= rhs: return rhs, lhs return lhs, rhs def suppress_by_iou( boxes_data: np.ndarray, box_index1: int, box_index2: int, center_point_box: int, iou_threshold: float, ) -> bool: box1 = boxes_data[box_index1] box2 = boxes_data[box_index2] # center_point_box_ only support 0 or 1 if center_point_box == 0: # boxes data format [y1, x1, y2, x2] x1_min, x1_max = max_min(box1[1], box1[3]) x2_min, x2_max = max_min(box2[1], box2[3]) intersection_x_min = max(x1_min, x2_min) intersection_x_max = min(x1_max, x2_max) if intersection_x_max <= intersection_x_min: return False y1_min, y1_max = max_min(box1[0], box1[2]) y2_min, y2_max = max_min(box2[0], box2[2]) intersection_y_min = max(y1_min, y2_min) intersection_y_max = min(y1_max, y2_max) if intersection_y_max <= intersection_y_min: return False else: # 1 == center_point_box_ => boxes data format [x_center, y_center, width, height] box1_width_half = box1[2] / 2 box1_height_half = box1[3] / 2 box2_width_half = box2[2] / 2 box2_height_half = box2[3] / 2 x1_min = box1[0] - box1_width_half x1_max = box1[0] + box1_width_half x2_min = box2[0] - box2_width_half x2_max = box2[0] + box2_width_half intersection_x_min = max(x1_min, x2_min) intersection_x_max = min(x1_max, x2_max) if intersection_x_max <= intersection_x_min: return False y1_min = box1[1] - box1_height_half y1_max = box1[1] + box1_height_half y2_min = box2[1] - box2_height_half y2_max = box2[1] + box2_height_half intersection_y_min = max(y1_min, y2_min) intersection_y_max = min(y1_max, y2_max) if intersection_y_max <= intersection_y_min: return False intersection_area = (intersection_x_max - intersection_x_min) * ( intersection_y_max - intersection_y_min ) if intersection_area <= 0: return False area1 = (x1_max - x1_min) * (y1_max - y1_min) area2 = (x2_max - x2_min) * (y2_max - y2_min) union_area = area1 + area2 - intersection_area if area1 <= 0 or area2 <= 0 or union_area <= 0: return False intersection_over_union = intersection_area / union_area return intersection_over_union > iou_threshold class BoxInfo: def __init__(self, score: float = 0, idx: int = -1): self.score_ = score self.idx_ = idx def __lt__(self, rhs) -> bool: # type: ignore return self.score_ < rhs.score_ or ( # type: ignore self.score_ == rhs.score_ and self.idx_ > rhs.idx_ ) def __repr__(self) -> str: return f"BoxInfo({self.score_}, {self.idx_})" class NonMaxSuppression(OpRun): def get_thresholds_from_inputs( self, pc: PrepareContext, max_output_boxes_per_class: int, iou_threshold: float, score_threshold: float, ) -> Tuple[int, float, float]: if pc.max_output_boxes_per_class_ is not None: max_output_boxes_per_class = max(pc.max_output_boxes_per_class_[0], 0) if pc.iou_threshold_ is not None: iou_threshold = pc.iou_threshold_[0] if pc.score_threshold_ is not None: score_threshold = pc.score_threshold_[0] return max_output_boxes_per_class, iou_threshold, score_threshold def prepare_compute( # type: ignore self, pc: PrepareContext, boxes_tensor: np.ndarray, # float scores_tensor: np.ndarray, # float max_output_boxes_per_class_tensor: np.ndarray, # int iou_threshold_tensor: np.ndarray, # float score_threshold_tensor: np.ndarray, # float ): pc.boxes_data_ = boxes_tensor pc.scores_data_ = scores_tensor if max_output_boxes_per_class_tensor.size != 0: pc.max_output_boxes_per_class_ = max_output_boxes_per_class_tensor if iou_threshold_tensor.size != 0: pc.iou_threshold_ = iou_threshold_tensor if score_threshold_tensor.size != 0: pc.score_threshold_ = score_threshold_tensor pc.boxes_size_ = boxes_tensor.size pc.scores_size_ = scores_tensor.size boxes_dims = boxes_tensor.shape scores_dims = scores_tensor.shape pc.num_batches_ = boxes_dims[0] pc.num_classes_ = scores_dims[1] pc.num_boxes_ = boxes_dims[1] def _run( # type: ignore self, boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, center_point_box, ): center_point_box = center_point_box or self.center_point_box # type: ignore pc = PrepareContext() self.prepare_compute( pc, boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ) ( max_output_boxes_per_class, iou_threshold, score_threshold, ) = self.get_thresholds_from_inputs(pc, 0, 0, 0) if max_output_boxes_per_class.size == 0: return (np.empty((0,), dtype=np.int64),) boxes_data = pc.boxes_data_ scores_data = pc.scores_data_ selected_indices = [] # std::vector<BoxInfo> selected_boxes_inside_class; # selected_boxes_inside_class.reserve( # std::min<size_t>(static_cast<size_t>(max_output_boxes_per_class), pc.num_boxes_)); for batch_index in range(pc.num_batches_): for class_index in range(pc.num_classes_): box_score_offset = (batch_index, class_index) batch_boxes = boxes_data[batch_index] # type: ignore # std::vector<BoxInfo> candidate_boxes; # candidate_boxes.reserve(pc.num_boxes_); # Filter by score_threshold_ candidate_boxes = [] class_scores = scores_data[box_score_offset] # type: ignore if pc.score_threshold_ is not None: for box_index in range(pc.num_boxes_): if class_scores[box_index] > score_threshold: candidate_boxes.append( BoxInfo(class_scores[box_index], box_index) ) else: for box_index in range(pc.num_boxes_): candidate_boxes.append( BoxInfo(class_scores[box_index], box_index) ) sorted_boxes = sorted(candidate_boxes) selected_boxes_inside_class = [] # type: ignore # Get the next box with top score, filter by iou_threshold. while ( len(sorted_boxes) > 0 and len(selected_boxes_inside_class) < max_output_boxes_per_class ): next_top_score = sorted_boxes[-1] selected = True # Check with existing selected boxes for this class, # suppress if exceed the IOU (Intersection Over Union) threshold. for selected_index in selected_boxes_inside_class: if suppress_by_iou( batch_boxes, next_top_score.idx_, selected_index.idx_, center_point_box, iou_threshold, ): selected = False break if selected: selected_boxes_inside_class.append(next_top_score) selected_indices.append( SelectedIndex(batch_index, class_index, next_top_score.idx_) ) sorted_boxes.pop() result = np.empty((len(selected_indices), 3), dtype=np.int64) for i in range(result.shape[0]): result[i, 0] = selected_indices[i].batch_index_ result[i, 1] = selected_indices[i].class_index_ result[i, 2] = selected_indices[i].box_index_ return (result,)
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58,777
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/logsoftmax.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect def logsoftmax(x: np.ndarray, axis: int = -1) -> np.ndarray: x_max = np.max(x, axis=axis, keepdims=True) tmp = np.exp(x - x_max) s = np.sum(tmp, axis=axis, keepdims=True) return (x - x_max) - np.log(s) class LogSoftmax(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "LogSoftmax", inputs=["x"], outputs=["y"], ) x = np.array([[-1, 0, 1]]).astype(np.float32) # expected output # [[-2.4076061 -1.407606 -0.407606 ]] y = logsoftmax(x) expect(node, inputs=[x], outputs=[y], name="test_logsoftmax_example_1") @staticmethod def export_logsoftmax_axis() -> None: x = np.array([[0, 1, 2, 3], [10000, 10001, 10002, 10003]]).astype(np.float32) # expected output # [[-3.4401896 -2.4401896 -1.4401896 -0.44018966] # [-3.4401896 -2.4401896 -1.4401896 -0.44018966]] y = logsoftmax(x) node = onnx.helper.make_node( "LogSoftmax", inputs=["x"], outputs=["y"], ) expect(node, inputs=[x], outputs=[y], name="test_logsoftmax_large_number") x = np.abs(np.random.randn(3, 4, 5).astype(np.float32)) node = onnx.helper.make_node( "LogSoftmax", inputs=["x"], outputs=["y"], axis=0, ) y = logsoftmax(x, axis=0) expect(node, inputs=[x], outputs=[y], name="test_logsoftmax_axis_0") node = onnx.helper.make_node( "LogSoftmax", inputs=["x"], outputs=["y"], axis=1, ) y = logsoftmax(x, axis=1) expect(node, inputs=[x], outputs=[y], name="test_logsoftmax_axis_1") node = onnx.helper.make_node( "LogSoftmax", inputs=["x"], outputs=["y"], axis=2, ) y = logsoftmax(x, axis=2) expect(node, inputs=[x], outputs=[y], name="test_logsoftmax_axis_2") node = onnx.helper.make_node( "LogSoftmax", inputs=["x"], outputs=["y"], axis=-1, ) y = logsoftmax(x, axis=-1) expect(node, inputs=[x], outputs=[y], name="test_logsoftmax_negative_axis") # default axis is -1 node = onnx.helper.make_node( "LogSoftmax", inputs=["x"], outputs=["y"], ) expect(node, inputs=[x], outputs=[y], name="test_logsoftmax_default_axis")
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58,778
onnx/onnx
refs/heads/main
/onnx/reference/ops/aionnx_preview_training/op_adam.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,R0914,W0221 import numpy as np from onnx.reference.ops.aionnx_preview_training._op_run_training import OpRunTraining def _apply_adam( # type: ignore r, t, x, g, v, h, norm_coefficient, norm_coefficient_post, alpha, beta, epsilon ): # type: ignore # Add gradient of regularization term. g_regularized = norm_coefficient * x + g # Update momentum. v_new = alpha * v + (1 - alpha) * g_regularized # Update second-order momentum. h_new = beta * h + (1 - beta) * (g_regularized * g_regularized) # Compute element-wise square root. h_sqrt = np.sqrt(h_new) + epsilon # Adjust learning rate. r_adjusted = None if t > 0: # Consider bias correction on momentums. r_adjusted = r * np.sqrt(1 - beta**t) / (1 - alpha**t) else: # No bias correction on momentums. r_adjusted = r # Apply Adam update rule. x_new = x - r_adjusted * (v_new / h_sqrt) # It's possible to apply regularization in the end. x_final = (1 - norm_coefficient_post) * x_new return x_final, v_new, h_new class Adam(OpRunTraining): def _run( # type: ignore self, *data, alpha=None, beta=None, epsilon=None, norm_coefficient=None, norm_coefficient_post=None, ): if len(data) == 6: return self._run1( # type: ignore *data, alpha=alpha, beta=beta, epsilon=epsilon, norm_coefficient=norm_coefficient, norm_coefficient_post=norm_coefficient_post, ) n = (len(data) - 2) // 4 xs = [] vs = [] hs = [] for i in range(0, n): a, b, c = self._run1( # type: ignore *data[:2], data[2 + i], data[2 + n + i], data[2 + n * 2 + i], data[2 + n * 3 + i], alpha=alpha, beta=beta, epsilon=epsilon, norm_coefficient=norm_coefficient, norm_coefficient_post=norm_coefficient_post, ) xs.append(a.astype(np.float32)) vs.append(b.astype(np.float32)) hs.append(c.astype(np.float32)) return tuple(xs + vs + hs) def _run1( # type: ignore self, r, t, x, g, v, h, alpha=None, beta=None, epsilon=None, norm_coefficient=None, norm_coefficient_post=None, ): x_new, v_new, h_new = _apply_adam( r, t, x, g, v, h, norm_coefficient, norm_coefficient_post, alpha, beta, epsilon, ) return x_new, v_new, h_new
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58,779
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_affine_grid.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0912,R0913,R0914,R0915,R1702,R1716,W0221 import numpy as np from onnx.reference.op_run import OpRun def construct_original_grid(data_size, align_corners): is_2d = len(data_size) == 2 size_zeros = np.zeros(data_size) original_grid = [np.ones(data_size)] for dim, dim_size in enumerate(data_size): if align_corners == 1: step = 2.0 / (dim_size - 1) start = -1 stop = 1 + 0.0001 a = np.arange(start, stop, step) else: step = 2.0 / dim_size start = -1 + step / 2 stop = 1 a = np.arange(start, stop, step) if dim == 0: if is_2d: y = np.reshape(a, (dim_size, 1)) + size_zeros original_grid = [y, *original_grid] else: z = np.reshape(a, (dim_size, 1, 1)) + size_zeros original_grid = [z, *original_grid] elif dim == 1: if is_2d: x = np.reshape(a, (1, dim_size)) + size_zeros original_grid = [x, *original_grid] else: y = np.reshape(a, (1, dim_size, 1)) + size_zeros original_grid = [y, *original_grid] else: x = np.reshape(a, (1, dim_size)) + size_zeros original_grid = [x, *original_grid] return np.stack(original_grid, axis=2 if is_2d else 3) def apply_affine_transform(theta_n, original_grid_homo): # theta_n: (N, 2, 3) for 2D, (N, 3, 4) for 3D # original_grid_homo: (H, W, 3) for 2D, (D, H, W, 4) for 3D assert ( theta_n.ndim == 3 ), "theta_n shall have shape of (N, 2, 3) for 2D, (N, 3, 4) for 3D" if original_grid_homo.ndim == 3: N, dim_2d, dim_homo = theta_n.shape assert dim_2d == 2 and dim_homo == 3 H, W, dim_homo = original_grid_homo.shape assert dim_homo == 3 # reshape to [H * W, dim_homo] and then transpose to [dim_homo, H * W] original_grid_transposed = np.transpose( np.reshape(original_grid_homo, (H * W, dim_homo)) ) grid_n = np.matmul( theta_n, original_grid_transposed ) # shape (N, dim_2d, H * W) # transpose to (N, H * W, dim_2d) and then reshape to (N, H, W, dim_2d) grid = np.reshape(np.transpose(grid_n, (0, 2, 1)), (N, H, W, dim_2d)) return grid else: assert original_grid_homo.ndim == 4 N, dim_3d, dim_homo = theta_n.shape assert dim_3d == 3 and dim_homo == 4 D, H, W, dim_homo = original_grid_homo.shape assert dim_homo == 4 # reshape to [D * H * W, dim_homo] and then transpose to [dim_homo, D * H * W] original_grid_transposed = np.transpose( np.reshape(original_grid_homo, (D * H * W, dim_homo)) ) grid_n = np.matmul( theta_n, original_grid_transposed ) # shape (N, dim_3d, D * H * W) # transpose to (N, D * H * W, dim_3d) and then reshape to (N, D, H, W, dim_3d) grid = np.reshape(np.transpose(grid_n, (0, 2, 1)), (N, D, H, W, dim_3d)) return grid class AffineGrid(OpRun): def _run(self, theta, size, align_corners=None): # type: ignore align_corners = align_corners or self.align_corners # type: ignore _, _, *data_size = size original_grid = construct_original_grid(data_size, align_corners) grid = apply_affine_transform(theta, original_grid) return (grid,)
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58,780
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_lp_normalization.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.ops._op import OpRunUnaryNum class LpNormalization(OpRunUnaryNum): def _run(self, x, axis=None, p=None): # type: ignore axis = axis or self.axis # type: ignore p = p or self.p # type: ignore norm = np.power(np.power(x, p).sum(axis=axis), 1.0 / p) # type: ignore norm = np.expand_dims(norm, axis) # type: ignore return ((x / norm).astype(x.dtype),)
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refs/heads/main
/onnx/reference/ops/op_rnn.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,R0914,W0221,W0613 import numpy as np from onnx.reference.op_run import OpRun class CommonRNN(OpRun): def __init__(self, onnx_node, run_params): # type: ignore OpRun.__init__(self, onnx_node, run_params) if self.direction in ("forward", "reverse"): # type: ignore self.num_directions = 1 # type: ignore elif self.direction == "bidirectional": # type: ignore self.num_directions = 2 # type: ignore else: raise RuntimeError(f"Unknown direction {self.direction!r}.") # type: ignore if ( self.activation_alpha is not None # type: ignore and len(self.activation_alpha) != self.num_directions # type: ignore ): raise RuntimeError( f"activation_alpha must have the same size as num_directions={self.num_directions}." # type: ignore ) if ( self.activation_beta is not None # type: ignore and len(self.activation_beta) != self.num_directions # type: ignore ): raise RuntimeError( f"activation_beta must have the same size as num_directions={self.num_directions}." # type: ignore ) self.f1 = self.choose_act( self.activations[0], # type: ignore self.activation_alpha[0] # type: ignore if self.activation_alpha is not None and len(self.activation_alpha) > 0 # type: ignore else None, self.activation_beta[0] # type: ignore if self.activation_beta is not None and len(self.activation_beta) > 0 # type: ignore else None, ) if len(self.activations) > 1: # type: ignore self.f2 = self.choose_act( self.activations[1], # type: ignore self.activation_alpha[1] # type: ignore if self.activation_alpha is not None and len(self.activation_alpha) > 1 # type: ignore else None, self.activation_beta[1] # type: ignore if self.activation_beta is not None and len(self.activation_beta) > 1 # type: ignore else None, ) self.n_outputs = len(onnx_node.output) def choose_act(self, name, alpha, beta): # type: ignore if name in ("Tanh", "tanh"): return self._f_tanh if name in ("Affine", "affine"): return lambda x: x * alpha + beta raise RuntimeError(f"Unknown activation function {name!r}.") def _f_tanh(self, x): # type: ignore return np.tanh(x) def _step(self, X, R, B, W, H_0): # type: ignore h_list = [] H_t = H_0 for x in np.split(X, X.shape[0], axis=0): H = self.f1( np.dot(x, np.transpose(W)) + np.dot(H_t, np.transpose(R)) + np.add(*np.split(B, 2)) ) h_list.append(H) H_t = H concatenated = np.concatenate(h_list) if self.num_directions == 1: output = np.expand_dims(concatenated, 1) return output, h_list[-1] def _run( # type: ignore self, X, W, R, B=None, sequence_lens=None, initial_h=None, activation_alpha=None, activation_beta=None, activations=None, clip=None, direction=None, hidden_size=None, layout=None, ): # TODO: support overridden attributes. self.num_directions = W.shape[0] if self.num_directions == 1: R = np.squeeze(R, axis=0) W = np.squeeze(W, axis=0) if B is not None: B = np.squeeze(B, axis=0) if sequence_lens is not None: sequence_lens = np.squeeze(sequence_lens, axis=0) if initial_h is not None: initial_h = np.squeeze(initial_h, axis=0) hidden_size = R.shape[-1] batch_size = X.shape[1] X = X if layout == 0 else np.swapaxes(X, 0, 1) b = B if B is not None else np.zeros(2 * hidden_size, dtype=X.dtype) h_0 = ( initial_h if initial_h is not None else np.zeros((batch_size, hidden_size), dtype=X.dtype) ) B = b H_0 = h_0 else: raise NotImplementedError( f"Unsupported value {self.num_directions} for num_directions and operator {self.__class__.__name__!r}." ) Y, Y_h = self._step(X, R, B, W, H_0) if layout == 1: Y = np.transpose(Y, [2, 0, 1, 3]) Y_h = Y[:, :, -1, :] Y = Y.astype(X.dtype) return (Y,) if self.n_outputs == 1 else (Y, Y_h) class RNN_7(CommonRNN): pass class RNN_14(CommonRNN): pass
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58,782
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/not.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Not(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "Not", inputs=["x"], outputs=["not"], ) # 2d x = (np.random.randn(3, 4) > 0).astype(bool) expect(node, inputs=[x], outputs=[np.logical_not(x)], name="test_not_2d") # 3d x = (np.random.randn(3, 4, 5) > 0).astype(bool) expect(node, inputs=[x], outputs=[np.logical_not(x)], name="test_not_3d") # 4d x = (np.random.randn(3, 4, 5, 6) > 0).astype(bool) expect(node, inputs=[x], outputs=[np.logical_not(x)], name="test_not_4d")
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58,783
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_reduce_sum.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.ops._op import OpRunReduceNumpy class ReduceSum_1(OpRunReduceNumpy): def _run(self, x, axes=None, keepdims=None): # type: ignore # pylint: disable=W0221 axes = tuple(axes) if axes is not None else None res = np.sum(x, axis=axes, keepdims=keepdims, dtype=x.dtype) if keepdims == 0 and not isinstance(res, np.ndarray): # The runtime must return a numpy array of a single float. res = np.array(res) return (res,) class ReduceSum_13(OpRunReduceNumpy): def _run(self, x, axes=None, keepdims=None, noop_with_empty_axes=None): # type: ignore if (axes is None or axes.shape == (0,)) and noop_with_empty_axes: return (x,) axes = self.handle_axes(axes) try: res = np.sum(x, axis=axes, keepdims=keepdims, dtype=x.dtype) if keepdims == 0 and not isinstance(res, np.ndarray): # The runtime must return a numpy array of a single float. res = np.array(res) return (res,) # type: ignore except TypeError as e: raise TypeError( f"Unable to reduce shape {x.shape!r} with axes={axes!r} and keepdims={keepdims}." ) from e
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58,784
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_mean.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 from onnx.reference.op_run import OpRun class Mean(OpRun): def _run(self, *args): # type: ignore res = args[0].copy() for m in args[1:]: res += m return ((res / len(args)).astype(args[0].dtype),)
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58,785
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_roi_align.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0902,R0912,R0913,R0914,R0915,R1702,W0221 from typing import Tuple import numpy as np from onnx.reference.op_run import OpRun class PreCalc: def __init__(self, pos1=0, pos2=0, pos3=0, pos4=0, w1=0, w2=0, w3=0, w4=0): # type: ignore self.pos1 = pos1 self.pos2 = pos2 self.pos3 = pos3 self.pos4 = pos4 self.w1 = w1 self.w2 = w2 self.w3 = w3 self.w4 = w4 def __repr__(self) -> str: return f"PreCalc({self.pos1},{self.pos2},{self.pos3},{self.pos4},{self.w1},{self.w2},{self.w3},{self.w4})" class RoiAlign(OpRun): @staticmethod def pre_calc_for_bilinear_interpolate( # type: ignore height: int, width: int, pooled_height: int, pooled_width: int, iy_upper: int, ix_upper: int, roi_start_h, roi_start_w, bin_size_h, bin_size_w, roi_bin_grid_h: int, roi_bin_grid_w: int, pre_calc, ): pre_calc_index = 0 for ph in range(pooled_height): for pw in range(pooled_width): for iy in range(iy_upper): yy = ( roi_start_h + ph * bin_size_h + (iy + 0.5) * bin_size_h / roi_bin_grid_h ) for ix in range(ix_upper): xx = ( roi_start_w + pw * bin_size_w + (ix + 0.5) * bin_size_w / roi_bin_grid_w ) x = xx y = yy # deal with: inverse elements are out of feature map boundary if y < -1.0 or y > height or x < -1.0 or x > width: pc = pre_calc[pre_calc_index] pc.pos1 = 0 pc.pos2 = 0 pc.pos3 = 0 pc.pos4 = 0 pc.w1 = 0 pc.w2 = 0 pc.w3 = 0 pc.w4 = 0 pre_calc_index += 1 continue y = max(y, 0) x = max(x, 0) y_low = int(y) x_low = int(x) if y_low >= height - 1: y_high = y_low = height - 1 y = y_low else: y_high = y_low + 1 if x_low >= width - 1: x_high = x_low = width - 1 x = x_low else: x_high = x_low + 1 ly = y - y_low lx = x - x_low hy = 1.0 - ly hx = 1.0 - lx w1 = hy * hx w2 = hy * lx w3 = ly * hx w4 = ly * lx # save weights and indeces pc = PreCalc() pc.pos1 = y_low * width + x_low pc.pos2 = y_low * width + x_high pc.pos3 = y_high * width + x_low pc.pos4 = y_high * width + x_high pc.w1 = w1 pc.w2 = w2 pc.w3 = w3 pc.w4 = w4 pre_calc[pre_calc_index] = pc pre_calc_index += 1 @staticmethod def roi_align_forward( # type: ignore output_shape: Tuple[int, int, int, int], bottom_data, spatial_scale, height: int, width: int, sampling_ratio, bottom_rois, num_roi_cols: int, top_data, mode, half_pixel: bool, batch_indices_ptr, ): n_rois = output_shape[0] channels = output_shape[1] pooled_height = output_shape[2] pooled_width = output_shape[3] # 100 is a random chosed value, need be tuned for n in range(n_rois): index_n = n * channels * pooled_width * pooled_height # bottom_rois offset_bottom_rois = n * num_roi_cols roi_batch_ind = batch_indices_ptr[n] # Do not using rounding; this implementation detail is critical. offset = 0.5 if half_pixel else 0.0 roi_start_w = bottom_rois[offset_bottom_rois + 0] * spatial_scale - offset roi_start_h = bottom_rois[offset_bottom_rois + 1] * spatial_scale - offset roi_end_w = bottom_rois[offset_bottom_rois + 2] * spatial_scale - offset roi_end_h = bottom_rois[offset_bottom_rois + 3] * spatial_scale - offset roi_width = roi_end_w - roi_start_w roi_height = roi_end_h - roi_start_h if not half_pixel: # Force malformed ROIs to be 1x1 roi_width = max(roi_width, 1.0) roi_height = max(roi_height, 1.0) bin_size_h = roi_height / pooled_height bin_size_w = roi_width / pooled_width # We use roi_bin_grid to sample the grid and mimic integral roi_bin_grid_h = ( int(sampling_ratio) if sampling_ratio > 0 else int(np.ceil(roi_height / pooled_height)) ) roi_bin_grid_w = ( int(sampling_ratio) if sampling_ratio > 0 else int(np.ceil(roi_width / pooled_width)) ) # We do average (integral) pooling inside a bin count = int(max(roi_bin_grid_h * roi_bin_grid_w, 1)) # we want to precalculate indices and weights shared by all channels, # this is the key point of optimization pre_calc = [ PreCalc() for i in range( roi_bin_grid_h * roi_bin_grid_w * pooled_width * pooled_height ) ] RoiAlign.pre_calc_for_bilinear_interpolate( height, width, pooled_height, pooled_width, roi_bin_grid_h, roi_bin_grid_w, roi_start_h, roi_start_w, bin_size_h, bin_size_w, roi_bin_grid_h, roi_bin_grid_w, pre_calc, ) for c in range(channels): index_n_c = index_n + c * pooled_width * pooled_height # bottom_data offset_bottom_data = int( (roi_batch_ind * channels + c) * height * width ) pre_calc_index = 0 for ph in range(pooled_height): for pw in range(pooled_width): index = index_n_c + ph * pooled_width + pw output_val = 0.0 if mode == "avg": # avg pooling for _iy in range(roi_bin_grid_h): for _ix in range(roi_bin_grid_w): pc = pre_calc[pre_calc_index] output_val += ( pc.w1 * bottom_data[offset_bottom_data + pc.pos1] + pc.w2 * bottom_data[offset_bottom_data + pc.pos2] + pc.w3 * bottom_data[offset_bottom_data + pc.pos3] + pc.w4 * bottom_data[offset_bottom_data + pc.pos4] ) pre_calc_index += 1 output_val /= count else: # max pooling max_flag = False for _iy in range(roi_bin_grid_h): for _ix in range(roi_bin_grid_w): pc = pre_calc[pre_calc_index] val = max( pc.w1 * bottom_data[offset_bottom_data + pc.pos1], pc.w2 * bottom_data[offset_bottom_data + pc.pos2], pc.w3 * bottom_data[offset_bottom_data + pc.pos3], pc.w4 * bottom_data[offset_bottom_data + pc.pos4], ) if not max_flag: output_val = val max_flag = True else: output_val = max(output_val, val) pre_calc_index += 1 top_data[index] = output_val def _run( # type: ignore self, X, rois, batch_indices, coordinate_transformation_mode=None, mode=None, output_height=None, output_width=None, sampling_ratio=None, spatial_scale=None, ): coordinate_transformation_mode = coordinate_transformation_mode or self.coordinate_transformation_mode # type: ignore mode = mode or self.mode # type: ignore output_height = output_height or self.output_height # type: ignore output_width = output_width or self.output_width # type: ignore sampling_ratio = sampling_ratio or self.sampling_ratio # type: ignore spatial_scale = spatial_scale or self.spatial_scale # type: ignore num_channels = X.shape[1] num_rois = batch_indices.shape[0] num_roi_cols = rois.shape[1] y_dims = (num_rois, num_channels, output_height, output_width) Y = np.empty(y_dims, dtype=X.dtype).flatten() self.roi_align_forward( y_dims, X.flatten(), spatial_scale, X.shape[2], # height, 3 X.shape[3], # width, 4 sampling_ratio, rois.flatten(), num_roi_cols, Y, mode.lower(), coordinate_transformation_mode.lower() == "half_pixel", batch_indices.flatten(), ) return (Y.reshape(y_dims).astype(X.dtype),)
