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onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/splittosequence.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class SplitToSequence(Base): @staticmethod def export_with_split_1() -> None: data = np.arange(18).reshape((3, 6)).astype(np.float32) split = np.array(2, dtype=np.int64) node = onnx.helper.make_node( "SplitToSequence", ["data", "split"], ["seq"], axis=1 ) expected_outputs = [ [ np.array([[0.0, 1.0], [6.0, 7.0], [12.0, 13.0]], dtype=np.float32), np.array([[2.0, 3.0], [8.0, 9.0], [14.0, 15.0]], dtype=np.float32), np.array([[4.0, 5.0], [10.0, 11.0], [16.0, 17.0]], dtype=np.float32), ] ] expect( node, inputs=[data, split], outputs=expected_outputs, name="test_split_to_sequence_1", ) @staticmethod def export_with_split_2() -> None: data = np.arange(18).reshape((3, 6)).astype(np.float32) split = np.array([1, 2], dtype=np.int64) node = onnx.helper.make_node( "SplitToSequence", ["data", "split"], ["seq"], axis=0 ) expected_outputs = [ [ data[:1], data[1:], ] ] expect( node, inputs=[data, split], outputs=expected_outputs, name="test_split_to_sequence_2", ) @staticmethod def export_nokeepdims() -> None: data = np.arange(18).reshape((3, 6)).astype(np.float32) node = onnx.helper.make_node( "SplitToSequence", ["data"], ["seq"], axis=1, keepdims=0, ) expected_outputs = [[data[:, i] for i in range(data.shape[1])]] expect( node, inputs=[data], outputs=expected_outputs, name="test_split_to_sequence_nokeepdims", )
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59,123
onnx/onnx
refs/heads/main
/onnx/serialization.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 from __future__ import annotations __all__ = [ "registry", ] import typing from typing import Any, Collection, Optional, Protocol, TypeVar import google.protobuf.message import google.protobuf.text_format import onnx _Proto = TypeVar("_Proto", bound=google.protobuf.message.Message) # Encoding used for serializing and deserializing text files _ENCODING = "utf-8" class ProtoSerializer(Protocol): """A serializer-deserializer to and from in-memory Protocol Buffers representations.""" # Format supported by the serializer. E.g. "protobuf" supported_format: str # File extensions supported by the serializer. E.g. frozenset({".onnx", ".pb"}) # Be careful to include the dot in the file extension. file_extensions: Collection[str] # NOTE: The methods defined are serialize_proto and deserialize_proto and not the # more generic serialize and deserialize to leave space for future protocols # that are defined to serialize/deserialize the ONNX in memory IR. # This way a class can implement both protocols. def serialize_proto(self, proto: _Proto) -> Any: """Serialize a in-memory proto to a serialized data type.""" def deserialize_proto(self, serialized: Any, proto: _Proto) -> _Proto: """Parse a serialized data type into a in-memory proto.""" class _Registry: def __init__(self) -> None: self._serializers: dict[str, ProtoSerializer] = {} # A mapping from file extension to format self._extension_to_format: dict[str, str] = {} def register(self, serializer: ProtoSerializer) -> None: self._serializers[serializer.supported_format] = serializer self._extension_to_format.update( {ext: serializer.supported_format for ext in serializer.file_extensions} ) def get(self, fmt: str) -> ProtoSerializer: """Get a serializer for a format. Args: fmt: The format to get a serializer for. Returns: ProtoSerializer: The serializer for the format. Raises: ValueError: If the format is not supported. """ try: return self._serializers[fmt] except KeyError: raise ValueError( f"Unsupported format: '{fmt}'. Supported formats are: {self._serializers.keys()}" ) from None def get_format_from_file_extension(self, file_extension: str) -> str | None: """Get the corresponding format from a file extension. Args: file_extension: The file extension to get a format for. Returns: The format for the file extension, or None if not found. """ return self._extension_to_format.get(file_extension) class _ProtobufSerializer(ProtoSerializer): """Serialize and deserialize protobuf message.""" supported_format = "protobuf" file_extensions = frozenset({".onnx", ".pb"}) def serialize_proto(self, proto: _Proto) -> bytes: if hasattr(proto, "SerializeToString") and callable(proto.SerializeToString): try: result = proto.SerializeToString() except ValueError as e: if proto.ByteSize() >= onnx.checker.MAXIMUM_PROTOBUF: raise ValueError( "The proto size is larger than the 2 GB limit. " "Please use save_as_external_data to save tensors separately from the model file." ) from e raise return result # type: ignore raise TypeError( f"No SerializeToString method is detected.\ntype is {type(proto)}" ) def deserialize_proto(self, serialized: bytes, proto: _Proto) -> _Proto: if not isinstance(serialized, bytes): raise TypeError( f"Parameter 'serialized' must be bytes, but got type: {type(serialized)}" ) decoded = typing.cast(Optional[int], proto.ParseFromString(serialized)) if decoded is not None and decoded != len(serialized): raise google.protobuf.message.DecodeError( f"Protobuf decoding consumed too few bytes: {decoded} out of {len(serialized)}" ) return proto class _TextProtoSerializer(ProtoSerializer): """Serialize and deserialize text proto.""" supported_format = "textproto" file_extensions = frozenset({".textproto", ".prototxt", ".pbtxt"}) def serialize_proto(self, proto: _Proto) -> bytes: textproto = google.protobuf.text_format.MessageToString(proto) return textproto.encode(_ENCODING) def deserialize_proto(self, serialized: bytes | str, proto: _Proto) -> _Proto: if not isinstance(serialized, (bytes, str)): raise TypeError( f"Parameter 'serialized' must be bytes or str, but got type: {type(serialized)}" ) if isinstance(serialized, bytes): serialized = serialized.decode(_ENCODING) assert isinstance(serialized, str) return google.protobuf.text_format.Parse(serialized, proto) # Register default serializers registry = _Registry() registry.register(_ProtobufSerializer()) registry.register(_TextProtoSerializer())
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59,124
onnx/onnx
refs/heads/main
/onnx/reference/ops/aionnxml/op_svm_classifier.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0911,R0912,R0913,R0914,W0221 import numpy as np from onnx.reference.ops.aionnxml._common_classifier import ( compute_logistic, compute_probit, compute_softmax_zero, logistic, softmax, softmax_zero, ) from onnx.reference.ops.aionnxml._op_run_aionnxml import OpRunAiOnnxMl from onnx.reference.ops.aionnxml.op_svm_helper import SVMCommon def multiclass_probability(k, R): max_iter = max(100, k) Q = np.empty((k, k), dtype=R.dtype) Qp = np.empty((k,), dtype=R.dtype) P = np.empty((k,), dtype=R.dtype) eps = 0.005 / k for t in range(0, k): P[t] = 1.0 / k Q[t, t] = (R[:t, t] ** 2).sum() Q[t, :t] = Q[:t, t] Q[t, t] += (R[t + 1 :, t] ** 2).sum() Q[t, t + 1 :] = -R[t + 1 :, t] @ R[t, t + 1 :] for _ in range(max_iter): # stopping condition, recalculate QP,pQP for numerical accuracy Qp[:] = Q @ P pQp = (P * Qp).sum() max_error = 0 for t in range(0, k): error = np.abs(Qp[t] - pQp) if error > max_error: max_error = error if max_error < eps: break for t in range(k): diff = (-Qp[t] + pQp) / Q[t, t] P[t] += diff pQp = (pQp + diff * (diff * Q[t, t] + 2 * Qp[t])) / (1 + diff) ** 2 P /= 1 + diff Qp[:] = (Qp + diff * Q[t, :]) / (1 + diff) return P def sigmoid_probability(score, proba, probb): # ref: https://github.com/arnaudsj/libsvm/blob/eaaefac5ebd32d0e07902e1ae740e038eaaf0826/svm.cpp#L1818 val = score * proba + probb return 1 - compute_logistic(val) def write_scores(n_classes, scores, post_transform, add_second_class): if n_classes >= 2: if post_transform == "PROBIT": res = [compute_probit(score) for score in scores] return np.array(res, dtype=scores.dtype) if post_transform == "LOGISTIC": return logistic(scores) if post_transform == "SOFTMAX": return softmax(scores) if post_transform == "SOFTMAX_ZERO": return compute_softmax_zero(scores) return scores if n_classes == 1: if post_transform == "PROBIT": return np.array([compute_probit(scores[0])], dtype=scores.dtype) if add_second_class in (0, 1): return np.array([1 - scores[0], scores[0]], dtype=scores.dtype) if add_second_class in (2, 3): if post_transform == "LOGISTIC": return np.array( [logistic(-scores[0]), logistic(scores[0])], dtype=scores.dtype ) if post_transform == "SOFTMAX": return softmax(np.array([-scores[0], scores[0]], dtype=scores.dtype)) if post_transform == "SOFTMAX_ZERO": return softmax_zero( np.array([-scores[0], scores[0]], dtype=scores.dtype) ) if post_transform == "PROBIT": raise RuntimeError( f"post_transform={post_transform!r} not applicable here." ) return np.array([-scores[0], scores[0]], dtype=scores.dtype) return np.array([scores[0]], dtype=scores.dtype) raise NotImplementedError(f"n_classes={n_classes} not supported.") def set_score_svm( max_weight, maxclass, has_proba, weights_are_all_positive_, classlabels, posclass, negclass, ): write_additional_scores = -1 if len(classlabels) == 2: write_additional_scores = 2 if not has_proba: if weights_are_all_positive_ and max_weight >= 0.5: return classlabels[1], write_additional_scores if max_weight > 0 and not weights_are_all_positive_: return classlabels[maxclass], write_additional_scores return classlabels[maxclass], write_additional_scores if max_weight > 0: return posclass, write_additional_scores return negclass, write_additional_scores class SVMClassifier(OpRunAiOnnxMl): def _run_linear(self, X, coefs, class_count_, kernel_type_): scores = [] for j in range(class_count_): d = self._svm.kernel_dot(X, coefs[j], kernel_type_) score = self._svm.atts.rho[0] + d # type: ignore scores.append(score) return np.array(scores, dtype=X.dtype) def _run_svm( self, X, sv, vector_count_, kernel_type_, class_count_, starting_vector_, coefs ): evals = 0 kernels_list = [] for j in range(vector_count_): kernels_list.append(self._svm.kernel_dot(X, sv[j], kernel_type_)) kernels = np.array(kernels_list) votes = np.zeros((class_count_,), dtype=X.dtype) scores = [] for i in range(class_count_): si_i = starting_vector_[i] class_i_sc = self._svm.atts.vectors_per_class[i] # type: ignore for j in range(i + 1, class_count_): si_j = starting_vector_[j] class_j_sc = self._svm.atts.vectors_per_class[j] # type: ignore s1 = np.dot( coefs[j - 1, si_i : si_i + class_i_sc], kernels[si_i : si_i + class_i_sc], ) s2 = np.dot( coefs[i, si_j : si_j + class_j_sc], kernels[si_j : si_j + class_j_sc], ) s = self._svm.atts.rho[evals] + s1 + s2 # type: ignore scores.append(s) if s > 0: votes[i] += 1 else: votes[j] += 1 evals += 1 return votes, np.array(scores, dtype=X.dtype) def _probabilities(self, scores, class_count_): probsp2 = np.zeros((class_count_, class_count_), dtype=scores.dtype) index = 0 for i in range(class_count_): for j in range(i + 1, class_count_): val1 = sigmoid_probability( scores[index], self._svm.atts.prob_a[index], # type: ignore self._svm.atts.prob_b[index], # type: ignore ) val2 = max(val1, 1.0e-7) val2 = min(val2, (1 - 1.0e-7)) probsp2[i, j] = val2 probsp2[j, i] = 1 - val2 index += 1 return multiclass_probability(class_count_, probsp2) def _compute_final_scores( self, votes, scores, weights_are_all_positive_, has_proba, classlabels_ints ): max_weight = 0 if votes is not None and len(votes) > 0: max_class = np.argmax(votes) max_weight = votes[max_class] else: max_class = np.argmax(scores) max_weight = scores[max_class] write_additional_scores = -1 if self._svm.atts.rho.size == 1: # type: ignore label, write_additional_scores = set_score_svm( max_weight, max_class, has_proba, weights_are_all_positive_, classlabels_ints, 1, 0, ) elif classlabels_ints is not None and len(classlabels_ints) > 0: label = classlabels_ints[max_class] else: label = max_class new_scores = write_scores( scores.size, scores, self._svm.atts.post_transform, write_additional_scores # type: ignore ) return label, new_scores def _run( # type: ignore self, X, classlabels_ints=None, classlabels_strings=None, coefficients=None, kernel_params=None, kernel_type=None, post_transform=None, prob_a=None, prob_b=None, rho=None, support_vectors=None, vectors_per_class=None, ): svm = SVMCommon( coefficients=coefficients, kernel_params=kernel_params, kernel_type=kernel_type, post_transform=post_transform, prob_a=prob_a, prob_b=prob_b, rho=rho, support_vectors=support_vectors, vectors_per_class=vectors_per_class, ) # unused unless for debugging purposes self._svm = svm # pylint: disable=W0201 vector_count_ = 0 class_count_ = max(len(classlabels_ints or classlabels_strings or []), 1) starting_vector_ = [] if svm.atts.vectors_per_class is not None: # type: ignore for vc in svm.atts.vectors_per_class: # type: ignore starting_vector_.append(vector_count_) vector_count_ += vc if vector_count_ > 0: # length of each support vector mode = "SVM_SVC" sv = svm.atts.support_vectors.reshape((vector_count_, -1)) # type: ignore kernel_type_ = svm.atts.kernel_type # type: ignore coefs = svm.atts.coefficients.reshape((-1, vector_count_)) # type: ignore else: # liblinear mode mode = "SVM_LINEAR" kernel_type_ = "LINEAR" coefs = svm.atts.coefficients.reshape((class_count_, -1)) # type: ignore weights_are_all_positive_ = min(svm.atts.coefficients) >= 0 # type: ignore # SVM part if vector_count_ == 0 and mode == "SVM_LINEAR": res = np.empty((X.shape[0], class_count_), dtype=X.dtype) for n in range(X.shape[0]): scores = self._run_linear(X[n], coefs, class_count_, kernel_type_) res[n, :] = scores votes = None else: res = np.empty( (X.shape[0], class_count_ * (class_count_ - 1) // 2), dtype=X.dtype ) votes = np.empty((X.shape[0], class_count_), dtype=X.dtype) for n in range(X.shape[0]): vote, scores = self._run_svm( X[n], sv, vector_count_, kernel_type_, class_count_, starting_vector_, coefs, ) res[n, :] = scores votes[n, :] = vote # proba if ( svm.atts.prob_a is not None # type: ignore and len(svm.atts.prob_a) > 0 # type: ignore and mode == "SVM_SVC" ): scores = np.empty((res.shape[0], class_count_), dtype=X.dtype) for n in range(scores.shape[0]): s = self._probabilities(res[n], class_count_) scores[n, :] = s has_proba = True else: scores = res has_proba = False # finalization final_scores = None labels = [] for n in range(scores.shape[0]): label, new_scores = self._compute_final_scores( None if votes is None else votes[n], scores[n], weights_are_all_positive_, has_proba, classlabels_ints, ) if final_scores is None: final_scores = np.empty((X.shape[0], new_scores.size), dtype=X.dtype) final_scores[n, :] = new_scores labels.append(label) # labels if classlabels_strings is not None and len(classlabels_strings) > 0: return (np.array([classlabels_strings[i] for i in labels]), final_scores) return (np.array(labels, dtype=np.int64), final_scores)