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58,786
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_center_crop_pad.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0912,R0914,R1702,W0221 import numpy as np from onnx.reference.op_run import OpRun class CenterCropPad(OpRun): def _run(self, input_data, shape, axes=None): # type: ignore axes = axes or self.axes # type: ignore input_rank = len(input_data.shape) if axes is None: axes = list(range(input_rank)) else: axes = [axis if axis >= 0 else axis + input_rank for axis in axes] pad_slices = [slice(0, s) for s in input_data.shape] crop_slices = [slice(0, s) for s in input_data.shape] new_shape = list(input_data.shape) for a, sh in zip(axes, shape): dim = input_data.shape[a] if sh == a: pass elif sh < dim: new_shape[a] = sh d = dim - sh if d % 2 == 0: d //= 2 sl = slice(d, dim - d) else: d //= 2 sl = slice(d, dim - d - 1) crop_slices[a] = sl else: # sh > dim new_shape[a] = sh d = sh - dim if d % 2 == 0: d //= 2 sl = slice(d, sh - d) else: d //= 2 sl = slice(d, sh - d - 1) pad_slices[a] = sl res = np.zeros(tuple(new_shape), dtype=input_data.dtype) cropped = input_data[tuple(crop_slices)] res[tuple(pad_slices)] = cropped return (res,)
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58,787
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/nonmaxsuppression.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class NonMaxSuppression(Base): @staticmethod def export_nonmaxsuppression_suppress_by_IOU() -> None: node = onnx.helper.make_node( "NonMaxSuppression", inputs=[ "boxes", "scores", "max_output_boxes_per_class", "iou_threshold", "score_threshold", ], outputs=["selected_indices"], ) boxes = np.array( [ [ [0.0, 0.0, 1.0, 1.0], [0.0, 0.1, 1.0, 1.1], [0.0, -0.1, 1.0, 0.9], [0.0, 10.0, 1.0, 11.0], [0.0, 10.1, 1.0, 11.1], [0.0, 100.0, 1.0, 101.0], ] ] ).astype(np.float32) scores = np.array([[[0.9, 0.75, 0.6, 0.95, 0.5, 0.3]]]).astype(np.float32) max_output_boxes_per_class = np.array([3]).astype(np.int64) iou_threshold = np.array([0.5]).astype(np.float32) score_threshold = np.array([0.0]).astype(np.float32) selected_indices = np.array([[0, 0, 3], [0, 0, 0], [0, 0, 5]]).astype(np.int64) expect( node, inputs=[ boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ], outputs=[selected_indices], name="test_nonmaxsuppression_suppress_by_IOU", ) @staticmethod def export_nonmaxsuppression_suppress_by_IOU_and_scores() -> None: node = onnx.helper.make_node( "NonMaxSuppression", inputs=[ "boxes", "scores", "max_output_boxes_per_class", "iou_threshold", "score_threshold", ], outputs=["selected_indices"], ) boxes = np.array( [ [ [0.0, 0.0, 1.0, 1.0], [0.0, 0.1, 1.0, 1.1], [0.0, -0.1, 1.0, 0.9], [0.0, 10.0, 1.0, 11.0], [0.0, 10.1, 1.0, 11.1], [0.0, 100.0, 1.0, 101.0], ] ] ).astype(np.float32) scores = np.array([[[0.9, 0.75, 0.6, 0.95, 0.5, 0.3]]]).astype(np.float32) max_output_boxes_per_class = np.array([3]).astype(np.int64) iou_threshold = np.array([0.5]).astype(np.float32) score_threshold = np.array([0.4]).astype(np.float32) selected_indices = np.array([[0, 0, 3], [0, 0, 0]]).astype(np.int64) expect( node, inputs=[ boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ], outputs=[selected_indices], name="test_nonmaxsuppression_suppress_by_IOU_and_scores", ) @staticmethod def export_nonmaxsuppression_flipped_coordinates() -> None: node = onnx.helper.make_node( "NonMaxSuppression", inputs=[ "boxes", "scores", "max_output_boxes_per_class", "iou_threshold", "score_threshold", ], outputs=["selected_indices"], ) boxes = np.array( [ [ [1.0, 1.0, 0.0, 0.0], [0.0, 0.1, 1.0, 1.1], [0.0, 0.9, 1.0, -0.1], [0.0, 10.0, 1.0, 11.0], [1.0, 10.1, 0.0, 11.1], [1.0, 101.0, 0.0, 100.0], ] ] ).astype(np.float32) scores = np.array([[[0.9, 0.75, 0.6, 0.95, 0.5, 0.3]]]).astype(np.float32) max_output_boxes_per_class = np.array([3]).astype(np.int64) iou_threshold = np.array([0.5]).astype(np.float32) score_threshold = np.array([0.0]).astype(np.float32) selected_indices = np.array([[0, 0, 3], [0, 0, 0], [0, 0, 5]]).astype(np.int64) expect( node, inputs=[ boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ], outputs=[selected_indices], name="test_nonmaxsuppression_flipped_coordinates", ) @staticmethod def export_nonmaxsuppression_limit_output_size() -> None: node = onnx.helper.make_node( "NonMaxSuppression", inputs=[ "boxes", "scores", "max_output_boxes_per_class", "iou_threshold", "score_threshold", ], outputs=["selected_indices"], ) boxes = np.array( [ [ [0.0, 0.0, 1.0, 1.0], [0.0, 0.1, 1.0, 1.1], [0.0, -0.1, 1.0, 0.9], [0.0, 10.0, 1.0, 11.0], [0.0, 10.1, 1.0, 11.1], [0.0, 100.0, 1.0, 101.0], ] ] ).astype(np.float32) scores = np.array([[[0.9, 0.75, 0.6, 0.95, 0.5, 0.3]]]).astype(np.float32) max_output_boxes_per_class = np.array([2]).astype(np.int64) iou_threshold = np.array([0.5]).astype(np.float32) score_threshold = np.array([0.0]).astype(np.float32) selected_indices = np.array([[0, 0, 3], [0, 0, 0]]).astype(np.int64) expect( node, inputs=[ boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ], outputs=[selected_indices], name="test_nonmaxsuppression_limit_output_size", ) @staticmethod def export_nonmaxsuppression_single_box() -> None: node = onnx.helper.make_node( "NonMaxSuppression", inputs=[ "boxes", "scores", "max_output_boxes_per_class", "iou_threshold", "score_threshold", ], outputs=["selected_indices"], ) boxes = np.array([[[0.0, 0.0, 1.0, 1.0]]]).astype(np.float32) scores = np.array([[[0.9]]]).astype(np.float32) max_output_boxes_per_class = np.array([3]).astype(np.int64) iou_threshold = np.array([0.5]).astype(np.float32) score_threshold = np.array([0.0]).astype(np.float32) selected_indices = np.array([[0, 0, 0]]).astype(np.int64) expect( node, inputs=[ boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ], outputs=[selected_indices], name="test_nonmaxsuppression_single_box", ) @staticmethod def export_nonmaxsuppression_identical_boxes() -> None: node = onnx.helper.make_node( "NonMaxSuppression", inputs=[ "boxes", "scores", "max_output_boxes_per_class", "iou_threshold", "score_threshold", ], outputs=["selected_indices"], ) boxes = np.array( [ [ [0.0, 0.0, 1.0, 1.0], [0.0, 0.0, 1.0, 1.0], [0.0, 0.0, 1.0, 1.0], [0.0, 0.0, 1.0, 1.0], [0.0, 0.0, 1.0, 1.0], [0.0, 0.0, 1.0, 1.0], [0.0, 0.0, 1.0, 1.0], [0.0, 0.0, 1.0, 1.0], [0.0, 0.0, 1.0, 1.0], [0.0, 0.0, 1.0, 1.0], ] ] ).astype(np.float32) scores = np.array( [[[0.9, 0.9, 0.9, 0.9, 0.9, 0.9, 0.9, 0.9, 0.9, 0.9]]] ).astype(np.float32) max_output_boxes_per_class = np.array([3]).astype(np.int64) iou_threshold = np.array([0.5]).astype(np.float32) score_threshold = np.array([0.0]).astype(np.float32) selected_indices = np.array([[0, 0, 0]]).astype(np.int64) expect( node, inputs=[ boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ], outputs=[selected_indices], name="test_nonmaxsuppression_identical_boxes", ) @staticmethod def export_nonmaxsuppression_center_point_box_format() -> None: node = onnx.helper.make_node( "NonMaxSuppression", inputs=[ "boxes", "scores", "max_output_boxes_per_class", "iou_threshold", "score_threshold", ], outputs=["selected_indices"], center_point_box=1, ) boxes = np.array( [ [ [0.5, 0.5, 1.0, 1.0], [0.5, 0.6, 1.0, 1.0], [0.5, 0.4, 1.0, 1.0], [0.5, 10.5, 1.0, 1.0], [0.5, 10.6, 1.0, 1.0], [0.5, 100.5, 1.0, 1.0], ] ] ).astype(np.float32) scores = np.array([[[0.9, 0.75, 0.6, 0.95, 0.5, 0.3]]]).astype(np.float32) max_output_boxes_per_class = np.array([3]).astype(np.int64) iou_threshold = np.array([0.5]).astype(np.float32) score_threshold = np.array([0.0]).astype(np.float32) selected_indices = np.array([[0, 0, 3], [0, 0, 0], [0, 0, 5]]).astype(np.int64) expect( node, inputs=[ boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ], outputs=[selected_indices], name="test_nonmaxsuppression_center_point_box_format", ) @staticmethod def export_nonmaxsuppression_two_classes() -> None: node = onnx.helper.make_node( "NonMaxSuppression", inputs=[ "boxes", "scores", "max_output_boxes_per_class", "iou_threshold", "score_threshold", ], outputs=["selected_indices"], ) boxes = np.array( [ [ [0.0, 0.0, 1.0, 1.0], [0.0, 0.1, 1.0, 1.1], [0.0, -0.1, 1.0, 0.9], [0.0, 10.0, 1.0, 11.0], [0.0, 10.1, 1.0, 11.1], [0.0, 100.0, 1.0, 101.0], ] ] ).astype(np.float32) scores = np.array( [[[0.9, 0.75, 0.6, 0.95, 0.5, 0.3], [0.9, 0.75, 0.6, 0.95, 0.5, 0.3]]] ).astype(np.float32) max_output_boxes_per_class = np.array([2]).astype(np.int64) iou_threshold = np.array([0.5]).astype(np.float32) score_threshold = np.array([0.0]).astype(np.float32) selected_indices = np.array( [[0, 0, 3], [0, 0, 0], [0, 1, 3], [0, 1, 0]] ).astype(np.int64) expect( node, inputs=[ boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ], outputs=[selected_indices], name="test_nonmaxsuppression_two_classes", ) @staticmethod def export_nonmaxsuppression_two_batches() -> None: node = onnx.helper.make_node( "NonMaxSuppression", inputs=[ "boxes", "scores", "max_output_boxes_per_class", "iou_threshold", "score_threshold", ], outputs=["selected_indices"], ) boxes = np.array( [ [ [0.0, 0.0, 1.0, 1.0], [0.0, 0.1, 1.0, 1.1], [0.0, -0.1, 1.0, 0.9], [0.0, 10.0, 1.0, 11.0], [0.0, 10.1, 1.0, 11.1], [0.0, 100.0, 1.0, 101.0], ], [ [0.0, 0.0, 1.0, 1.0], [0.0, 0.1, 1.0, 1.1], [0.0, -0.1, 1.0, 0.9], [0.0, 10.0, 1.0, 11.0], [0.0, 10.1, 1.0, 11.1], [0.0, 100.0, 1.0, 101.0], ], ] ).astype(np.float32) scores = np.array( [[[0.9, 0.75, 0.6, 0.95, 0.5, 0.3]], [[0.9, 0.75, 0.6, 0.95, 0.5, 0.3]]] ).astype(np.float32) max_output_boxes_per_class = np.array([2]).astype(np.int64) iou_threshold = np.array([0.5]).astype(np.float32) score_threshold = np.array([0.0]).astype(np.float32) selected_indices = np.array( [[0, 0, 3], [0, 0, 0], [1, 0, 3], [1, 0, 0]] ).astype(np.int64) expect( node, inputs=[ boxes, scores, max_output_boxes_per_class, iou_threshold, score_threshold, ], outputs=[selected_indices], name="test_nonmaxsuppression_two_batches", )
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58,788
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/dropout.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx import helper from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect def dropout(X, drop_probability=0.5, seed=0, training_mode=False, return_mask=False): # type: ignore if drop_probability == 0 or training_mode is False: if return_mask is True: return X, np.ones(X.shape, dtype=bool) else: return X np.random.seed(seed) mask = np.random.uniform(0, 1.0, X.shape) >= drop_probability scale = 1 / (1 - drop_probability) if return_mask: return mask * X * scale, mask.astype(bool) return mask * X * scale class Dropout(Base): # Inferencing tests. @staticmethod def export_default() -> None: seed = np.int64(0) node = onnx.helper.make_node("Dropout", inputs=["x"], outputs=["y"], seed=seed) x = np.random.randn(3, 4, 5).astype(np.float32) y = dropout(x) expect(node, inputs=[x], outputs=[y], name="test_dropout_default") @staticmethod def export_default_ratio() -> None: seed = np.int64(0) node = onnx.helper.make_node( "Dropout", inputs=["x", "r"], outputs=["y"], seed=seed ) r = np.float32(0.1) x = np.random.randn(3, 4, 5).astype(np.float32) y = dropout(x, r) expect(node, inputs=[x, r], outputs=[y], name="test_dropout_default_ratio") @staticmethod def export_default_mask() -> None: seed = np.int64(0) node = onnx.helper.make_node( "Dropout", inputs=["x"], outputs=["y", "z"], seed=seed ) x = np.random.randn(3, 4, 5).astype(np.float32) y, z = dropout(x, return_mask=True) expect(node, inputs=[x], outputs=[y, z], name="test_dropout_default_mask") @staticmethod def export_default_mask_ratio() -> None: seed = np.int64(0) node = onnx.helper.make_node( "Dropout", inputs=["x", "r"], outputs=["y", "z"], seed=seed ) r = np.float32(0.1) x = np.random.randn(3, 4, 5).astype(np.float32) y, z = dropout(x, r, return_mask=True) expect( node, inputs=[x, r], outputs=[y, z], name="test_dropout_default_mask_ratio" ) # Training tests. @staticmethod def export_training_default() -> None: seed = np.int64(0) node = onnx.helper.make_node( "Dropout", inputs=["x", "r", "t"], outputs=["y"], seed=seed ) x = np.random.randn(3, 4, 5).astype(np.float32) r = np.float32(0.5) t = np.bool_(True) y = dropout(x, r, training_mode=t) expect( node, inputs=[x, r, t], outputs=[y], name="test_training_dropout_default" ) @staticmethod def export_training_default_ratio_mask() -> None: seed = np.int64(0) node = onnx.helper.make_node( "Dropout", inputs=["x", "r", "t"], outputs=["y", "z"], seed=seed ) x = np.random.randn(3, 4, 5).astype(np.float32) r = np.float32(0.5) t = np.bool_(True) y, z = dropout(x, r, training_mode=t, return_mask=True) expect( node, inputs=[x, r, t], outputs=[y, z], name="test_training_dropout_default_mask", ) @staticmethod def export_training() -> None: seed = np.int64(0) node = onnx.helper.make_node( "Dropout", inputs=["x", "r", "t"], outputs=["y"], seed=seed ) x = np.random.randn(3, 4, 5).astype(np.float32) r = np.float32(0.75) t = np.bool_(True) y = dropout(x, r, training_mode=t) expect(node, inputs=[x, r, t], outputs=[y], name="test_training_dropout") @staticmethod def export_training_ratio_mask() -> None: seed = np.int64(0) node = onnx.helper.make_node( "Dropout", inputs=["x", "r", "t"], outputs=["y", "z"], seed=seed ) x = np.random.randn(3, 4, 5).astype(np.float32) r = np.float32(0.75) t = np.bool_(True) y, z = dropout(x, r, training_mode=t, return_mask=True) expect( node, inputs=[x, r, t], outputs=[y, z], name="test_training_dropout_mask" ) @staticmethod def export_training_default_zero_ratio() -> None: seed = np.int64(0) node = onnx.helper.make_node( "Dropout", inputs=["x", "r", "t"], outputs=["y"], seed=seed ) x = np.random.randn(3, 4, 5).astype(np.float32) r = np.float32(0.0) t = np.bool_(True) y = dropout(x, r, training_mode=t) expect( node, inputs=[x, r, t], outputs=[y], name="test_training_dropout_zero_ratio" ) @staticmethod def export_training_default_zero_ratio_mask() -> None: seed = np.int64(0) node = onnx.helper.make_node( "Dropout", inputs=["x", "r", "t"], outputs=["y", "z"], seed=seed ) x = np.random.randn(3, 4, 5).astype(np.float32) r = np.float32(0.0) t = np.bool_(True) y, z = dropout(x, r, training_mode=t, return_mask=True) expect( node, inputs=[x, r, t], outputs=[y, z], name="test_training_dropout_zero_ratio_mask", ) # Old dropout tests @staticmethod def export_default_old() -> None: node = onnx.helper.make_node( "Dropout", inputs=["x"], outputs=["y"], ) x = np.array([-1, 0, 1]).astype(np.float32) y = x expect( node, inputs=[x], outputs=[y], name="test_dropout_default_old", opset_imports=[helper.make_opsetid("", 11)], ) @staticmethod def export_random_old() -> None: node = onnx.helper.make_node( "Dropout", inputs=["x"], outputs=["y"], ratio=0.2, ) x = np.random.randn(3, 4, 5).astype(np.float32) y = x expect( node, inputs=[x], outputs=[y], name="test_dropout_random_old", opset_imports=[helper.make_opsetid("", 11)], )
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58,789
onnx/onnx
refs/heads/main
/onnx/test/model_inference_test.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 import typing import unittest import onnx import onnx.parser import onnx.shape_inference class TestModelInference(unittest.TestCase): def _check(self, model_text: str, *expected: int): """Check that the model inference infers the expected types for outputs. Restricted to the simple case of tensor types, so expected types specify only the element type (ints corresponding to onnx.TensorProto.DataType). """ model = onnx.parser.parse_model(model_text) inferred = onnx.shape_inference.infer_shapes(model) outputs = inferred.graph.output for output, expected_elem_type in zip(outputs, expected): inferred_type = output.type self.assertTrue(inferred_type.HasField("tensor_type")) tensor_type = inferred_type.tensor_type self.assertTrue(tensor_type.HasField("elem_type")) elem_type = tensor_type.elem_type self.assertEqual(elem_type, expected_elem_type) def test_mi_basic(self): """Test that model inference infers model output type.""" model = """ < ir_version: 7, opset_import: [ "" : 17] > agraph (float[N] x) => (y) { y = Cast<to=6> (x) } """ self._check(model, onnx.TensorProto.INT32) def test_mi_function(self): """Test use of functions.""" model = """ < ir_version: 7, opset_import: [ "" : 17, "local" : 1] > agraph (float[N] x) => (y) { y = local.cast(x) } < opset_import: [ "" : 17 ], domain: "local" > cast (x) => (y) { y = Cast<to=6> (x) } """ self._check(model, onnx.TensorProto.INT32) def test_mi_function_attr(self): """Test use of functions with attribute parameters.""" model = """ < ir_version: 7, opset_import: [ "" : 17, "local" : 1] > agraph (float[N] x) => (y) { y = local.cast<target=6>(x) } < opset_import: [ "" : 17 ], domain: "local" > cast<target>(x) => (y) { y = Cast<to:int = @target> (x) } """ self._check(model, onnx.TensorProto.INT32) def test_mi_function_subgraph_attr(self): """Test use of function attributes within subgraphs.""" model = """ < ir_version: 7, opset_import: [ "" : 17, "local" : 1] > agraph (float[N] x, bool flag) => (y) { y = local.cast<target=6>(x, flag) } < opset_import: [ "" : 17 ], domain: "local" > cast<target>(x, flag) => (y) { y = If (flag) < then_branch = g1 () => (z_then) { z_then = Cast<to:int = @target> (x) }, else_branch = g2 () => (z_else) { z_else = Cast<to:int = @target> (x) } > } """ self._check(model, onnx.TensorProto.INT32) def test_mi_function_multiple_calls(self): """Test use of multiple invocation of functions.""" model = """ < ir_version: 7, opset_import: [ "" : 17, "local" : 1] > agraph (float[N] x, bool flag) => (y, z) { y = local.cast<target=6>(x, flag) z = local.cast<target=7>(x, flag) } < opset_import: [ "" : 17 ], domain: "local" > cast<target>(x, flag) => (y) { y = If (flag) < then_branch = g1 () => (z_then) { z_then = Cast<to:int = @target> (x) }, else_branch = g2 () => (z_else) { z_else = Cast<to:int = @target> (x) } > } """ self._check(model, onnx.TensorProto.INT32, onnx.TensorProto.INT64) def _check_shape(self, model_text: str, *expected: typing.Sequence[int]): """Check that the model inference infers the expected shapes for outputs. Restricted to the simple case of tensor type outputs with completely known shapes. """ model = onnx.parser.parse_model(model_text) inferred = onnx.shape_inference.infer_shapes(model, True, True, True) outputs = inferred.graph.output for output, expected_shape in zip(outputs, expected): inferred_type = output.type self.assertTrue(inferred_type.HasField("tensor_type")) tensor_type = inferred_type.tensor_type self.assertTrue(tensor_type.HasField("shape")) inferred_shape = tensor_type.shape self.assertEqual(len(inferred_shape.dim), len(expected_shape)) for inferred_dim, expected_dim in zip(inferred_shape.dim, expected_shape): self.assertTrue(inferred_dim.HasField("dim_value")) self.assertEqual(inferred_dim.dim_value, expected_dim) def test_mi_constant(self): model = """ < ir_version: 7, opset_import: [ "" : 17] > mymodel (float[4, 8, 16] x) => (y) { shape = Constant<value_ints=[8,4,16]>() y = Reshape(x, shape) } """ self._check_shape(model, [8, 4, 16]) def test_mi_constant_2(self): model = """ < ir_version: 7, opset_import: [ "" : 17] > mymodel (float[4, 8, 16] x) => (y) { shape = Constant<value_ints=[4,2,8]>() two = Constant<value_int=2>() shape2 = Mul(shape, two) y = Reshape(x, shape2) } """ self._check_shape(model, [8, 4, 16]) def test_mi_constant_in_function(self): model = """ < ir_version: 7, opset_import: [ "" : 17, "local" : 1] > main (float x) => (y, z) { y, z = local.expand(x) } < opset_import: [ "" : 17 ], domain: "local" > expand (x) => (y, z) { shape1 = Constant<value = int64[2] {4,4}>() shape2 = Constant<value = int64[3] {8,8,8}>() z = Expand (x, shape2) y = Expand (x, shape1) } """ self._check_shape(model, [4, 4], [8, 8, 8]) def test_mi_function_default_attr(self): """Test use of default values of function attributes.""" model = """ <ir_version: 7, opset_import: [ "" : 17, "local" : 1]> agraph (float[N] x) => (y, z) { y = local.cast <target=6> (x) # casts to INT32 type (encoding value 6) z = local.cast (x) # uses default-attribute value of 1 (FLOAT type) } <opset_import: [ "" : 17 ], domain: "local"> cast <target: int = 1> (x) => (y) { y = Cast <to:int = @target> (x) } """ self._check(model, onnx.TensorProto.INT32, onnx.TensorProto.FLOAT) if __name__ == "__main__": unittest.main()
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58,790
onnx/onnx
refs/heads/main
/onnx/test/inliner_test.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 import unittest from onnx import inliner, parser class InlinerTest(unittest.TestCase): def test_basic(self): model = parser.parse_model( """ <ir_version: 8, opset_import: [ "" : 17, "local" : 1 ]> agraph (float[N] X) => (float[N] Y) { Y = local.foo (X) } <opset_import: [ "" : 17, "local" : 1 ], domain: "local"> foo (x) => (y) { temp = Add(x, x) y = local.bar(temp) } <opset_import: [ "" : 17 ], domain: "local"> bar (x) => (y) { y = Mul (x, x) } """ ) inlined = inliner.inline_local_functions(model) inlined_nodes = inlined.graph.node # function-call should be replaced by Add, followed by Mul self.assertEqual(len(inlined_nodes), 2) self.assertEqual(inlined_nodes[0].op_type, "Add") self.assertEqual(inlined_nodes[1].op_type, "Mul") if __name__ == "__main__": unittest.main()
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58,791
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/argmin.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect def argmin_use_numpy(data: np.ndarray, axis: int = 0, keepdims: int = 1) -> np.ndarray: result = np.argmin(data, axis=axis) if keepdims == 1: result = np.expand_dims(result, axis) return result.astype(np.int64) def argmin_use_numpy_select_last_index( data: np.ndarray, axis: int = 0, keepdims: int = True ) -> np.ndarray: data = np.flip(data, axis) result = np.argmin(data, axis=axis) result = data.shape[axis] - result - 1 if keepdims: result = np.expand_dims(result, axis) return result.astype(np.int64) class ArgMin(Base): @staticmethod def export_no_keepdims() -> None: data = np.array([[2, 1], [3, 10]], dtype=np.float32) axis = 1 keepdims = 0 node = onnx.helper.make_node( "ArgMin", inputs=["data"], outputs=["result"], axis=axis, keepdims=keepdims ) # The content of result is : [[1, 0]] result = argmin_use_numpy(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_no_keepdims_example", ) data = np.random.uniform(-10, 10, [2, 3, 4]).astype(np.float32) # result's shape: [2, 4] result = argmin_use_numpy(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_no_keepdims_random" ) @staticmethod def export_keepdims() -> None: data = np.array([[2, 1], [3, 10]], dtype=np.float32) axis = 1 keepdims = 1 node = onnx.helper.make_node( "ArgMin", inputs=["data"], outputs=["result"], axis=axis, keepdims=keepdims ) # The content of result is : [[1], [0]] result = argmin_use_numpy(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_keepdims_example" ) data = np.random.uniform(-10, 10, [2, 3, 4]).astype(np.float32) # result's shape: [2, 1, 4] result = argmin_use_numpy(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_keepdims_random" ) @staticmethod def export_default_axes_keepdims() -> None: data = np.array([[2, 1], [3, 10]], dtype=np.float32) keepdims = 1 node = onnx.helper.make_node( "ArgMin", inputs=["data"], outputs=["result"], keepdims=keepdims ) # The content of result is : [[0], [0]] result = argmin_use_numpy(data, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_default_axis_example", ) data = np.random.uniform(-10, 10, [2, 3, 4]).astype(np.float32) # result's shape: [1, 3, 4] result = argmin_use_numpy(data, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_default_axis_random", ) @staticmethod def export_negative_axis_keepdims() -> None: data = np.array([[2, 1], [3, 10]], dtype=np.float32) axis = -1 keepdims = 1 node = onnx.helper.make_node( "ArgMin", inputs=["data"], outputs=["result"], axis=axis, keepdims=keepdims ) # The content of result is : [[1], [0]] result = argmin_use_numpy(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_negative_axis_keepdims_example", ) data = np.random.uniform(-10, 10, [2, 3, 4]).astype(np.float32) # result's shape: [2, 3, 1] result = argmin_use_numpy(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_negative_axis_keepdims_random", ) @staticmethod def export_no_keepdims_select_last_index() -> None: data = np.array([[2, 2], [3, 10]], dtype=np.float32) axis = 1 keepdims = 0 node = onnx.helper.make_node( "ArgMin", inputs=["data"], outputs=["result"], axis=axis, keepdims=keepdims, select_last_index=True, ) # result: [[1, 0]] result = argmin_use_numpy_select_last_index(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_no_keepdims_example_select_last_index", ) data = np.random.uniform(-10, 10, [2, 3, 4]).astype(np.float32) # result's shape: [2, 4] result = argmin_use_numpy_select_last_index(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_no_keepdims_random_select_last_index", ) @staticmethod def export_keepdims_select_last_index() -> None: data = np.array([[2, 2], [3, 10]], dtype=np.float32) axis = 1 keepdims = 1 node = onnx.helper.make_node( "ArgMin", inputs=["data"], outputs=["result"], axis=axis, keepdims=keepdims, select_last_index=True, ) # result: [[1], [0]] result = argmin_use_numpy_select_last_index(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_keepdims_example_select_last_index", ) data = np.random.uniform(-10, 10, [2, 3, 4]).astype(np.float32) # result's shape: [2, 1, 4] result = argmin_use_numpy_select_last_index(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_keepdims_random_select_last_index", ) @staticmethod def export_default_axes_keepdims_select_last_index() -> None: data = np.array([[2, 2], [3, 10]], dtype=np.float32) keepdims = 1 node = onnx.helper.make_node( "ArgMin", inputs=["data"], outputs=["result"], keepdims=keepdims, select_last_index=True, ) # result: [[0, 0]] result = argmin_use_numpy_select_last_index(data, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_default_axis_example_select_last_index", ) data = np.random.uniform(-10, 10, [2, 3, 4]).astype(np.float32) # result's shape: [1, 3, 4] result = argmin_use_numpy_select_last_index(data, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_default_axis_random_select_last_index", ) @staticmethod def export_negative_axis_keepdims_select_last_index() -> None: data = np.array([[2, 2], [3, 10]], dtype=np.float32) axis = -1 keepdims = 1 node = onnx.helper.make_node( "ArgMin", inputs=["data"], outputs=["result"], axis=axis, keepdims=keepdims, select_last_index=True, ) # result: [[1], [0]] result = argmin_use_numpy_select_last_index(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_negative_axis_keepdims_example_select_last_index", ) data = np.random.uniform(-10, 10, [2, 3, 4]).astype(np.float32) # result's shape: [2, 3, 1] result = argmin_use_numpy_select_last_index(data, axis=axis, keepdims=keepdims) expect( node, inputs=[data], outputs=[result], name="test_argmin_negative_axis_keepdims_random_select_last_index", )
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58,792
onnx/onnx
refs/heads/main
/onnx/reference/op_run.py
# SPDX-License-Identifier: Apache-2.0 # pylint: disable=C0415,R0912 from __future__ import annotations import abc from typing import Any, ClassVar, Iterable import numpy as np from onnx import TensorProto from onnx.defs import get_all_schemas_with_history, get_schema, onnx_opset_version from onnx.helper import make_node, make_tensor_type_proto, np_dtype_to_tensor_dtype from onnx.numpy_helper import to_array from onnx.onnx_pb import AttributeProto, GraphProto, NodeProto, TypeProto from onnx.reference.custom_element_types import ( bfloat16, float8e4m3fn, float8e4m3fnuz, float8e5m2, float8e5m2fnuz, ) def _split_class_name(name): # type: ignore if "_" in name: prefix, vers = name.rsplit("_", maxsplit=1) try: v = int(vers) except ValueError: return name, None return prefix, v return name, None class RuntimeTypeError(RuntimeError): """ Raised when a type of a variable is unexpected. """ class RuntimeContextError(RuntimeError): """ Raised when the context is missing but an context dependent implementation is defined for an operator. """ class RuntimeImplementationError(NotImplementedError): """ Raised when no implementation was found for an operator. """ class DefaultNone: """ Default value for parameters when the parameter is not set but the operator has a default behavior for it. """ class RefAttrName: """ Implements a link between a parameter of a function and an attribute in node. :param name: name of the input """ def __init__(self, name: str): self.name = name def __repr__(self) -> str: "usual" return f"{self.__class__.__name__}({self.name!r})" def _build_schemas() -> dict[str, type]: res: dict[str, type] = {} for schema in get_all_schemas_with_history(): # Multiple version can coexist. The last one is kept. if schema.name in res: if schema.domain != res[schema.name].domain: # type: ignore raise NotImplementedError( f"This function assumes every operator has a unique name {schema.name!r} " # type: ignore f"even accross multiple domains {schema.domain!r} and {res[schema.name].domain!r}." # type: ignore ) if schema.since_version > res[schema.name].since_version: # type: ignore # We keep the most recent one. res[schema.name] = schema # type: ignore else: res[schema.name] = schema # type: ignore res[schema.name + "_" + str(schema.since_version)] = schema # type: ignore return res _schemas = _build_schemas() class OnnxType: def __init__(self, type_proto: TypeProto): if not isinstance(type_proto, TypeProto): raise TypeError(f"type_proto {type(type_proto)} must be of type TypeProto.") self.type_proto = type_proto def __repr__(self) -> str: return f"OnnxType({self.type_proto!r})" class SparseTensor: """ Simple representation of a sparse tensor. It is based on numpy but does not require scipy. """ def __init__( self, values: np.ndarray, indices: np.ndarray, shape: tuple[int] ) -> None: self.values = values self.indices = indices self.shape = shape @property def dtype(self) -> Any: return self.values.dtype def to_sparse_tensor(att: AttributeProto) -> SparseTensor: """ Hosts a sparse tensor. """ shape = tuple(d for d in att.dims) # type: ignore[attr-defined] return SparseTensor(to_array(att.values), to_array(att.indices), shape) # type: ignore def to_array_extended(tensor: TensorProto) -> np.ndarray: """ Similar to :func:`to_array` but deals with bfloat16, float8e4m3fn, float8e4m3fnuz, float8e5m2, float8e5m2fnuz. """ elem_type = tensor.data_type if elem_type == TensorProto.BFLOAT16: data = tensor.int32_data shape = tuple(tensor.dims) y = np.empty(shape, dtype=bfloat16).ravel() for i, d in enumerate(data): y[i] = d return y.reshape(shape) if elem_type in ( TensorProto.FLOAT8E4M3FN, TensorProto.FLOAT8E4M3FNUZ, TensorProto.FLOAT8E5M2, TensorProto.FLOAT8E5M2FNUZ, ): m = { TensorProto.FLOAT8E4M3FN: float8e4m3fn, TensorProto.FLOAT8E4M3FNUZ: float8e4m3fnuz, TensorProto.FLOAT8E5M2: float8e5m2, TensorProto.FLOAT8E5M2FNUZ: float8e5m2fnuz, } if tensor.HasField("raw_data"): data = tensor.raw_data # type: ignore[assignment] else: data = tensor.int32_data shape = tuple(tensor.dims) y = np.empty(shape, dtype=m[elem_type]).ravel() # type: ignore[index] for i, d in enumerate(data): y[i] = d return y.reshape(shape) return to_array(tensor) class Graph: __slots__ = ("g",) def __init__(self, g: GraphProto) -> None: self.g = g class OpRun(abc.ABC): """ Ancestor to all operators in this subfolder. :param onnx_node: `onnx` node :param run_params: additional parameters such as `verbose`, `opsets` (it can be more than one if the operator has a subgraph), `log` for a logging function :param schema: operator schema """ op_domain = "" _attribute_conversion_functions: ClassVar[dict[Any, Any]] = { AttributeProto.FLOAT: lambda att: np.float32(att.f), AttributeProto.FLOATS: lambda att: [np.float32(f) for f in att.floats], AttributeProto.GRAPH: lambda att: Graph(att.g), AttributeProto.GRAPHS: lambda att: [Graph(g) for g in att.graphs], AttributeProto.INT: lambda att: int(att.i), AttributeProto.INTS: lambda att: [int(i) for i in att.ints], AttributeProto.SPARSE_TENSOR: lambda att: to_sparse_tensor(att.sparse_tensor), AttributeProto.SPARSE_TENSORS: lambda att: [ to_sparse_tensor(t) for t in att.sparse_tensors ], AttributeProto.STRING: lambda att: att.s.decode("utf-8"), AttributeProto.STRINGS: lambda att: [s.decode("utf-8") for s in att.strings], AttributeProto.TENSOR: lambda att: to_array_extended(att.t), AttributeProto.TENSORS: lambda att: [to_array_extended(t) for t in att.tensors], AttributeProto.TYPE_PROTO: lambda att: OnnxType(att.tp), AttributeProto.TYPE_PROTOS: lambda att: [OnnxType(t) for t in att.type_protos], } def __init__( self, onnx_node: NodeProto, run_params: dict[str, Any], schema: Any = None ): if not isinstance(run_params, dict): raise TypeError(f"run_params must be a dictionary not {type(run_params)}.") for att in ["opsets", "new_ops"]: if att not in run_params: raise RuntimeError( f"Attribute {att!r} must be in run_params, only " f"{sorted(run_params)} was found." ) if "log" not in run_params: raise KeyError("run_params must contains key 'log'.") self.onnx_node = onnx_node self.run_params = run_params if schema is None: if hasattr(self.__class__, "op_schema"): self._schema = self.__class__.op_schema elif self.__class__.__name__ in _schemas: self._schema = _schemas[self.__class__.__name__] elif onnx_node.op_type in _schemas: self._schema = _schemas[onnx_node.op_type] else: self._schema = None # type: ignore else: self._schema = schema self.has_subgraph = False self._load_attributes() def _log(self, pattern, *args): # type: ignore self.run_params["log"](pattern, *args) def _extract_attribute_value( self, att: AttributeProto, ref_att: AttributeProto | None = None ) -> Any: """ Converts an attribute value into a python value. """ if att.type == AttributeProto.GRAPH: from onnx.reference.reference_evaluator import ( ReferenceEvaluator, # type: ignore ) new_ops = self.run_params.get("new_ops", None) return ReferenceEvaluator( att.g, opsets=self.run_params["opsets"], verbose=max(0, self.run_params.get("verbose", 0) - 2), new_ops=None if new_ops is None else list(new_ops.values()), ) if att.type in OpRun._attribute_conversion_functions: return OpRun._attribute_conversion_functions[att.type](att) # type: ignore if ref_att is None: raise AttributeError( f"Unable to convert attribute {att.name!r} type {att.type!r} " f"from node type {self.onnx_node.op_type!r}, " f"domain {self.onnx_node.domain!r}\n{att}." ) raise AttributeError( f"Unable to convert default value for {ref_att.name!r} type {att.type!r} " f"from node type {self.onnx_node.op_type!r}, " f"domain {self.onnx_node.domain!r}\n{att}\n{ref_att}." ) @staticmethod def _evaluate_subgraph(context, value, attributes): return value.run(None, context or {}, attributes=attributes) def _load_attributes(self) -> None: "Checks and loads attributes." self.has_linked_attribute = False added_attributes = [] for att in self.onnx_node.attribute: name = att.name if att.ref_attr_name: value = RefAttrName(att.ref_attr_name) self.has_linked_attribute = True else: value = self._extract_attribute_value(att) setattr(self, name, value) added_attributes.append(name) if att.type == AttributeProto.GRAPH: self.has_subgraph = True self.has_linked_attribute |= value.has_linked_attribute # type: ignore setattr( self, f"_run_{att.name}", lambda context, value=value, attributes=None: OpRun._evaluate_subgraph( context, value, attributes ), ) if self._schema and self.onnx_node.op_type not in {"Constant"}: for k, v in self._schema.attributes.items(): # type: ignore if not hasattr(self, k): if getattr(v, "required", True): raise RuntimeError( f"Attribute {k!r} is expected based on ONNX specifications " f"for node {self.onnx_node.op_type!r}." ) if hasattr(v, "default_value"): if v.default_value.type == 0: # default value is undefined, it depends on the inputs value = None # type: ignore else: value = self._extract_attribute_value(v.default_value, v) setattr(self, k, value) added_attributes.append(k) self.attributes_names_ = set(added_attributes) @staticmethod def implicit_inputs(graph: GraphProto) -> list[str]: """ Returns all varibles not registered as inputs and not produced by an node inside the graph. This inputs are part of the context existing in the graph calling this one. """ if not isinstance(graph, GraphProto): raise TypeError(f"Unexpected type {type(graph)!r}.") local = set() known = set() for init in graph.initializer: known.add(init.name) for sparse_init in graph.sparse_initializer: known.add(sparse_init.name) # type: ignore for inp in graph.input: known.add(inp.name) for node in graph.node: for o in node.output: known.add(o) for i in node.input: if i not in known: local.add(i) return list(local) @property def input(self) -> Iterable[str]: "Returns node attribute `input`." return self.onnx_node.input # type: ignore @property def output(self) -> Iterable[str]: "Returns node attribute `output`." return self.onnx_node.output # type: ignore @property def op_type(self) -> str: "Returns node attribute `op_type`." return self.onnx_node.op_type # type: ignore @property def domain(self) -> str: "Returns node attribute `domain`." return self.onnx_node.domain # type: ignore def need_context(self) -> bool: """ Tells the runtime if this node needs the context (all the results produced so far) as it may silently access one of them (operator Scan, If, Loop). The default answer is `False`. """ return False def __str__(self) -> str: atts = [self.__class__.__name__ + "(", f" op_type={self.onnx_node.op_type}"] for k, v in sorted(self.__dict__.items()): if k in {"desc", "onnx_node"}: continue if "a" <= k[0] <= "z" and k[-1] != "_": atts.append(f" {k}={v},") atts.append(")") return "\n".join(atts) @abc.abstractmethod def _run(self, *args, **kwargs): # type: ignore """ Should be overwritten. :param args: operator inputs :param kwargs: optional inputs and overriden attributes, an attribute may be overridden if it belongs to a function, in this case, the same instance of OpRun can be called with different values of the same attribute. :return: outputs """ raise NotImplementedError( f"Method '_run' must be overwritten for operator {self.__class__.__name__!r}." ) def run(self, *args, linked_attributes=None, context=None): # type: ignore """ Calls method ``_run``, catches exceptions, displays a longer error message. :param args: inputs :param linked_attributes: used if this has an attriute linked to the attribute of the function it belongs to :param context: if this node is part of the subgraph, `context` is a dictionary with the values this node may use :return: tuple of results """ if self.need_context(): if context is None: raise RuntimeError( f"This node if type {type(self)} needs context to be filled." ) elif context is not None: raise RuntimeError( f"This node if type {type(self)} does not need any contextbut one is given." ) if self.has_linked_attribute and linked_attributes is None: raise ValueError( f"This node {type(self)} has linked attributes but None are given in parameter 'linked_attributes'." ) if not self.has_linked_attribute and linked_attributes is not None: raise ValueError( f"This node {type(self)} has no linked attribute but some are given in parameter " f"'linked_attributes' {set(linked_attributes)}." ) overridden_attributes = {} if self.has_linked_attribute: if linked_attributes is None: raise AttributeError( f"One attribute is linked but no linked value is provided, " f"in class {type(self)}." ) for att in self.attributes_names_: v = getattr(self, att) if isinstance(v, RefAttrName): if v.name not in linked_attributes: raise ValueError( f"Unable to find a value for linked attribute {att!r} in {linked_attributes!r} " f"in node {type(self)}." ) overridden_attributes[att] = linked_attributes[v.name] self._log("-- begin %s.run(%d inputs)", self.__class__.__name__, len(args)) kwargs = {} for att in self.attributes_names_: if att in overridden_attributes: continue if not hasattr(self, att): raise NameError( f"Attribute {att!r} is missing in operator {self.__class__.__name__!r}." ) kwargs[att] = getattr(self, att) if self.has_subgraph: if self.has_linked_attribute and not linked_attributes: raise RuntimeError( f"A subgraph has linked attribute but none was given to {type(self)}." ) kwargs["attributes"] = linked_attributes if context is not None: kwargs["context"] = context try: if overridden_attributes: res = self._run(*args, **overridden_attributes, **kwargs) else: res = self._run(*args, **kwargs) except (TypeError, AttributeError) as e: raise TypeError( f"Issues with types {[type(_) for _ in args]} and attributes " f"{sorted(kwargs)} and linked attributes={sorted(overridden_attributes)} " f"(operator {self.__class__.__name__!r})." ) from e self._log("-- done %s.run -> %d outputs", self.__class__.__name__, len(res)) if not isinstance(res, tuple): raise TypeError( f"Method '_run' of class {self.__class__.__name__!r} does not return a tuple but {type(res)}." ) if len(res) == 0: raise ValueError( f"Method '_run' of class {self.__class__.__name__!r} does not return any result." ) if any(isinstance(t, tuple) for t in res): dtypes = [type(t) for t in res] raise TypeError( f"One of the results returned by method '_run' of class {self.__class__.__name__!r} " f"is a tuple, this is no onnx correponding type (Map, List, Tensor, SparseTensor). " f"All returned types: {dtypes!r}." ) return res @classmethod def infer_name(cls): name = cls.__name__ if "_" not in name: return name, onnx_opset_version() name, vers = name.rsplit("_", 1) try: i_vers = int(vers) except ValueError: return cls.__name__, onnx_opset_version() return name, i_vers @classmethod def make_node( cls, n_inputs: int | None = None, n_outputs: int | None = None, **kwargs: Any, ) -> NodeProto: # type: ignore """ Creates an ONNX node for this class based on the given information. :param n_inputs: number of inputs (default is defined by the operator schema) :param n_outputs: number of outputs (default is defined by the operator schema) :param verbose: verbosity :param kwargs: node attributes :return: NodeProto Method :meth:`eval <onnx.reference.op_run.OpRun.eval>` creates an onnx node returned by method :meth:`make_node <onnx.reference.op_run.OpRun.make_node>`. .. exec_code:: import numpy as np from onnx.reference.ops._op_list import Celu onnx_node = Celu.make_node(alpha=0.5) print(onnx_node) """ op_type, opset = cls.infer_name() domain = cls.op_domain schema = None if n_inputs is None: if schema is None: schema = get_schema(op_type, opset, domain) n_inputs = schema.min_input if n_outputs is None: if schema is None: schema = get_schema(op_type, opset, domain) n_outputs = schema.min_output names_in = [f"x{i}" for i in range(n_inputs)] names_out = [f"y{i}" for i in range(n_outputs)] node = make_node(op_type, names_in, names_out, **kwargs) return node @classmethod def create( cls, n_inputs: int | None = None, n_outputs: int | None = None, verbose: int = 0, **kwargs: Any, ) -> Any: """ Instantiates this class based on the given information. :param n_inputs: number of inputs (default is defined by the operator schema) :param n_outputs: number of outputs (default is defined by the operator schema) :param verbose: verbosity :param kwargs: node attributes :return: NodeProto """ def log_function(pattern: str, *args: Any) -> None: if verbose > 1: print(pattern % tuple(args)) node = cls.make_node(n_inputs, n_outputs, **kwargs) run_params = { "verbose": verbose, "log": log_function, "new_ops": None, "opsets": {"": onnx_opset_version()}, } cl = cls(node, run_params) return cl @classmethod def eval( cls, *args: list[Any], n_outputs: int | None = None, verbose: int = 0, **kwargs: Any, ) -> Any: # type: ignore """ Evaluates this operator. :param args: inputs :param n_outputs: number of outputs (default is defined by the operator schema) :param verbose: verbosity :param kwargs: node attributes :return: NodeProto """ inst = cls.create(len(args), n_outputs=n_outputs, verbose=verbose, **kwargs) res = inst.run(*args) if len(res) == 1: return res[0] return res class OpRunExpand(OpRun): """ Class any operator to avoid must inherit from. """ def __init__( self, onnx_node: NodeProto, log_function: Any, impl: Any = None ): # pylint: disable=super-init-not-called raise RuntimeError( f"The reference implementation must not use this node ({type(self)})." ) def _run(self, *inputs, **kwargs): raise RuntimeError( f"The reference implementation must not use this node ({type(self)})." ) class OpFunction(OpRun): """ Runs a custom function. """ def __init__( self, onnx_node: NodeProto, log_function: Any, impl: Any = None, attributes: dict[str, Any] | None = None, ): if impl is None: raise RuntimeError( f"impl cannot be None for node type {onnx_node.op_type!r} " f"from domain {onnx_node.domain!r}." ) OpRun.__init__(self, onnx_node, log_function) self.impl_ = impl # The function implementation is the same whenever the function is called # but the attributes may be different at every call. self.attributes_ = { name: getattr(self, name) for name in getattr(self.impl_, "attributes_", attributes) # type: ignore[union-attr] } def _run(self, *inputs, **kwargs): # type: ignore # pylint: disable=W0221 return self._run_impl(self.impl_, *inputs, **kwargs) def _run_impl(self, impl, *inputs, **kwargs): # type: ignore # pylint: disable=W0221 if len(impl.input_names) != len(inputs): raise RuntimeError( f"Mismatch lengths between the number of inputs {len(inputs)} " f"and the expected number of inputs {len(impl.inputs)} " f"for node {self.op_type!r} from domain {self.domain!r}." ) feeds = dict(zip(impl.input_names, inputs)) attributes = self.attributes_.copy() attributes.update(kwargs) results = impl.run(None, feeds, attributes=attributes) if len(impl.output_names) != len(results): raise RuntimeError( f"Mismatch lengths between the number of outputs {len(results)} " f"and the expected number of outputs {len(impl.output_names)} " f"for node {self.op_type!r} from domain {self.domain!r}." ) return tuple(results) class OpFunctionContextDependant(OpFunction): """ The function can be instantiated but only at execution time. An instance of OpFunction is created everytime to node is executed. This is needed when the schema of an operator defines a context dependant function. """ def __init__(self, onnx_node: NodeProto, log_function: Any, parent: Any = None): OpFunction.__init__(self, onnx_node, log_function, impl=self, attributes={}) self.parent = parent version = parent.opsets[onnx_node.domain] self.schema_ = get_schema(onnx_node.op_type, version, onnx_node.domain) def _run(self, *inputs, **kwargs): # Input types are known. They are used to properly # created the body for this operator. types = [] for t in inputs: try: ttype = np_dtype_to_tensor_dtype(t.dtype) except KeyError as e: if t.dtype == float8e4m3fn: ttype = TensorProto.FLOAT8E4M3FN # type: ignore[attr-defined] elif t.dtype == float8e4m3fnuz: ttype = TensorProto.FLOAT8E4M3FNUZ # type: ignore[attr-defined] elif t.dtype == float8e5m2: ttype = TensorProto.FLOAT8E5M2 # type: ignore[attr-defined] elif t.dtype == float8e5m2fnuz: ttype = TensorProto.FLOAT8E5M2FNUZ # type: ignore[attr-defined] elif t.dtype == bfloat16: ttype = TensorProto.BLOFAT16 # type: ignore[attr-defined] else: raise e types.append(make_tensor_type_proto(ttype, t.shape)) cl = self.parent._load_impl( # pylint: disable=protected-access self.onnx_node, types ) inst = cl(self.onnx_node, self.run_params) return self._run_impl(inst.impl_, *inputs, **kwargs)
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58,793
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_max_unpool.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=C0200,R0913,R0914,W0221 import numpy as np from onnx.reference.op_run import OpRun class MaxUnpool(OpRun): def _run(self, X, indices, output_shape=None, kernel_shape=None, pads=None, strides=None): # type: ignore pooling_dims = len(X.shape) - 2 if pooling_dims > 3: raise NotImplementedError( f"Unsupported pooling size {pooling_dims} for operator MaxUnpool." ) kernel_shape = kernel_shape or self.kernel_shape # type: ignore pads = pads or self.pads # type: ignore strides = strides or self.strides # type: ignore if strides is None: strides = [1 for d in kernel_shape] if pads is None: pads = [0 for d in range(len(kernel_shape) * 2)] inferred_shape = np.empty((len(X.shape),), dtype=np.int64) inferred_shape[0] = X.shape[0] inferred_shape[1] = X.shape[1] for dim in range(0, len(kernel_shape)): inferred_shape[dim + 2] = ( (X.shape[dim + 2] - 1) * strides[dim] - (pads[dim] + pads[len(kernel_shape) + dim]) + kernel_shape[dim] ) if output_shape is None: shape = inferred_shape else: shape = output_shape total_elements = np.prod(X.shape) Y = np.zeros((np.prod(inferred_shape),), dtype=X.dtype) I_data = indices.flatten() X_data = X.flatten() for cur_elem in range(total_elements): Y[I_data[cur_elem]] = X_data[cur_elem] Y = Y.reshape(tuple(inferred_shape)) res = np.zeros(shape, dtype=Y.dtype) slices = tuple(slice(0, i) for i in inferred_shape) res[slices] = Y return (res,)
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58,794
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/reversesequence.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class ReverseSequence(Base): @staticmethod def export_reversesequence_time() -> None: node = onnx.helper.make_node( "ReverseSequence", inputs=["x", "sequence_lens"], outputs=["y"], time_axis=0, batch_axis=1, ) x = np.array( [ [0.0, 4.0, 8.0, 12.0], [1.0, 5.0, 9.0, 13.0], [2.0, 6.0, 10.0, 14.0], [3.0, 7.0, 11.0, 15.0], ], dtype=np.float32, ) sequence_lens = np.array([4, 3, 2, 1], dtype=np.int64) y = np.array( [ [3.0, 6.0, 9.0, 12.0], [2.0, 5.0, 8.0, 13.0], [1.0, 4.0, 10.0, 14.0], [0.0, 7.0, 11.0, 15.0], ], dtype=np.float32, ) expect( node, inputs=[x, sequence_lens], outputs=[y], name="test_reversesequence_time", ) @staticmethod def export_reversesequence_batch() -> None: node = onnx.helper.make_node( "ReverseSequence", inputs=["x", "sequence_lens"], outputs=["y"], time_axis=1, batch_axis=0, ) x = np.array( [ [0.0, 1.0, 2.0, 3.0], [4.0, 5.0, 6.0, 7.0], [8.0, 9.0, 10.0, 11.0], [12.0, 13.0, 14.0, 15.0], ], dtype=np.float32, ) sequence_lens = np.array([1, 2, 3, 4], dtype=np.int64) y = np.array( [ [0.0, 1.0, 2.0, 3.0], [5.0, 4.0, 6.0, 7.0], [10.0, 9.0, 8.0, 11.0], [15.0, 14.0, 13.0, 12.0], ], dtype=np.float32, ) expect( node, inputs=[x, sequence_lens], outputs=[y], name="test_reversesequence_batch", )
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58,795