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59,125
onnx/onnx
refs/heads/main
/onnx/reference/ops/_helpers.py
# Copyright (c) ONNX Project Contributors # Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 from typing import Any, Dict, Union from onnx.reference.op_run import OpRun, _split_class_name def build_registered_operators_any_domain( module_context: Dict[str, Any] ) -> Dict[str, Dict[Union[int, None], OpRun]]: reg_ops: Dict[str, Dict[Union[int, None], OpRun]] = {} for class_name, class_type in module_context.items(): if class_name.startswith("_") or class_name in { "Any", "Dict", "List", "TOptional", "Union", "cl", "class_name", "get_schema", "module_context", "textwrap", }: continue if isinstance(class_type, type(build_registered_operators_any_domain)): continue try: issub = issubclass(class_type, OpRun) except TypeError as e: raise TypeError( f"Unexpected variable type {class_type!r} and class_name={class_name!r}." ) from e if issub: op_type, op_version = _split_class_name(class_name) if op_type not in reg_ops: reg_ops[op_type] = {} reg_ops[op_type][op_version] = class_type if not reg_ops: raise RuntimeError( "No registered operator. This error happens when no implementation " "of type 'OpRun' was detected. It may be due to an error during installation. Please try reinstalling onnx." ) # Set default implementation to the latest one. for impl in reg_ops.values(): if None in impl: # default already exists continue max_version = max(impl) # type: ignore[type-var] impl[None] = impl[max_version] return reg_ops
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59,126
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/tfidfvectorizer.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 from typing import Any import numpy as np import onnx from onnx import NodeProto from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class TfIdfVectorizerHelper: def __init__(self, **params: Any) -> None: # Attr names mode = "mode" min_gram_length = "min_gram_length" max_gram_length = "max_gram_length" max_skip_count = "max_skip_count" ngram_counts = "ngram_counts" ngram_indexes = "ngram_indexes" pool_int64s = "pool_int64s" required_attr = [ mode, min_gram_length, max_gram_length, max_skip_count, ngram_counts, ngram_indexes, pool_int64s, ] for i in required_attr: assert i in params, f"Missing attribute: {i}" self.mode = params[mode] self.min_gram_length = params[min_gram_length] self.max_gram_length = params[max_gram_length] self.max_skip_count = params[max_skip_count] self.ngram_counts = params[ngram_counts] self.ngram_indexes = params[ngram_indexes] self.pool_int64s = params[pool_int64s] def make_node_noweights(self) -> NodeProto: return onnx.helper.make_node( "TfIdfVectorizer", inputs=["X"], outputs=["Y"], mode=self.mode, min_gram_length=self.min_gram_length, max_gram_length=self.max_gram_length, max_skip_count=self.max_skip_count, ngram_counts=self.ngram_counts, ngram_indexes=self.ngram_indexes, pool_int64s=self.pool_int64s, ) class TfIdfVectorizer(Base): @staticmethod def export_tf_only_bigrams_skip0() -> None: input = np.array([1, 1, 3, 3, 3, 7, 8, 6, 7, 5, 6, 8]).astype(np.int32) output = np.array([0.0, 0.0, 0.0, 0.0, 1.0, 1.0, 1.0]).astype(np.float32) ngram_counts = np.array([0, 4]).astype(np.int64) ngram_indexes = np.array([0, 1, 2, 3, 4, 5, 6]).astype(np.int64) pool_int64s = np.array([2, 3, 5, 4, 5, 6, 7, 8, 6, 7]).astype( # unigrams np.int64 ) # bigrams helper = TfIdfVectorizerHelper( mode="TF", min_gram_length=2, max_gram_length=2, max_skip_count=0, ngram_counts=ngram_counts, ngram_indexes=ngram_indexes, pool_int64s=pool_int64s, ) node = helper.make_node_noweights() expect( node, inputs=[input], outputs=[output], name="test_tfidfvectorizer_tf_only_bigrams_skip0", ) @staticmethod def export_tf_batch_onlybigrams_skip0() -> None: input = np.array([[1, 1, 3, 3, 3, 7], [8, 6, 7, 5, 6, 8]]).astype(np.int32) output = np.array( [[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 1.0, 0.0, 1.0]] ).astype(np.float32) ngram_counts = np.array([0, 4]).astype(np.int64) ngram_indexes = np.array([0, 1, 2, 3, 4, 5, 6]).astype(np.int64) pool_int64s = np.array([2, 3, 5, 4, 5, 6, 7, 8, 6, 7]).astype( # unigrams np.int64 ) # bigrams helper = TfIdfVectorizerHelper( mode="TF", min_gram_length=2, max_gram_length=2, max_skip_count=0, ngram_counts=ngram_counts, ngram_indexes=ngram_indexes, pool_int64s=pool_int64s, ) node = helper.make_node_noweights() expect( node, inputs=[input], outputs=[output], name="test_tfidfvectorizer_tf_batch_onlybigrams_skip0", ) @staticmethod def export_tf_onlybigrams_levelempty() -> None: input = np.array([1, 1, 3, 3, 3, 7, 8, 6, 7, 5, 6, 8]).astype(np.int32) output = np.array([1.0, 1.0, 1.0]).astype(np.float32) ngram_counts = np.array([0, 0]).astype(np.int64) ngram_indexes = np.array([0, 1, 2]).astype(np.int64) pool_int64s = np.array([5, 6, 7, 8, 6, 7]).astype( # unigrams none np.int64 ) # bigrams helper = TfIdfVectorizerHelper( mode="TF", min_gram_length=2, max_gram_length=2, max_skip_count=0, ngram_counts=ngram_counts, ngram_indexes=ngram_indexes, pool_int64s=pool_int64s, ) node = helper.make_node_noweights() expect( node, inputs=[input], outputs=[output], name="test_tfidfvectorizer_tf_onlybigrams_levelempty", ) @staticmethod def export_tf_onlybigrams_skip5() -> None: input = np.array([1, 1, 3, 3, 3, 7, 8, 6, 7, 5, 6, 8]).astype(np.int32) output = np.array([0.0, 0.0, 0.0, 0.0, 1.0, 3.0, 1.0]).astype(np.float32) ngram_counts = np.array([0, 4]).astype(np.int64) ngram_indexes = np.array([0, 1, 2, 3, 4, 5, 6]).astype(np.int64) pool_int64s = np.array([2, 3, 5, 4, 5, 6, 7, 8, 6, 7]).astype( # unigrams np.int64 ) # bigrams helper = TfIdfVectorizerHelper( mode="TF", min_gram_length=2, max_gram_length=2, max_skip_count=5, ngram_counts=ngram_counts, ngram_indexes=ngram_indexes, pool_int64s=pool_int64s, ) node = helper.make_node_noweights() expect( node, inputs=[input], outputs=[output], name="test_tfidfvectorizer_tf_onlybigrams_skip5", ) @staticmethod def export_tf_batch_onlybigrams_skip5() -> None: input = np.array([[1, 1, 3, 3, 3, 7], [8, 6, 7, 5, 6, 8]]).astype(np.int32) output = np.array( [[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 1.0, 1.0, 1.0]] ).astype(np.float32) ngram_counts = np.array([0, 4]).astype(np.int64) ngram_indexes = np.array([0, 1, 2, 3, 4, 5, 6]).astype(np.int64) pool_int64s = np.array([2, 3, 5, 4, 5, 6, 7, 8, 6, 7]).astype( # unigrams np.int64 ) # bigrams helper = TfIdfVectorizerHelper( mode="TF", min_gram_length=2, max_gram_length=2, max_skip_count=5, ngram_counts=ngram_counts, ngram_indexes=ngram_indexes, pool_int64s=pool_int64s, ) node = helper.make_node_noweights() expect( node, inputs=[input], outputs=[output], name="test_tfidfvectorizer_tf_batch_onlybigrams_skip5", ) @staticmethod def export_tf_uniandbigrams_skip5() -> None: input = np.array([1, 1, 3, 3, 3, 7, 8, 6, 7, 5, 6, 8]).astype(np.int32) output = np.array([0.0, 3.0, 1.0, 0.0, 1.0, 3.0, 1.0]).astype(np.float32) ngram_counts = np.array([0, 4]).astype(np.int64) ngram_indexes = np.array([0, 1, 2, 3, 4, 5, 6]).astype(np.int64) pool_int64s = np.array([2, 3, 5, 4, 5, 6, 7, 8, 6, 7]).astype( # unigrams np.int64 ) # bigrams helper = TfIdfVectorizerHelper( mode="TF", min_gram_length=1, max_gram_length=2, max_skip_count=5, ngram_counts=ngram_counts, ngram_indexes=ngram_indexes, pool_int64s=pool_int64s, ) node = helper.make_node_noweights() expect( node, inputs=[input], outputs=[output], name="test_tfidfvectorizer_tf_uniandbigrams_skip5", ) @staticmethod def export_tf_batch_uniandbigrams_skip5() -> None: input = np.array([[1, 1, 3, 3, 3, 7], [8, 6, 7, 5, 6, 8]]).astype(np.int32) output = np.array( [[0.0, 3.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0, 1.0, 1.0, 1.0]] ).astype(np.float32) ngram_counts = np.array([0, 4]).astype(np.int64) ngram_indexes = np.array([0, 1, 2, 3, 4, 5, 6]).astype(np.int64) pool_int64s = np.array([2, 3, 5, 4, 5, 6, 7, 8, 6, 7]).astype( # unigrams np.int64 ) # bigrams helper = TfIdfVectorizerHelper( mode="TF", min_gram_length=1, max_gram_length=2, max_skip_count=5, ngram_counts=ngram_counts, ngram_indexes=ngram_indexes, pool_int64s=pool_int64s, ) node = helper.make_node_noweights() expect( node, inputs=[input], outputs=[output], name="test_tfidfvectorizer_tf_batch_uniandbigrams_skip5", )
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59,127
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_average_pool.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221,R0913,R0914 from onnx.reference.ops.op_pool_common import CommonPool class AveragePool_1(CommonPool): def _run( # type: ignore self, x, auto_pad=None, ceil_mode=None, kernel_shape=None, pads=None, strides=None, count_include_pad=None, ): return CommonPool._run( self, "AVG", count_include_pad, x, auto_pad=auto_pad, ceil_mode=ceil_mode, dilations=None, kernel_shape=kernel_shape, pads=pads, strides=strides, ) class AveragePool_7(CommonPool): def _run( # type: ignore self, x, auto_pad=None, ceil_mode=None, kernel_shape=None, pads=None, strides=None, count_include_pad=None, ): return CommonPool._run( self, "AVG", count_include_pad, x, auto_pad=auto_pad, ceil_mode=ceil_mode, dilations=None, kernel_shape=kernel_shape, pads=pads, strides=strides, ) class AveragePool_11(CommonPool): def _run( # type: ignore self, x, auto_pad=None, ceil_mode=None, kernel_shape=None, pads=None, strides=None, count_include_pad=None, ): return CommonPool._run( self, "AVG", count_include_pad, x, auto_pad=auto_pad, ceil_mode=ceil_mode, dilations=None, kernel_shape=kernel_shape, pads=pads, strides=strides, ) class AveragePool_19(CommonPool): def _run( # type: ignore self, x, auto_pad=None, ceil_mode=None, dilations=None, kernel_shape=None, pads=None, strides=None, count_include_pad=None, ): return CommonPool._run( self, "AVG", count_include_pad, x, auto_pad=auto_pad, ceil_mode=ceil_mode, dilations=dilations, kernel_shape=kernel_shape, pads=pads, strides=strides, )
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59,128
onnx/onnx
refs/heads/main
/onnx/backend/test/runner/item.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import dataclasses from typing import Any, Callable, List, Optional, Union from onnx import ModelProto, NodeProto # A container that hosts the test function and the associated # test item (ModelProto) @dataclasses.dataclass class TestItem: func: Callable[..., Any] proto: List[Optional[Union[ModelProto, NodeProto]]]
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59,129
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/gatherelements.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect # The below GatherElements' numpy implementation is from https://stackoverflow.com/a/46204790/11767360 def gather_elements(data, indices, axis=0): # type: ignore data_swaped = np.swapaxes(data, 0, axis) index_swaped = np.swapaxes(indices, 0, axis) gathered = np.choose(index_swaped, data_swaped, mode="wrap") y = np.swapaxes(gathered, 0, axis) return y class GatherElements(Base): @staticmethod def export_gather_elements_0() -> None: axis = 1 node = onnx.helper.make_node( "GatherElements", inputs=["data", "indices"], outputs=["y"], axis=axis, ) data = np.array([[1, 2], [3, 4]], dtype=np.float32) indices = np.array([[0, 0], [1, 0]], dtype=np.int32) y = gather_elements(data, indices, axis) # print(y) produces # [[1, 1], # [4, 3]] expect( node, inputs=[data, indices.astype(np.int64)], outputs=[y], name="test_gather_elements_0", ) @staticmethod def export_gather_elements_1() -> None: axis = 0 node = onnx.helper.make_node( "GatherElements", inputs=["data", "indices"], outputs=["y"], axis=axis, ) data = np.array([[1, 2, 3], [4, 5, 6], [7, 8, 9]], dtype=np.float32) indices = np.array([[1, 2, 0], [2, 0, 0]], dtype=np.int32) y = gather_elements(data, indices, axis) # print(y) produces # [[4, 8, 3], # [7, 2, 3]] expect( node, inputs=[data, indices.astype(np.int64)], outputs=[y], name="test_gather_elements_1", ) @staticmethod def export_gather_elements_negative_indices() -> None: axis = 0 node = onnx.helper.make_node( "GatherElements", inputs=["data", "indices"], outputs=["y"], axis=axis, ) data = np.array([[1, 2, 3], [4, 5, 6], [7, 8, 9]], dtype=np.float32) indices = np.array([[-1, -2, 0], [-2, 0, 0]], dtype=np.int32) y = gather_elements(data, indices, axis) # print(y) produces # [[7, 5, 3], # [4, 2, 3]] expect( node, inputs=[data, indices.astype(np.int64)], outputs=[y], name="test_gather_elements_negative_indices", )
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59,130