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/celu.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Celu(Base): @staticmethod def export() -> None: alpha = 2.0 node = onnx.helper.make_node( "Celu", inputs=["X"], outputs=["Y"], alpha=alpha, ) input_data = np.array( [ [ [[0.8439683], [0.5665144], [0.05836735]], [[0.02916367], [0.12964272], [0.5060197]], [[0.79538304], [0.9411346], [0.9546573]], ], [ [[0.17730942], [0.46192095], [0.26480448]], [[0.6746842], [0.01665257], [0.62473077]], [[0.9240844], [0.9722341], [0.11965699]], ], [ [[0.41356155], [0.9129373], [0.59330076]], [[0.81929934], [0.7862604], [0.11799799]], [[0.69248444], [0.54119414], [0.07513223]], ], ], dtype=np.float32, ) # Calculate expected output data positive_input = np.maximum(0, input_data) negative_input = np.minimum(0, alpha * (np.exp(input_data / alpha) - 1)) expected_output = positive_input + negative_input expect(node, inputs=[input_data], outputs=[expected_output], name="test_celu")
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58,796
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_where.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.op_run import OpRun class Where(OpRun): def _run(self, condition, x, y): # type: ignore if ( x.dtype != y.dtype and x.dtype not in (object,) and x.dtype.type is not np.str_ and y.dtype.type is not np.str_ ): raise RuntimeError( f"x and y should share the same dtype {x.dtype} != {y.dtype}" ) return (np.where(condition, x, y).astype(x.dtype),)
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58,797
onnx/onnx
refs/heads/main
/onnx/reference/ops/aionnx_preview_training/op_momentum.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,R0914,W0221 from onnx.reference.ops.aionnx_preview_training._op_run_training import OpRunTraining def _apply_momentum(r, t, x, g, v, norm_coefficient, alpha, beta): # type: ignore # Add gradient of regularization term. g_regularized = norm_coefficient * x + g # Coefficient of gradient should be 1 at the first iteration. beta_adjusted = beta if t > 0 else 1 # Update momentum. v_new = alpha * v + beta_adjusted * g_regularized # Apply SG with momentum update rule. x_new = x - r * v_new return x_new, v_new def _apply_nesterov(r, t, x, g, v, norm_coefficient, alpha, beta): # type: ignore # Add gradient of regularization term. g_regularized = norm_coefficient * x + g # Coefficient of gradient should be 1 at the first iteration. beta_adjusted = beta if t > 0 else 1 # Update momentum. v_new = alpha * v + beta_adjusted * g_regularized # Apply Nesterov with momentum update rule. x_new = x - r * (g_regularized + alpha * v_new) return x_new, v_new class Momentum(OpRunTraining): def _run(self, *data, alpha=None, beta=None, mode=None, norm_coefficient=None): # type: ignore if len(data) == 5: r, t, x, g, v = data return self._run1( # type: ignore r, t, x, g, v, norm_coefficient=norm_coefficient, alpha=alpha, beta=beta, mode=mode, ) n = (len(data) - 2) // 3 xs = [] vs = [] for i in range(0, n): a, b = self._run1( # type: ignore *data[:2], data[2 + i], data[2 + n + i], data[2 + n * 2 + i], norm_coefficient=norm_coefficient, alpha=alpha, beta=beta, mode=mode, ) xs.append(a) vs.append(b) return tuple(xs + vs) def _run1(self, r, t, x, g, v, mode="standard", norm_coefficient=None, alpha=None, beta=None): # type: ignore if mode == "standard": x_new, v_new = _apply_momentum(r, t, x, g, v, norm_coefficient, alpha, beta) else: x_new, v_new = _apply_nesterov(r, t, x, g, v, norm_coefficient, alpha, beta) return x_new, v_new
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58,798
onnx/onnx
refs/heads/main
/onnx/backend/test/case/test_case.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 from dataclasses import dataclass from typing import Optional, Sequence, Tuple import numpy as np import onnx @dataclass class TestCase: name: str model_name: str url: Optional[str] model_dir: Optional[str] model: Optional[onnx.ModelProto] data_sets: Optional[Sequence[Tuple[Sequence[np.ndarray], Sequence[np.ndarray]]]] kind: str rtol: float atol: float # Tell PyTest this isn't a real test. __test__: bool = False
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58,799
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_erf.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 from math import erf import numpy as np from onnx.reference.ops._op import OpRunUnaryNum class Erf(OpRunUnaryNum): def __init__(self, onnx_node, run_params): # type: ignore OpRunUnaryNum.__init__(self, onnx_node, run_params) self._erf = np.vectorize(erf) def _run(self, x): # type: ignore return (self._erf(x).astype(x.dtype),)
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58,800
onnx/onnx
refs/heads/main
/onnx/test/function_inference_test.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 import unittest from typing import Sequence from shape_inference_test import TestShapeInferenceHelper import onnx import onnx.helper import onnx.parser import onnx.shape_inference from onnx import AttributeProto, TypeProto float_type_ = onnx.helper.make_tensor_type_proto(1, None) uint8_type_ = onnx.helper.make_tensor_type_proto(2, None) int8_type_ = onnx.helper.make_tensor_type_proto(3, None) int32_type_ = onnx.helper.make_tensor_type_proto(6, None) float16_type_ = onnx.helper.make_tensor_type_proto(10, None) no_type_ = TypeProto() class TestFunctionInference(TestShapeInferenceHelper): def _check( self, function_text: str, input_types: Sequence[TypeProto], attributes: Sequence[AttributeProto], expected_output_types: Sequence[TypeProto], ): function = onnx.parser.parse_function(function_text) result = onnx.shape_inference.infer_function_output_types( function, input_types, attributes ) self.assertEqual(len(expected_output_types), len(result)) for expected, actual in zip(expected_output_types, result): self._compare_value_infos(expected, actual) def _check_fails( self, function_text: str, input_types: Sequence[TypeProto], attributes: Sequence[AttributeProto], ): function = onnx.parser.parse_function(function_text) def invoke_inference(): onnx.shape_inference.infer_function_output_types( function, input_types, attributes ) self.assertRaises(onnx.shape_inference.InferenceError, invoke_inference) def test_fi_basic(self): code = """ <opset_import: [ "" : 18 ], domain: "local"> f (y, z) => (w) { x = Add(y, z) w = Mul(x, y) } """ self._check(code, [float_type_, float_type_], [], [float_type_]) self._check(code, [int32_type_, int32_type_], [], [int32_type_]) self._check_fails(code, [float_type_, int32_type_], []) def test_fi_attribute(self): code = """ <opset_import: [ "" : 18 ], domain: "local"> CastTo <dtype> (x) => (y) { y = Cast <to : int = @dtype> (x) } """ dtype_6 = onnx.helper.make_attribute("dtype", 6) self._check(code, [float_type_], [dtype_6], [int32_type_]) dtype_10 = onnx.helper.make_attribute("dtype", 10) self._check(code, [float_type_], [dtype_10], [float16_type_]) def test_fi_optional_input(self): code = """ <opset_import: [ "" : 18 ], domain: "local"> DoReduce (x, axes) => (y) { y = ReduceMax (x, axes) } """ # We can omit the type for a missing trailing optional parameter self._check(code, [float_type_], [], [float_type_]) # Or, we can pass in a default-value of TypeProto() for a missing optional parameter self._check(code, [float_type_, no_type_], [], [float_type_]) code = """ <opset_import: [ "" : 18 ], domain: "local"> Quantize (x, scale, zero_point) => (y) { y = QuantizeLinear (x, scale, zero_point) } """ # If the optional third parameter is specified, it determines the output type. self._check(code, [float_type_, float_type_, int8_type_], [], [int8_type_]) self._check(code, [float_type_, float_type_, uint8_type_], [], [uint8_type_]) # If the optional third parameter is omitted, the output type is uint8 (default). self._check(code, [float_type_, float_type_, no_type_], [], [uint8_type_]) code = """ <opset_import: [ "" : 18 ], domain: "local"> DoClip (x, min, max) => (y) { y = Clip (x, min, max) } """ # A test-case with a non-trailing missing optional parameter self._check(code, [float_type_, no_type_, float_type_], [], [float_type_]) # A failing test-case with a non-trailing missing optional parameter self._check_fails(code, [float_type_, no_type_, int8_type_], []) if __name__ == "__main__": unittest.main()
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58,801
onnx/onnx
refs/heads/main
/onnx/reference/ops/aionnxml/op_dict_vectorizer.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,R0914,W0221 import numpy as np from onnx.reference.ops.aionnxml._op_run_aionnxml import OpRunAiOnnxMl class DictVectorizer(OpRunAiOnnxMl): def _run(self, x, int64_vocabulary=None, string_vocabulary=None): # type: ignore if isinstance(x, (np.ndarray, list)): dict_labels = {} if int64_vocabulary: for i, v in enumerate(int64_vocabulary): dict_labels[v] = i else: for i, v in enumerate(string_vocabulary): dict_labels[v] = i if not dict_labels: raise RuntimeError( "int64_vocabulary and string_vocabulary cannot be both empty." ) values_list = [] rows_list = [] cols_list = [] for i, row in enumerate(x): for k, v in row.items(): values_list.append(v) rows_list.append(i) cols_list.append(dict_labels[k]) values = np.array(values_list) rows = np.array(rows_list) cols = np.array(cols_list) res = np.zeros((len(x), len(dict_labels)), dtype=values.dtype) # type: ignore for r, c, v in zip(rows, cols, values): res[r, c] = v return (res,) # return ( # coo_matrix( # (values, (rows, cols)), shape=(len(x), len(dict_labels)) # ).todense(), # ) if isinstance(x, dict): keys = int64_vocabulary or string_vocabulary result = [] for k in keys: result.append(x.get(k, 0)) return (np.array(result),) raise TypeError(f"x must be iterable not {type(x)}.")
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58,802
onnx/onnx
refs/heads/main
/onnx/inliner.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import onnx import onnx.onnx_cpp2py_export.inliner as C # noqa: N812 def inline_local_functions( model: onnx.ModelProto, convert_version: bool = False ) -> onnx.ModelProto: """Inline model-local functions in given model. Arguments: model: an ONNX ModelProto convert_version: if true, try to apply automatic version-conversion to functions requiring a different (ONNX) opset version from the model. Returns: ModelProto with all calls to model-local functions inlined (recursively) """ result = C.inline_local_functions(model.SerializeToString(), convert_version) inlined_model = onnx.ModelProto() inlined_model.ParseFromString(result) return inlined_model
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refs/heads/main
/onnx/test/reference_evaluator_ml_test.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # type: ignore # pylint: disable=C3001,C0302,C0415,R0904,R0913,R0914,R0915,W0221,W0707 import unittest from functools import wraps from os import getenv import numpy as np # type: ignore from numpy.testing import assert_allclose # type: ignore from onnx import ONNX_ML, TensorProto, TypeProto, ValueInfoProto from onnx.checker import check_model from onnx.defs import onnx_opset_version from onnx.helper import ( make_graph, make_model_gen_version, make_node, make_opsetid, make_tensor_value_info, ) from onnx.reference import ReferenceEvaluator # TODO (https://github.com/microsoft/onnxruntime/issues/14932): Get max supported version from onnxruntime directly # For now, bump the version in CIs whenever there is a new onnxruntime release ORT_MAX_IR_SUPPORTED_VERSION = int(getenv("ORT_MAX_IR_SUPPORTED_VERSION", "8")) ORT_MAX_ONNX_OPSET_SUPPORTED_VERSION = int( getenv("ORT_MAX_ONNX_OPSET_SUPPORTED_VERSION", "18") ) ORT_MAX_ML_OPSET_SUPPORTED_VERSION = int( getenv("ORT_MAX_ML_OPSET_SUPPORTED_VERSION", "3") ) TARGET_OPSET = onnx_opset_version() - 2 TARGET_OPSET_ML = 3 OPSETS = [make_opsetid("", TARGET_OPSET), make_opsetid("ai.onnx.ml", TARGET_OPSET_ML)] def has_onnxruntime(): try: import onnxruntime # pylint: disable=W0611 del onnxruntime return True except ImportError: return False def skip_if_no_onnxruntime(fn): @wraps(fn) def wrapper(*args, **kwargs): if not has_onnxruntime(): raise unittest.SkipTest("onnxruntime not installed") fn(*args, **kwargs) return wrapper class TestReferenceEvaluatorAiOnnxMl(unittest.TestCase): @staticmethod def _check_ort(onx, feeds, atol=0, rtol=0, equal=False, rev=False): if not has_onnxruntime(): return from onnxruntime import InferenceSession onnx_domain_opset = ORT_MAX_ONNX_OPSET_SUPPORTED_VERSION ml_domain_opset = ORT_MAX_ML_OPSET_SUPPORTED_VERSION for opset in onx.opset_import: if opset.domain in ("", "ai.onnx"): onnx_domain_opset = opset.version break for opset in onx.opset_import: if opset.domain == "ai.onnx.ml": ml_domain_opset = opset.version break # The new IR or opset version is not supported by onnxruntime yet if ( onx.ir_version > ORT_MAX_IR_SUPPORTED_VERSION or onnx_domain_opset > ORT_MAX_ONNX_OPSET_SUPPORTED_VERSION or ml_domain_opset > ORT_MAX_ML_OPSET_SUPPORTED_VERSION ): return ort = InferenceSession( onx.SerializeToString(), providers=["CPUExecutionProvider"] ) sess = ReferenceEvaluator(onx) expected = ort.run(None, feeds) got = sess.run(None, feeds) if len(expected) != len(got): raise AssertionError( f"onnxruntime returns a different number of output " f"{len(expected)} != {len(sess)} (ReferenceEvaluator)." ) look = zip(reversed(expected), reversed(got)) if rev else zip(expected, got) for i, (e, g) in enumerate(look): if e.shape != g.shape: raise AssertionError( f"Unexpected shape {g.shape} for output {i} " f"(expecting {e.shape})\n{e!r}\n---\n{g!r}." ) if equal: if e.tolist() != g.tolist(): raise AssertionError( f"Discrepancies for output {i}" f"\nexpected=\n{e}\n!=\nresults=\n{g}" ) else: assert_allclose( actual=g, desired=e, atol=atol, rtol=rtol, err_msg=f"Discrepancies for output {i} expected[0]={e.ravel()[0]}.", ) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_binarizer(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node("Binarizer", ["X"], ["Y"], threshold=5.5, domain="ai.onnx.ml") graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.arange(12).reshape((3, 4)).astype(np.float32) expected = np.array( [[0, 0, 0, 0], [0, 0, 1, 1], [1, 1, 1, 1]], dtype=np.float32 ) self._check_ort(onx, {"X": x}) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] assert_allclose(expected, got) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_scaler(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "Scaler", ["X"], ["Y"], scale=[0.5], offset=[-4.5], domain="ai.onnx.ml" ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.arange(12).reshape((3, 4)).astype(np.float32) expected = np.array( [ [2.25, 2.75, 3.25, 3.75], [4.25, 4.75, 5.25, 5.75], [6.25, 6.75, 7.25, 7.75], ], dtype=np.float32, ) self._check_ort(onx, {"X": x}) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] assert_allclose(expected, got) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_array_feature_extractor(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) A = make_tensor_value_info("A", TensorProto.INT64, [None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "ArrayFeatureExtractor", ["X", "A"], ["Y"], domain="ai.onnx.ml" ) graph = make_graph([node1], "ml", [X, A], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.arange(12).reshape((3, 4)).astype(np.float32) expected = np.array([[0, 4, 8]], dtype=np.float32).T feeds = {"X": x, "A": np.array([0], dtype=np.int64)} self._check_ort(onx, feeds) sess = ReferenceEvaluator(onx) got = sess.run(None, feeds)[0] assert_allclose(expected, got) expected = np.array([[0, 4, 8], [1, 5, 9]], dtype=np.float32).T feeds = {"X": x, "A": np.array([0, 1], dtype=np.int64)} self._check_ort(onx, feeds) sess = ReferenceEvaluator(onx) got = sess.run(None, feeds)[0] assert_allclose(expected, got) expected = np.array( [[0, 4, 8], [1, 5, 9], [0, 4, 8], [1, 5, 9], [0, 4, 8], [1, 5, 9]], dtype=np.float32, ).T feeds = {"X": x, "A": np.array([0, 1, 0, 1, 0, 1], dtype=np.int64)} self._check_ort(onx, feeds) sess = ReferenceEvaluator(onx) got = sess.run(None, feeds)[0] assert_allclose(expected, got) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_normalizer(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) x = np.arange(12).reshape((3, 4)).astype(np.float32) expected = { "MAX": x / x.max(axis=1, keepdims=1), "L1": x / np.abs(x).sum(axis=1, keepdims=1), "L2": x / (x**2).sum(axis=1, keepdims=1) ** 0.5, } for norm, value in expected.items(): with self.subTest(norm=norm): node1 = make_node( "Normalizer", ["X"], ["Y"], norm=norm, domain="ai.onnx.ml" ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) feeds = {"X": x} self._check_ort(onx, feeds, atol=1e-6) sess = ReferenceEvaluator(onx) got = sess.run(None, feeds)[0] assert_allclose(value, got, atol=1e-6) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_feature_vectorizer(self): X = [ make_tensor_value_info("X0", TensorProto.FLOAT, [None, None]), make_tensor_value_info("X1", TensorProto.FLOAT, [None, None]), ] Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) x = [ np.arange(9).reshape((3, 3)).astype(np.float32), np.arange(9).reshape((3, 3)).astype(np.float32) + 0.5, ] expected = { (1,): np.array([[0], [3], [6]], dtype=np.float32), (2,): np.array([[0, 1], [3, 4], [6, 7]], dtype=np.float32), (4,): np.array( [[0, 1, 2, 0], [3, 4, 5, 0], [6, 7, 8, 0]], dtype=np.float32 ), (1, 1): np.array([[0, 0.5], [3, 3.5], [6, 6.5]], dtype=np.float32), (0, 1): np.array([[0.5], [3.5], [6.5]], dtype=np.float32), } for inputdimensions, value in expected.items(): att = ( list(inputdimensions) if isinstance(inputdimensions, tuple) else inputdimensions ) with self.subTest(inputdimensions=att): node1 = make_node( "FeatureVectorizer", [f"X{i}" for i in range(len(att))], ["Y"], inputdimensions=att, domain="ai.onnx.ml", ) graph = make_graph([node1], "ml", X[: len(att)], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) feeds = {f"X{i}": v for i, v in enumerate(x[: len(att)])} self._check_ort(onx, feeds, atol=1e-6) sess = ReferenceEvaluator(onx) got = sess.run(None, feeds)[0] assert_allclose(value, got, atol=1e-6) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_imputer_float(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "Imputer", ["X"], ["Y"], domain="ai.onnx.ml", imputed_value_floats=np.array([0], dtype=np.float32), replaced_value_float=np.nan, ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.array([[0, 1, np.nan, 3]], dtype=np.float32).T expected = np.array([[0, 1, 0, 3]], dtype=np.float32).T self._check_ort(onx, {"X": x}) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] assert_allclose(expected, got) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_imputer_float_2d(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "Imputer", ["X"], ["Y"], domain="ai.onnx.ml", imputed_value_floats=np.array([0, 0.1], dtype=np.float32), replaced_value_float=np.nan, ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.array([[0, 1, np.nan, 3], [0, 1, np.nan, 3]], dtype=np.float32).T expected = np.array([[0, 1, 0, 3], [0, 1, 0.1, 3]], dtype=np.float32).T self._check_ort(onx, {"X": x}) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] assert_allclose(expected, got) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_imputer_int(self): X = make_tensor_value_info("X", TensorProto.INT64, [None, None]) Y = make_tensor_value_info("Y", TensorProto.INT64, [None, None]) node1 = make_node( "Imputer", ["X"], ["Y"], domain="ai.onnx.ml", imputed_value_int64s=np.array([0], dtype=np.int64), replaced_value_int64=-1, ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.array([[0, 1, -1, 3]], dtype=np.int64).T expected = np.array([[0, 1, 0, 3]], dtype=np.int64).T self._check_ort(onx, {"X": x}) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] assert_allclose(expected, got) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_label_encoder_float_int(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.INT64, [None, None]) node1 = make_node( "LabelEncoder", ["X"], ["Y"], domain="ai.onnx.ml", default_int64=-5, keys_floats=[4.0, 1.0, 2.0, 3.0], values_int64s=[0, 1, 2, 3], ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.array([[0, 1, np.nan, 3, 4]], dtype=np.float32).T expected = np.array([[-5, 1, -5, 3, 0]], dtype=np.int64).T self._check_ort(onx, {"X": x}) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] assert_allclose(expected, got) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_label_encoder_int_string(self): X = make_tensor_value_info("X", TensorProto.INT64, [None, None]) Y = make_tensor_value_info("Y", TensorProto.STRING, [None, None]) node1 = make_node( "LabelEncoder", ["X"], ["Y"], domain="ai.onnx.ml", default_string="NONE", keys_int64s=[1, 2, 3, 4], values_strings=["a", "b", "cc", "ddd"], ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.array([[0, 1, 3, 4]], dtype=np.int64).T expected = np.array([["NONE"], ["a"], ["cc"], ["ddd"]]) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] self.assertEqual(expected.tolist(), got.tolist()) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_dict_vectorizer(self): value_type = TypeProto() value_type.tensor_type.elem_type = TensorProto.INT64 onnx_type = TypeProto() onnx_type.map_type.key_type = TensorProto.STRING onnx_type.map_type.value_type.CopyFrom(value_type) value_info = ValueInfoProto() value_info.name = "X" value_info.type.CopyFrom(onnx_type) X = value_info Y = make_tensor_value_info("Y", TensorProto.INT64, [None, None]) node1 = make_node( "DictVectorizer", ["X"], ["Y"], domain="ai.onnx.ml", string_vocabulary=["a", "c", "b", "z"], ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = {"a": np.array(4, dtype=np.int64), "c": np.array(8, dtype=np.int64)} expected = np.array([4, 8, 0, 0], dtype=np.int64) # Unexpected input data type. Actual: ((map(string,tensor(float)))) , expected: ((map(string,tensor(int64)))) # self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] self.assertEqual(expected.tolist(), got.tolist()) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_one_hot_encoder_int(self): X = make_tensor_value_info("X", TensorProto.INT64, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None, None]) node1 = make_node( "OneHotEncoder", ["X"], ["Y"], domain="ai.onnx.ml", zeros=1, cats_int64s=[1, 2, 3], ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.array([[5, 1, 3], [2, 1, 3]], dtype=np.int64) expected = np.array( [[[0, 0, 0], [1, 0, 0], [0, 0, 1]], [[0, 1, 0], [1, 0, 0], [0, 0, 1]]], dtype=np.float32, ) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] self.assertEqual(expected.tolist(), got.tolist()) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_one_hot_encoder_string(self): X = make_tensor_value_info("X", TensorProto.STRING, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None, None]) node1 = make_node( "OneHotEncoder", ["X"], ["Y"], domain="ai.onnx.ml", zeros=1, cats_strings=["c1", "c2", "c3"], ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.array([["c5", "c1", "c3"], ["c2", "c1", "c3"]]) expected = np.array( [[[0, 0, 0], [1, 0, 0], [0, 0, 1]], [[0, 1, 0], [1, 0, 0], [0, 0, 1]]], dtype=np.float32, ) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] self.assertEqual(expected.tolist(), got.tolist()) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_one_hot_encoder_zeros(self): X = make_tensor_value_info("X", TensorProto.INT64, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None, None]) node1 = make_node( "OneHotEncoder", ["X"], ["Y"], domain="ai.onnx.ml", zeros=0, cats_int64s=[1, 2, 3], ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.array([[2, 1, 3], [2, 1, 3]], dtype=np.int64) expected = np.array( [[[0, 1, 0], [1, 0, 0], [0, 0, 1]], [[0, 1, 0], [1, 0, 0], [0, 0, 1]]], dtype=np.float32, ) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x})[0] self.assertEqual(expected.tolist(), got.tolist()) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_linear_regressor(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "LinearRegressor", ["X"], ["Y"], domain="ai.onnx.ml", coefficients=[0.3, -0.77], intercepts=[0.5], post_transform="NONE", targets=1, ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.arange(6).reshape((-1, 2)).astype(np.float32) expected = np.array([[-0.27], [-1.21], [-2.15]], dtype=np.float32) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected, got[0], atol=1e-6) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_linear_regressor_2(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "LinearRegressor", ["X"], ["Y"], domain="ai.onnx.ml", coefficients=[0.3, -0.77, 0.3, -0.77], intercepts=[0.5, 0.7], post_transform="NONE", targets=2, ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.arange(6).reshape((-1, 2)).astype(np.float32) expected = np.array( [[-0.27, -0.07], [-1.21, -1.01], [-2.15, -1.95]], dtype=np.float32 ) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected, got[0], atol=1e-6) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_linear_classifier_multi(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) In = make_tensor_value_info("I", TensorProto.INT64, [None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) expected_post = { "NONE": [ np.array([0, 2, 2], dtype=np.int64), np.array( [[2.41, -2.12, 0.59], [0.67, -1.14, 1.35], [-1.07, -0.16, 2.11]], dtype=np.float32, ), ], "LOGISTIC": [ np.array([0, 2, 2], dtype=np.int64), np.array( [ [0.917587, 0.107168, 0.643365], [0.661503, 0.24232, 0.79413], [0.255403, 0.460085, 0.891871], ], dtype=np.float32, ), ], "SOFTMAX": [ np.array([0, 2, 2], dtype=np.int64), np.array( [ [0.852656, 0.009192, 0.138152], [0.318722, 0.05216, 0.629118], [0.036323, 0.090237, 0.87344], ], dtype=np.float32, ), ], "SOFTMAX_ZERO": [ np.array([0, 2, 2], dtype=np.int64), np.array( [ [0.852656, 0.009192, 0.138152], [0.318722, 0.05216, 0.629118], [0.036323, 0.090237, 0.87344], ], dtype=np.float32, ), ], "PROBIT": [ np.array([1, 1, 1], dtype=np.int64), np.array( [ [-0.527324, -0.445471, -1.080504], [-0.067731, 0.316014, -0.310748], [0.377252, 1.405167, 0.295001], ], dtype=np.float32, ), ], } for post in ("SOFTMAX", "NONE", "LOGISTIC", "SOFTMAX_ZERO", "PROBIT"): if post == "PROBIT": coefficients = [0.058, 0.029, 0.09, 0.058, 0.029, 0.09] intercepts = [0.27, 0.27, 0.05] else: coefficients = [-0.58, -0.29, -0.09, 0.58, 0.29, 0.09] intercepts = [2.7, -2.7, 0.5] with self.subTest(post_transform=post): node1 = make_node( "LinearClassifier", ["X"], ["I", "Y"], domain="ai.onnx.ml", classlabels_ints=[0, 1, 2], coefficients=coefficients, intercepts=intercepts, multi_class=0, post_transform=post, ) graph = make_graph([node1], "ml", [X], [In, Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.arange(6).reshape((-1, 2)).astype(np.float32) self._check_ort(onx, {"X": x}, rev=True, atol=1e-4) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) expected = expected_post[post] assert_allclose(expected[1], got[1], atol=1e-4) assert_allclose(expected[0], got[0]) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_linear_classifier_binary(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) In = make_tensor_value_info("I", TensorProto.INT64, [None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) expected_post = { "NONE": [ np.array([1, 1], dtype=np.int64), np.array([[-9.53, 9.53], [-6.65, 6.65]], dtype=np.float32), ], "LOGISTIC": [ np.array([1, 1], dtype=np.int64), np.array( [[7.263436e-05, 9.999274e-01], [1.292350e-03, 9.987077e-01]], dtype=np.float32, ), ], "SOFTMAX": [ np.array([1, 1], dtype=np.int64), np.array( [[5.276517e-09, 1.000000e00], [1.674492e-06, 9.999983e-01]], dtype=np.float32, ), ], "SOFTMAX_ZERO": [ np.array([1, 1], dtype=np.int64), np.array( [[5.276517e-09, 1.000000e00], [1.674492e-06, 9.999983e-01]], dtype=np.float32, ), ], } x = np.arange(6).reshape((-1, 3)).astype(np.float32) for post in ("SOFTMAX", "NONE", "LOGISTIC", "SOFTMAX_ZERO"): expected = expected_post[post] with self.subTest(post_transform=post): node1 = make_node( "LinearClassifier", ["X"], ["I", "Y"], domain="ai.onnx.ml", classlabels_ints=[0, 1], coefficients=[-0.58, -0.29, -0.09], intercepts=[10.0], multi_class=0, post_transform=post, ) graph = make_graph([node1], "ml", [X], [In, Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) # onnxruntime answer seems odd. # self._check_ort(onx, {"X": x}, rev=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[1], got[1], atol=1e-6) assert_allclose(expected[0], got[0]) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_linear_classifier_unary(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) In = make_tensor_value_info("I", TensorProto.INT64, [None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) expected_post = { "NONE": [ np.array([1, 0], dtype=np.int64), np.array([[2.23], [-0.65]], dtype=np.float32), ], "LOGISTIC": [ np.array([1, 0], dtype=np.int64), np.array([[0.902911], [0.34299]], dtype=np.float32), ], "SOFTMAX": [ np.array([1, 1], dtype=np.int64), np.array([[1.0], [1.0]], dtype=np.float32), ], "SOFTMAX_ZERO": [ np.array([1, 1], dtype=np.int64), np.array([[1.0], [1.0]], dtype=np.float32), ], } x = np.arange(6).reshape((-1, 3)).astype(np.float32) for post in ("NONE", "LOGISTIC", "SOFTMAX_ZERO", "SOFTMAX"): expected = expected_post[post] with self.subTest(post_transform=post): node1 = make_node( "LinearClassifier", ["X"], ["I", "Y"], domain="ai.onnx.ml", classlabels_ints=[1], coefficients=[-0.58, -0.29, -0.09], intercepts=[2.7], multi_class=0, post_transform=post, ) graph = make_graph([node1], "ml", [X], [In, Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) # onnxruntime answer seems odd. # self._check_ort(onx, {"X": x}, rev=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[1], got[1], atol=1e-6) assert_allclose(expected[0], got[0]) @staticmethod def _get_test_tree_ensemble_regressor( aggregate_function, rule="BRANCH_LEQ", unique_targets=False ): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) if unique_targets: targets = [ 1.0, 10.0, 100.0, 1000.0, 10000.0, 100000.0, ] else: targets = [ 0.07692307978868484, 0.5, 0.5, 0.0, 0.2857142984867096, 0.5, ] node1 = make_node( "TreeEnsembleRegressor", ["X"], ["Y"], domain="ai.onnx.ml", n_targets=1, aggregate_function=aggregate_function, nodes_falsenodeids=[4, 3, 0, 0, 0, 2, 0, 4, 0, 0], nodes_featureids=[0, 2, 0, 0, 0, 0, 0, 2, 0, 0], nodes_hitrates=[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], nodes_missing_value_tracks_true=[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], nodes_modes=[ rule, rule, "LEAF", "LEAF", "LEAF", rule, "LEAF", rule, "LEAF", "LEAF", ], nodes_nodeids=[0, 1, 2, 3, 4, 0, 1, 2, 3, 4], nodes_treeids=[0, 0, 0, 0, 0, 1, 1, 1, 1, 1], nodes_truenodeids=[1, 2, 0, 0, 0, 1, 0, 3, 0, 0], nodes_values=[ 0.26645058393478394, 0.6214364767074585, 0.0, 0.0, 0.0, -0.7208403944969177, 0.0, -0.5592705607414246, 0.0, 0.0, ], post_transform="NONE", target_ids=[0, 0, 0, 0, 0, 0], target_nodeids=[2, 3, 4, 1, 3, 4], target_treeids=[0, 0, 0, 1, 1, 1], target_weights=targets, ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) return onx @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_tree_ensemble_regressor(self): x = np.arange(9).reshape((-1, 3)).astype(np.float32) / 10 - 0.5 expected_agg = { "SUM": np.array([[0.576923], [0.576923], [0.576923]], dtype=np.float32), "AVERAGE": np.array([[0.288462], [0.288462], [0.288462]], dtype=np.float32), "MIN": np.array([[0.076923], [0.076923], [0.076923]], dtype=np.float32), "MAX": np.array([[0.5], [0.5], [0.5]], dtype=np.float32), } for agg in ("SUM", "AVERAGE", "MIN", "MAX"): expected = expected_agg[agg] with self.subTest(aggregate_function=agg): onx = self._get_test_tree_ensemble_regressor(agg) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected, got[0], atol=1e-6) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_tree_ensemble_regressor_rule(self): x = np.arange(9).reshape((-1, 3)).astype(np.float32) / 10 - 0.5 expected_agg = { "BRANCH_LEQ": np.array( [[0.576923], [0.576923], [0.576923]], dtype=np.float32 ), "BRANCH_GT": np.array([[0.5], [0.5], [0.5]], dtype=np.float32), "BRANCH_LT": np.array( [[0.576923], [0.576923], [0.576923]], dtype=np.float32 ), "BRANCH_GTE": np.array([[0.5], [0.5], [0.5]], dtype=np.float32), "BRANCH_EQ": np.array([[1.0], [1.0], [1.0]], dtype=np.float32), "BRANCH_NEQ": np.array( [[0.076923], [0.076923], [0.076923]], dtype=np.float32 ), } for rule, expected in expected_agg.items(): with self.subTest(rule=rule): onx = self._get_test_tree_ensemble_regressor("SUM", rule) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected, got[0], atol=1e-6) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_tree_ensemble_regressor_2_targets(self): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "TreeEnsembleRegressor", ["X"], ["Y"], domain="ai.onnx.ml", n_targets=2, nodes_falsenodeids=[4, 3, 0, 0, 6, 0, 0, 4, 3, 0, 0, 6, 0, 0], nodes_featureids=[0, 2, 0, 0, 2, 0, 0, 0, 1, 0, 0, 2, 0, 0], nodes_hitrates=[ 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, ], nodes_missing_value_tracks_true=[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], nodes_modes=[ "BRANCH_LEQ", "BRANCH_LEQ", "LEAF", "LEAF", "BRANCH_LEQ", "LEAF", "LEAF", "BRANCH_LEQ", "BRANCH_LEQ", "LEAF", "LEAF", "BRANCH_LEQ", "LEAF", "LEAF", ], nodes_nodeids=[0, 1, 2, 3, 4, 5, 6, 0, 1, 2, 3, 4, 5, 6], nodes_treeids=[0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1], nodes_truenodeids=[1, 2, 0, 0, 5, 0, 0, 1, 2, 0, 0, 5, 0, 0], nodes_values=[ -0.3367232382297516, 1.5326381921768188, 0.0, 0.0, -0.24646544456481934, 0.0, 0.0, -0.3367232382297516, 0.6671845316886902, 0.0, 0.0, -0.24646544456481934, 0.0, 0.0, ], post_transform="NONE", target_ids=[0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0, 1], target_nodeids=[2, 2, 3, 3, 5, 5, 6, 6, 2, 2, 3, 3, 5, 5, 6, 6], target_treeids=[0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1], target_weights=[ 0.0, 2.5, 0.5, 3.0, 0.15000000596046448, 2.6500000953674316, 0.5, 3.0, 0.02777777798473835, 2.527777671813965, 0.5, 3.0, 0.20000000298023224, 2.700000047683716, 0.5, 3.0, ], ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) x = np.arange(9).reshape((-1, 3)).astype(np.float32) / 10 - 0.5 expected = np.array( [[0.027778, 5.027778], [1.0, 6.0], [1.0, 6.0]], dtype=np.float32 ) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected, got[0], atol=1e-6) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_tree_ensemble_regressor_missing(self): x = np.arange(9).reshape((-1, 3)).astype(np.float32) / 10 - 0.5 x[2, 0] = 5 x[1, :] = np.nan expected = np.array([[100001.0], [100100.0], [100100.0]], dtype=np.float32) onx = self._get_test_tree_ensemble_regressor("SUM", unique_targets=True) self._check_ort(onx, {"X": x}, equal=True) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected, got[0], atol=1e-6) self.assertIn("op_type=TreeEnsembleRegressor", str(sess.rt_nodes_[0])) @staticmethod def _get_test_svm_regressor(kernel_type, kernel_params): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "SVMRegressor", ["X"], ["Y"], domain="ai.onnx.ml", coefficients=[ 1.0, -1.0, 0.8386201858520508, -0.8386201858520508, 0.4470679759979248, -1.0, 0.5529320240020752, ], kernel_params=kernel_params, kernel_type=kernel_type, n_supports=7, post_transform="NONE", rho=[0.5460880398750305], support_vectors=[ -0.12850627303123474, 0.08915442228317261, 0.06881910562515259, -0.07938569784164429, -0.22557435929775238, -0.26520243287086487, 0.9246066212654114, -0.025557516142725945, -0.5900523662567139, 0.9735698699951172, -1.3385062217712402, 0.3393094539642334, 0.9432410001754761, -0.5228781700134277, 0.5557093620300293, 0.4191802740097046, 0.43368014693260193, -1.0569839477539062, 2.3318440914154053, 0.06202844902873039, -0.9502395987510681, ], ) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) return onx @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_svm_regressor(self): x = np.arange(9).reshape((-1, 3)).astype(np.float32) / 10 - 0.5 expected_kernel = { "LINEAR": ( [0.42438405752182007, 0.0, 3.0], np.array([[-0.468206], [0.227487], [0.92318]], dtype=np.float32), ), "POLY": ( [0.3426632285118103, 0.0, 3.0], np.array([[0.527084], [0.543578], [0.546506]], dtype=np.float32), ), "RBF": ( [0.30286383628845215, 0.0, 3.0], np.array([[0.295655], [0.477876], [0.695292]], dtype=np.float32), ), "SIGMOID": ( [0.30682486295700073, 0.0, 3.0], np.array([[0.239304], [0.448929], [0.661689]], dtype=np.float32), ), } for kernel, (params, expected) in expected_kernel.items(): with self.subTest(kernel=kernel): onx = self._get_test_svm_regressor(kernel, params) self._check_ort(onx, {"X": x}, atol=1e-6) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected, got[0], atol=1e-6) @staticmethod def _get_test_tree_ensemble_classifier_binary(post_transform): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) In = make_tensor_value_info("I", TensorProto.INT64, [None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "TreeEnsembleClassifier", ["X"], ["I", "Y"], domain="ai.onnx.ml", class_ids=[0, 0, 0, 0, 0, 0, 0], class_nodeids=[2, 3, 5, 6, 1, 3, 4], class_treeids=[0, 0, 0, 0, 1, 1, 1], class_weights=[ 0.0, 0.1764705926179886, 0.0, 0.5, 0.0, 0.0, 0.4285714328289032, ], classlabels_int64s=[0, 1], nodes_falsenodeids=[4, 3, 0, 0, 6, 0, 0, 2, 0, 4, 0, 0], nodes_featureids=[2, 2, 0, 0, 1, 0, 0, 2, 0, 0, 0, 0], nodes_hitrates=[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], nodes_missing_value_tracks_true=[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], nodes_modes=[ "BRANCH_LEQ", "BRANCH_LEQ", "LEAF", "LEAF", "BRANCH_LEQ", "LEAF", "LEAF", "BRANCH_LEQ", "LEAF", "BRANCH_LEQ", "LEAF", "LEAF", ], nodes_nodeids=[0, 1, 2, 3, 4, 5, 6, 0, 1, 2, 3, 4], nodes_treeids=[0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1], nodes_truenodeids=[1, 2, 0, 0, 5, 0, 0, 1, 0, 3, 0, 0], nodes_values=[ 0.6874135732650757, -0.3654803931713104, 0.0, 0.0, -1.926770806312561, 0.0, 0.0, -0.3654803931713104, 0.0, -2.0783839225769043, 0.0, 0.0, ], post_transform=post_transform, ) graph = make_graph([node1], "ml", [X], [In, Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) return onx @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_tree_ensemble_classifier_binary(self): x = (np.arange(9).reshape((-1, 3)) - 5).astype(np.float32) / 5 expected_post = { "NONE": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[1.0, 0.0], [0.394958, 0.605042], [0.394958, 0.605042]], dtype=np.float32, ), ), "LOGISTIC": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.5, 0.5], [0.353191, 0.646809], [0.353191, 0.646809]], dtype=np.float32, ), ), "SOFTMAX": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.5, 0.5], [0.229686, 0.770314], [0.229686, 0.770314]], dtype=np.float32, ), ), "SOFTMAX_ZERO": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.5, 0.5], [0.229686, 0.770314], [0.229686, 0.770314]], dtype=np.float32, ), ), "PROBIT": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.0, 0.0], [-0.266426, 0.266426], [-0.266426, 0.266426]], dtype=np.float32, ), ), } for post, expected in expected_post.items(): with self.subTest(post_transform=post): onx = self._get_test_tree_ensemble_classifier_binary(post) if post in ("NONE",): self._check_ort(onx, {"X": x}) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[1], got[1], atol=1e-6) assert_allclose(expected[0], got[0]) @staticmethod def _get_test_tree_ensemble_classifier_multi(post_transform): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) In = make_tensor_value_info("I", TensorProto.INT64, [None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) node1 = make_node( "TreeEnsembleClassifier", ["X"], ["I", "Y"], domain="ai.onnx.ml", class_ids=[0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2], class_nodeids=[2, 2, 2, 3, 3, 3, 4, 4, 4, 1, 1, 1, 3, 3, 3, 4, 4, 4], class_treeids=[0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1], class_weights=[ 0.46666666865348816, 0.0, 0.03333333507180214, 0.20000000298023224, 0.23999999463558197, 0.05999999865889549, 0.0, 0.5, 0.0, 0.5, 0.0, 0.0, 0.44999998807907104, 0.0, 0.05000000074505806, 0.10294117778539658, 0.19117647409439087, 0.20588235557079315, ], classlabels_int64s=[0, 1, 2], nodes_falsenodeids=[4, 3, 0, 0, 0, 2, 0, 4, 0, 0], nodes_featureids=[1, 0, 0, 0, 0, 1, 0, 0, 0, 0], nodes_hitrates=[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], nodes_missing_value_tracks_true=[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], nodes_modes=[ "BRANCH_LEQ", "BRANCH_LEQ", "LEAF", "LEAF", "LEAF", "BRANCH_LEQ", "LEAF", "BRANCH_LEQ", "LEAF", "LEAF", ], nodes_nodeids=[0, 1, 2, 3, 4, 0, 1, 2, 3, 4], nodes_treeids=[0, 0, 0, 0, 0, 1, 1, 1, 1, 1], nodes_truenodeids=[1, 2, 0, 0, 0, 1, 0, 3, 0, 0], nodes_values=[ 1.2495747804641724, -0.3050493597984314, 0.0, 0.0, 0.0, -1.6830512285232544, 0.0, -0.6751254796981812, 0.0, 0.0, ], post_transform=post_transform, ) graph = make_graph([node1], "ml", [X], [In, Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) return onx @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_tree_ensemble_classifier_multi(self): x = (np.arange(9).reshape((-1, 3)) - 5).astype(np.float32) / 5 expected_post = { "NONE": ( np.array([0, 0, 1], dtype=np.int64), np.array( [ [0.916667, 0.0, 0.083333], [0.569608, 0.191176, 0.239216], [0.302941, 0.431176, 0.265882], ], dtype=np.float32, ), ), "LOGISTIC": ( np.array([0, 0, 1], dtype=np.int64), np.array( [ [0.714362, 0.5, 0.520821], [0.638673, 0.547649, 0.55952], [0.575161, 0.606155, 0.566082], ], dtype=np.float32, ), ), "SOFTMAX": ( np.array([0, 0, 1], dtype=np.int64), np.array( [ [0.545123, 0.217967, 0.23691], [0.416047, 0.284965, 0.298988], [0.322535, 0.366664, 0.310801], ], dtype=np.float32, ), ), "SOFTMAX_ZERO": ( np.array([0, 0, 1], dtype=np.int64), np.array( [ [0.697059, 0.0, 0.302941], [0.416047, 0.284965, 0.298988], [0.322535, 0.366664, 0.310801], ], dtype=np.float32, ), ), "PROBIT": ( np.array([0, 0, 1], dtype=np.int64), np.array( [ [1.383104, 0, -1.383105], [0.175378, -0.873713, -0.708922], [-0.516003, -0.173382, -0.625385], ], dtype=np.float32, ), ), } for post, expected in expected_post.items(): with self.subTest(post_transform=post): onx = self._get_test_tree_ensemble_classifier_multi(post) if post != "PROBIT": self._check_ort(onx, {"X": x}, atol=1e-5) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[1], got[1], atol=1e-6) assert_allclose(expected[0], got[0]) @staticmethod def _get_test_svm_classifier_binary(post_transform, probability=True, linear=False): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) In = make_tensor_value_info("I", TensorProto.INT64, [None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) if linear: kwargs = { "classlabels_ints": [0, 1, 2, 3], "coefficients": [ -1.55181212e-01, 2.42698956e-01, 7.01893432e-03, 4.07614474e-01, -3.24927823e-02, 2.79897536e-04, -1.95771302e-01, -3.52437368e-01, -2.15973096e-02, -4.38190277e-01, 4.56869105e-02, -1.29375499e-02, ], "kernel_params": [0.001, 0.0, 3.0], "kernel_type": "LINEAR", "prob_a": [-5.139118194580078], "prob_b": [0.06399919837713242], "rho": [-0.07489691, -0.1764396, -0.21167431, -0.51619097], "post_transform": post_transform, } else: kwargs = { "classlabels_ints": [0, 1], "coefficients": [1.0, 1.0, 1.0, 1.0, -1.0, -1.0, -1.0, -1.0], "kernel_params": [0.3824487328529358, 0.0, 3.0], "kernel_type": "RBF", "prob_a": [-5.139118194580078], "prob_b": [0.06399919837713242], "rho": [0.16708599030971527], "support_vectors": [ 0.19125767052173615, -1.062204122543335, 0.5006636381149292, -0.5892484784126282, -0.3196830451488495, 0.0984845906496048, 0.24746321141719818, -1.1535362005233765, 0.4109955430030823, -0.5937694907188416, -1.3183348178863525, -1.6423596143722534, 0.558641254901886, -0.9218668341636658, 0.6264089345932007, -0.16060839593410492, -0.6365169882774353, 0.8335472345352173, 0.7539799213409424, -0.3970031440258026, -0.1780400276184082, -0.616622805595398, 0.49261474609375, 0.4470972716808319, ], "vectors_per_class": [4, 4], "post_transform": post_transform, } if not probability: del kwargs["prob_a"] del kwargs["prob_b"] node1 = make_node( "SVMClassifier", ["X"], ["I", "Y"], domain="ai.onnx.ml", **kwargs ) graph = make_graph([node1], "ml", [X], [In, Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) return onx @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_svm_classifier_binary(self): x = (np.arange(9).reshape((-1, 3)) - 5).astype(np.float32) / 5 expected_post = { "NONE": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.993287, 0.006713], [0.469401, 0.530599], [0.014997, 0.985003]], dtype=np.float32, ), ), "LOGISTIC": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.729737, 0.501678], [0.615242, 0.629623], [0.503749, 0.7281]], dtype=np.float32, ), ), "SOFTMAX": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.728411, 0.271589], [0.484705, 0.515295], [0.274879, 0.725121]], dtype=np.float32, ), ), "SOFTMAX_ZERO": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.728411, 0.271589], [0.484705, 0.515295], [0.274879, 0.725121]], dtype=np.float32, ), ), "PROBIT": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[2.469393, -2.469391], [-0.076776, 0.076776], [-2.16853, 2.16853]], dtype=np.float32, ), ), } for post, expected in expected_post.items(): with self.subTest(post_transform=post): onx = self._get_test_svm_classifier_binary(post) self._check_ort(onx, {"X": x}, rev=True, atol=1e-5) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[1], got[1], atol=1e-5) assert_allclose(expected[0], got[0]) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_svm_classifier_binary_noprob(self): x = (np.arange(9).reshape((-1, 3)) - 5).astype(np.float32) / 5 expected_post = { "NONE": ( np.array([0, 1, 1], dtype=np.int64), np.array( [ [-0.986073, 0.986073], [0.011387, -0.011387], [0.801808, -0.801808], ], dtype=np.float32, ), ), "LOGISTIC": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.271688, 0.728312], [0.502847, 0.497153], [0.690361, 0.309639]], dtype=np.float32, ), ), "SOFTMAX": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.122158, 0.877842], [0.505693, 0.494307], [0.832523, 0.167477]], dtype=np.float32, ), ), "SOFTMAX_ZERO": ( np.array([0, 1, 1], dtype=np.int64), np.array( [[0.122158, 0.877842], [0.505693, 0.494307], [0.832523, 0.167477]], dtype=np.float32, ), ), } for post, expected in expected_post.items(): with self.subTest(post_transform=post): onx = self._get_test_svm_classifier_binary(post, probability=False) if post not in {"LOGISTIC", "SOFTMAX", "SOFTMAX_ZERO", "PROBIT"}: self._check_ort(onx, {"X": x}, rev=True, atol=1e-5) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[1], got[1], atol=1e-6) assert_allclose(expected[0], got[0]) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_svm_classifier_noprob_linear(self): x = (np.arange(9).reshape((-1, 3)) - 5).astype(np.float32) / 5 nan = np.nan expected_post = { "NONE": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [-0.118086, -0.456685, 0.415783, 0.334506], [-0.061364, -0.231444, 0.073899, 0.091242], [-0.004642, -0.006203, -0.267985, -0.152023], ], dtype=np.float32, ), ), "LOGISTIC": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [0.470513, 0.387773, 0.602474, 0.582855], [0.484664, 0.442396, 0.518466, 0.522795], [0.498839, 0.498449, 0.433402, 0.462067], ], dtype=np.float32, ), ), "SOFTMAX": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [0.200374, 0.14282, 0.341741, 0.315065], [0.240772, 0.203115, 0.275645, 0.280467], [0.275491, 0.275061, 0.211709, 0.237739], ], dtype=np.float32, ), ), "SOFTMAX_ZERO": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [0.200374, 0.14282, 0.341741, 0.315065], [0.240772, 0.203115, 0.275645, 0.280467], [0.275491, 0.275061, 0.211709, 0.237739], ], dtype=np.float32, ), ), "PROBIT": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [nan, nan, -0.212698, -0.427529], [nan, nan, -1.447414, -1.333286], [nan, nan, nan, nan], ], dtype=np.float32, ), ), } for post, expected in expected_post.items(): with self.subTest(post_transform=post): onx = self._get_test_svm_classifier_binary( post, probability=False, linear=True ) self._check_ort(onx, {"X": x}, rev=True, atol=1e-5) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[1], got[1], atol=1e-6) assert_allclose(expected[0], got[0]) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_svm_classifier_linear(self): # prob_a, prob_b are not used in this case. x = (np.arange(9).reshape((-1, 3)) - 5).astype(np.float32) / 5 nan = np.nan expected_post = { "NONE": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [-0.118086, -0.456685, 0.415783, 0.334506], [-0.061364, -0.231444, 0.073899, 0.091242], [-0.004642, -0.006203, -0.267985, -0.152023], ], dtype=np.float32, ), ), "LOGISTIC": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [0.470513, 0.387773, 0.602474, 0.582855], [0.484664, 0.442396, 0.518466, 0.522795], [0.498839, 0.498449, 0.433402, 0.462067], ], dtype=np.float32, ), ), "SOFTMAX": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [0.200374, 0.14282, 0.341741, 0.315065], [0.240772, 0.203115, 0.275645, 0.280467], [0.275491, 0.275061, 0.211709, 0.237739], ], dtype=np.float32, ), ), "SOFTMAX_ZERO": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [0.200374, 0.14282, 0.341741, 0.315065], [0.240772, 0.203115, 0.275645, 0.280467], [0.275491, 0.275061, 0.211709, 0.237739], ], dtype=np.float32, ), ), "PROBIT": ( np.array([2, 3, 0], dtype=np.int64), np.array( [ [nan, nan, -0.212698, -0.427529], [nan, nan, -1.447414, -1.333286], [nan, nan, nan, nan], ], dtype=np.float32, ), ), } for post, expected in expected_post.items(): with self.subTest(post_transform=post): onx = self._get_test_svm_classifier_binary( post, probability=True, linear=True ) self._check_ort(onx, {"X": x}, rev=True, atol=1e-5) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[1], got[1], atol=1e-6) assert_allclose(expected[0], got[0]) @staticmethod def _get_test_svm_classifier_linear_sv(post_transform, probability=True): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) In = make_tensor_value_info("I", TensorProto.INT64, [None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None, None]) kwargs = { "classlabels_ints": [0, 1], "coefficients": [ 0.766398549079895, 0.0871576070785522, 0.110420741140842, -0.963976919651031, ], "support_vectors": [ 4.80000019073486, 3.40000009536743, 1.89999997615814, 5.0, 3.0, 1.60000002384186, 4.5, 2.29999995231628, 1.29999995231628, 5.09999990463257, 2.5, 3.0, ], "kernel_params": [0.122462183237076, 0.0, 3.0], "kernel_type": "LINEAR", "prob_a": [-5.139118194580078], "prob_b": [0.06399919837713242], "rho": [2.23510527610779], "post_transform": post_transform, "vectors_per_class": [3, 1], } if not probability: del kwargs["prob_a"] del kwargs["prob_b"] node1 = make_node( "SVMClassifier", ["X"], ["I", "Y"], domain="ai.onnx.ml", **kwargs ) graph = make_graph([node1], "ml", [X], [In, Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) return onx @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_svm_classifier_binary_noprob_linear_sv(self): x = (np.arange(9).reshape((-1, 3)) - 5).astype(np.float32) / 5 expected_post = { "NONE": ( np.array([0, 0, 0], dtype=np.int64), np.array( [[-2.662655, 2.662655], [-2.21481, 2.21481], [-1.766964, 1.766964]], dtype=np.float32, ), ), "LOGISTIC": ( np.array([0, 0, 0], dtype=np.int64), np.array( [[0.065213, 0.934787], [0.098428, 0.901572], [0.14592, 0.85408]], dtype=np.float32, ), ), "SOFTMAX": ( np.array([0, 0, 0], dtype=np.int64), np.array( [[0.004843, 0.995157], [0.011779, 0.988221], [0.028362, 0.971638]], dtype=np.float32, ), ), "SOFTMAX_ZERO": ( np.array([0, 0, 0], dtype=np.int64), np.array( [[0.004843, 0.995157], [0.011779, 0.988221], [0.028362, 0.971638]], dtype=np.float32, ), ), } for post, expected in expected_post.items(): with self.subTest(post_transform=post): onx = self._get_test_svm_classifier_linear_sv(post, probability=False) if post not in {"LOGISTIC", "SOFTMAX", "SOFTMAX_ZERO"}: self._check_ort(onx, {"X": x}, rev=True, atol=1e-5) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[1], got[1], atol=1e-6) assert_allclose(expected[0], got[0]) @staticmethod def _get_test_svm_regressor_linear(post_transform, one_class=0): X = make_tensor_value_info("X", TensorProto.FLOAT, [None, None]) Y = make_tensor_value_info("Y", TensorProto.FLOAT, [None]) kwargs = { "coefficients": [0.28290501, -0.0266512, 0.01674867], "kernel_params": [0.001, 0.0, 3.0], "kernel_type": "LINEAR", "rho": [1.24032312], "post_transform": post_transform, "n_supports": 0, "one_class": one_class, } node1 = make_node("SVMRegressor", ["X"], ["Y"], domain="ai.onnx.ml", **kwargs) graph = make_graph([node1], "ml", [X], [Y]) onx = make_model_gen_version(graph, opset_imports=OPSETS) check_model(onx) return onx @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_svm_regressor_linear(self): x = (np.arange(9).reshape((-1, 3)) - 5).astype(np.float32) / 5 expected_post = { "NONE": ( np.array( [[0.96869], [1.132491], [1.296293]], dtype=np.float32, ), ), } for post, expected in expected_post.items(): with self.subTest(post_transform=post): onx = self._get_test_svm_regressor_linear(post) self._check_ort(onx, {"X": x}, rev=True, atol=1e-5) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[0], got[0], atol=1e-6) @unittest.skipIf(not ONNX_ML, reason="onnx not compiled with ai.onnx.ml") def test_svm_regressor_linear_one_class(self): x = (np.arange(9).reshape((-1, 3)) - 5).astype(np.float32) / 5 expected_post = { "NONE": ( np.array( [[1.0], [1.0], [1.0]], dtype=np.float32, ), ), } for post, expected in expected_post.items(): with self.subTest(post_transform=post): onx = self._get_test_svm_regressor_linear(post, one_class=1) self._check_ort(onx, {"X": x}, rev=True, atol=1e-5) sess = ReferenceEvaluator(onx) got = sess.run(None, {"X": x}) assert_allclose(expected[0], got[0], atol=1e-6) if __name__ == "__main__": unittest.main(verbosity=2)