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/slice.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Slice(Base): @staticmethod def export_slice() -> None: node = onnx.helper.make_node( "Slice", inputs=["x", "starts", "ends", "axes", "steps"], outputs=["y"], ) x = np.random.randn(20, 10, 5).astype(np.float32) y = x[0:3, 0:10] starts = np.array([0, 0], dtype=np.int64) ends = np.array([3, 10], dtype=np.int64) axes = np.array([0, 1], dtype=np.int64) steps = np.array([1, 1], dtype=np.int64) expect( node, inputs=[x, starts, ends, axes, steps], outputs=[y], name="test_slice" ) @staticmethod def export_slice_neg() -> None: node = onnx.helper.make_node( "Slice", inputs=["x", "starts", "ends", "axes", "steps"], outputs=["y"], ) x = np.random.randn(20, 10, 5).astype(np.float32) starts = np.array([0], dtype=np.int64) ends = np.array([-1], dtype=np.int64) axes = np.array([1], dtype=np.int64) steps = np.array([1], dtype=np.int64) y = x[:, 0:-1] expect( node, inputs=[x, starts, ends, axes, steps], outputs=[y], name="test_slice_neg", ) @staticmethod def export_slice_start_out_of_bounds() -> None: node = onnx.helper.make_node( "Slice", inputs=["x", "starts", "ends", "axes", "steps"], outputs=["y"], ) x = np.random.randn(20, 10, 5).astype(np.float32) starts = np.array([1000], dtype=np.int64) ends = np.array([1000], dtype=np.int64) axes = np.array([1], dtype=np.int64) steps = np.array([1], dtype=np.int64) y = x[:, 1000:1000] expect( node, inputs=[x, starts, ends, axes, steps], outputs=[y], name="test_slice_start_out_of_bounds", ) @staticmethod def export_slice_end_out_of_bounds() -> None: node = onnx.helper.make_node( "Slice", inputs=["x", "starts", "ends", "axes", "steps"], outputs=["y"], ) x = np.random.randn(20, 10, 5).astype(np.float32) starts = np.array([1], dtype=np.int64) ends = np.array([1000], dtype=np.int64) axes = np.array([1], dtype=np.int64) steps = np.array([1], dtype=np.int64) y = x[:, 1:1000] expect( node, inputs=[x, starts, ends, axes, steps], outputs=[y], name="test_slice_end_out_of_bounds", ) @staticmethod def export_slice_default_axes() -> None: node = onnx.helper.make_node( "Slice", inputs=["x", "starts", "ends"], outputs=["y"], ) x = np.random.randn(20, 10, 5).astype(np.float32) starts = np.array([0, 0, 3], dtype=np.int64) ends = np.array([20, 10, 4], dtype=np.int64) y = x[:, :, 3:4] expect( node, inputs=[x, starts, ends], outputs=[y], name="test_slice_default_axes" ) @staticmethod def export_slice_default_steps() -> None: node = onnx.helper.make_node( "Slice", inputs=["x", "starts", "ends", "axes"], outputs=["y"], ) x = np.random.randn(20, 10, 5).astype(np.float32) starts = np.array([0, 0, 3], dtype=np.int64) ends = np.array([20, 10, 4], dtype=np.int64) axes = np.array([0, 1, 2], dtype=np.int64) y = x[:, :, 3:4] expect( node, inputs=[x, starts, ends, axes], outputs=[y], name="test_slice_default_steps", ) @staticmethod def export_slice_neg_steps() -> None: node = onnx.helper.make_node( "Slice", inputs=["x", "starts", "ends", "axes", "steps"], outputs=["y"], ) x = np.random.randn(20, 10, 5).astype(np.float32) starts = np.array([20, 10, 4], dtype=np.int64) ends = np.array([0, 0, 1], dtype=np.int64) axes = np.array([0, 1, 2], dtype=np.int64) steps = np.array([-1, -3, -2]).astype(np.int64) y = x[20:0:-1, 10:0:-3, 4:1:-2] expect( node, inputs=[x, starts, ends, axes, steps], outputs=[y], name="test_slice_neg_steps", ) @staticmethod def export_slice_negative_axes() -> None: node = onnx.helper.make_node( "Slice", inputs=["x", "starts", "ends", "axes"], outputs=["y"], ) x = np.random.randn(20, 10, 5).astype(np.float32) starts = np.array([0, 0, 3], dtype=np.int64) ends = np.array([20, 10, 4], dtype=np.int64) axes = np.array([0, -2, -1], dtype=np.int64) y = x[:, :, 3:4] expect( node, inputs=[x, starts, ends, axes], outputs=[y], name="test_slice_negative_axes", )
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59,131
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/stft.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class STFT(Base): @staticmethod def export() -> None: signal = np.arange(0, 128, dtype=np.float32).reshape(1, 128, 1) length = np.array(16).astype(np.int64) onesided_length = (length >> 1) + 1 step = np.array(8).astype(np.int64) no_window = "" # optional input, not supplied node = onnx.helper.make_node( "STFT", inputs=["signal", "frame_step", no_window, "frame_length"], outputs=["output"], ) nstfts = ((signal.shape[1] - length) // step) + 1 # [batch_size][frames][frame_length][2] output = np.empty([1, nstfts, onesided_length, 2], dtype=np.float32) for i in range(nstfts): start = i * step stop = i * step + length complex_out = np.fft.fft(signal[0, start:stop, 0])[0:onesided_length] output[0, i] = np.stack((complex_out.real, complex_out.imag), axis=1) expect(node, inputs=[signal, step, length], outputs=[output], name="test_stft") node = onnx.helper.make_node( "STFT", inputs=["signal", "frame_step", "window"], outputs=["output"], ) # Test with window a0 = 0.5 a1 = 0.5 window = a0 + a1 * np.cos( 2 * np.pi * np.arange(0, length, 1, dtype=np.float32) / length ) nstfts = 1 + (signal.shape[1] - window.shape[0]) // step # [batch_size][frames][frame_length][2] output = np.empty([1, nstfts, onesided_length, 2], dtype=np.float32) for i in range(nstfts): start = i * step stop = i * step + length complex_out = np.fft.fft(signal[0, start:stop, 0] * window)[ 0:onesided_length ] output[0, i] = np.stack((complex_out.real, complex_out.imag), axis=1) expect( node, inputs=[signal, step, window], outputs=[output], name="test_stft_with_window", )
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59,132
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_matmul.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.ops._op import OpRunBinaryNum def numpy_matmul(a, b): # type: ignore """ Implements a matmul product. See :func:`np.matmul`. Handles sparse matrices. """ try: if len(a.shape) <= 2 and len(b.shape) <= 2: return np.dot(a, b) return np.matmul(a, b) except ValueError as e: raise ValueError(f"Unable to multiply shapes {a.shape!r}, {b.shape!r}.") from e class MatMul(OpRunBinaryNum): def _run(self, a, b): # type: ignore return (numpy_matmul(a, b),)
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59,133
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_mel_weight_matrix.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,R0914,W0221 import numpy as np from onnx.helper import tensor_dtype_to_np_dtype from onnx.reference.op_run import OpRun class MelWeightMatrix(OpRun): def _run( # type: ignore self, num_mel_bins, dft_length, sample_rate, lower_edge_hertz, upper_edge_hertz, output_datatype=None, ): num_spectrogram_bins = dft_length // 2 + 1 frequency_bins = np.arange(0, num_mel_bins + 2) low_frequency_mel = 2595 * np.log10(1 + lower_edge_hertz / 700) high_frequency_mel = 2595 * np.log10(1 + upper_edge_hertz / 700) mel_step = (high_frequency_mel - low_frequency_mel) / frequency_bins.shape[0] frequency_bins = frequency_bins * mel_step + low_frequency_mel frequency_bins = 700 * (np.power(10, (frequency_bins / 2595)) - 1) frequency_bins = ((dft_length + 1) * frequency_bins) // sample_rate frequency_bins = frequency_bins.astype(int) output = np.zeros((num_spectrogram_bins, num_mel_bins)) output.flags.writeable = True for i in range(num_mel_bins): lower_frequency_value = frequency_bins[i] # left center_frequency_point = frequency_bins[i + 1] # center higher_frequency_point = frequency_bins[i + 2] # right low_to_center = center_frequency_point - lower_frequency_value if low_to_center == 0: output[center_frequency_point, i] = 1 else: for j in range(lower_frequency_value, center_frequency_point + 1): output[j, i] = float(j - lower_frequency_value) / float( low_to_center ) center_to_high = higher_frequency_point - center_frequency_point if center_to_high > 0: for j in range(center_frequency_point, higher_frequency_point): output[j, i] = float(higher_frequency_point - j) / float( center_to_high ) if output_datatype is None: output = output.astype(np.float32) else: dtype = tensor_dtype_to_np_dtype(output_datatype) output = output.astype(dtype) return (output,)
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59,134
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_cast.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0912,W0221 import numpy as np from onnx.helper import ( float32_to_bfloat16, float32_to_float8e4m3, float32_to_float8e5m2, tensor_dtype_to_np_dtype, ) from onnx.numpy_helper import ( bfloat16_to_float32, float8e4m3_to_float32, float8e5m2_to_float32, ) from onnx.onnx_pb import TensorProto from onnx.reference.custom_element_types import ( bfloat16, float8e4m3fn, float8e4m3fnuz, float8e5m2, float8e5m2fnuz, ) from onnx.reference.op_run import OpRun def cast_to(x, to, saturate): if x.dtype == bfloat16 and x.dtype.descr[0][0] == "bfloat16": if to == TensorProto.BFLOAT16: return x xr = x.ravel() xf = np.empty(xr.shape[0], dtype=np.float32) for i in range(xr.shape[0]): el = bfloat16_to_float32(xr[i]) xf[i] = el dtype = tensor_dtype_to_np_dtype(to) return xf.astype(dtype).reshape(x.shape) f8 = { (float8e4m3fn, "e4m3fn", TensorProto.FLOAT8E4M3FN): float8e4m3_to_float32, ( float8e4m3fnuz, "e4m3fnuz", TensorProto.FLOAT8E4M3FNUZ, ): lambda *args: float8e4m3_to_float32(*args, uz=True), (float8e5m2, "e5m2", TensorProto.FLOAT8E5M2): float8e5m2_to_float32, ( float8e5m2fnuz, "e5m2fnuz", TensorProto.FLOAT8E5M2FNUZ, ): lambda *args: float8e5m2_to_float32(*args, fn=True, uz=True), } for (dt, st, proto_type), cvt in f8.items(): if x.dtype == dt and x.dtype.descr[0][0] == st: if to == proto_type: return x xr = x.ravel() xf = np.empty(xr.shape[0], dtype=np.float32) for i in range(xr.shape[0]): el = cvt(xr[i]) xf[i] = el dtype = tensor_dtype_to_np_dtype(to) return xf.astype(dtype).reshape(x.shape) if to == TensorProto.BFLOAT16: xf = x.astype(np.float32).ravel() y = np.empty(xf.shape, dtype=bfloat16).ravel() for i in range(y.shape[0]): el = float32_to_bfloat16(xf[i], truncate=True) # type: ignore[assignment] y[i] = el return y.reshape(x.shape) f8back = { TensorProto.FLOAT8E4M3FN: ( float8e4m3fn, lambda *args: float32_to_float8e4m3(*args, saturate=saturate), ), TensorProto.FLOAT8E4M3FNUZ: ( float8e4m3fnuz, lambda *args: float32_to_float8e4m3(*args, uz=True, saturate=saturate), ), TensorProto.FLOAT8E5M2: ( float8e5m2, lambda *args: float32_to_float8e5m2(*args, saturate=saturate), ), TensorProto.FLOAT8E5M2FNUZ: ( float8e5m2fnuz, lambda *args: float32_to_float8e5m2( *args, fn=True, uz=True, saturate=saturate ), ), } for dt, (npdt, cvt) in f8back.items(): if to == dt: xf = x.astype(np.float32).ravel() y = np.empty(xf.shape, dtype=npdt).ravel() for i in range(y.shape[0]): el = cvt(xf[i]) # type: ignore[assignment] y[i] = el return y.reshape(x.shape) if to == TensorProto.STRING: return x.astype(np.str_) dtype = tensor_dtype_to_np_dtype(to) return x.astype(dtype) class Cast_1(OpRun): def _run(self, x, to=None): # type: ignore return (cast_to(x, to, saturate=True),) class Cast_19(OpRun): def _run(self, x, to=None, saturate=None): # type: ignore return (cast_to(x, to, saturate),)
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59,135
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/asin.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Asin(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "Asin", inputs=["x"], outputs=["y"], ) x = np.array([-0.5, 0, 0.5]).astype(np.float32) y = np.arcsin(x) expect(node, inputs=[x], outputs=[y], name="test_asin_example") x = np.random.rand(3, 4, 5).astype(np.float32) y = np.arcsin(x) expect(node, inputs=[x], outputs=[y], name="test_asin")
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59,136
onnx/onnx
refs/heads/main
/onnx/reference/ops/aionnxml/op_normalizer.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,R0914,W0221 import numpy as np from onnx.reference.ops.aionnxml._op_run_aionnxml import OpRunAiOnnxMl class Normalizer(OpRunAiOnnxMl): @staticmethod def norm_max(x): # type: ignore "max normalization" div = np.abs(x).max(axis=1).reshape((x.shape[0], -1)) return x / np.maximum(div, 1e-30) @staticmethod def norm_l1(x): # type: ignore "L1 normalization" div = np.abs(x).sum(axis=1).reshape((x.shape[0], -1)) return x / np.maximum(div, 1e-30) @staticmethod def norm_l2(x): # type: ignore "L2 normalization" xn = np.square(x).sum(axis=1) np.sqrt(xn, out=xn) norm = np.maximum(xn.reshape((x.shape[0], -1)), 1e-30) return x / norm def _run(self, x, norm=None): # type: ignore if norm == "MAX": _norm = Normalizer.norm_max elif norm == "L1": _norm = Normalizer.norm_l1 elif norm == "L2": _norm = Normalizer.norm_l2 else: raise ValueError(f"Unexpected value for norm='{norm}'.") return (_norm(x),)
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59,137
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refs/heads/main
/onnx/backend/test/case/node/unique.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect def specify_int64(indices, inverse_indices, counts): # type: ignore return ( np.array(indices, dtype=np.int64), np.array(inverse_indices, dtype=np.int64), np.array(counts, dtype=np.int64), ) class Unique(Base): @staticmethod def export_sorted_without_axis() -> None: node_sorted = onnx.helper.make_node( "Unique", inputs=["X"], outputs=["Y", "indices", "inverse_indices", "counts"], ) x = np.array([2.0, 1.0, 1.0, 3.0, 4.0, 3.0], dtype=np.float32) y, indices, inverse_indices, counts = np.unique(x, True, True, True) indices, inverse_indices, counts = specify_int64( indices, inverse_indices, counts ) expect( node_sorted, inputs=[x], outputs=[y, indices, inverse_indices, counts], name="test_unique_sorted_without_axis", ) @staticmethod def export_not_sorted_without_axis() -> None: node_not_sorted = onnx.helper.make_node( "Unique", inputs=["X"], outputs=["Y", "indices", "inverse_indices", "counts"], sorted=0, ) # numpy unique does not retain original order (it sorts the output unique values) # https://github.com/numpy/numpy/issues/8621 # we need to recover unsorted output and indices x = np.array([2.0, 1.0, 1.0, 3.0, 4.0, 3.0], dtype=np.float32) y, indices, inverse_indices, counts = np.unique(x, True, True, True) # prepare index mapping from sorted to unsorted argsorted_indices = np.argsort(indices) inverse_indices_map = dict( zip(argsorted_indices, np.arange(len(argsorted_indices))) ) indices = indices[argsorted_indices] y = np.take(x, indices, axis=0) inverse_indices = np.asarray( [inverse_indices_map[i] for i in inverse_indices], dtype=np.int64 ) counts = counts[argsorted_indices] indices, inverse_indices, counts = specify_int64( indices, inverse_indices, counts ) # print(y) # [2.0, 1.0, 3.0, 4.0] # print(indices) # [0 1 3 4] # print(inverse_indices) # [0, 1, 1, 2, 3, 2] # print(counts) # [1, 2, 2, 1] expect( node_not_sorted, inputs=[x], outputs=[y, indices, inverse_indices, counts], name="test_unique_not_sorted_without_axis", ) @staticmethod def export_sorted_with_axis() -> None: node_sorted = onnx.helper.make_node( "Unique", inputs=["X"], outputs=["Y", "indices", "inverse_indices", "counts"], sorted=1, axis=0, ) x = np.array([[1, 0, 0], [1, 0, 0], [2, 3, 4]], dtype=np.float32) y, indices, inverse_indices, counts = np.unique(x, True, True, True, axis=0) indices, inverse_indices, counts = specify_int64( indices, inverse_indices, counts ) # print(y) # [[1. 0. 0.] # [2. 3. 4.]] # print(indices) # [0 2] # print(inverse_indices) # [0 0 1] # print(counts) # [2 1] expect( node_sorted, inputs=[x], outputs=[y, indices, inverse_indices, counts], name="test_unique_sorted_with_axis", ) @staticmethod def export_sorted_with_axis_3d() -> None: node_sorted = onnx.helper.make_node( "Unique", inputs=["X"], outputs=["Y", "indices", "inverse_indices", "counts"], sorted=1, axis=1, ) x = np.array( [ [[1.0, 1.0], [0.0, 1.0], [2.0, 1.0], [0.0, 1.0]], [[1.0, 1.0], [0.0, 1.0], [2.0, 1.0], [0.0, 1.0]], ], dtype=np.float32, ) y, indices, inverse_indices, counts = np.unique(x, True, True, True, axis=1) indices, inverse_indices, counts = specify_int64( indices, inverse_indices, counts ) # print(y) # [[[0. 1.] # [1. 1.] # [2. 1.]] # [[0. 1.] # [1. 1.] # [2. 1.]]] # print(indices) # [1 0 2] # print(inverse_indices) # [1 0 2 0] # print(counts) # [2 1 1] expect( node_sorted, inputs=[x], outputs=[y, indices, inverse_indices, counts], name="test_unique_sorted_with_axis_3d", ) @staticmethod def export_sorted_with_negative_axis() -> None: node_sorted = onnx.helper.make_node( "Unique", inputs=["X"], outputs=["Y", "indices", "inverse_indices", "counts"], sorted=1, axis=-1, ) x = np.array([[1, 0, 0], [1, 0, 0], [2, 3, 3]], dtype=np.float32) y, indices, inverse_indices, counts = np.unique(x, True, True, True, axis=-1) indices, inverse_indices, counts = specify_int64( indices, inverse_indices, counts ) # print(y) # [[0. 1.] # [0. 1.] # [3. 2.]] # print(indices) # [1 0] # print(inverse_indices) # [1 0 0] # print(counts) # [2 1] expect( node_sorted, inputs=[x], outputs=[y, indices, inverse_indices, counts], name="test_unique_sorted_with_negative_axis", )
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59,138
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_gather_elements.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.op_run import OpRun def gather_numpy_2(self: np.ndarray, index: np.ndarray) -> np.ndarray: res = [] for a, b in zip(self, index): res.append(a[b[0]]) return np.array(res, dtype=self.dtype).reshape(index.shape) def gather_numpy(self: np.ndarray, dim: int, index: np.ndarray) -> np.ndarray: idx_xsection_shape = index.shape[:dim] + index.shape[dim + 1 :] self_xsection_shape = self.shape[:dim] + self.shape[dim + 1 :] if idx_xsection_shape != self_xsection_shape: raise ValueError( f"Except for dimension {dim!r}, all dimensions of " f"index and self should be the same size." ) data_swaped = np.swapaxes(self, 0, dim) index_swaped = np.swapaxes(index, 0, dim) try: gathered = np.choose(index_swaped, data_swaped, mode="wrap") except ValueError as e: if len(index_swaped.shape) == 2 and len(data_swaped.shape) == 2: return gather_numpy_2(self, index) raise e # pragma: no cover return np.swapaxes(gathered, 0, dim) class GatherElements(OpRun): def _run(self, data, indices, axis=None): # type: ignore if indices.size == 0: return (np.empty((0,), dtype=data.dtype),) try: return (gather_numpy(data, axis, indices),) except TypeError: # distribution x86 requires int32. return (gather_numpy(data, axis, indices.astype(int)),)
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59,139
onnx/onnx
refs/heads/main
/onnx/helper.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 # pylint: disable=C0302,R0912 import collections.abc import numbers import struct from cmath import isnan from typing import ( Any, Callable, Dict, KeysView, List, Optional, Sequence, Tuple, TypeVar, Union, cast, ) import google.protobuf.message import numpy as np from onnx import ( IR_VERSION, AttributeProto, FunctionProto, GraphProto, MapProto, ModelProto, NodeProto, OperatorSetIdProto, OptionalProto, SequenceProto, SparseTensorProto, TensorProto, TensorShapeProto, TrainingInfoProto, TypeProto, ValueInfoProto, defs, mapping, ) VersionRowType = Union[Tuple[str, int, int, int], Tuple[str, int, int, int, int]] VersionTableType = List[VersionRowType] AssignmentBindingType = List[Tuple[str, str]] # This is a copy of the documented version in https://github.com/onnx/onnx/blob/main/docs/Versioning.md#released-versions # Both must be updated whenever a new version of ONNX is released. VERSION_TABLE: VersionTableType = [ # Release-version, IR version, ai.onnx version, ai.onnx.ml version, (optional) ai.onnx.training version ("1.0", 3, 1, 1), ("1.1", 3, 5, 1), ("1.1.2", 3, 6, 1), ("1.2", 3, 7, 1), ("1.3", 3, 8, 1), ("1.4.1", 4, 9, 1), ("1.5.0", 5, 10, 1), ("1.6.0", 6, 11, 2), ("1.7.0", 7, 12, 2, 1), ("1.8.0", 7, 13, 2, 1), ("1.8.1", 7, 13, 2, 1), ("1.9.0", 7, 14, 2, 1), ("1.10.0", 8, 15, 2, 1), ("1.10.1", 8, 15, 2, 1), ("1.10.2", 8, 15, 2, 1), ("1.11.0", 8, 16, 3, 1), ("1.12.0", 8, 17, 3, 1), ("1.13.0", 8, 18, 3, 1), ("1.13.1", 8, 18, 3, 1), ("1.14.0", 9, 19, 3, 1), ] VersionMapType = Dict[Tuple[str, int], int] def create_op_set_id_version_map(table: VersionTableType) -> VersionMapType: """create a map from (opset-domain, opset-version) to ir-version from above table""" result: VersionMapType = {} def process(release_version: str, ir_version: int, *args: Any) -> None: del release_version # Unused for pair in zip(["ai.onnx", "ai.onnx.ml", "ai.onnx.training"], args): if pair not in result: result[pair] = ir_version if pair[0] == "ai.onnx.training": result["ai.onnx.preview.training", pair[1]] = ir_version for row in table: process(*row) return result OP_SET_ID_VERSION_MAP = create_op_set_id_version_map(VERSION_TABLE) def find_min_ir_version_for( opsetidlist: List[OperatorSetIdProto], ignore_unknown: bool = False ) -> int: """Given list of opset ids, determine minimum IR version required. Arguments: opsetidlist (List[OperatorSetIdProto]): The list of OperatorSetIdProto ignore_unknown (bool): If True, ignore unknown domain and return default min version for that domain. Returns: The minimum IR version required (integer) """ default_min_version = 3 def find_min(domain: Union[str, None], version: int) -> int: key = (domain or "ai.onnx", version) if key in OP_SET_ID_VERSION_MAP: return OP_SET_ID_VERSION_MAP[key] if ignore_unknown: return default_min_version raise ValueError("Unsupported opset-version.") if opsetidlist: return max(find_min(x.domain, x.version) for x in opsetidlist) return default_min_version # if no opsets specified def make_node( op_type: str, inputs: Sequence[str], outputs: Sequence[str], name: Optional[str] = None, doc_string: Optional[str] = None, domain: Optional[str] = None, **kwargs: Any, ) -> NodeProto: """Construct a NodeProto. Arguments: op_type (string): The name of the operator to construct inputs (list of string): list of input names outputs (list of string): list of output names name (string, default None): optional unique identifier for NodeProto doc_string (string, default None): optional documentation string for NodeProto domain (string, default None): optional domain for NodeProto. If it's None, we will just use default domain (which is empty) **kwargs (dict): the attributes of the node. The acceptable values are documented in :func:`make_attribute`. Returns: NodeProto """ node = NodeProto() node.op_type = op_type node.input.extend(inputs) node.output.extend(outputs) if name: node.name = name if doc_string: node.doc_string = doc_string if domain is not None: node.domain = domain if kwargs: node.attribute.extend( make_attribute(key, value) for key, value in sorted(kwargs.items()) if value is not None ) return node def make_operatorsetid( domain: str, version: int, ) -> OperatorSetIdProto: """Construct an OperatorSetIdProto. Arguments: domain (string): The domain of the operator set id version (integer): Version of operator set id Returns: OperatorSetIdProto """ operatorsetid = OperatorSetIdProto() operatorsetid.domain = domain operatorsetid.version = version return operatorsetid def make_graph( nodes: Sequence[NodeProto], name: str, inputs: Sequence[ValueInfoProto], outputs: Sequence[ValueInfoProto], initializer: Optional[Sequence[TensorProto]] = None, doc_string: Optional[str] = None, value_info: Optional[Sequence[ValueInfoProto]] = None, sparse_initializer: Optional[Sequence[SparseTensorProto]] = None, ) -> GraphProto: """Construct a GraphProto Arguments: nodes: list of NodeProto name (string): graph name inputs: list of ValueInfoProto outputs: list of ValueInfoProto initializer: list of TensorProto doc_string (string): graph documentation value_info: list of ValueInfoProto sparse_initializer: list of SparseTensorProto Returns: GraphProto """ if initializer is None: initializer = [] if sparse_initializer is None: sparse_initializer = [] if value_info is None: value_info = [] graph = GraphProto() graph.node.extend(nodes) graph.name = name graph.input.extend(inputs) graph.output.extend(outputs) graph.initializer.extend(initializer) graph.sparse_initializer.extend(sparse_initializer) graph.value_info.extend(value_info) if doc_string: graph.doc_string = doc_string return graph def make_opsetid(domain: str, version: int) -> OperatorSetIdProto: """Construct an OperatorSetIdProto. Arguments: domain (string): The domain of the operator set id version (integer): Version of operator set id Returns: OperatorSetIdProto """ opsetid = OperatorSetIdProto() opsetid.domain = domain opsetid.version = version return opsetid def make_function( domain: str, fname: str, inputs: Sequence[str], outputs: Sequence[str], nodes: Sequence[NodeProto], opset_imports: Sequence[OperatorSetIdProto], attributes: Optional[Sequence[str]] = None, attribute_protos: Optional[Sequence[AttributeProto]] = None, doc_string: Optional[str] = None, ) -> FunctionProto: if attributes is None: attributes = [] if attribute_protos is None: attribute_protos = [] f = FunctionProto() f.domain = domain f.name = fname f.input.extend(inputs) f.output.extend(outputs) f.node.extend(nodes) f.opset_import.extend(opset_imports) f.attribute.extend(attributes) f.attribute_proto.extend(attribute_protos) if doc_string: f.doc_string = doc_string return f def make_model(graph: GraphProto, **kwargs: Any) -> ModelProto: """Construct a ModelProto Arguments: graph (GraphProto): *make_graph* returns **kwargs: any attribute to add to the returned instance Returns: ModelProto """ model = ModelProto() # Touch model.ir_version so it is stored as the version from which it is # generated. model.ir_version = IR_VERSION model.graph.CopyFrom(graph) opset_imports: Optional[Sequence[OperatorSetIdProto]] = None opset_imports = kwargs.pop("opset_imports", None) # type: ignore if opset_imports is not None: model.opset_import.extend(opset_imports) else: # Default import imp = model.opset_import.add() imp.version = defs.onnx_opset_version() functions: Optional[Sequence[FunctionProto]] = None functions = kwargs.pop("functions", None) # type: ignore if functions is not None: model.functions.extend(functions) for k, v in kwargs.items(): # TODO: Does this work with repeated fields? setattr(model, k, v) return model # An extension of make_model that infers an IR_VERSION for the model, # if not specified, using a best-effort-basis. def make_model_gen_version(graph: GraphProto, **kwargs: Any) -> ModelProto: ir_version_field = "ir_version" if ir_version_field not in kwargs: opset_imports_field = "opset_imports" imports = kwargs[opset_imports_field] if opset_imports_field in kwargs else [] kwargs[ir_version_field] = find_min_ir_version_for(imports) return make_model(graph, **kwargs) def set_model_props(model: ModelProto, dict_value: Dict[str, str]) -> None: del model.metadata_props[:] for k, v in dict_value.items(): entry = model.metadata_props.add() entry.key = k entry.value = v # model.metadata_properties.append(entry) def split_complex_to_pairs(ca: Sequence[np.complex64]) -> Sequence[int]: return [ (ca[i // 2].real if (i % 2 == 0) else ca[i // 2].imag) # type: ignore[misc] for i in range(len(ca) * 2) ] # convert a float32 value to a bfloat16 (as int) # By default, this conversion rounds-to-nearest-even and supports NaN # Setting `truncate` to True enables a simpler conversion. In this mode the # conversion is performed by simply dropping the 2 least significant bytes of # the significand. In this mode an error of up to 1 bit may be introduced and # preservation of NaN values is not be guaranteed. def float32_to_bfloat16(fval: float, truncate: bool = False) -> int: ival = int.from_bytes(struct.pack("<f", fval), "little") if truncate: return ival >> 16 # NaN requires at least 1 significand bit set if isnan(fval): return 0x7FC0 # sign=0, exp=all-ones, sig=0b1000000 # drop bottom 16-bits # round remaining bits using round-to-nearest-even rounded = ((ival >> 16) & 1) + 0x7FFF return (ival + rounded) >> 16 def float32_to_float8e4m3( # pylint: disable=too-many-statements fval: float, scale: float = 1.0, fn: bool = True, uz: bool = False, saturate: bool = True, ) -> int: """ Convert a float32 value to a float8, e4m3 (as int). :param fval: float to convert :param scale: scale, divide *fval* by *scale* before casting it :param fn: no infinite values :param uz: no negative zero :param saturate: if True, any value out of range included inf becomes the maximum value, otherwise, it becomes NaN. The description of operator Cast fully describes the differences. :return: converted float See :ref:`onnx-detail-float8` for technical details. """ if not fn: raise NotImplementedError( "float32_to_float8e4m3 not implemented with fn=False." ) x = fval / scale b = int.from_bytes(struct.pack("<f", np.float32(x)), "little") ret = (b & 0x80000000) >> 24 # sign if uz: if (b & 0x7FC00000) == 0x7FC00000: return 0x80 if np.isinf(x): if saturate: return ret | 127 return 0x80 e = (b & 0x7F800000) >> 23 # exponent m = b & 0x007FFFFF # mantissa if e != 0: if e < 116: pass elif e < 120: # denormalized number ex = e - 119 if ex >= -2: ret |= 1 << (2 + ex) ret |= m >> (21 - ex) elif m > 0: ret |= 1 mask = 1 << (20 - ex) if m & mask and ( # pylint: disable=too-many-boolean-expressions ret & 1 or m & (mask - 1) > 0 or (m & mask and m & (mask << 1) and m & (mask - 1) == 0) ): # rounding ret += 1 elif e < 135: # normalized number ex = e - 119 # 127 - 8 if ex == 0: ret |= 0x4 ret |= m >> 21 else: ret |= ex << 3 ret |= m >> 20 if m & 0x80000 and ((m & 0x100000) or (m & 0x7FFFF)): if (ret & 0x7F) < 0x7F: # rounding ret += 1 elif not saturate: return 0x80 elif saturate: ret |= 0x7F # 01111110 else: ret = 0x80 elif m == 0: # -0 ret = 0 return int(ret) else: if (b & 0x7FC00000) == 0x7FC00000: return 0x7F | ret if np.isinf(x): if saturate: return ret | 126 return 0x7F | ret e = (b & 0x7F800000) >> 23 # exponent m = b & 0x007FFFFF # mantissa if e != 0: if e < 117: pass elif e < 121: # denormalized number ex = e - 120 if ex >= -2: ret |= 1 << (2 + ex) ret |= m >> (21 - ex) elif m > 0: ret |= 1 mask = 1 << (20 - ex) if m & mask and ( # pylint: disable=too-many-boolean-expressions ret & 1 or m & (mask - 1) > 0 or (m & mask and m & (mask << 1) and m & (mask - 1) == 0) ): # rounding ret += 1 elif e < 136: # normalized number ex = e - 120 if ex == 0: ret |= 0x4 ret |= m >> 21 else: ret |= ex << 3 ret |= m >> 20 if (ret & 0x7F) == 0x7F: ret &= 0xFE if (m & 0x80000) and ((m & 0x100000) or (m & 0x7FFFF)): if (ret & 0x7F) < 0x7E: # rounding ret += 1 elif not saturate: ret |= 0x7F elif saturate: ret |= 126 # 01111110 else: ret |= 0x7F return int(ret) def float32_to_float8e5m2( # pylint: disable=too-many-statements fval: float, scale: float = 1.0, fn: bool = False, uz: bool = False, saturate: bool = True, ) -> int: """ Convert a float32 value to a