{"/onnx/backend/test/case/node/sign.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/backend/test/case/node/dft.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/parser.py": ["/onnx/__init__.py"], "/onnx/backend/test/case/node/constantofshape.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/backend/test/case/node/averagepool.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py", "/onnx/reference/ops/op_pool_common.py"], "/onnx/backend/test/runner/__init__.py": ["/onnx/__init__.py", "/onnx/backend/base.py", "/onnx/backend/test/case/test_case.py", "/onnx/backend/test/loader/__init__.py", "/onnx/backend/test/runner/item.py"], "/onnx/reference/ops/op_topk.py": ["/onnx/reference/op_run.py"], "/onnx/reference/ops/op_image_decoder.py": ["/onnx/reference/op_run.py"], "/onnx/reference/ops/op_non_max_suppression.py": ["/onnx/reference/op_run.py"], "/onnx/backend/test/case/node/logsoftmax.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/reference/ops/op_affine_grid.py": ["/onnx/reference/op_run.py"], "/onnx/reference/ops/op_lp_normalization.py": ["/onnx/reference/ops/_op.py"], "/onnx/reference/ops/op_rnn.py": ["/onnx/reference/op_run.py"], "/onnx/backend/test/case/node/not.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/reference/ops/op_reduce_sum.py": ["/onnx/reference/ops/_op.py"], "/onnx/reference/ops/op_mean.py": ["/onnx/reference/op_run.py"], "/onnx/reference/ops/op_roi_align.py": ["/onnx/reference/op_run.py"], "/onnx/reference/ops/op_center_crop_pad.py": ["/onnx/reference/op_run.py"], "/onnx/backend/test/case/node/nonmaxsuppression.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/backend/test/case/node/dropout.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/test/model_inference_test.py": ["/onnx/__init__.py", "/onnx/parser.py", "/onnx/shape_inference.py"], "/onnx/test/inliner_test.py": ["/onnx/__init__.py"], "/onnx/backend/test/case/node/argmin.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/reference/op_run.py": ["/onnx/__init__.py", "/onnx/defs/__init__.py", "/onnx/helper.py", "/onnx/numpy_helper.py", "/onnx/reference/custom_element_types.py", "/onnx/reference/reference_evaluator.py"], "/onnx/reference/ops/op_max_unpool.py": ["/onnx/reference/op_run.py"], "/onnx/backend/test/case/node/reversesequence.py": ["/onnx/__init__.py", "/onnx/backend/test/case/base.py", "/onnx/backend/test/case/node/__init__.py"], "/onnx/backend/test/case/node/celu.py": 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58,804
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_softmax.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.ops._op import OpRunUnaryNum class Softmax(OpRunUnaryNum): def _run(self, X, axis=None): # type: ignore axis = axis or self.axis # type: ignore tmp = X - X.max(axis=axis, keepdims=1) # type: ignore Y = np.exp(tmp) Y /= Y.sum(axis=axis, keepdims=1) # type: ignore return (Y.astype(X.dtype),)
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58,805
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/reduce_log_sum_exp.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class ReduceLogSumExp(Base): @staticmethod def export_do_not_keepdims() -> None: shape = [3, 2, 2] axes = np.array([1], dtype=np.int64) keepdims = 0 node = onnx.helper.make_node( "ReduceLogSumExp", inputs=["data", "axes"], outputs=["reduced"], keepdims=keepdims, ) data = np.array( [[[5, 1], [20, 2]], [[30, 1], [40, 2]], [[55, 1], [60, 2]]], dtype=np.double ) reduced = np.log(np.sum(np.exp(data), axis=tuple(axes), keepdims=keepdims == 1)) # print(reduced) # [[20., 2.31326175] # [40.00004578, 2.31326175] # [60.00671387, 2.31326175]] expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_log_sum_exp_do_not_keepdims_example", ) np.random.seed(0) data = np.random.uniform(-10, 10, shape).astype(np.double) reduced = np.log(np.sum(np.exp(data), axis=tuple(axes), keepdims=keepdims == 1)) expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_log_sum_exp_do_not_keepdims_random", ) @staticmethod def export_keepdims() -> None: shape = [3, 2, 2] axes = np.array([1], dtype=np.int64) keepdims = 1 node = onnx.helper.make_node( "ReduceLogSumExp", inputs=["data", "axes"], outputs=["reduced"], keepdims=keepdims, ) data = np.array( [[[5, 1], [20, 2]], [[30, 1], [40, 2]], [[55, 1], [60, 2]]], dtype=np.double ) reduced = np.log(np.sum(np.exp(data), axis=tuple(axes), keepdims=keepdims == 1)) # print(reduced) # [[[20., 2.31326175]] # [[40.00004578, 2.31326175]] # [[60.00671387, 2.31326175]]] expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_log_sum_exp_keepdims_example", ) np.random.seed(0) data = np.random.uniform(-10, 10, shape).astype(np.double) reduced = np.log(np.sum(np.exp(data), axis=tuple(axes), keepdims=keepdims == 1)) expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_log_sum_exp_keepdims_random", ) @staticmethod def export_default_axes_keepdims() -> None: shape = [3, 2, 2] axes = np.array([], dtype=np.int64) keepdims = 1 node = onnx.helper.make_node( "ReduceLogSumExp", inputs=["data", "axes"], outputs=["reduced"], keepdims=keepdims, ) data = np.array( [[[5, 1], [20, 2]], [[30, 1], [40, 2]], [[55, 1], [60, 2]]], dtype=np.double ) reduced = np.log(np.sum(np.exp(data), axis=None, keepdims=keepdims == 1)) # print(reduced) # [[[60.00671387]]] expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_log_sum_exp_default_axes_keepdims_example", ) np.random.seed(0) data = np.random.uniform(-10, 10, shape).astype(np.double) reduced = np.log(np.sum(np.exp(data), axis=None, keepdims=keepdims == 1)) expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_log_sum_exp_default_axes_keepdims_random", ) @staticmethod def export_negative_axes_keepdims() -> None: shape = [3, 2, 2] axes = np.array([-2], dtype=np.int64) keepdims = 1 node = onnx.helper.make_node( "ReduceLogSumExp", inputs=["data", "axes"], outputs=["reduced"], keepdims=keepdims, ) data = np.array( [[[5, 1], [20, 2]], [[30, 1], [40, 2]], [[55, 1], [60, 2]]], dtype=np.double ) reduced = np.log(np.sum(np.exp(data), axis=tuple(axes), keepdims=keepdims == 1)) # print(reduced) # [[[20., 2.31326175]] # [[40.00004578, 2.31326175]] # [[60.00671387, 2.31326175]]] expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_log_sum_exp_negative_axes_keepdims_example", ) np.random.seed(0) data = np.random.uniform(-10, 10, shape).astype(np.double) reduced = np.log( np.sum(np.exp(data), axis=tuple(axes.tolist()), keepdims=keepdims == 1) ) expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_log_sum_exp_negative_axes_keepdims_random", )
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58,806
onnx/onnx
refs/heads/main
/onnx/backend/test/case/utils.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 import importlib import pkgutil from types import ModuleType from typing import List, Optional import numpy as np from onnx import ONNX_ML all_numeric_dtypes = [ np.int8, np.int16, np.int32, np.int64, np.uint8, np.uint16, np.uint32, np.uint64, np.float16, np.float32, np.float64, ] def import_recursive(package: ModuleType) -> None: """ Takes a package and imports all modules underneath it """ pkg_dir: Optional[List[str]] = None pkg_dir = package.__path__ # type: ignore module_location = package.__name__ for _module_loader, name, ispkg in pkgutil.iter_modules(pkg_dir): module_name = f"{module_location}.{name}" # Module/package if not ONNX_ML and module_name.startswith( "onnx.backend.test.case.node.ai_onnx_ml" ): continue module = importlib.import_module(module_name) if ispkg: import_recursive(module)
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58,807
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_non_zero.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.op_run import OpRun class NonZero(OpRun): def _run(self, x): # type: ignore # Specify np.int64 for Windows x86 machines res = np.vstack(np.nonzero(x)).astype(np.int64) return (res,)
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58,808
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/prelu.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class PRelu(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "PRelu", inputs=["x", "slope"], outputs=["y"], ) x = np.random.randn(3, 4, 5).astype(np.float32) slope = np.random.randn(3, 4, 5).astype(np.float32) y = np.clip(x, 0, np.inf) + np.clip(x, -np.inf, 0) * slope expect(node, inputs=[x, slope], outputs=[y], name="test_prelu_example") @staticmethod def export_prelu_broadcast() -> None: node = onnx.helper.make_node( "PRelu", inputs=["x", "slope"], outputs=["y"], ) x = np.random.randn(3, 4, 5).astype(np.float32) slope = np.random.randn(5).astype(np.float32) y = np.clip(x, 0, np.inf) + np.clip(x, -np.inf, 0) * slope expect(node, inputs=[x, slope], outputs=[y], name="test_prelu_broadcast")
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58,809
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_conv.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0912,R0913,R0914,R0915,R1702,W0221 import numpy as np from onnx.reference.op_run import OpRun def _conv_implementation( # type: ignore X, W, B, auto_pad, dilations, group, kernel_shape, pads, strides ): if dilations is None: dilations = [1 for s in X.shape[2:]] if kernel_shape is None: kernel_shape = W.shape[2:] if pads is None: pads = [0 for s in X.shape[2:]] * 2 if strides is None: strides = [1 for s in X.shape[2:]] if X.shape[1] != W.shape[1] * group or W.shape[0] % group != 0: raise ValueError( f"Shape inconsistencies, X.shape={X.shape}, W.shape={W.shape}, group={group}, " f"W should be {(W.shape[0], X.shape[1] // group, np.prod(W.shape[1:]) // X.shape[1] * group)}." ) if group > 1: res = [] td = 0 mg = W.shape[0] // group dw = W.shape[1] for b in range(X.shape[0]): for g in range(group): gx = X[b : b + 1, g * dw : (g + 1) * dw] gw = W[g * mg : (g + 1) * mg] try: cv = _conv_implementation( gx, gw, None, auto_pad, dilations, 1, kernel_shape, pads, strides, ) except (ValueError, RuntimeError) as e: raise ValueError( f"Shape inconsistencies, X.shape={X.shape}, W.shape={W.shape}, group={g}/{group}, " f"gx.shape={gx.shape}, gw.shape={gw.shape}, auto_pad={auto_pad}, " f"dilations={dilations}, kernel_shape={kernel_shape}, pads={pads}, " f"strides={strides}." ) from e if b == 0: td += cv.shape[1] res.append((b, cv)) new_shape = [X.shape[0], *list(res[0][1].shape[1:])] new_shape[1] = td final = np.zeros(tuple(new_shape), dtype=res[0][1].dtype) p = 0 for b, cv in res: final[b : b + 1, p : p + cv.shape[1]] = cv p += cv.shape[1] if p >= final.shape[1]: p = 0 if B is not None: new_shape = [1 for s in final.shape] new_shape[1] = B.shape[0] b = B.reshape(tuple(new_shape)) final += b return final if dilations[0] != 1 or min(dilations) != max(dilations): # Let's compute the dilated kernel. nd = len(dilations) new_kernel_shape = [] new_shape = list(W.shape[:-nd]) for i, d in enumerate(dilations): di = len(W.shape) - nd + i new_shape.append(W.shape[di] + (W.shape[di] - 1) * (d - 1)) new_kernel_shape.append(kernel_shape[i] + (kernel_shape[i] - 1) * (d - 1)) new_w = np.zeros(tuple(new_shape), dtype=W.dtype) indices = [slice(0, new_w.shape[0]), slice(0, new_w.shape[1])] for i, d in enumerate(dilations): di = len(W.shape) - nd + i indices.append(slice(0, new_w.shape[di], d)) new_w[tuple(indices)] = W W = new_w kernel_shape = new_kernel_shape if auto_pad in {"SAME_LOWER", "SAME_UPPER", "VALID"}: head = [] tail = [] for i in range(len(X.shape) - 2): d = X.shape[i] target_size = (d + strides[i] - 1) // strides[i] pad_needed = (target_size - 1) * strides[i] + kernel_shape[i] - d if auto_pad == "SAME_LOWER": pad_head = (pad_needed + 1) // 2 else: pad_head = pad_needed // 2 pad_tail = pad_needed - pad_head head.append(pad_head) tail.append(pad_tail) pads = head + tail if len(X.shape) == 3: sN, sC, sH = X.shape # M, C_group, kH, kW = W.shape (kh,) = kernel_shape (sth,) = strides h_out = int(((sH - kh + pads[0] + pads[1]) / sth) + 1) h0 = pads[0] oh = -1 * (kh % 2) bh = -h0 eh = h_out * sth res = np.zeros((X.shape[0], W.shape[0], h_out)) # type: ignore[assignment] if B is not None: res[:, :, :] += B.reshape((1, -1, 1)) # type: ignore for n in range(0, sN): for nw in range(W.shape[0]): for c in range(0, sC): w = W[nw : nw + 1, c : c + 1] for io in range(bh, eh, sth): hr = (io - bh) // sth if hr >= h_out: continue i = io + kh % 2 ih1, ih2 = max(0, i + oh), min(i + oh + kh, sH) img = X[n : n + 1, c : c + 1, ih1:ih2] if img.shape != w.shape: jh1, jh2 = max(-oh - i, 0), min(kh, kh + sH - (i + oh + kh)) w_ = w[:1, :1, jh1:jh2] if img.shape != w_.shape: raise RuntimeError( f"Unexpected shape {img.shape} != {w_.shape}, oh={oh}, " f"i={i}, kh={kh}, sH={sH}, sth={sth}." ) s = np.dot(img.reshape((1, -1)), w_.reshape((-1, 1)))[ 0, 0 ] # (img * w_).sum() else: s = np.dot(img.reshape((1, -1)), w.reshape((-1, 1)))[ 0, 0 ] # (img * w).sum() res[n, nw, hr] += s # type: ignore return res if len(X.shape) == 4: sN, sC, sH, sW = X.shape # M, C_group, kH, kW = W.shape kh, kw = kernel_shape sth, stw = strides h_out = int(((sH - kh + pads[0] + pads[2]) / sth) + 1) w_out = int(((sW - kw + pads[1] + pads[3]) / stw) + 1) h0, w0 = pads[0], pads[1] oh, ow = -1 * (kh % 2), -1 * (kw % 2) bh, bw = -h0, -w0 eh, ew = h_out * sth, w_out * stw res = np.zeros((X.shape[0], W.shape[0], h_out, w_out)) # type: ignore[assignment] if B is not None: res[:, :, :, :] = B.reshape((1, -1, 1, 1)) # type: ignore for n in range(0, sN): for nw in range(W.shape[0]): for c in range(0, sC): w = W[nw : nw + 1, c : c + 1] for io in range(bh, eh, sth): hr = (io - bh) // sth if hr >= h_out: continue i = io + kh % 2 ih1, ih2 = max(0, i + oh), min(i + oh + kh, sH) for jo in range(bw, ew, stw): wr = (jo - bw) // stw if wr >= w_out: continue j = jo + kw % 2 iw1, iw2 = max(0, j + ow), min(j + ow + kw, sW) img = X[n : n + 1, c : c + 1, ih1:ih2, iw1:iw2] if img.shape != w.shape: jh1, jh2 = max(-oh - i, 0), min( kh, kh + sH - (i + oh + kh) ) jw1, jw2 = max(-ow - j, 0), min( kw, kw + sW - (j + ow + kw) ) w_ = w[:1, :1, jh1:jh2, jw1:jw2] if img.shape != w_.shape: raise RuntimeError( f"Unexpected shape {img.shape} != {w_.shape}, oh={oh}, ow={ow}, " f"i={i}, j={j}, kh={kh}, kw={kw}, sH={sH}, sW={sW}, sth={sth}, stw={stw}." ) s = np.dot(img.reshape((1, -1)), w_.reshape((-1, 1)))[ 0, 0 ] # (img * w_).sum() else: s = np.dot(img.reshape((1, -1)), w.reshape((-1, 1)))[ 0, 0 ] # (img * w).sum() res[n, nw, hr, wr] += s # type: ignore return res if len(X.shape) == 5: sN, sC, sH, sW, sZ = X.shape kh, kw, kz = kernel_shape sth, stw, stz = strides h_out = int(((sH - kh + pads[0] + pads[3]) / sth) + 1) w_out = int(((sW - kw + pads[1] + pads[4]) / stw) + 1) z_out = int(((sZ - kz + pads[2] + pads[5]) / stz) + 1) h0, w0, z0 = pads[0], pads[1], pads[2] oh, ow, oz = -1 * (kh % 2), -1 * (kw % 2), -1 * (kz % 2) bh, bw, bz = -h0, -w0, -z0 eh, ew, ez = h_out * sth, w_out * stw, z_out * stz res = np.zeros((X.shape[0], W.shape[0], h_out, w_out, z_out)) # type: ignore[assignment] if B is not None: res[:, :, :, :, :] = B.reshape((1, -1, 1, 1, 1)) # type: ignore for n in range(0, sN): for nw in range(W.shape[0]): for c in range(0, sC): w = W[nw : nw + 1, c : c + 1] for io in range(bh, eh, sth): hr = (io - bh) // sth if hr >= h_out: continue i = io + kh % 2 ih1, ih2 = max(0, i + oh), min(i + oh + kh, sH) for jo in range(bw, ew, stw): wr = (jo - bw) // stw if wr >= w_out: continue j = jo + kw % 2 iw1, iw2 = max(0, j + ow), min(j + ow + kw, sW) for zo in range(bz, ez, stz): zr = (zo - bz) // stz if zr >= z_out: continue z = zo + kz % 2 iz1, iz2 = max(0, z + oz), min(z + oz + kz, sZ) img = X[n : n + 1, c : c + 1, ih1:ih2, iw1:iw2, iz1:iz2] if img.shape != w.shape: jh1, jh2 = max(-oh - i, 0), min( kh, kh + sH - (i + oh + kh) ) jw1, jw2 = max(-ow - j, 0), min( kw, kw + sW - (j + ow + kw) ) jz1, jz2 = max(-oz - z, 0), min( kz, kz + sZ - (z + oz + kz) ) w_ = w[:1, :1, jh1:jh2, jw1:jw2, jz1:jz2] if img.shape != w_.shape: raise RuntimeError( f"Unexpected shape {img.shape} != {w_.shape}, oh={oh}, ow={ow}, oz={oz}, " f"i={i}, j={j}, z={z}, kh={kh}, kw={kw}, kz={kz}, " f"sH={sH}, sW={sW}, sZ={sZ}, sth={sth}, stw={stw}, stz={stz}." ) s = np.dot( img.reshape((1, -1)), w_.reshape((-1, 1)) )[ 0, 0 ] # (img * w_).sum() else: s = np.dot( img.reshape((1, -1)), w.reshape((-1, 1)) )[ 0, 0 ] # (img * w).sum() res[n, nw, hr, wr, zr] += s # type: ignore return res raise RuntimeError( f"The convolution for X.shape={X.shape}, W.shape={W.shape}, " f"kernel_shape={kernel_shape} is not implemented yet." ) class Conv(OpRun): def _run( # type: ignore self, X, W, B=None, auto_pad=None, dilations=None, group=None, kernel_shape=None, pads=None, strides=None, ): if len(X.shape) < 3: raise ValueError( f"X must have at least 3 dimensions but its shape is {X.shape}." ) return ( # _conv_implementation( _conv_implementation( X, W, B, auto_pad, dilations, group, kernel_shape, pads, strides ).astype(X.dtype), )
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58,810
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/lppool.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect from onnx.reference.ops.op_pool_common import ( get_output_shape_auto_pad, get_output_shape_explicit_padding, get_pad_shape, pool, ) class LpPool(Base): @staticmethod def export_lppool_1d_default() -> None: """ input_shape: [1, 3, 32] output_shape: [1, 3, 31] """ p = 3 kernel_shape = [2] strides = [1] node = onnx.helper.make_node( "LpPool", inputs=["x"], outputs=["y"], kernel_shape=kernel_shape, strides=strides, p=p, ) x = np.random.randn(1, 3, 32).astype(np.float32) x_shape = np.shape(x) pads = None out_shape, _ = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides ) padded = x y = pool(padded, x_shape, kernel_shape, strides, out_shape, "LPPOOL", p=p) expect(node, inputs=[x], outputs=[y], name="test_lppool_1d_default") @staticmethod def export_lppool_2d_default() -> None: """ input_shape: [1, 3, 32, 32] output_shape: [1, 3, 31, 31] """ p = 4 node = onnx.helper.make_node( "LpPool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2], p=p, ) x = np.random.randn(1, 3, 32, 32).astype(np.float32) x_shape = np.shape(x) pads = None kernel_shape = (2, 2) strides = (1, 1) out_shape, _ = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides ) padded = x y = pool(padded, x_shape, kernel_shape, strides, out_shape, "LPPOOL", p=p) expect(node, inputs=[x], outputs=[y], name="test_lppool_2d_default") @staticmethod def export_lppool_3d_default() -> None: """ input_shape: [1, 3, 32, 32, 32] output_shape: [1, 3, 31, 31, 31] """ p = 3 node = onnx.helper.make_node( "LpPool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2, 2], p=p, ) x = np.random.randn(1, 3, 32, 32, 32).astype(np.float32) x_shape = np.shape(x) pads = None kernel_shape = [2, 2, 2] strides = [1, 1, 1] out_shape, _ = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides ) padded = x y = pool(padded, x_shape, kernel_shape, strides, out_shape, "LPPOOL", p=p) expect(node, inputs=[x], outputs=[y], name="test_lppool_3d_default") @staticmethod def export_lppool_2d_same_upper() -> None: """ input_shape: [1, 3, 32, 32] output_shape: [1, 3, 32, 32] pad_shape: [1, 1] -> [0, 1, 0, 1] by axis """ p = 2 node = onnx.helper.make_node( "LpPool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2], auto_pad="SAME_UPPER", p=p, ) x = np.random.randn(1, 3, 32, 32).astype(np.float32) x_shape = np.shape(x) kernel_shape = (2, 2) strides = (1, 1) out_shape = get_output_shape_auto_pad( "SAME_UPPER", x_shape[2:], kernel_shape, strides ) pad_shape = get_pad_shape( "SAME_UPPER", x_shape[2:], kernel_shape, strides, out_shape ) pad_top = pad_shape[0] // 2 pad_bottom = pad_shape[0] - pad_top pad_left = pad_shape[1] // 2 pad_right = pad_shape[1] - pad_left padded = np.pad( x, ((0, 0), (0, 0), (pad_top, pad_bottom), (pad_left, pad_right)), mode="constant", constant_values=0, ) pads = [pad_top, pad_left, pad_bottom, pad_right] y = pool(padded, x_shape, kernel_shape, strides, out_shape, "LPPOOL", pads, p=p) expect(node, inputs=[x], outputs=[y], name="test_lppool_2d_same_upper") @staticmethod def export_lppool_2d_same_lower() -> None: """ input_shape: [1, 3, 32, 32] output_shape: [1, 3, 32, 32] pad_shape: [1, 1] -> [1, 0, 1, 0] by axis """ p = 4 node = onnx.helper.make_node( "LpPool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2], auto_pad="SAME_LOWER", p=p, ) x = np.random.randn(1, 3, 32, 32).astype(np.float32) x_shape = np.shape(x) kernel_shape = (2, 2) strides = (1, 1) out_shape = get_output_shape_auto_pad( "SAME_LOWER", x_shape[2:], kernel_shape, strides ) pad_shape = get_pad_shape( "SAME_LOWER", x_shape[2:], kernel_shape, strides, out_shape ) pad_bottom = pad_shape[0] // 2 pad_top = pad_shape[0] - pad_bottom pad_right = pad_shape[1] // 2 pad_left = pad_shape[1] - pad_right padded = np.pad( x, ((0, 0), (0, 0), (pad_top, pad_bottom), (pad_left, pad_right)), mode="constant", constant_values=0, ) pads = [pad_top, pad_left, pad_bottom, pad_right] y = pool(padded, x_shape, kernel_shape, strides, out_shape, "LPPOOL", pads, p=p) expect(node, inputs=[x], outputs=[y], name="test_lppool_2d_same_lower") @staticmethod def export_lppool_2d_pads() -> None: """ input_shape: [1, 3, 28, 28] output_shape: [1, 3, 30, 30] pad_shape: [4, 4] -> [2, 2, 2, 2] by axis """ p = 3 node = onnx.helper.make_node( "LpPool", inputs=["x"], outputs=["y"], kernel_shape=[3, 3], pads=[2, 2, 2, 2], p=p, ) x = np.random.randn(1, 3, 28, 28).astype(np.float32) x_shape = np.shape(x) kernel_shape = (3, 3) strides = (1, 1) pad_bottom = pad_top = pad_right = pad_left = 2 pads = [pad_top, pad_left, pad_bottom, pad_right] out_shape, pads = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides ) padded = np.pad( x, ((0, 0), (0, 0), (pad_top, pad_bottom), (pad_left, pad_right)), mode="constant", constant_values=0, ) y = pool(padded, x_shape, kernel_shape, strides, out_shape, "LPPOOL", pads, p=p) expect(node, inputs=[x], outputs=[y], name="test_lppool_2d_pads") @staticmethod def export_lppool_2d_strides() -> None: """ input_shape: [1, 3, 32, 32] output_shape: [1, 3, 10, 10] """ p = 2 node = onnx.helper.make_node( "LpPool", inputs=["x"], outputs=["y"], kernel_shape=[5, 5], strides=[3, 3], p=p, ) x = np.random.randn(1, 3, 32, 32).astype(np.float32) x_shape = np.shape(x) pads = None kernel_shape = (5, 5) strides = (3, 3) out_shape, _ = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides ) padded = x y = pool(padded, x_shape, kernel_shape, strides, out_shape, "LPPOOL", p=p) expect(node, inputs=[x], outputs=[y], name="test_lppool_2d_strides") @staticmethod def export_lppool_2d_dilations() -> None: """ input_shape: [1, 1, 4, 4] output_shape: [1, 1, 2, 2] """ p = 2 node = onnx.helper.make_node( "LpPool", inputs=["x"], outputs=["y"], kernel_shape=[2, 2], strides=[1, 1], dilations=[2, 2], p=p, ) x = np.array( [ [ [ [1, 2, 3, 4], [5, 6, 7, 8], [9, 10, 11, 12], [13, 14, 15, 16], ] ] ] ).astype(np.float32) y = np.array( [ [ [ [14.560219778561036, 16.24807680927192], [21.633307652783937, 23.49468024894146], ] ] ] ).astype(np.float32) expect(node, inputs=[x], outputs=[y], name="test_lppool_2d_dilations")
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58,811
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/hardswish.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect def hardswish(x: np.ndarray) -> np.ndarray: alfa = float(1 / 6) beta = 0.5 return x * np.maximum(0, np.minimum(1, alfa * x + beta)) class HardSwish(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "HardSwish", inputs=["x"], outputs=["y"], ) x = np.random.randn(3, 4, 5).astype(np.float32) y = hardswish(x) expect(node, inputs=[x], outputs=[y], name="test_hardswish")