float8, e5m2 (as int). :param fval: float to convert :param scale: scale, divide *fval* by *scale* before casting it :param fn: no infinite values :param uz: no negative zero :param saturate: if True, any value out of range included inf becomes the maximum value, otherwise, it becomes NaN. The description of operator Cast fully describes the differences. :return: converted float """ x = fval / scale b = int.from_bytes(struct.pack("<f", np.float32(x)), "little") ret = (b & 0x80000000) >> 24 # sign if fn and uz: if (b & 0x7FC00000) == 0x7FC00000: return 0x80 if (b & 0x7FFFFFFF) == 0x7F800000: # inf if saturate: return ret | 0x7F return 0x80 e = (b & 0x7F800000) >> 23 # exponent m = b & 0x007FFFFF # mantissa if e != 0: if e < 109: pass elif e < 112: # denormalized number ex = e - 111 if ex >= -1: ret |= 1 << (1 + ex) ret |= m >> (22 - ex) elif m > 0: ret |= 1 mask = 1 << (21 - ex) if m & mask and ( # pylint: disable=too-many-boolean-expressions ret & 1 or m & (mask - 1) > 0 or (m & mask and m & (mask << 1) and m & (mask - 1) == 0) ): # rounding ret += 1 elif e < 143: # normalized number ex = e - 111 ret |= ex << 2 ret |= m >> 21 if m & 0x100000 and ((m & 0xFFFFF) or (m & 0x200000)): if (ret & 0x7F) < 0x7F: # rounding ret += 1 elif not saturate: ret = 0x80 elif e == 255 and m == 0: # inf ret = 0x80 elif saturate: ret |= 0x7F # last possible number else: ret = 0x80 elif m == 0: # -0 ret = 0 return int(ret) elif not fn and not uz: if (b & 0x7FC00000) == 0x7FC00000: return 0x7F | ret if np.isinf(x): if saturate: return 0x7B | ret return 0x7C | ret e = (b & 0x7F800000) >> 23 # exponent m = b & 0x007FFFFF # mantissa if e != 0: if e < 110: pass elif e < 113: # denormalized number ex = e - 112 if ex >= -1: ret |= 1 << (1 + ex) ret |= m >> (22 - ex) elif m > 0: ret |= 1 mask = 1 << (21 - ex) if m & mask and ( # pylint: disable=too-many-boolean-expressions ret & 1 or m & (mask - 1) > 0 or (m & mask and m & (mask << 1) and m & (mask - 1) == 0) ): # rounding ret += 1 elif e < 143: # normalized number ex = e - 112 ret |= ex << 2 ret |= m >> 21 if m & 0x100000 and ((m & 0xFFFFF) or (m & 0x200000)): if (ret & 0x7F) < 0x7B: # rounding ret += 1 elif saturate: ret |= 0x7B else: ret |= 0x7C elif saturate: ret |= 0x7B else: ret |= 0x7C return int(ret) else: raise NotImplementedError("fn and uz must be both False or True.") def make_tensor( name: str, data_type: int, dims: Sequence[int], vals: Any, raw: bool = False ) -> TensorProto: """ Make a TensorProto with specified arguments. If raw is False, this function will choose the corresponding proto field to store the values based on data_type. If raw is True, use "raw_data" proto field to store the values, and values should be of type bytes in this case. Arguments: name (string): tensor name data_type (int): a value such as onnx.TensorProto.FLOAT dims (List[int]): shape vals: values raw (bool): if True, vals contains the serialized content of the tensor, otherwise, vals should be a list of values of the type defined by *data_type* Returns: TensorProto """ tensor = TensorProto() tensor.data_type = data_type tensor.name = name if data_type == TensorProto.STRING and raw: raise TypeError("Can not use raw_data to store string type.") np_dtype = tensor_dtype_to_np_dtype(data_type) # Check number of vals specified equals tensor size expected_size = 1 if raw: # NumPy doesn't have BFLOAT16. TENSOR_TYPE_TO_NP_TYPE maps it to float32, # which has the wrong itemsize. if data_type == TensorProto.BFLOAT16: expected_size = 2 elif data_type in ( TensorProto.FLOAT8E4M3FN, TensorProto.FLOAT8E4M3FNUZ, TensorProto.FLOAT8E5M2, TensorProto.FLOAT8E5M2FNUZ, ): expected_size = 1 else: expected_size = np_dtype.itemsize if ( type(vals) is np.ndarray # pylint: disable=unidiomatic-typecheck and len(vals.shape) > 1 ): vals = vals.flatten() for d in dims: expected_size *= d if len(vals) != expected_size: raise ValueError( f"Number of values does not match tensor's size. Expected {expected_size}, but it is {len(vals)}. " ) if raw: tensor.raw_data = vals else: if data_type in (TensorProto.COMPLEX64, TensorProto.COMPLEX128): vals = split_complex_to_pairs(vals) elif data_type == TensorProto.FLOAT16: vals = ( np.array(vals).astype(np_dtype).view(dtype=np.uint16).flatten().tolist() ) elif data_type in ( TensorProto.BFLOAT16, TensorProto.FLOAT8E4M3FN, TensorProto.FLOAT8E4M3FNUZ, TensorProto.FLOAT8E5M2, TensorProto.FLOAT8E5M2FNUZ, ): fcast = { TensorProto.BFLOAT16: float32_to_bfloat16, TensorProto.FLOAT8E4M3FN: float32_to_float8e4m3, TensorProto.FLOAT8E4M3FNUZ: lambda *args: float32_to_float8e4m3( # type: ignore[misc] *args, uz=True ), TensorProto.FLOAT8E5M2: float32_to_float8e5m2, TensorProto.FLOAT8E5M2FNUZ: lambda *args: float32_to_float8e5m2( # type: ignore[misc] *args, fn=True, uz=True ), }[ data_type # type: ignore[index] ] vals = list( map( # type: ignore[call-overload] fcast, np.array(vals).astype(np_dtype).flatten().tolist(), ) ) elif data_type == TensorProto.BOOL: vals = np.array(vals).astype(int) field = tensor_dtype_to_field(data_type) getattr(tensor, field).extend(vals) tensor.dims.extend(dims) return tensor def make_sparse_tensor( values: TensorProto, indices: TensorProto, dims: Sequence[int] ) -> SparseTensorProto: """Construct a SparseTensorProto Arguments: values (TensorProto): the values indices (TensorProto): the indices dims: the shape Returns: SparseTensorProto """ sparse = SparseTensorProto() sparse.values.CopyFrom(values) sparse.indices.CopyFrom(indices) sparse.dims.extend(dims) return sparse def make_sequence( name: str, elem_type: SequenceProto.DataType, values: Sequence[Any], ) -> SequenceProto: """ Make a Sequence with specified value arguments. """ sequence = SequenceProto() sequence.name = name sequence.elem_type = elem_type if elem_type == SequenceProto.UNDEFINED: return sequence if elem_type == SequenceProto.TENSOR: attribute = sequence.tensor_values elif elem_type == SequenceProto.SPARSE_TENSOR: attribute = sequence.sparse_tensor_values # type: ignore[assignment] elif elem_type == SequenceProto.SEQUENCE: attribute = sequence.sequence_values # type: ignore[assignment] elif elem_type == SequenceProto.MAP: attribute = sequence.map_values # type: ignore[assignment] elif elem_type == OptionalProto.OPTIONAL: attribute = sequence.optional_values # type: ignore[assignment] else: raise TypeError("The element type in the input sequence is not supported.") attribute.extend(values) return sequence def make_map( name: str, key_type: int, keys: List[Any], values: SequenceProto ) -> MapProto: """ Make a Map with specified key-value pair arguments. Criteria for conversion: - Keys and Values must have the same number of elements - Every key in keys must be of the same type - Every value in values must be of the same type """ map_proto = MapProto() valid_key_int_types = [ TensorProto.INT8, TensorProto.INT16, TensorProto.INT32, TensorProto.INT64, TensorProto.UINT8, TensorProto.UINT16, TensorProto.UINT32, TensorProto.UINT64, ] map_proto.name = name map_proto.key_type = key_type if key_type == TensorProto.STRING: map_proto.string_keys.extend(keys) elif key_type in valid_key_int_types: map_proto.keys.extend(keys) map_proto.values.CopyFrom(values) return map_proto def make_optional( name: str, elem_type: OptionalProto.DataType, value: Optional[Any], ) -> OptionalProto: """ Make an Optional with specified value arguments. """ optional = OptionalProto() optional.name = name optional.elem_type = elem_type if elem_type == OptionalProto.UNDEFINED: return optional if elem_type == OptionalProto.TENSOR: attribute = optional.tensor_value elif elem_type == OptionalProto.SPARSE_TENSOR: attribute = optional.sparse_tensor_value # type: ignore[assignment] elif elem_type == OptionalProto.SEQUENCE: attribute = optional.sequence_value # type: ignore[assignment] elif elem_type == OptionalProto.MAP: attribute = optional.map_value # type: ignore[assignment] elif elem_type == OptionalProto.OPTIONAL: attribute = optional.optional_value # type: ignore[assignment] else: raise TypeError("The element type in the input optional is not supported.") attribute.CopyFrom(value) # type: ignore[arg-type] return optional def _to_bytes(value: Union[str, bytes]) -> bytes: """Coerce a string (or bytes) value into UTF-8 bytes.""" return value if isinstance(value, bytes) else value.encode("utf-8") def make_attribute( # pylint: disable=too-many-statements key: str, value: Any, doc_string: Optional[str] = None, attr_type: Optional[int] = None, ) -> AttributeProto: """Makes an AttributeProto based on the value type.""" attr = AttributeProto() attr.name = key if doc_string: attr.doc_string = doc_string # Singular cases if isinstance(value, numbers.Integral): attr.i = int(value) attr.type = AttributeProto.INT elif isinstance(value, numbers.Real): attr.f = float(value) attr.type = AttributeProto.FLOAT elif isinstance(value, (str, bytes)): # Encode strings into utf-8 attr.s = _to_bytes(value) attr.type = AttributeProto.STRING elif isinstance(value, TensorProto): attr.t.CopyFrom(value) attr.type = AttributeProto.TENSOR elif isinstance(value, SparseTensorProto): attr.sparse_tensor.CopyFrom(value) attr.type = AttributeProto.SPARSE_TENSOR elif isinstance(value, GraphProto): attr.g.CopyFrom(value) attr.type = AttributeProto.GRAPH elif isinstance(value, TypeProto): attr.tp.CopyFrom(value) attr.type = AttributeProto.TYPE_PROTO # Iterable cases elif isinstance(value, collections.abc.Iterable): value = list(value) if len(value) == 0 and attr_type is None: raise ValueError( f"Could not infer attribute `{key}` type from empty iterator" ) if attr_type is None: types = {type(v) for v in value} for exp_t, exp_enum in ( (numbers.Integral, AttributeProto.INTS), (numbers.Real, AttributeProto.FLOATS), ((str, bytes), AttributeProto.STRINGS), (TensorProto, AttributeProto.TENSORS), (SparseTensorProto, AttributeProto.SPARSE_TENSORS), (GraphProto, AttributeProto.GRAPHS), (TypeProto, AttributeProto.TYPE_PROTOS), ): if all(issubclass(t, exp_t) for t in types): # type: ignore[arg-type] attr_type = exp_enum break if attr_type is None: raise ValueError( "Could not infer the attribute type from the elements of the passed Iterable value." ) if attr_type == AttributeProto.INTS: attr.ints.extend(value) attr.type = AttributeProto.INTS elif attr_type == AttributeProto.FLOATS: attr.floats.extend(value) attr.type = AttributeProto.FLOATS elif attr_type == AttributeProto.STRINGS: attr.strings.extend(_to_bytes(v) for v in value) attr.type = AttributeProto.STRINGS elif attr_type == AttributeProto.TENSORS: attr.tensors.extend(value) attr.type = AttributeProto.TENSORS elif attr_type == AttributeProto.SPARSE_TENSORS: attr.sparse_tensors.extend(value) attr.type = AttributeProto.SPARSE_TENSORS elif attr_type == AttributeProto.GRAPHS: attr.graphs.extend(value) attr.type = AttributeProto.GRAPHS elif attr_type == AttributeProto.TYPE_PROTOS: attr.type_protos.extend(value) attr.type = AttributeProto.TYPE_PROTOS else: raise AssertionError() # Should not reach since `ValueError` must be raised in attr_type checking else: raise TypeError(f"'{value}' is not an accepted attribute value.") if attr_type is not None and attr.type != attr_type: raise TypeError( f"Inferred attribute type {attr.type} mismatched with specified type {attr_type}" ) return attr def make_attribute_ref( name: str, attr_type: AttributeProto.AttributeType, doc_string: Optional[str] = None ) -> AttributeProto: """Make an AttributeProto holding a reference to the parent function's attribute of given name and type.""" attr = AttributeProto() attr.name = name attr.type = attr_type if doc_string: attr.doc_string = doc_string return attr def get_attribute_value(attr: AttributeProto) -> Any: if attr.ref_attr_name: raise ValueError(f"Cannot get value of reference attribute: {attr}") if attr.type == AttributeProto.FLOAT: return attr.f if attr.type == AttributeProto.INT: return attr.i if attr.type == AttributeProto.STRING: return attr.s if attr.type == AttributeProto.TENSOR: return attr.t if attr.type == AttributeProto.SPARSE_TENSOR: return attr.sparse_tensor if attr.type == AttributeProto.GRAPH: return attr.g if attr.type == AttributeProto.TYPE_PROTO: return attr.tp if attr.type == AttributeProto.FLOATS: return list(attr.floats) if attr.type == AttributeProto.INTS: return list(attr.ints) if attr.type == AttributeProto.STRINGS: return list(attr.strings) if attr.type == AttributeProto.TENSORS: return list(attr.tensors) if attr.type == AttributeProto.SPARSE_TENSORS: return list(attr.sparse_tensors) if attr.type == AttributeProto.GRAPHS: return list(attr.graphs) if attr.type == AttributeProto.TYPE_PROTOS: return list(attr.type_protos) raise ValueError(f"Unsupported ONNX attribute: {attr}") def get_node_attr_value(node: NodeProto, attr_name: str) -> Any: matching = [x for x in node.attribute if x.name == attr_name] if len(matching) > 1: raise ValueError(f"Node has multiple attributes with name {attr_name}") if len(matching) < 1: raise ValueError(f"Node has no attribute with name {attr_name}") return get_attribute_value(matching[0]) def make_empty_tensor_value_info(name: str) -> ValueInfoProto: value_info_proto = ValueInfoProto() value_info_proto.name = name return value_info_proto def make_tensor_type_proto( elem_type: int, shape: Optional[Sequence[Union[str, int, None]]], shape_denotation: Optional[List[str]] = None, ) -> TypeProto: """Makes a Tensor TypeProto based on the data type and shape.""" type_proto = TypeProto() tensor_type_proto = type_proto.tensor_type tensor_type_proto.elem_type = elem_type tensor_shape_proto = tensor_type_proto.shape if shape is not None: # You might think this is a no-op (extending a normal Python # list by [] certainly is), but protobuf lists work a little # differently; if a field is never set, it is omitted from the # resulting protobuf; a list that is explicitly set to be # empty will get an (empty) entry in the protobuf. This # difference is visible to our consumers, so make sure we emit # an empty shape! tensor_shape_proto.dim.extend([]) if shape_denotation and len(shape_denotation) != len(shape): raise ValueError( "Invalid shape_denotation. Must be of the same length as shape." ) for i, d in enumerate(shape): dim = tensor_shape_proto.dim.add() if d is None: pass elif isinstance(d, int): dim.dim_value = d elif isinstance(d, str): dim.dim_param = d else: raise ValueError( f"Invalid item in shape: {d}. Needs to be of int or str." ) if shape_denotation: dim.denotation = shape_denotation[i] return type_proto def make_tensor_value_info( name: str, elem_type: int, shape: Optional[Sequence[Union[str, int, None]]], doc_string: str = "", shape_denotation: Optional[List[str]] = None, ) -> ValueInfoProto: """Makes a ValueInfoProto based on the data type and shape.""" value_info_proto = ValueInfoProto() value_info_proto.name = name if doc_string: value_info_proto.doc_string = doc_string tensor_type_proto = make_tensor_type_proto(elem_type, shape, shape_denotation) value_info_proto.type.CopyFrom(tensor_type_proto) return value_info_proto def make_sparse_tensor_type_proto( elem_type: int, shape: Optional[Sequence[Union[str, int, None]]], shape_denotation: Optional[List[str]] = None, ) -> TypeProto: """Makes a SparseTensor TypeProto based on the data type and shape.""" type_proto = TypeProto() sparse_tensor_type_proto = type_proto.sparse_tensor_type sparse_tensor_type_proto.elem_type = elem_type sparse_tensor_shape_proto = sparse_tensor_type_proto.shape if shape is not None: # You might think this is a no-op (extending a normal Python # list by [] certainly is), but protobuf lists work a little # differently; if a field is never set, it is omitted from the # resulting protobuf; a list that is explicitly set to be # empty will get an (empty) entry in the protobuf. This # difference is visible to our consumers, so make sure we emit # an empty shape! sparse_tensor_shape_proto.dim.extend([]) if shape_denotation and len(shape_denotation) != len(shape): raise ValueError( "Invalid shape_denotation. Must be of the same length as shape." ) for i, d in enumerate(shape): dim = sparse_tensor_shape_proto.dim.add() if d is None: pass elif isinstance(d, int): dim.dim_value = d elif isinstance(d, str): dim.dim_param = d else: raise ValueError( f"Invalid item in shape: {d}. Needs to be of int or text." ) if shape_denotation: dim.denotation = shape_denotation[i] return type_proto def make_sparse_tensor_value_info( name: str, elem_type: int, shape: Optional[Sequence[Union[str, int, None]]], doc_string: str = "", shape_denotation: Optional[List[str]] = None, ) -> ValueInfoProto: """Makes a SparseTensor ValueInfoProto based on the data type and shape.""" value_info_proto = ValueInfoProto() value_info_proto.name = name if doc_string: value_info_proto.doc_string = doc_string sparse_tensor_type_proto = make_sparse_tensor_type_proto( elem_type, shape, shape_denotation ) value_info_proto.type.sparse_tensor_type.CopyFrom( sparse_tensor_type_proto.sparse_tensor_type ) return value_info_proto def make_sequence_type_proto( inner_type_proto: TypeProto, ) -> TypeProto: """Makes a sequence TypeProto.""" type_proto = TypeProto() type_proto.sequence_type.elem_type.CopyFrom(inner_type_proto) return type_proto def make_optional_type_proto( inner_type_proto: TypeProto, ) -> TypeProto: """Makes an optional TypeProto.""" type_proto = TypeProto() type_proto.optional_type.elem_type.CopyFrom(inner_type_proto) return type_proto def make_map_type_proto( key_type: int, value_type: TypeProto, ) -> TypeProto: """Makes a map TypeProto.""" type_proto = TypeProto() type_proto.map_type.key_type = key_type type_proto.map_type.value_type.CopyFrom(value_type) return type_proto def make_value_info( name: str, type_proto: TypeProto, doc_string: str = "", ) -> ValueInfoProto: """Makes a ValueInfoProto with the given type_proto.""" value_info_proto = ValueInfoProto() value_info_proto.name = name if doc_string: value_info_proto.doc_string = doc_string value_info_proto.type.CopyFrom(type_proto) return value_info_proto def _sanitize_str(s: Union[str, bytes]) -> str: if isinstance(s, str): sanitized = s elif isinstance(s, bytes): sanitized = s.decode("utf-8", errors="ignore") else: sanitized = str(s) if len(sanitized) < 64: return sanitized return sanitized[:64] + f"...<+len={(len(sanitized) - 64)}>" def make_tensor_sequence_value_info( name: str, elem_type: int, shape: Optional[Sequence[Union[str, int, None]]], doc_string: str = "", elem_shape_denotation: Optional[List[str]] = None, ) -> ValueInfoProto: """Makes a Sequence[Tensors] ValueInfoProto based on the data type and shape.""" value_info_proto = ValueInfoProto() value_info_proto.name = name if doc_string: value_info_proto.doc_string = doc_string tensor_type_proto = make_tensor_type_proto(elem_type, shape, elem_shape_denotation) sequence_type_proto = make_sequence_type_proto(tensor_type_proto) value_info_proto.type.sequence_type.CopyFrom(sequence_type_proto.sequence_type) return value_info_proto def printable_attribute( attr: AttributeProto, subgraphs: bool = False ) -> Union[str, Tuple[str, List[GraphProto]]]: content = [] content.append(attr.name) content.append("=") def str_float(f: float) -> str: # NB: Different Python versions print different numbers of trailing # decimals, specifying this explicitly keeps it consistent for all # versions return f"{f:.15g}" def str_int(i: int) -> str: return str(i) _T = TypeVar("_T") def str_list(str_elem: Callable[[_T], str], xs: Sequence[_T]) -> str: return "[" + ", ".join(map(str_elem, xs)) + "]" # for now, this logic should continue to work as long as we are running on a proto3 # implementation. If/when we switch to proto3, we will need to use attr.type # To support printing subgraphs, if we find a graph attribute, print out # its name here and pass the graph itself up to the caller for later # printing. graphs = [] if attr.HasField("f"): content.append(str_float(attr.f)) elif attr.HasField("i"): content.append(str_int(attr.i)) elif attr.HasField("s"): # TODO: Bit nervous about Python 2 / Python 3 determinism implications content.append(repr(_sanitize_str(attr.s))) elif attr.HasField("t"): if len(attr.t.dims) > 0: content.append("<Tensor>") else: # special case to print scalars field = tensor_dtype_to_field(attr.t.data_type) content.append(f"<Scalar Tensor {getattr(attr.t, field)}>") elif attr.HasField("g"): content.append(f"<graph {attr.g.name}>") graphs.append(attr.g) elif attr.HasField("tp"): content.append(f"<Type Proto {attr.tp}>") elif attr.floats: content.append(str_list(str_float, attr.floats)) elif attr.ints: content.append(str_list(str_int, attr.ints)) elif attr.strings: # TODO: Bit nervous about Python 2 / Python 3 determinism implications content.append(str(list(map(_sanitize_str, attr.strings)))) elif attr.tensors: content.append("[<Tensor>, ...]") elif attr.type_protos: content.append("[") for i, tp in enumerate(attr.type_protos): comma = "," if i != len(attr.type_protos) - 1 else "" content.append(f"<Type Proto {tp}>{comma}") content.append("]") elif attr.graphs: content.append("[") for i, g in enumerate(attr.graphs): comma = "," if i != len(attr.graphs) - 1 else "" content.append(f"<graph {g.name}>{comma}") content.append("]") graphs.extend(attr.graphs) else: content.append("<Unknown>") if subgraphs: return " ".join(content), graphs return " ".join(content) def printable_dim(dim: TensorShapeProto.Dimension) -> str: which = dim.WhichOneof("value") if which is None: raise TypeError(f"which cannot be {None}.") return str(getattr(dim, which)) def printable_type(t: TypeProto) -> str: if t.WhichOneof("value") == "tensor_type": s = TensorProto.DataType.Name(t.tensor_type.elem_type) if t.tensor_type.HasField("shape"): if len(t.tensor_type.shape.dim): s += str(", " + "x".join(map(printable_dim, t.tensor_type.shape.dim))) else: s += ", scalar" return s if t.WhichOneof("value") is None: return "" return f"Unknown type {t.WhichOneof('value')}" def printable_value_info(v: ValueInfoProto) -> str: s = f"%{v.name}" if v.type: s = f"{s}[{printable_type(v.type)}]" return s def printable_tensor_proto(t: TensorProto) -> str: s = f"%{t.name}[" s += TensorProto.DataType.Name(t.data_type) if t.dims is not None: if len(t.dims): s += str(", " + "x".join(map(str, t.dims))) else: s += ", scalar" s += "]" return s def printable_node( node: NodeProto, prefix: str = "", subgraphs: bool = False ) -> Union[str, Tuple[str, List[GraphProto]]]: content = [] if len(node.output): content.append(", ".join([f"%{name}" for name in node.output])) content.append("=") # To deal with nested graphs graphs: List[GraphProto] = [] printed_attrs = [] for attr in node.attribute: if subgraphs: printed_attr_subgraphs = printable_attribute(attr, subgraphs) if not isinstance(printed_attr_subgraphs[1], list): raise TypeError( f"printed_attr_subgraphs[1] must be an instance of {list}." ) graphs.extend(printed_attr_subgraphs[1]) printed_attrs.append(printed_attr_subgraphs[0]) else: printed = printable_attribute(attr) if not isinstance(printed, str): raise TypeError(f"printed must be an instance of {str}.") printed_attrs.append(printed) printed_attributes = ", ".join(sorted(printed_attrs)) printed_inputs = ", ".join([f"%{name}" for name in node.input]) if node.attribute: content.append(f"{node.op_type}[{printed_attributes}]({printed_inputs})") else: content.append(f"{node.op_type}({printed_inputs})") if subgraphs: return prefix + " ".join(content), graphs return prefix + " ".join(content) def printable_graph(graph: GraphProto, prefix: str = "") -> str: """ Display a GraphProto as a string. Arguments: graph (GraphProto): the graph to display prefix (string): prefix of every line Returns: string """ content = [] indent = prefix + " " # header header = ["graph", graph.name] initializers = {t.name for t in graph.initializer} if len(graph.input): header.append("(") in_strs = [] # required inputs in_with_init_strs = ( [] ) # optional inputs with initializer providing default value for inp in graph.input: if inp.name not in initializers: in_strs.append(printable_value_info(inp)) else: in_with_init_strs.append(printable_value_info(inp)) if in_strs: content.append(prefix + " ".join(header)) header = [] for line in in_strs: content.append(prefix + " " + line) header.append(")") if in_with_init_strs: header.append("optional inputs with matching initializers (") content.append(prefix + " ".join(header)) header = [] for line in in_with_init_strs: content.append(prefix + " " + line) header.append(")") # from IR 4 onwards an initializer is not required to have a matching graph input # so output the name, type and shape of those as well if len(in_with_init_strs) < len(initializers): graph_inputs = {i.name for i in graph.input} init_strs = [ printable_tensor_proto(i) for i in graph.initializer if i.name not in graph_inputs ] header.append("initializers (") content.append(prefix + " ".join(header)) header = [] for line in init_strs: content.append(prefix + " " + line) header.append(")") header.append("{") content.append(prefix + " ".join(header)) graphs: List[GraphProto] = [] # body for node in graph.node: contents_subgraphs = printable_node(node, indent, subgraphs=True) if not isinstance(contents_subgraphs[1], list): raise TypeError(f"contents_subgraphs[1] must be an instance of {list}.") content.append(contents_subgraphs[0]) graphs.extend(contents_subgraphs[1]) # tail tail = ["return"] if len(graph.output): tail.append(", ".join([f"%{out.name}" for out in graph.output])) content.append(indent + " ".join(tail)) # closing bracket content.append(prefix + "}") for g in graphs: content.append("\n" + printable_graph(g)) return "\n".join(content) def strip_doc_string(proto: google.protobuf.message.Message) -> None: """ Empties `doc_string` field on any nested protobuf messages """ if not isinstance(proto, google.protobuf.message.Message): raise TypeError( f"proto must be an instance of {google.protobuf.message.Message}." ) for descriptor in proto.DESCRIPTOR.fields: if descriptor.name == "doc_string": proto.ClearField(descriptor.name) elif descriptor.type == descriptor.TYPE_MESSAGE: if descriptor.label == descriptor.LABEL_REPEATED: for x in getattr(proto, descriptor.name): strip_doc_string(x) elif proto.HasField(descriptor.name): strip_doc_string(getattr(proto, descriptor.name)) def make_training_info( algorithm: GraphProto, algorithm_bindings: AssignmentBindingType, initialization: Optional[GraphProto], initialization_bindings: Optional[AssignmentBindingType], ) -> TrainingInfoProto: training_info = TrainingInfoProto() training_info.algorithm.CopyFrom(algorithm) for k, v in algorithm_bindings: binding = training_info.update_binding.add() binding.key = k binding.value = v if initialization: training_info.initialization.CopyFrom(initialization) if initialization_bindings: for k, v in initialization_bindings: binding = training_info.initialization_binding.add() binding.key = k binding.value = v return training_info # Following functions are used for mapping def tensor_dtype_to_np_dtype(tensor_dtype: int) -> np.dtype: """ Convert a TensorProto's data_type to corresponding numpy dtype. It can be used while making tensor. :param tensor_dtype: TensorProto's data_type :return: numpy's data_type """ return mapping.TENSOR_TYPE_MAP[tensor_dtype].np_dtype def tensor_dtype_to_storage_tensor_dtype(tensor_dtype: int) -> int: """ Convert a TensorProto's data_type to corresponding data_type for storage. :param tensor_dtype: TensorProto's data_type :return: data_type for storage """ return mapping.TENSOR_TYPE_MAP[tensor_dtype].storage_dtype def tensor_dtype_to_string(tensor_dtype: int) -> str: """ Get the name of given TensorProto's data_type. :param tensor_dtype: TensorProto's data_type :return: the name of data_type """ return mapping.TENSOR_TYPE_MAP[tensor_dtype].name def tensor_dtype_to_field(tensor_dtype: int) -> str: """ Convert a TensorProto's data_type to corresponding field name for storage. It can be used while making tensors. :param tensor_dtype: TensorProto's data_type :return: field name """ return mapping._STORAGE_TENSOR_TYPE_TO_FIELD[ # pylint: disable=protected-access mapping.TENSOR_TYPE_MAP[tensor_dtype].storage_dtype ] def np_dtype_to_tensor_dtype(np_dtype: np.dtype) -> int: """ Convert a numpy's dtype to corresponding tensor type. It can be used while converting numpy arrays to tensors. :param np_dtype: numpy's data_type :return: TensorsProto's data_type """ return cast( int, mapping._NP_TYPE_TO_TENSOR_TYPE[np_dtype], # pylint: disable=protected-access ) def get_all_tensor_dtypes() -> KeysView[int]: """ Get all tensor types from TensorProto. :return: all tensor types from TensorProto """ return mapping.TENSOR_TYPE_MAP.keys()
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59,140