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58,812
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/thresholdedrelu.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class ThresholdedRelu(Base): @staticmethod def export() -> None: alpha = 2.0 node = onnx.helper.make_node( "ThresholdedRelu", inputs=["x"], outputs=["y"], alpha=alpha ) x = np.array([-1.5, 0.0, 1.2, 2.0, 2.2]).astype(np.float32) y = np.clip(x, alpha, np.inf) # expected output [0., 0., 0., 0., 2.2] y[y == alpha] = 0 expect(node, inputs=[x], outputs=[y], name="test_thresholdedrelu_example") x = np.random.randn(3, 4, 5).astype(np.float32) y = np.clip(x, alpha, np.inf) y[y == alpha] = 0 expect(node, inputs=[x], outputs=[y], name="test_thresholdedrelu") @staticmethod def export_default() -> None: default_alpha = 1.0 node = onnx.helper.make_node("ThresholdedRelu", inputs=["x"], outputs=["y"]) x = np.random.randn(3, 4, 5).astype(np.float32) y = np.clip(x, default_alpha, np.inf) y[y == default_alpha] = 0 expect(node, inputs=[x], outputs=[y], name="test_thresholdedrelu_default")
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58,813
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_leaky_relu.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.ops._op import OpRunUnaryNum def _leaky_relu(x: np.ndarray, alpha: float) -> np.ndarray: sign = (x > 0).astype(x.dtype) sign -= ((sign - 1) * alpha).astype(x.dtype) return x * sign # type: ignore class LeakyRelu(OpRunUnaryNum): def _run(self, x, alpha=None): # type: ignore alpha = alpha or self.alpha # type: ignore return (_leaky_relu(x, alpha).astype(x.dtype),)
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58,814
onnx/onnx
refs/heads/main
/onnx/test/helper_test.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=unnecessary-lambda import random import struct import unittest from typing import Any, List, Tuple import numpy as np import pytest from onnx import ( AttributeProto, GraphProto, ModelProto, OptionalProto, SequenceProto, TensorProto, TypeProto, checker, defs, helper, numpy_helper, ) class TestHelperAttributeFunctions(unittest.TestCase): def test_attr_float(self) -> None: # float attr = helper.make_attribute("float", 1.0) self.assertEqual(attr.name, "float") self.assertEqual(attr.f, 1.0) checker.check_attribute(attr) # float with scientific attr = helper.make_attribute("float", 1e10) self.assertEqual(attr.name, "float") self.assertEqual(attr.f, 1e10) checker.check_attribute(attr) def test_attr_int(self) -> None: # integer attr = helper.make_attribute("int", 3) self.assertEqual(attr.name, "int") self.assertEqual(attr.i, 3) checker.check_attribute(attr) # long integer attr = helper.make_attribute("int", 5) self.assertEqual(attr.name, "int") self.assertEqual(attr.i, 5) checker.check_attribute(attr) # octinteger attr = helper.make_attribute("int", 0o1701) self.assertEqual(attr.name, "int") self.assertEqual(attr.i, 0o1701) checker.check_attribute(attr) # hexinteger attr = helper.make_attribute("int", 0x1701) self.assertEqual(attr.name, "int") self.assertEqual(attr.i, 0x1701) checker.check_attribute(attr) def test_attr_doc_string(self) -> None: attr = helper.make_attribute("a", "value") self.assertEqual(attr.name, "a") self.assertEqual(attr.doc_string, "") attr = helper.make_attribute("a", "value", "doc") self.assertEqual(attr.name, "a") self.assertEqual(attr.doc_string, "doc") def test_attr_string(self) -> None: # bytes attr = helper.make_attribute("str", b"test") self.assertEqual(attr.name, "str") self.assertEqual(attr.s, b"test") checker.check_attribute(attr) # unspecified attr = helper.make_attribute("str", "test") self.assertEqual(attr.name, "str") self.assertEqual(attr.s, b"test") checker.check_attribute(attr) # unicode attr = helper.make_attribute("str", "test") self.assertEqual(attr.name, "str") self.assertEqual(attr.s, b"test") checker.check_attribute(attr) # empty str attr = helper.make_attribute("str", "") self.assertEqual(attr.name, "str") self.assertEqual(helper.get_attribute_value(attr), b"") checker.check_attribute(attr) def test_attr_repeated_float(self) -> None: attr = helper.make_attribute("floats", [1.0, 2.0]) self.assertEqual(attr.name, "floats") self.assertEqual(list(attr.floats), [1.0, 2.0]) checker.check_attribute(attr) def test_attr_repeated_int(self) -> None: attr = helper.make_attribute("ints", [1, 2]) self.assertEqual(attr.name, "ints") self.assertEqual(list(attr.ints), [1, 2]) checker.check_attribute(attr) def test_attr_repeated_mixed_floats_and_ints(self) -> None: attr = helper.make_attribute("mixed", [1, 2, 3.0, 4.5]) self.assertEqual(attr.name, "mixed") self.assertEqual(list(attr.floats), [1.0, 2.0, 3.0, 4.5]) checker.check_attribute(attr) def test_attr_repeated_str(self) -> None: attr = helper.make_attribute("strings", ["str1", "str2"]) self.assertEqual(attr.name, "strings") self.assertEqual(list(attr.strings), [b"str1", b"str2"]) checker.check_attribute(attr) def test_attr_repeated_tensor_proto(self) -> None: tensors = [ helper.make_tensor( name="a", data_type=TensorProto.FLOAT, dims=(1,), vals=np.ones(1) ), helper.make_tensor( name="b", data_type=TensorProto.FLOAT, dims=(1,), vals=np.ones(1) ), ] attr = helper.make_attribute("tensors", tensors) self.assertEqual(attr.name, "tensors") self.assertEqual(list(attr.tensors), tensors) checker.check_attribute(attr) def test_attr_sparse_tensor_proto(self) -> None: dense_shape = [3, 3] sparse_values = [1.764052391052246, 0.40015721321105957, 0.978738009929657] values_tensor = helper.make_tensor( name="sparse_values", data_type=TensorProto.FLOAT, dims=[len(sparse_values)], vals=np.array(sparse_values).astype(np.float32), raw=False, ) linear_indices = [2, 3, 5] indices_tensor = helper.make_tensor( name="indices", data_type=TensorProto.INT64, dims=[len(linear_indices)], vals=np.array(linear_indices).astype(np.int64), raw=False, ) sparse_tensor = helper.make_sparse_tensor( values_tensor, indices_tensor, dense_shape ) attr = helper.make_attribute("sparse_attr", sparse_tensor) self.assertEqual(attr.name, "sparse_attr") checker.check_sparse_tensor(helper.get_attribute_value(attr)) checker.check_attribute(attr) def test_attr_sparse_tensor_repeated_protos(self) -> None: dense_shape = [3, 3] sparse_values = [1.764052391052246, 0.40015721321105957, 0.978738009929657] values_tensor = helper.make_tensor( name="sparse_values", data_type=TensorProto.FLOAT, dims=[len(sparse_values)], vals=np.array(sparse_values).astype(np.float32), raw=False, ) linear_indices = [2, 3, 5] indices_tensor = helper.make_tensor( name="indices", data_type=TensorProto.INT64, dims=[len(linear_indices)], vals=np.array(linear_indices).astype(np.int64), raw=False, ) sparse_tensor = helper.make_sparse_tensor( values_tensor, indices_tensor, dense_shape ) repeated_sparse = [sparse_tensor, sparse_tensor] attr = helper.make_attribute("sparse_attrs", repeated_sparse) self.assertEqual(attr.name, "sparse_attrs") checker.check_attribute(attr) for s in helper.get_attribute_value(attr): checker.check_sparse_tensor(s) def test_attr_repeated_graph_proto(self) -> None: graphs = [GraphProto(), GraphProto()] graphs[0].name = "a" graphs[1].name = "b" attr = helper.make_attribute("graphs", graphs) self.assertEqual(attr.name, "graphs") self.assertEqual(list(attr.graphs), graphs) checker.check_attribute(attr) def test_attr_type_proto(self) -> None: # type_proto type_proto = TypeProto() attr = helper.make_attribute("type_proto", type_proto) self.assertEqual(attr.name, "type_proto") self.assertEqual(attr.tp, type_proto) self.assertEqual(attr.type, AttributeProto.TYPE_PROTO) # type_protos types = [TypeProto(), TypeProto()] attr = helper.make_attribute("type_protos", types) self.assertEqual(attr.name, "type_protos") self.assertEqual(list(attr.type_protos), types) self.assertEqual(attr.type, AttributeProto.TYPE_PROTOS) def test_attr_empty_list(self) -> None: attr = helper.make_attribute("empty", [], attr_type=AttributeProto.STRINGS) self.assertEqual(attr.type, AttributeProto.STRINGS) self.assertEqual(len(attr.strings), 0) self.assertRaises(ValueError, helper.make_attribute, "empty", []) def test_is_attr_legal(self) -> None: # no name, no field attr = AttributeProto() self.assertRaises(checker.ValidationError, checker.check_attribute, attr) # name, but no field attr = AttributeProto() attr.name = "test" self.assertRaises(checker.ValidationError, checker.check_attribute, attr) # name, with two fields attr = AttributeProto() attr.name = "test" attr.f = 1.0 attr.i = 2 self.assertRaises(checker.ValidationError, checker.check_attribute, attr) def test_is_attr_legal_verbose(self) -> None: def _set( attr: AttributeProto, type_: AttributeProto.AttributeType, var: str, value: Any, ) -> None: setattr(attr, var, value) attr.type = type_ def _extend( attr: AttributeProto, type_: AttributeProto.AttributeType, var: List[Any], value: Any, ) -> None: var.extend(value) attr.type = type_ SET_ATTR = [ (lambda attr: _set(attr, AttributeProto.FLOAT, "f", 1.0)), (lambda attr: _set(attr, AttributeProto.INT, "i", 1)), (lambda attr: _set(attr, AttributeProto.STRING, "s", b"str")), ( lambda attr: _extend( attr, AttributeProto.FLOATS, attr.floats, [1.0, 2.0] ) ), (lambda attr: _extend(attr, AttributeProto.INTS, attr.ints, [1, 2])), ( lambda attr: _extend( attr, AttributeProto.STRINGS, attr.strings, [b"a", b"b"] ) ), ] # Randomly set one field, and the result should be legal. for _i in range(100): attr = AttributeProto() attr.name = "test" random.choice(SET_ATTR)(attr) checker.check_attribute(attr) # Randomly set two fields, and then ensure helper function catches it. for _i in range(100): attr = AttributeProto() attr.name = "test" for func in random.sample(SET_ATTR, 2): func(attr) self.assertRaises(checker.ValidationError, checker.check_attribute, attr) class TestHelperNodeFunctions(unittest.TestCase): def test_node_no_arg(self) -> None: self.assertTrue(defs.has("Relu")) node_def = helper.make_node("Relu", ["X"], ["Y"], name="test") self.assertEqual(node_def.op_type, "Relu") self.assertEqual(node_def.name, "test") self.assertEqual(list(node_def.input), ["X"]) self.assertEqual(list(node_def.output), ["Y"]) def test_attr_doc_string(self) -> None: node_def = helper.make_node("Relu", ["X"], ["Y"], name="test", doc_string="doc") self.assertEqual(node_def.doc_string, "doc") def test_node_with_arg(self) -> None: self.assertTrue(defs.has("Relu")) # Note: Relu actually does not need an arg, but let's # test it. node_def = helper.make_node("Relu", ["X"], ["Y"], arg_value=1) self.assertEqual(node_def.op_type, "Relu") self.assertEqual(list(node_def.input), ["X"]) self.assertEqual(list(node_def.output), ["Y"]) self.assertEqual(len(node_def.attribute), 1) self.assertEqual(node_def.attribute[0], helper.make_attribute("arg_value", 1)) def test_node_domain(self) -> None: node_def = helper.make_node( "Relu", ["X"], ["Y"], name="test", doc_string="doc", domain="test.domain" ) self.assertEqual(node_def.domain, "test.domain") def test_graph(self) -> None: node_def1 = helper.make_node("Relu", ["X"], ["Y"]) node_def2 = helper.make_node("Add", ["X", "Y"], ["Z"]) value_info = [helper.make_tensor_value_info("Y", TensorProto.FLOAT, [1, 2])] graph = helper.make_graph( [node_def1, node_def2], "test", [helper.make_tensor_value_info("X", TensorProto.FLOAT, [1, 2])], [helper.make_tensor_value_info("Z", TensorProto.FLOAT, [1, 2])], doc_string=None, value_info=value_info, ) self.assertEqual(graph.name, "test") self.assertEqual(len(graph.node), 2) self.assertEqual(graph.node[0], node_def1) self.assertEqual(graph.node[1], node_def2) self.assertEqual(graph.doc_string, "") self.assertEqual(graph.value_info[0], value_info[0]) def test_graph_docstring(self) -> None: graph = helper.make_graph([], "my graph", [], [], None, "my docs") self.assertEqual(graph.name, "my graph") self.assertEqual(graph.doc_string, "my docs") def test_model(self) -> None: node_def = helper.make_node("Relu", ["X"], ["Y"]) graph_def = helper.make_graph( [node_def], "test", [helper.make_tensor_value_info("X", TensorProto.FLOAT, [1, 2])], [helper.make_tensor_value_info("Y", TensorProto.FLOAT, [1, 2])], ) self.assertRaises(AttributeError, helper.make_model, graph_def, xxx=1) model_def = helper.make_model(graph_def, producer_name="test") self.assertEqual(model_def.producer_name, "test") def test_model_docstring(self) -> None: graph = helper.make_graph([], "my graph", [], []) model_def = helper.make_model(graph, doc_string="test") # models may have their own documentation, but don't have a name # their name is the domain-qualified name of the underlying graph. self.assertFalse(hasattr(model_def, "name")) self.assertEqual(model_def.doc_string, "test") def test_model_metadata_props(self) -> None: graph = helper.make_graph([], "my graph", [], []) model_def = helper.make_model(graph, doc_string="test") helper.set_model_props( model_def, {"Title": "my graph", "Keywords": "test;graph"} ) checker.check_model(model_def) helper.set_model_props( model_def, {"Title": "my graph", "Keywords": "test;graph"} ) checker.check_model(model_def) # helper replaces, so no dupe dupe = model_def.metadata_props.add() dupe.key = "Title" dupe.value = "Other" self.assertRaises(checker.ValidationError, checker.check_model, model_def) def test_model_irversion(self) -> None: def mk_model(opset_versions: List[Tuple[str, int]]) -> ModelProto: graph = helper.make_graph([], "my graph", [], []) return helper.make_model_gen_version( graph, opset_imports=[helper.make_opsetid(*pair) for pair in opset_versions], ) def test(opset_versions: List[Tuple[str, int]], ir_version: int) -> None: model = mk_model(opset_versions) self.assertEqual(model.ir_version, ir_version) # opset version 9 requires minimum ir_version 4 test([("", 9)], 4) test([("", 10)], 5) test([("", 11)], 6) test([("", 12)], 7) test([("", 13)], 7) test([("", 14)], 7) test([("", 15)], 8) test([("", 16)], 8) test([("", 17)], 8) test([("", 18)], 8) test([("", 19)], 9) # standard opset can be referred to using empty-string or "ai.onnx" test([("ai.onnx", 9)], 4) test([("ai.onnx.ml", 2)], 6) test([("ai.onnx.ml", 3)], 8) test([("ai.onnx.training", 1)], 7) # helper should pick *max* IR version required from all opsets specified. test([("", 10), ("ai.onnx.ml", 2)], 6) self.assertRaises(ValueError, mk_model, [("", 100)]) class TestHelperTensorFunctions(unittest.TestCase): def test_make_string_tensor(self) -> None: string_list = [s.encode("utf-8") for s in ["Amy", "Billy", "Cindy", "David"]] tensor = helper.make_tensor( name="test", data_type=TensorProto.STRING, dims=(2, 2), vals=string_list, raw=False, ) self.assertEqual(string_list, list(tensor.string_data)) def test_make_bfloat16_tensor(self) -> None: # numpy doesn't support bf16, so we have to compute the correct result manually np_array = np.array( [ [1.0, 2.0], [3.0, 4.0], [0.099853515625, 0.099365234375], [0.0998535081744, 0.1], [np.nan, np.inf], ], dtype=np.float32, ) np_results = np.array( [ [ struct.unpack("!f", bytes.fromhex("3F800000"))[0], # 1.0 struct.unpack("!f", bytes.fromhex("40000000"))[0], ], # 2.0 [ struct.unpack("!f", bytes.fromhex("40400000"))[0], # 3.0 struct.unpack("!f", bytes.fromhex("40800000"))[0], ], # 4.0 [ struct.unpack("!f", bytes.fromhex("3DCC0000"))[ 0 ], # round-to-nearest-even rounds down (0x8000) struct.unpack("!f", bytes.fromhex("3DCC0000"))[0], ], # round-to-nearest-even rounds up (0x8000) [ struct.unpack("!f", bytes.fromhex("3DCC0000"))[ 0 ], # round-to-nearest-even rounds down (0x7fff) struct.unpack("!f", bytes.fromhex("3DCD0000"))[0], ], # round-to-nearest-even rounds up (0xCCCD) [ struct.unpack("!f", bytes.fromhex("7FC00000"))[0], # NaN struct.unpack("!f", bytes.fromhex("7F800000"))[0], ], # inf ] ) tensor = helper.make_tensor( name="test", data_type=TensorProto.BFLOAT16, dims=np_array.shape, vals=np_array, ) self.assertEqual(tensor.name, "test") np.testing.assert_equal(np_results, numpy_helper.to_array(tensor)) def test_make_float8e4m3fn_tensor(self) -> None: y = helper.make_tensor( "zero_point", TensorProto.FLOAT8E4M3FN, [5], [0, 0.5, 1, 50000, 10.1] ) ynp = numpy_helper.to_array(y) expected = np.array([0, 0.5, 1, 448, 10], dtype=np.float32) np.testing.assert_equal(expected, ynp) def test_make_float8e4m3fnuz_tensor(self) -> None: y = helper.make_tensor( "zero_point", TensorProto.FLOAT8E4M3FNUZ, [5], [0, 0.5, 1, 50000, 10.1] ) ynp = numpy_helper.to_array(y) expected = np.array([0, 0.5, 1, 240, 10], dtype=np.float32) np.testing.assert_equal(expected, ynp) def test_make_float8e5m2_tensor(self) -> None: y = helper.make_tensor( "zero_point", TensorProto.FLOAT8E5M2, [5], [0, 0.5, 1, 50000, 96] ) ynp = numpy_helper.to_array(y) expected = np.array([0, 0.5, 1, 49152, 96], dtype=np.float32) np.testing.assert_equal(expected, ynp) def test_make_float8e5m2fnuz_tensor(self) -> None: y = helper.make_tensor( "zero_point", TensorProto.FLOAT8E5M2FNUZ, [5], [0, 0.5, 1, 50000, 96] ) ynp = numpy_helper.to_array(y) expected = np.array([0, 0.5, 1, 49152, 96], dtype=np.float32) np.testing.assert_equal(expected, ynp) def test_make_bfloat16_tensor_raw(self) -> None: # numpy doesn't support bf16, so we have to compute the correct result manually np_array = np.array( [ [1.0, 2.0], [3.0, 4.0], [0.099853515625, 0.099365234375], [0.0998535081744, 0.1], [np.nan, np.inf], ], dtype=np.float32, ) np_results = np.array( [ [ struct.unpack("!f", bytes.fromhex("3F800000"))[0], # 1.0 struct.unpack("!f", bytes.fromhex("40000000"))[0], ], # 2.0 [ struct.unpack("!f", bytes.fromhex("40400000"))[0], # 3.0 struct.unpack("!f", bytes.fromhex("40800000"))[0], ], # 4.0 [ struct.unpack("!f", bytes.fromhex("3DCC0000"))[0], # truncated struct.unpack("!f", bytes.fromhex("3DCB0000"))[0], ], # truncated [ struct.unpack("!f", bytes.fromhex("3DCC0000"))[0], # truncated struct.unpack("!f", bytes.fromhex("3DCC0000"))[0], ], # truncated [ struct.unpack("!f", bytes.fromhex("7FC00000"))[0], # NaN struct.unpack("!f", bytes.fromhex("7F800000"))[0], ], # inf ] ) # write out 16-bit of fp32 to create bf16 using truncation, no rounding def truncate(x): return x >> 16 values_as_ints = np_array.astype(np.float32).view(np.uint32).flatten() packed_values = truncate(values_as_ints).astype(np.uint16).tobytes() tensor = helper.make_tensor( name="test", data_type=TensorProto.BFLOAT16, dims=np_array.shape, vals=packed_values, raw=True, ) self.assertEqual(tensor.name, "test") np.testing.assert_equal(np_results, numpy_helper.to_array(tensor)) def test_make_float8e4m3fn_tensor_raw(self) -> None: expected = np.array([0, 0.5, 1, 448, 10], dtype=np.float32) f8 = np.array( [helper.float32_to_float8e4m3(x) for x in expected], dtype=np.uint8 ) packed_values = f8.tobytes() y = helper.make_tensor( name="test", data_type=TensorProto.FLOAT8E4M3FN, dims=list(expected.shape), vals=packed_values, raw=True, ) ynp = numpy_helper.to_array(y) np.testing.assert_equal(expected, ynp) def test_make_float8e4m3fnuz_tensor_raw(self) -> None: expected = np.array([0, 0.5, 1, 240, 10], dtype=np.float32) f8 = np.array( [helper.float32_to_float8e4m3(x, uz=True) for x in expected], dtype=np.uint8 ) packed_values = f8.tobytes() y = helper.make_tensor( name="test", data_type=TensorProto.FLOAT8E4M3FNUZ, dims=list(expected.shape), vals=packed_values, raw=True, ) ynp = numpy_helper.to_array(y) np.testing.assert_equal(expected, ynp) def test_make_float8e5m2_tensor_raw(self) -> None: expected = np.array([0, 0.5, 1, 49152, 10], dtype=np.float32) f8 = np.array( [helper.float32_to_float8e5m2(x) for x in expected], dtype=np.uint8 ) packed_values = f8.tobytes() y = helper.make_tensor( name="test", data_type=TensorProto.FLOAT8E5M2, dims=list(expected.shape), vals=packed_values, raw=True, ) ynp = numpy_helper.to_array(y) np.testing.assert_equal(expected, ynp) def test_make_float8e5m2fnuz_tensor_raw(self) -> None: expected = np.array([0, 0.5, 1, 49152, 10], dtype=np.float32) f8 = np.array( [helper.float32_to_float8e5m2(x, fn=True, uz=True) for x in expected], dtype=np.uint8, ) packed_values = f8.tobytes() y = helper.make_tensor( name="test", data_type=TensorProto.FLOAT8E5M2FNUZ, dims=list(expected.shape), vals=packed_values, raw=True, ) ynp = numpy_helper.to_array(y) np.testing.assert_equal(expected, ynp) def test_make_sparse_tensor(self) -> None: values = [1.1, 2.2, 3.3, 4.4, 5.5] values_tensor = helper.make_tensor( name="test", data_type=TensorProto.FLOAT, dims=(5,), vals=values ) indices = [1, 3, 5, 7, 9] indices_tensor = helper.make_tensor( name="test_indices", data_type=TensorProto.INT64, dims=(5,), vals=indices ) dense_shape = [10] sparse = helper.make_sparse_tensor(values_tensor, indices_tensor, dense_shape) self.assertEqual(sparse.values, values_tensor) self.assertEqual(sparse.indices, indices_tensor) self.assertEqual(sparse.dims, dense_shape) def test_make_tensor_value_info(self) -> None: vi = helper.make_tensor_value_info("X", TensorProto.FLOAT, (2, 4)) checker.check_value_info(vi) # scalar value vi = helper.make_tensor_value_info("Y", TensorProto.FLOAT, ()) checker.check_value_info(vi) def test_make_sparse_tensor_value_info(self) -> None: vi = helper.make_sparse_tensor_value_info("X", TensorProto.FLOAT, (2, 3)) checker.check_value_info(vi) # scalar value vi = helper.make_sparse_tensor_value_info("Y", TensorProto.FLOAT, ()) checker.check_value_info(vi) class TestHelperOptionalAndSequenceFunctions(unittest.TestCase): def test_make_optional(self) -> None: values = [1.1, 2.2, 3.3, 4.4, 5.5] values_tensor = helper.make_tensor( name="test", data_type=TensorProto.FLOAT, dims=(5,), vals=values ) optional = helper.make_optional( name="test", elem_type=OptionalProto.TENSOR, value=values_tensor ) self.assertEqual(optional.name, "test") self.assertEqual(optional.elem_type, OptionalProto.TENSOR) self.assertEqual(optional.tensor_value, values_tensor) # Test Sequence values_sequence = helper.make_sequence( name="test", elem_type=SequenceProto.TENSOR, values=[values_tensor, values_tensor], ) optional = helper.make_optional( name="test", elem_type=OptionalProto.SEQUENCE, value=values_sequence ) self.assertEqual(optional.name, "test") self.assertEqual(optional.elem_type, OptionalProto.SEQUENCE) self.assertEqual(optional.sequence_value, values_sequence) # Test None optional_none = helper.make_optional( name="test", elem_type=OptionalProto.UNDEFINED, value=None ) self.assertEqual(optional_none.name, "test") self.assertEqual(optional_none.elem_type, OptionalProto.UNDEFINED) self.assertFalse(optional_none.HasField("tensor_value")) def test_make_optional_value_info(self) -> None: tensor_type_proto = helper.make_tensor_type_proto(elem_type=2, shape=[5]) tensor_val_into = helper.make_value_info( name="test", type_proto=tensor_type_proto ) optional_type_proto = helper.make_optional_type_proto(tensor_type_proto) optional_val_info = helper.make_value_info( name="test", type_proto=optional_type_proto ) self.assertEqual(optional_val_info.name, "test") self.assertTrue(optional_val_info.type.optional_type) self.assertEqual( optional_val_info.type.optional_type.elem_type, tensor_val_into.type ) # Test Sequence sequence_type_proto = helper.make_sequence_type_proto(tensor_type_proto) optional_type_proto = helper.make_optional_type_proto(sequence_type_proto) optional_val_info = helper.make_value_info( name="test", type_proto=optional_type_proto ) self.assertEqual(optional_val_info.name, "test") self.assertTrue(optional_val_info.type.optional_type) sequence_value_info = helper.make_value_info( name="test", type_proto=tensor_type_proto ) self.assertEqual( optional_val_info.type.optional_type.elem_type.sequence_type.elem_type, sequence_value_info.type, ) def test_make_seuence_value_info(self) -> None: tensor_type_proto = helper.make_tensor_type_proto(elem_type=2, shape=None) sequence_type_proto = helper.make_sequence_type_proto(tensor_type_proto) sequence_val_info = helper.make_value_info( name="test", type_proto=sequence_type_proto ) sequence_val_info_prim = helper.make_tensor_sequence_value_info( name="test", elem_type=2, shape=None ) self.assertEqual(sequence_val_info, sequence_val_info_prim) class TestPrintableGraph(unittest.TestCase): def test_initializer_with_matching_graph_input(self) -> None: add = helper.make_node("Add", ["X", "Y_Initializer"], ["Z"]) value_info = [helper.make_tensor_value_info("Y", TensorProto.FLOAT, [1])] graph = helper.make_graph( [add], "test", [ helper.make_tensor_value_info("X", TensorProto.FLOAT, [1]), helper.make_tensor_value_info("Y_Initializer", TensorProto.FLOAT, [1]), ], # inputs [helper.make_tensor_value_info("Z", TensorProto.FLOAT, [1])], # outputs [ helper.make_tensor("Y_Initializer", TensorProto.FLOAT, [1], [1]) ], # initializers doc_string=None, value_info=value_info, ) graph_str = helper.printable_graph(graph) self.assertTrue( """) optional inputs with matching initializers ( %Y_Initializer[FLOAT, 1]""" in graph_str, graph_str, ) def test_initializer_no_matching_graph_input(self) -> None: add = helper.make_node("Add", ["X", "Y_Initializer"], ["Z"]) value_info = [helper.make_tensor_value_info("Y", TensorProto.FLOAT, [1])] graph = helper.make_graph( [add], "test", [helper.make_tensor_value_info("X", TensorProto.FLOAT, [1])], # inputs [helper.make_tensor_value_info("Z", TensorProto.FLOAT, [1])], # outputs [ helper.make_tensor("Y_Initializer", TensorProto.FLOAT, [1], [1]) ], # initializers doc_string=None, value_info=value_info, ) graph_str = helper.printable_graph(graph) self.assertTrue( """) initializers ( %Y_Initializer[FLOAT, 1]""" in graph_str, graph_str, ) @pytest.mark.parametrize( "tensor_dtype", [ t for t in helper.get_all_tensor_dtypes() if t not in { TensorProto.BFLOAT16, TensorProto.FLOAT8E4M3FN, TensorProto.FLOAT8E4M3FNUZ, TensorProto.FLOAT8E5M2, TensorProto.FLOAT8E5M2FNUZ, TensorProto.STRING, TensorProto.COMPLEX64, TensorProto.COMPLEX128, } ], ids=lambda tensor_dtype: helper.tensor_dtype_to_string(tensor_dtype), ) def test_make_tensor_vals(tensor_dtype: int) -> None: np_array = np.random.randn(2, 3).astype( helper.tensor_dtype_to_np_dtype(tensor_dtype) ) tensor = helper.make_tensor( name="test", data_type=tensor_dtype, dims=np_array.shape, vals=np_array ) np.testing.assert_equal(np_array, numpy_helper.to_array(tensor)) @pytest.mark.parametrize( "tensor_dtype", [ t for t in helper.get_all_tensor_dtypes() if t not in { TensorProto.BFLOAT16, TensorProto.STRING, TensorProto.FLOAT8E4M3FN, TensorProto.FLOAT8E4M3FNUZ, TensorProto.FLOAT8E5M2, TensorProto.FLOAT8E5M2FNUZ, } ], ids=lambda tensor_dtype: helper.tensor_dtype_to_string(tensor_dtype), ) def test_make_tensor_raw(tensor_dtype: int) -> None: np_array = np.random.randn(2, 3).astype( helper.tensor_dtype_to_np_dtype(tensor_dtype) ) tensor = helper.make_tensor( name="test", data_type=tensor_dtype, dims=np_array.shape, vals=np_array.tobytes(), raw=True, ) np.testing.assert_equal(np_array, numpy_helper.to_array(tensor)) class TestHelperMappingFunctions(unittest.TestCase): # TODO (#4554): remove these tests about catching warnings after the deprecation period # Test these new functions should not raise any deprecation warnings @pytest.mark.filterwarnings("error::DeprecationWarning") def test_tensor_dtype_to_np_dtype_not_throw_warning(self) -> None: _ = helper.tensor_dtype_to_np_dtype(TensorProto.FLOAT) @pytest.mark.filterwarnings("error::DeprecationWarning") def test_tensor_dtype_to_storage_tensor_dtype_not_throw_warning(self) -> None: _ = helper.tensor_dtype_to_storage_tensor_dtype(TensorProto.FLOAT) @pytest.mark.filterwarnings("error::DeprecationWarning") def test_tensor_dtype_to_field_not_throw_warning(self) -> None: _ = helper.tensor_dtype_to_field(TensorProto.FLOAT) @pytest.mark.filterwarnings("error::DeprecationWarning") def test_np_dtype_to_tensor_dtype_not_throw_warning(self) -> None: _ = helper.np_dtype_to_tensor_dtype(np.dtype("float32")) def test_tensor_dtype_to_np_dtype_bfloat16(self) -> None: self.assertEqual( helper.tensor_dtype_to_np_dtype(TensorProto.BFLOAT16), np.dtype("float32") ) def test_tensor_dtype_to_storage_tensor_dtype_bfloat16(self) -> None: self.assertEqual( helper.tensor_dtype_to_storage_tensor_dtype(TensorProto.BFLOAT16), TensorProto.UINT16, ) # BFloat16 tensor uses TensorProto.UINT16 as storage type; # And the field name for TensorProto.UINT16 is int32_data def test_tensor_dtype_to_field_bfloat16(self) -> None: self.assertEqual( helper.tensor_dtype_to_field(TensorProto.BFLOAT16), "int32_data" ) if __name__ == "__main__": unittest.main() pytest.main([__file__])
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58,815
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_sigmoid.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.ops._op import OpRunUnaryNum def sigmoid(x): # type: ignore if x > 0: return 1 / (1 + np.exp(-x)) return np.exp(x) / (1 + np.exp(x)) class Sigmoid(OpRunUnaryNum): def __init__(self, onnx_node, run_params): # type: ignore OpRunUnaryNum.__init__(self, onnx_node, run_params) self.vf = np.vectorize(sigmoid) def _run(self, X): # type: ignore if len(X.shape) == 0: return (sigmoid(X).astype(X.dtype),) if X.size == 0: return (X,) return (self.vf(X).astype(X.dtype),)
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58,816
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_pool_common.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import itertools import math from typing import Sequence, Tuple, Union import numpy as np from onnx.reference.op_run import OpRun def get_pad_shape( auto_pad: str, input_spatial_shape: Sequence[int], kernel_spatial_shape: Sequence[int], strides_spatial: Sequence[int], output_spatial_shape: Sequence[int], ) -> Sequence[int]: spatial_dims = len(input_spatial_shape) pad_shape = [0] * spatial_dims strides_spatial = strides_spatial or [1] * spatial_dims if auto_pad in ("SAME_UPPER", "SAME_LOWER"): for i in range(spatial_dims): pad_shape[i] = ( (output_spatial_shape[i] - 1) * strides_spatial[i] + kernel_spatial_shape[i] - input_spatial_shape[i] ) elif auto_pad == "VALID": pass return pad_shape def get_pad_with_auto_pad(auto_pad: str, pad_shape: Sequence[int]) -> Sequence[int]: spatial_dims = len(pad_shape) if auto_pad == "SAME_UPPER": pads = [pad_shape[i] // 2 for i in range(spatial_dims)] + [ pad_shape[i] - pad_shape[i] // 2 for i in range(spatial_dims) ] elif auto_pad == "SAME_LOWER": pads = [pad_shape[i] - pad_shape[i] // 2 for i in range(spatial_dims)] + [ pad_shape[i] // 2 for i in range(spatial_dims) ] else: pads = [0] * spatial_dims * 2 # no padding return pads def get_output_shape_explicit_padding( pads: Sequence[int], input_spatial_shape: Sequence[int], kernel_spatial_shape: Sequence[int], strides_spatial: Sequence[int], dilations: Union[Sequence[int], None] = None, ceil_mode: bool = False, ) -> Tuple[Sequence[int], Sequence[int]]: """ compute output shape according to: https://pytorch.org/docs/stable/generated/torch.nn.MaxPool1d.html?highlight=max+pool#torch.nn.MaxPool1d Pads are used to calculate output shape. Use output shape in turn to calculate the actual pads that are used to pad the input tensor so that computation in pool() will not cause out of bound error. Here is the detail. Thinking kernel as a sliding window, its size: sw = dilation * (kernel - 1) + 1 l_out = (l_in + pad[0] + pad[1] - sw) / stride + 1 # (ceiled if ceil_mode is True) l_in_required = (l_out - 1) * stride + sw l_in_required is used to for computation in pool() which may be larger than padded l_in, because of ceiling. as an example, l_in = 3, kernel = 2, stride = 2, dilation = 1, pad = [0, 0], then sw = dilation * (kernel - 1) + 1 = 1 * (2 - 1) + 1 = 2 l_out = ceil((l_in + pad[0] + pad[1] - sw) / stride + 1) = ceil((3 + 0 + 0 - 1 * (2 - 1) - 1) / 2 + 1) = 2 l_in_required = (l_out - 1) * stride + sw = (2 - 1) * 2 + 2 = 4 l_in_required (= 4) is not equal to l_in (= 3), so we need to pad the input tensor to l_in_required to make sure that the sliding window does not go out-of-bound w.r.t. input tensor. Otherwise pool() will fail. """ output_spatial_shape = [0] * len(input_spatial_shape) pads = pads or [0] * len(input_spatial_shape) * 2 strides_spatial = strides_spatial or [1] * len(input_spatial_shape) dims = len(input_spatial_shape) if dilations is None: dilations = np.ones([dims], dtype=np.int64) for dim in range(dims): dim_size = ( input_spatial_shape[dim] + pads[dim] + pads[dims + dim] - dilations[dim] * (kernel_spatial_shape[dim] - 1) - 1 ) / strides_spatial[dim] + 1 if ceil_mode: output_spatial_shape[dim] = int(np.ceil(dim_size)) else: output_spatial_shape[dim] = int(np.floor(dim_size)) pads_spatial_shape_new = pads[:] for dim in range(dims): sliding_window_size = (kernel_spatial_shape[dim] - 1) * dilations[dim] + 1 actual_padded_input_size = (output_spatial_shape[dim] - 1) * strides_spatial[ dim ] + sliding_window_size extra_pad = ( actual_padded_input_size - input_spatial_shape[dim] - pads[dim] - pads[dims + dim] ) if extra_pad > 0: pads_spatial_shape_new[dim] += extra_pad // 2 pads_spatial_shape_new[dims + dim] += extra_pad - extra_pad // 2 return output_spatial_shape, pads_spatial_shape_new def get_output_shape_auto_pad( auto_pad: str, input_spatial_shape: Sequence[int], kernel_spatial_shape: Sequence[int], strides_spatial: Sequence[int], ) -> Sequence[int]: """ https://www.tensorflow.org/api_docs/python/tf/keras/layers/AveragePooling2D output_shape = math.floor((input_shape - 1) / strides) + 1 (SAME) output_shape = math.floor((input_shape - pool_size) / strides) + 1 (VALID) IMPORTANT: this function assumes ceil_mode is False. In tenforflow, ceil_mode is always False. However, ONNX spec allow ceil_mode to be True because ORT does handle the case. """ strides_spatial = strides_spatial or [1] * len(input_spatial_shape) out_shape = [0] * len(input_spatial_shape) for i in range( # pylint: disable=consider-using-enumerate len(input_spatial_shape) ): if auto_pad in ("SAME_UPPER", "SAME_LOWER"): out_shape[i] = ( math.floor((input_spatial_shape[i] - 1) / strides_spatial[i]) + 1 ) elif auto_pad == "VALID": out_shape[i] = ( math.floor( (input_spatial_shape[i] - kernel_spatial_shape[i]) / strides_spatial[i] ) + 1 ) # if auto_pad is NOTSET, explicite padding should be used else: raise ValueError( "auto_pad can only be NOTSET, SAME_UPPER, SAME_LOWER, or VALID" ) # pads = get_pad_shape(auto_pad, input_spatial_shape, kernel_shape, strides_spatial, out_shape) return out_shape def lp_pool(x: np.array, p: int) -> float: y = 0 for v in np.nditer(x): y += abs(v) ** p return y ** (1.0 / p) def pool( padded: np.ndarray, x_shape: Sequence[int], kernel: Sequence[int], strides: Sequence[int], out_shape: Sequence[int], pooling_type: str, pads: Union[Sequence[int], None] = None, dilations: Union[Sequence[int], None] = None, count_include_pad: int = 0, p: int = 1, ) -> np.ndarray: """ this function is used to calculate the pooling result of a padded tensor padded: the padded tensor x_shape: the shape of the original tensor in [N, C, *spatial_shape] kernel: the pooling kernel strides: the strides out_shape: the shape of the output tensor pooling_type: the pooling type, can be "AVG", "LPPOOL", or "MAX" pads: the padding in an order of head_pad_1, head_pad_2, ..., tail_pad_1, tail_pad_2, ... dilations: the dilation count_include_pad: whether to include the padding in the calculation of average and lp pooling p: the p value for lp pooling """ spatial_size = len(x_shape) - 2 y = np.zeros([x_shape[0], x_shape[1], *list(out_shape)], dtype=padded.dtype) if dilations is None: dilations = np.ones([spatial_size], dtype=np.int64) if pads is None: pads = np.zeros([spatial_size * 2], dtype=np.int64) elif len(pads) == 1: pads = pads * spatial_size * 2 strides = strides or [1] * spatial_size def lp_pool_p(x): return lp_pool(x, p) for shape in itertools.product( range(x_shape[0]), range(x_shape[1]), *[ range( int( ( x_shape[i + 2] + pads[i] + pads[i + spatial_size] - (1 + (kernel[i] - 1) * dilations[i]) ) / strides[i] + 1 ) ) for i in range(spatial_size) ], ): window = padded[shape[0], shape[1]] window_vals = np.array( [ window[i] for i in list( itertools.product( *[ range( strides[i] * shape[i + 2], strides[i] * shape[i + 2] + (1 + (kernel[i] - 1) * dilations[i]), dilations[i], ) for i in range(spatial_size) ] ) ) ] ) if pooling_type == "AVG": f = np.average elif pooling_type == "MAX": f = np.max elif pooling_type == "LPPOOL": f = lp_pool_p else: raise NotImplementedError( f"Pooling type {pooling_type} does not support. Should be AVG, MAX" ) if count_include_pad == 1 and (pooling_type in {"AVG", "LPPOOL"}): y[shape] = f(window_vals) else: y[shape] = f(window_vals[np.where(~np.isnan(window_vals))]) return y class CommonPool(OpRun): def _run( # pylint: disable=arguments-differ self, pooling_type, count_include_pad, x, auto_pad=None, ceil_mode=None, dilations=None, kernel_shape=None, pads=None, strides=None, p=None, ): x_shape = np.shape(x) pading_value = np.nan if pooling_type == "MAX" or count_include_pad == 0 else 0 if auto_pad in ["SAME_UPPER", "SAME_LOWER", "VALID"]: assert ( ceil_mode is None or ceil_mode == 0 ), "ceil_mode is not supported with auto_pad" out_shape = get_output_shape_auto_pad( auto_pad, x.shape[2:], kernel_shape, strides ) pads_shape = get_pad_shape( auto_pad, x_shape[2:], kernel_shape, strides, out_shape ) pads = get_pad_with_auto_pad(auto_pad, pads_shape) n_dims = len(pads) // 2 pads_np = [(pads[i], pads[i + n_dims]) for i in range(n_dims)] padded = np.pad( x, ((0, 0), (0, 0), *pads_np), mode="constant", constant_values=pading_value, ) y = pool( padded, x_shape, kernel_shape, strides, out_shape, pooling_type, pads, dilations, count_include_pad, p, ) return (y,) else: out_shape, pads = get_output_shape_explicit_padding( pads, x_shape[2:], kernel_shape, strides, dilations, ceil_mode ) # convert pads from [x1_begin, x2_begin,...,x1_end, x2_end,...] to [(x1_begin, x1_end), (x2_begin, x2_end),...] n_dims = len(pads) // 2 pads_np = [(pads[i], pads[i + n_dims]) for i in range(n_dims)] padded = np.pad( x, ((0, 0), (0, 0), *pads_np), mode="constant", constant_values=pading_value, ) y = pool( padded, x_shape, kernel_shape, strides, out_shape, pooling_type, pads, dilations, count_include_pad, p, ) return (y,)
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58,817
onnx/onnx
refs/heads/main
/onnx/test/test_backend_test.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 import itertools import os import platform import unittest from typing import Any, Optional, Sequence, Tuple import numpy import onnx.backend.base import onnx.backend.test import onnx.shape_inference import onnx.version_converter from onnx import ModelProto, NodeProto, TensorProto from onnx.backend.base import Device, DeviceType from onnx.backend.test.runner import BackendIsNotSupposedToImplementIt # The following just executes the fake backend through the backend test # infrastructure. Since we don't have full reference implementation of all ops # in ONNX repo, it's impossible to produce the proper results. However, we can # run 'checker' (that's what base Backend class does) to verify that all tests # fed are actually well-formed ONNX models. # # If everything is fine, all the tests would be marked as "skipped". # # We don't enable report in this test because the report collection logic itself # fails when models are mal-formed. class DummyBackend(onnx.backend.base.Backend): @classmethod def prepare( cls, model: ModelProto, device: str = "CPU", **kwargs: Any ) -> Optional[onnx.backend.base.BackendRep]: super().prepare(model, device, **kwargs) # test strict shape inference onnx.checker.check_model(model) model = onnx.shape_inference.infer_shapes( model, check_type=True, strict_mode=True ) value_infos = { vi.name: vi for vi in itertools.chain(model.graph.value_info, model.graph.output) } if do_enforce_test_coverage_safelist(model): for node in model.graph.node: for i, output in enumerate(node.output): if node.op_type == "Dropout" and i != 0: continue assert output in value_infos tt = value_infos[output].type.tensor_type assert tt.elem_type != TensorProto.UNDEFINED for dim in tt.shape.dim: assert dim.WhichOneof("value") == "dim_value" raise BackendIsNotSupposedToImplementIt( "This is the dummy backend test that doesn't verify the results but does run the checker" ) @classmethod def run_node( cls, node: NodeProto, inputs: Any, device: str = "CPU", outputs_info: Optional[Sequence[Tuple[numpy.dtype, Tuple[int, ...]]]] = None, **kwargs: Any, ) -> Optional[Tuple[Any, ...]]: super().run_node(node, inputs, device=device, outputs_info=outputs_info) raise BackendIsNotSupposedToImplementIt( "This is the dummy backend test that doesn't verify the results but does run the checker" ) @classmethod def supports_device(cls, device: str) -> bool: d = Device(device) if d.type == DeviceType.CPU: return True return False test_coverage_safelist = { "bvlc_alexnet", "densenet121", "inception_v1", "inception_v2", "resnet50", "shufflenet", "SingleRelu", "squeezenet_old", "vgg19", "zfnet", } def do_enforce_test_coverage_safelist(model: ModelProto) -> bool: if model.graph.name not in test_coverage_safelist: return False return all(node.op_type not in {"RNN", "LSTM", "GRU"} for node in model.graph.node) backend_test = onnx.backend.test.BackendTest(DummyBackend, __name__) if os.getenv("APPVEYOR"): backend_test.exclude(r"(test_vgg19|test_zfnet)") if platform.architecture()[0] == "32bit": backend_test.exclude(r"(test_vgg19|test_zfnet|test_bvlc_alexnet)") # Needs investigation on onnxruntime. backend_test.exclude("test_dequantizelinear_e4m3fn_float16") # import all test cases at global scope to make them visible to python.unittest globals().update(backend_test.test_cases) if __name__ == "__main__": unittest.main()
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58,818
onnx/onnx
refs/heads/main
/onnx/backend/test/case/__init__.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 import sys from typing import Dict, List, Tuple from onnx.backend.test.case.base import Snippets from onnx.backend.test.case.utils import import_recursive def collect_snippets() -> Dict[str, List[Tuple[str, str]]]: import_recursive(sys.modules[__name__]) return Snippets
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58,819
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_instance_normalization.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,R0914,W0221 import numpy as np from onnx.reference.op_run import OpRun class InstanceNormalization(OpRun): def _run(self, x, s, bias, epsilon=None): # type: ignore dims_x = len(x.shape) axis = tuple(range(2, dims_x)) mean = np.mean(x, axis=axis, keepdims=True) var = np.var(x, axis=axis, keepdims=True) dim_ones = (1,) * (dims_x - 2) s = s.reshape(-1, *dim_ones) bias = bias.reshape(-1, *dim_ones) y = s * (x - mean) / np.sqrt(var + epsilon) + bias return (y.astype(x.dtype),)
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58,820
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/sequence_map.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class SequenceMap(Base): @staticmethod def export_sequence_map_identity_1_sequence(): # type: () -> None body = onnx.helper.make_graph( [onnx.helper.make_node("Identity", ["in0"], ["out0"])], "seq_map_body", [onnx.helper.make_tensor_value_info("in0", onnx.TensorProto.FLOAT, ["N"])], [onnx.helper.make_tensor_value_info("out0", onnx.TensorProto.FLOAT, ["M"])], ) node = onnx.helper.make_node( "SequenceMap", inputs=["x"], outputs=["y"], body=body ) x = [np.random.uniform(0.0, 1.0, 10).astype(np.float32) for _ in range(3)] y = x input_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), ] output_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), ] expect( node, inputs=[x], outputs=[y], input_type_protos=input_type_protos, output_type_protos=output_type_protos, name="test_sequence_map_identity_1_sequence", ) @staticmethod def export_sequence_map_identity_2_sequences(): # type: () -> None body = onnx.helper.make_graph( [ onnx.helper.make_node("Identity", ["in0"], ["out0"]), onnx.helper.make_node("Identity", ["in1"], ["out1"]), ], "seq_map_body", [ onnx.helper.make_tensor_value_info( "in0", onnx.TensorProto.FLOAT, ["N"] ), onnx.helper.make_tensor_value_info( "in1", onnx.TensorProto.FLOAT, ["M"] ), ], [ onnx.helper.make_tensor_value_info( "out0", onnx.TensorProto.FLOAT, ["N"] ), onnx.helper.make_tensor_value_info( "out1", onnx.TensorProto.FLOAT, ["M"] ), ], ) node = onnx.helper.make_node( "SequenceMap", inputs=["x0", "x1"], outputs=["y0", "y1"], body=body ) x0 = [ np.random.uniform(0.0, 1.0, np.random.randint(1, 10)).astype(np.float32) for _ in range(3) ] x1 = [ np.random.uniform(0.0, 1.0, np.random.randint(1, 10)).astype(np.float32) for _ in range(3) ] y0 = x0 y1 = x1 input_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["M"]) ), ] output_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["M"]) ), ] expect( node, inputs=[x0, x1], outputs=[y0, y1], input_type_protos=input_type_protos, output_type_protos=output_type_protos, name="test_sequence_map_identity_2_sequences", ) @staticmethod def export_sequence_map_identity_1_sequence_1_tensor(): # type: () -> None body = onnx.helper.make_graph( [ onnx.helper.make_node("Identity", ["in0"], ["out0"]), onnx.helper.make_node("Identity", ["in1"], ["out1"]), ], "seq_map_body", [ onnx.helper.make_tensor_value_info( "in0", onnx.TensorProto.FLOAT, ["N"] ), onnx.helper.make_tensor_value_info( "in1", onnx.TensorProto.FLOAT, ["M"] ), ], [ onnx.helper.make_tensor_value_info( "out0", onnx.TensorProto.FLOAT, ["N"] ), onnx.helper.make_tensor_value_info( "out1", onnx.TensorProto.FLOAT, ["M"] ), ], ) node = onnx.helper.make_node( "SequenceMap", inputs=["x0", "x1"], outputs=["y0", "y1"], body=body ) x0 = [ np.random.uniform(0.0, 1.0, np.random.randint(1, 10)).astype(np.float32) for _ in range(3) ] x1 = np.random.uniform(0.0, 1.0, np.random.randint(1, 10)).astype(np.float32) y0 = x0 y1 = [x1 for _ in range(3)] input_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["M"]), ] output_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["M"]) ), ] expect( node, inputs=[x0, x1], outputs=[y0, y1], input_type_protos=input_type_protos, output_type_protos=output_type_protos, name="test_sequence_map_identity_1_sequence_1_tensor", ) @staticmethod def export_sequence_map_add_2_sequences(): # type: () -> None body = onnx.helper.make_graph( [onnx.helper.make_node("Add", ["in0", "in1"], ["out0"])], "seq_map_body", [ onnx.helper.make_tensor_value_info( "in0", onnx.TensorProto.FLOAT, ["N"] ), onnx.helper.make_tensor_value_info( "in1", onnx.TensorProto.FLOAT, ["N"] ), ], [onnx.helper.make_tensor_value_info("out0", onnx.TensorProto.FLOAT, ["N"])], ) node = onnx.helper.make_node( "SequenceMap", inputs=["x0", "x1"], outputs=["y0"], body=body ) N = [np.random.randint(1, 10) for _ in range(3)] x0 = [np.random.uniform(0.0, 1.0, N[k]).astype(np.float32) for k in range(3)] x1 = [np.random.uniform(0.0, 1.0, N[k]).astype(np.float32) for k in range(3)] y0 = [x0[k] + x1[k] for k in range(3)] input_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), ] output_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), ] expect( node, inputs=[x0, x1], outputs=[y0], input_type_protos=input_type_protos, output_type_protos=output_type_protos, name="test_sequence_map_add_2_sequences", ) @staticmethod def export_sequence_map_add_1_sequence_1_tensor(): # type: () -> None body = onnx.helper.make_graph( [onnx.helper.make_node("Add", ["in0", "in1"], ["out0"])], "seq_map_body", [ onnx.helper.make_tensor_value_info( "in0", onnx.TensorProto.FLOAT, ["N"] ), onnx.helper.make_tensor_value_info( "in1", onnx.TensorProto.FLOAT, ["N"] ), ], [onnx.helper.make_tensor_value_info("out0", onnx.TensorProto.FLOAT, ["N"])], ) node = onnx.helper.make_node( "SequenceMap", inputs=["x0", "x1"], outputs=["y0"], body=body ) x0 = [np.random.uniform(0.0, 1.0, 10).astype(np.float32) for k in range(3)] x1 = np.random.uniform(0.0, 1.0, 10).astype(np.float32) y0 = [x0[i] + x1 for i in range(3)] input_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]), ] output_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.FLOAT, ["N"]) ), ] expect( node, inputs=[x0, x1], outputs=[y0], input_type_protos=input_type_protos, output_type_protos=output_type_protos, name="test_sequence_map_add_1_sequence_1_tensor", ) @staticmethod def export_sequence_map_extract_shapes(): # type: () -> None body = onnx.helper.make_graph( [onnx.helper.make_node("Shape", ["x"], ["shape"])], "seq_map_body", [ onnx.helper.make_tensor_value_info( "x", onnx.TensorProto.FLOAT, ["H", "W", "C"] ) ], [onnx.helper.make_tensor_value_info("shape", onnx.TensorProto.INT64, [3])], ) node = onnx.helper.make_node( "SequenceMap", inputs=["in_seq"], outputs=["shapes"], body=body ) shapes = [ np.array([40, 30, 3], dtype=np.int64), np.array([20, 10, 3], dtype=np.int64), np.array([10, 5, 3], dtype=np.int64), ] x0 = [np.zeros(shape, dtype=np.float32) for shape in shapes] input_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto( onnx.TensorProto.FLOAT, ["H", "W", "C"] ) ), ] output_type_protos = [ onnx.helper.make_sequence_type_proto( onnx.helper.make_tensor_type_proto(onnx.TensorProto.INT64, [3]) ), ] expect( node, inputs=[x0], outputs=[shapes], input_type_protos=input_type_protos, output_type_protos=output_type_protos, name="test_sequence_map_extract_shapes", )
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58,821
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/reshape.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect def reshape_reference_implementation( data: np.ndarray, shape: np.ndarray, allowzero: int = 0 ) -> np.ndarray: # replace zeros with corresponding dim size # we need to do this because np.reshape doesn't support 0 by default unless 'allowzero' is set new_shape = np.copy(shape) if allowzero == 0: zeros_index = np.where(shape == 0) new_shape[zeros_index] = np.array(data.shape)[zeros_index] reshaped = np.reshape(data, new_shape) return reshaped class Reshape(Base): @staticmethod def export_reshape() -> None: original_shape = [2, 3, 4] test_cases = { "reordered_all_dims": np.array([4, 2, 3], dtype=np.int64), "reordered_last_dims": np.array([2, 4, 3], dtype=np.int64), "reduced_dims": np.array([2, 12], dtype=np.int64), "extended_dims": np.array([2, 3, 2, 2], dtype=np.int64), "one_dim": np.array([24], dtype=np.int64), "negative_dim": np.array([2, -1, 2], dtype=np.int64), "negative_extended_dims": np.array([-1, 2, 3, 4], dtype=np.int64), "zero_dim": np.array([2, 0, 4, 1], dtype=np.int64), "zero_and_negative_dim": np.array([2, 0, 1, -1], dtype=np.int64), } data = np.random.random_sample(original_shape).astype(np.float32) for test_name, shape in test_cases.items(): node = onnx.helper.make_node( "Reshape", inputs=["data", "shape"], outputs=["reshaped"], ) reshaped = reshape_reference_implementation(data, shape) expect( node, inputs=[data, shape], outputs=[reshaped], name="test_reshape_" + test_name, ) @staticmethod def export_allowzero() -> None: original_shape = [0, 3, 4] test_cases = { "allowzero_reordered": np.array([3, 4, 0], dtype=np.int64), } data = np.random.random_sample(original_shape).astype(np.float32) for test_name, shape in test_cases.items(): node = onnx.helper.make_node( "Reshape", inputs=["data", "shape"], outputs=["reshaped"], allowzero=1, # if allowzero=1, final shape = (3, 4, 0) # if allowzero=0, final shape = (3, 4, 4) ) reshaped = reshape_reference_implementation(data, shape, allowzero=1) expect( node, inputs=[data, shape], outputs=[reshaped], name="test_reshape_" + test_name, )
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