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/layernormalization.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect # Layer normalization's reference implementation def _layer_normalization(X, W, B, axis=-1, epsilon=1e-5): # type: ignore X_shape = X.shape X_rank = len(X_shape) if axis < 0: # If axis = -1 and rank of X is 4, # the axis is changed to -1 + 4 = 3, # which means the last axis. axis = axis + X_rank unsqueezed_rank = X_rank - axis reduction_shape = X_shape[0:axis] + (1,) * unsqueezed_rank # Parameter used to convert N-D tensor layer # normalization to equivalent 2-D matirx operations. row_number = 1 col_number = 1 for i in range(X_rank): if i < axis: row_number *= X_shape[i] else: col_number *= X_shape[i] # After reshaping input tensor X into a matrix, # layer normalization is equivalent to conducting # standardization on each column vector (s.t. each # column has zero mean and unit variance). x_mat = np.reshape(X, (row_number, col_number)) # This computes mean for every x_mat's column. x_mean = np.sum(x_mat, axis=1, keepdims=True) / col_number x_diff = x_mat - x_mean x_squared_diff = x_diff * x_diff # This computes variance for every x_mat's column. variance = np.sum(x_squared_diff, axis=1, keepdims=True) / col_number variance_eps = variance + epsilon std_dev = np.sqrt(variance_eps) inv_std_dev = np.reciprocal(std_dev) # Standardization step. y_mat is zero-mean and unit-variance. y_mat = x_diff * inv_std_dev # Apply affine transform on normalization outcome. # W is linear coefficient while B is bias. Y = np.reshape(y_mat, X_shape) * W + B # Matrix-level operations' outputs should be reshaped # to compensate the initial tensor-to-matrix reshape. X_mean = np.reshape(x_mean, reduction_shape) X_inv_std_dev = np.reshape(inv_std_dev, reduction_shape) return Y, X_mean, X_inv_std_dev def calculate_normalized_shape(X_shape, axis): # type: ignore X_rank = len(X_shape) if axis < 0: axis = axis + X_rank return X_shape[axis:] class LayerNormalization(Base): @staticmethod def export() -> None: X = np.random.randn(2, 3, 4, 5).astype(np.float32) def case(axis: int) -> None: normalized_shape = calculate_normalized_shape(X.shape, axis) W = np.random.randn(*normalized_shape).astype(np.float32) B = np.random.randn(*normalized_shape).astype(np.float32) Y, mean, inv_std_dev = _layer_normalization(X, W, B, axis) node = onnx.helper.make_node( "LayerNormalization", inputs=["X", "W", "B"], outputs=["Y", "Mean", "InvStdDev"], axis=axis, ) if axis < 0: name = f"test_layer_normalization_4d_axis_negative_{-axis}" else: name = f"test_layer_normalization_4d_axis{axis}" expect(node, inputs=[X, W, B], outputs=[Y, mean, inv_std_dev], name=name) for i in range(len(X.shape)): case(i) case(i - len(X.shape)) @staticmethod def export_default_axis() -> None: X = np.random.randn(2, 3, 4, 5).astype(np.float32) # Default axis in LayerNormalization is -1. normalized_shape = calculate_normalized_shape(X.shape, -1) W = np.random.randn(*normalized_shape).astype(np.float32) B = np.random.randn(*normalized_shape).astype(np.float32) # Axis is default to -1 in the reference implementation. Y, mean, inv_std_dev = _layer_normalization(X, W, B) # Not specifying axis attribute means -1. node = onnx.helper.make_node( "LayerNormalization", inputs=["X", "W", "B"], outputs=["Y", "Mean", "InvStdDev"], ) expect( node, inputs=[X, W, B], outputs=[Y, mean, inv_std_dev], name="test_layer_normalization_default_axis", ) @staticmethod def export2d() -> None: X = np.random.randn(3, 4).astype(np.float32) def case(axis: int) -> None: normalized_shape = calculate_normalized_shape(X.shape, axis) W = np.random.randn(*normalized_shape).astype(np.float32) B = np.random.randn(*normalized_shape).astype(np.float32) Y, mean, inv_std_dev = _layer_normalization(X, W, B, axis=axis) node = onnx.helper.make_node( "LayerNormalization", inputs=["X", "W", "B"], outputs=["Y", "Mean", "InvStdDev"], axis=axis, ) if axis < 0: name = f"test_layer_normalization_2d_axis_negative_{-axis}" else: name = f"test_layer_normalization_2d_axis{axis}" expect(node, inputs=[X, W, B], outputs=[Y, mean, inv_std_dev], name=name) for i in range(len(X.shape)): case(i) case(i - len(X.shape)) @staticmethod def export3d_epsilon() -> None: epsilon = 1e-1 X = np.random.randn(2, 3, 5).astype(np.float32) def case(axis: int) -> None: normalized_shape = calculate_normalized_shape(X.shape, axis) W = np.random.randn(*normalized_shape).astype(np.float32) B = np.random.randn(*normalized_shape).astype(np.float32) Y, mean, inv_std_dev = _layer_normalization(X, W, B, axis, epsilon) node = onnx.helper.make_node( "LayerNormalization", inputs=["X", "W", "B"], outputs=["Y", "Mean", "InvStdDev"], axis=axis, epsilon=epsilon, ) if axis < 0: name = f"test_layer_normalization_3d_axis_negative_{-axis}_epsilon" else: name = f"test_layer_normalization_3d_axis{axis}_epsilon" expect(node, inputs=[X, W, B], outputs=[Y, mean, inv_std_dev], name=name) for i in range(len(X.shape)): case(i) case(i - len(X.shape))
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59,141
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/groupnormalization.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect # Group normalization's reference implementation def _group_normalization(x, num_groups, scale, bias, epsilon=1e-5): # Assume channel is first dim assert x.shape[1] % num_groups == 0 group_size = x.shape[1] // num_groups # Reshape to [N, group_size, C/group_size, H, W, ...] new_shape = [x.shape[0], num_groups, group_size, *list(x.shape[2:])] x_reshaped = x.reshape(new_shape) axes = tuple(range(2, len(new_shape))) mean = np.mean(x_reshaped, axis=axes, keepdims=True) var = np.var(x_reshaped, axis=axes, keepdims=True) dim_ones = (1,) * (len(new_shape) - 2) scale = scale.reshape(-1, *dim_ones) bias = bias.reshape(-1, *dim_ones) res = scale * (x_reshaped - mean) / np.sqrt(var + epsilon) + bias return res.reshape(x.shape) class GroupNormalization(Base): @staticmethod def export() -> None: x = np.random.randn(3, 4, 2, 2).astype(np.float32) num_groups = 2 scale = np.random.randn(num_groups).astype(np.float32) bias = np.random.randn(num_groups).astype(np.float32) y = _group_normalization(x, num_groups, scale, bias).astype(np.float32) node = onnx.helper.make_node( "GroupNormalization", inputs=["x", "scale", "bias"], outputs=["y"], num_groups=num_groups, ) expect( node, inputs=[x, scale, bias], outputs=[y], name="test_group_normalization_example", ) x = np.random.randn(3, 4, 2, 2).astype(np.float32) num_groups = 2 scale = np.random.randn(num_groups).astype(np.float32) bias = np.random.randn(num_groups).astype(np.float32) epsilon = 1e-2 y = _group_normalization(x, num_groups, scale, bias, epsilon).astype(np.float32) node = onnx.helper.make_node( "GroupNormalization", inputs=["x", "scale", "bias"], outputs=["y"], epsilon=epsilon, num_groups=num_groups, ) expect( node, inputs=[x, scale, bias], outputs=[y], name="test_group_normalization_epsilon", )
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59,142
onnx/onnx
refs/heads/main
/onnx/reference/ops/__init__.py
# Copyright (c) ONNX Project Contributors # Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 from onnx.reference.ops._op_list import load_op
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59,143
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_random_normal.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,W0221 from onnx.reference.ops._op_common_random import _CommonRandom class RandomNormal(_CommonRandom): def _run(self, dtype=None, mean=None, scale=None, seed=None, shape=None): # type: ignore state = self._get_state(seed) numpy_type = self.numpy_type(dtype) res = state.randn(*shape).astype(numpy_type) # type: ignore res *= scale # type: ignore res += mean # type: ignore return (res.astype(numpy_type),)
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59,144
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_hann_window.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.ops._op_common_window import _CommonWindow class HannWindow(_CommonWindow): """ Returns :math:`\\omega_n = \\sin^2\\left( \\frac{\\pi n}{N-1} \\right)` where *N* is the window length. See `hann_window <https://pytorch.org/docs/stable/generated/torch.hann_window.html>`_ """ def _run(self, size, output_datatype=None, periodic=None): # type: ignore ni, N_1 = self._begin(size, periodic, output_datatype) res = np.sin(ni * np.pi / N_1) ** 2 return self._end(size, res, output_datatype)
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59,145
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_softmax_cross_entropy_loss.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0912,R0913,R0914,W0221 import numpy as np from onnx.reference.op_run import OpRun def softmaxcrossentropy( # type: ignore x, target, weight=None, reduction="mean", ignore_index=None, get_log_prob=None ): input_shape = x.shape if len(input_shape) == 1: raise RuntimeError(f"Unsupported shape {input_shape!r}.") target_shape = target.shape N = input_shape[0] C = input_shape[1] # compute log_softmax max_x = np.max(x, axis=1, keepdims=True) exp_x = np.exp(x - max_x) p = exp_x / np.sum(exp_x, axis=1, keepdims=True) inp = np.log(p) log_prob = None if get_log_prob is True: log_prob = np.copy(inp) # initialize the positional weights when required gather_weight = None if weight is not None: gather_weight = np.take(weight, np.array(target, dtype=np.int32), mode="clip") if ignore_index is not None: gather_weight = np.where(target == ignore_index, 0, gather_weight).astype( dtype=x.dtype ) elif ignore_index is not None: gather_weight = np.where(target == ignore_index, 0, 1).astype(dtype=x.dtype) # if input is 4-d and above, make it 3-d if len(input_shape) != 3: inp = inp.reshape((N, C, -1)) target = target.reshape((N, -1)) # Get a dimension from the reshaped input. # If the original input shape is [N, C, H, W], # the D here should be H * W because we reshape # [N, C, H, W] to [N, C, H * W]. D = inp.shape[2] neg_gather_element_input = np.zeros((N, D), dtype=x.dtype) for i in range(N): for d in range(D): if target[i, d] != ignore_index: neg_gather_element_input[i, d] = -inp[i, target[i, d], d] loss = neg_gather_element_input # if the input was 4-d or above reshape to the right shape if len(input_shape) != 3: loss = loss.reshape(target_shape) # apply the weights when required if gather_weight is not None: loss = gather_weight * loss if reduction == "mean": loss = loss.sum() / gather_weight.sum() if get_log_prob is True: return loss, log_prob return (loss,) if reduction == "mean": loss = np.mean(loss) elif reduction == "sum": loss = np.sum(loss) loss = loss.astype(x.dtype) if get_log_prob is True: return loss, log_prob.astype(x.dtype) # type: ignore[union-attr] return (loss,) class SoftmaxCrossEntropyLoss(OpRun): def _run(self, x, target, weight=None, ignore_index=None, reduction=None): # type: ignore n_outputs = len(self.onnx_node.output) # type: ignore return softmaxcrossentropy( x, target, weight=weight, reduction=reduction, ignore_index=ignore_index, get_log_prob=n_outputs == 2, )
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59,146
onnx/onnx
refs/heads/main
/tools/protoc-gen-mypy.py
#!/usr/bin/env python # Copyright (c) ONNX Project Contributors # Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 # Taken from https://github.com/dropbox/mypy-protobuf/blob/d984389124eae6dbbb517f766b9266bb32171510/python/protoc-gen-mypy # (Apache 2.0 License) # with own fixes to # - appease flake8 # - exit without error when protobuf isn't installed # - fix recognition of whether an identifier is defined locally # (unfortunately, we use a python package name ONNX_NAMESPACE_FOO_BAR_FOR_CI # on CI, which by the original protoc-gen-mypy script was recognized to be # camel case and therefore handled as an entry in the local package) """Protoc Plugin to generate mypy stubs. Loosely based on @zbarsky's go implementation""" import sys from collections import defaultdict from contextlib import contextmanager from typing import Any, Callable, Dict, Generator, List, Optional, Set, cast try: import google.protobuf.descriptor_pb2 as d_typed from google.protobuf.compiler import plugin_pb2 as plugin except ImportError as e: sys.stderr.write(f"Failed to generate mypy stubs: {e}\n") sys.exit(0) # Hax to get around fact that google protobuf libraries aren't in typeshed yet d: Any = d_typed # Split the string so phabricator doesn't think this file is generated GENERATED = "@ge" + "nerated" HEADER = ( f"# {GENERATED} by protoc-gen-mypy.py. Do not edit!\n" "# mypy: disable-error-code=override\n" ) class Descriptors: def __init__(self, request: plugin.CodeGeneratorRequest) -> None: files = {f.name: f for f in request.proto_file} to_generate = {n: files[n] for n in request.file_to_generate} self.files: Dict[str, d.FileDescriptorProto] = files self.to_generate: Dict[str, d.FileDescriptorProto] = to_generate self.messages: Dict[str, d.DescriptorProto] = {} self.message_to_fd: Dict[str, d.FileDescriptorProto] = {} def _add_enums( enums: d.EnumDescriptorProto, prefix: str, fd: d.FileDescriptorProto ) -> None: for enum in enums: self.message_to_fd[prefix + enum.name] = fd def _add_messages( messages: d.DescriptorProto, prefix: str, fd: d.FileDescriptorProto ) -> None: for message in messages: self.messages[prefix + message.name] = message self.message_to_fd[prefix + message.name] = fd sub_prefix = prefix + message.name + "." _add_messages(message.nested_type, sub_prefix, fd) _add_enums(message.enum_type, sub_prefix, fd) for fd in request.proto_file: start_prefix = "." + fd.package + "." _add_messages(fd.message_type, start_prefix, fd) _add_enums(fd.enum_type, start_prefix, fd) class PkgWriter: """Writes a single pyi file""" def __init__(self, fd: d.FileDescriptorProto, descriptors: Descriptors) -> None: self.fd = fd self.descriptors = descriptors self.lines: List[str] = [] self.indent = "" # dictionary of x->y for `from {x} import {y}` self.imports: Dict[str, Set[str]] = defaultdict(set) self.locals: Set[str] = set() def _import(self, path: str, name: str, import_as: Optional[str] = None) -> str: """Imports a stdlib path and returns a handle to it eg. self._import("typing", "Optional") -> "Optional" """ imp = path.replace("/", ".") if import_as is not None: self.imports[imp].add(f"{name} as {import_as}") return import_as else: self.imports[imp].add(name) return name def _import_message(self, type_name: d.FieldDescriptorProto) -> str: """Import a referenced message and return a handle""" name = cast(str, type_name) if name[0] == "." and name[1].isupper() and name[2].islower(): # Message defined in this file return name[1:] message_fd = self.descriptors.message_to_fd[name] if message_fd.name == self.fd.name: # message defined in this package split = name.split(".") for i, segment in enumerate(split): if segment and segment[0].isupper() and segment[1].islower(): return ".".join(split[i:]) # Not in package. Must import split = name.split(".") for i, segment in enumerate(split): if segment and segment[0].isupper() and segment[1].islower(): assert message_fd.name.endswith(".proto") import_name = self._import( message_fd.name[:-6].replace("-", "_") + "_pb2", segment ) remains = ".".join(split[i + 1 :]) if not remains: return import_name raise AssertionError("Don't support nested imports yet") # return new_nested_import(import_name, remains) raise AssertionError("Could not parse local name " + name) @contextmanager # type: ignore def _indent(self) -> Generator[None, None, None]: self.indent = self.indent + " " yield self.indent = self.indent[:-4] def _write_line(self, line: str, *args: str) -> None: self.lines.append(self.indent + line.format(*args)) def write_enums(self, enums: List[d.EnumDescriptorProto]) -> None: line = self._write_line for enum in enums: line("class {}(int):", enum.name) with self._indent(): line("@classmethod") line("def Name(cls, number: int) -> str: ...") line("@classmethod") line("def Value(cls, name: str) -> int: ...") line("@classmethod") line("def keys(cls) -> {}[str]: ...", self._import("typing", "List")) line("@classmethod") line("def values(cls) -> {}[int]: ...", self._import("typing", "List")) line("@classmethod") line( "def items(cls) -> {}[{}[str, int]]: ...", self._import("typing", "List"), self._import("typing", "Tuple"), ) for val in enum.value: line( "{} = {}({}, {})", val.name, self._import("typing", "cast"), enum.name, val.number, ) line("") def write_messages(self, messages: List[d.DescriptorProto], prefix: str) -> None: line = self._write_line message_class = self._import("google.protobuf.message", "Message") for desc in messages: self.locals.add(desc.name) qualified_name = prefix + desc.name line("class {}({}):", desc.name, message_class) with self._indent(): # Nested enums/messages self.write_enums(desc.enum_type) self.write_messages(desc.nested_type, qualified_name + ".") # Scalar fields for field in [f for f in desc.field if is_scalar(f)]: if field.label == d.FieldDescriptorProto.LABEL_REPEATED: container = self._import( "google.protobuf.internal.containers", "RepeatedScalarFieldContainer", ) line( "{} = ... # type: {}[{}]", field.name, container, self.python_type(field), ) else: line("{} = ... # type: {}", field.name, self.python_type(field)) line("") # Getters for non-scalar fields for field in [f for f in desc.field if not is_scalar(f)]: line("@property") if field.label == d.FieldDescriptorProto.LABEL_REPEATED: msg = self.descriptors.messages[field.type_name] if msg.options.map_entry: # map generates a special Entry wrapper message container = self._import("typing", "MutableMapping") line( "def {}(self) -> {}[{}, {}]: ...", field.name, container, self.python_type(msg.field[0]), self.python_type(msg.field[1]), ) else: container = self._import( "google.protobuf.internal.containers", "RepeatedCompositeFieldContainer", ) line( "def {}(self) -> {}[{}]: ...", field.name, container, self.python_type(field), ) else: line( "def {}(self) -> {}: ...", field.name, self.python_type(field), ) line("") # Constructor line("def __init__(self,") with self._indent(): # Required args for field in [ f for f in desc.field if f.label == d.FieldDescriptorProto.LABEL_REQUIRED ]: line("{} : {},", field.name, self.python_type(field)) for field in [ f for f in desc.field if f.label != d.FieldDescriptorProto.LABEL_REQUIRED ]: if field.label == d.FieldDescriptorProto.LABEL_REPEATED: if ( field.type_name != "" and self.descriptors.messages[ field.type_name ].options.map_entry ): msg = self.descriptors.messages[field.type_name] line( "{} : {}[{}[{}, {}]] = None,", field.name, self._import("typing", "Optional", "OptionalType"), self._import("typing", "Mapping"), self.python_type(msg.field[0]), self.python_type(msg.field[1]), ) else: line( "{} : {}[{}[{}]] = None,", field.name, self._import("typing", "Optional", "OptionalType"), self._import("typing", "Iterable"), self.python_type(field), ) else: line( "{} : {}[{}] = None,", field.name, self._import("typing", "Optional", "OptionalType"), self.python_type(field), ) line(") -> None: ...") # Standard message methods line("@classmethod") line("def FromString(cls, s: bytes) -> {}: ...", qualified_name) line("def MergeFrom(self, other_msg: {}) -> None: ...", message_class) line("def CopyFrom(self, other_msg: {}) -> None: ...", message_class) line("") def write_services(self, services: d.ServiceDescriptorProto) -> None: line = self._write_line for service in services: # The service definition interface line( "class {}({}, metaclass={}):", service.name, self._import("google.protobuf.service", "Service"), self._import("abc", "ABCMeta"), ) with self._indent(): for method in service.method: line("@{}", self._import("abc", "abstractmethod")) line("def {}(self,", method.name) with self._indent(): line( "rpc_controller: {},", self._import("google.protobuf.service", "RpcController"), ) line("request: {},", self._import_message(method.input_type)) line( "done: {}[{}[[{}], None]],", self._import("typing", "Optional"), self._import("typing", "Callable"), self._import_message(method.output_type), ) line( ") -> {}[{}]: ...", self._import("concurrent.futures", "Future"), self._import_message(method.output_type), ) # The stub client line("class {}({}):", service.name + "_Stub", service.name) with self._indent(): line( "def __init__(self, rpc_channel: {}) -> None: ...", self._import("google.protobuf.service", "RpcChannel"), ) def python_type(self, field: d.FieldDescriptorProto) -> str: mapping: Dict[int, Callable[[], str]] = { d.FieldDescriptorProto.TYPE_DOUBLE: lambda: "float", d.FieldDescriptorProto.TYPE_FLOAT: lambda: "float", d.FieldDescriptorProto.TYPE_INT64: lambda: "int", d.FieldDescriptorProto.TYPE_UINT64: lambda: "int", d.FieldDescriptorProto.TYPE_FIXED64: lambda: "int", d.FieldDescriptorProto.TYPE_SFIXED64: lambda: "int", d.FieldDescriptorProto.TYPE_SINT64: lambda: "int", d.FieldDescriptorProto.TYPE_INT32: lambda: "int", d.FieldDescriptorProto.TYPE_UINT32: lambda: "int", d.FieldDescriptorProto.TYPE_FIXED32: lambda: "int", d.FieldDescriptorProto.TYPE_SFIXED32: lambda: "int", d.FieldDescriptorProto.TYPE_SINT32: lambda: "int", d.FieldDescriptorProto.TYPE_BOOL: lambda: "bool", d.FieldDescriptorProto.TYPE_STRING: lambda: "str", d.FieldDescriptorProto.TYPE_BYTES: lambda: "bytes", d.FieldDescriptorProto.TYPE_ENUM: lambda: self._import_message( field.type_name ), d.FieldDescriptorProto.TYPE_MESSAGE: lambda: self._import_message( field.type_name ), d.FieldDescriptorProto.TYPE_GROUP: lambda: self._import_message( field.type_name ), } assert field.type in mapping, "Unrecognized type: " + field.type return mapping[field.type]() def write(self) -> str: imports = [] for pkg, items in self.imports.items(): if pkg.startswith("google."): imports.append(f"from {pkg} import ( # type: ignore") else: imports.append(f"from {pkg} import (") for item in sorted(items): imports.append(f" {item},") imports.append(")\n") return "\n".join(imports + self.lines) def is_scalar(fd: d.FileDescriptorProto) -> bool: return not ( fd.type == d.FieldDescriptorProto.TYPE_MESSAGE or fd.type == d.FieldDescriptorProto.TYPE_GROUP ) def generate_mypy_stubs( descriptors: Descriptors, response: plugin.CodeGeneratorResponse ) -> None: for name, fd in descriptors.to_generate.items(): pkg_writer = PkgWriter(fd, descriptors) pkg_writer.write_enums(fd.enum_type) pkg_writer.write_messages(fd.message_type, "") pkg_writer.write_services(fd.service) assert name == fd.name assert fd.name.endswith(".proto") output = response.file.add() output.name = fd.name[:-6].replace("-", "_") + "_pb2.pyi" output.content = HEADER + pkg_writer.write() print("Writing mypy to", output.name, file=sys.stderr) def main() -> None: # Read request message from stdin data = sys.stdin.buffer.read() # Parse request request = plugin.CodeGeneratorRequest() request.ParseFromString(data) # Create response response = plugin.CodeGeneratorResponse() # Generate mypy generate_mypy_stubs(Descriptors(request), response) # Serialise response message output = response.SerializeToString() # Write to stdout sys.stdout.buffer.write(output) if __name__ == "__main__": main()
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59,147
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_string_split.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0912,R0913,W0221 from typing import Union import numpy as np from onnx.reference.op_run import OpRun _acceptable_str_dtypes = ("U", "O") def pad_empty_string( split_lists: Union[list, np.ndarray], padding_requirement: Union[list, int] ): # pylint: disable=unidiomatic-typecheck` if type(split_lists) is list: return split_lists + ["" for _ in range(padding_requirement)] elif type(split_lists) is np.ndarray: return list(map(pad_empty_string, split_lists, padding_requirement)) else: raise TypeError("Invalid array type") def split_with_padding(x, separator=None, maxsplit=None): split_lists = np.char.split(x.astype(np.str_), separator, maxsplit) # Find the maximum length after splitting num_splits = np.vectorize(len, otypes=[np.int64])(split_lists) padding_requirement = (np.max(num_splits, initial=0) - num_splits).tolist() # Add padding to lists that are shorter than the maximum length split_lists_padded = np.array( pad_empty_string(split_lists, padding_requirement), dtype=object ) if x.size == 0: split_lists_padded = split_lists_padded.reshape(*x.shape, 0) return split_lists_padded, num_splits class StringSplit(OpRun): def _run(self, x, delimiter=None, maxsplit=None): if delimiter == "": delimiter = None if x.dtype.kind not in _acceptable_str_dtypes: raise TypeError(f"Inputs must be string tensors, received dtype {x.dtype}") return split_with_padding(x, delimiter, maxsplit)
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59,148
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/max.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect from onnx.backend.test.case.utils import all_numeric_dtypes class Max(Base): @staticmethod def export() -> None: data_0 = np.array([3, 2, 1]).astype(np.float32) data_1 = np.array([1, 4, 4]).astype(np.float32) data_2 = np.array([2, 5, 3]).astype(np.float32) result = np.array([3, 5, 4]).astype(np.float32) node = onnx.helper.make_node( "Max", inputs=["data_0", "data_1", "data_2"], outputs=["result"], ) expect( node, inputs=[data_0, data_1, data_2], outputs=[result], name="test_max_example", ) node = onnx.helper.make_node( "Max", inputs=["data_0"], outputs=["result"], ) expect(node, inputs=[data_0], outputs=[data_0], name="test_max_one_input") result = np.maximum(data_0, data_1) node = onnx.helper.make_node( "Max", inputs=["data_0", "data_1"], outputs=["result"], ) expect( node, inputs=[data_0, data_1], outputs=[result], name="test_max_two_inputs" ) @staticmethod def export_max_all_numeric_types() -> None: for op_dtype in all_numeric_dtypes: data_0 = np.array([3, 2, 1]).astype(op_dtype) data_1 = np.array([1, 4, 4]).astype(op_dtype) result = np.array([3, 4, 4]).astype(op_dtype) node = onnx.helper.make_node( "Max", inputs=["data_0", "data_1"], outputs=["result"], ) expect( node, inputs=[data_0, data_1], outputs=[result], name=f"test_max_{np.dtype(op_dtype).name}", )
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59,149
onnx/onnx
refs/heads/main
/onnx/backend/test/case/model/expand.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 from typing import Sequence import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.model import expect class ExpandDynamicShape(Base): @staticmethod def export() -> None: def make_graph( node: onnx.helper.NodeProto, input_shape: Sequence[int], shape_shape: Sequence[int], output_shape: Sequence[int], ) -> onnx.helper.GraphProto: graph = onnx.helper.make_graph( nodes=[node], name="Expand", inputs=[ onnx.helper.make_tensor_value_info( "X", onnx.TensorProto.FLOAT, input_shape ), onnx.helper.make_tensor_value_info( "shape", onnx.TensorProto.INT64, shape_shape ), ], outputs=[ onnx.helper.make_tensor_value_info( "Y", onnx.TensorProto.FLOAT, output_shape ) ], ) return graph node = onnx.helper.make_node("Expand", ["X", "shape"], ["Y"], name="test") input_shape = [1, 3, 1] x = np.ones(input_shape, dtype=np.float32) # 1st testcase shape = np.array([3, 1], dtype=np.int64) y = x * np.ones(shape, dtype=np.float32) graph = make_graph(node, input_shape, shape.shape, y.shape) model = onnx.helper.make_model_gen_version( graph, producer_name="backend-test", opset_imports=[onnx.helper.make_opsetid("", 9)], ) expect(model, inputs=[x, shape], outputs=[y], name="test_expand_shape_model1") # 2nd testcase shape = np.array([1, 3], dtype=np.int64) y = x * np.ones(shape, dtype=np.float32) graph = make_graph(node, input_shape, shape.shape, y.shape) model = onnx.helper.make_model_gen_version( graph, producer_name="backend-test", opset_imports=[onnx.helper.make_opsetid("", 9)], ) expect(model, inputs=[x, shape], outputs=[y], name="test_expand_shape_model2") # 3rd testcase shape = np.array([3, 1, 3], dtype=np.int64) y = x * np.ones(shape, dtype=np.float32) graph = make_graph(node, input_shape, shape.shape, y.shape) model = onnx.helper.make_model_gen_version( graph, producer_name="backend-test", opset_imports=[onnx.helper.make_opsetid("", 9)], ) expect(model, inputs=[x, shape], outputs=[y], name="test_expand_shape_model3") # 4th testcase shape = np.array([3, 3, 1, 3], dtype=np.int64) y = x * np.ones(shape, dtype=np.float32) graph = make_graph(node, input_shape, shape.shape, y.shape) model = onnx.helper.make_model_gen_version( graph, producer_name="backend-test", opset_imports=[onnx.helper.make_opsetid("", 9)], ) expect(model, inputs=[x, shape], outputs=[y], name="test_expand_shape_model4")
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59,150
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/erf.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import math import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Erf(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "Erf", inputs=["x"], outputs=["y"], ) x = np.random.randn(1, 3, 32, 32).astype(np.float32) y = np.vectorize(math.erf)(x).astype(np.float32) expect(node, inputs=[x], outputs=[y], name="test_erf")
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59,151
onnx/onnx
refs/heads/main
/onnx/reference/ops/aionnxml/_common_classifier.py
# SPDX-License-Identifier: Apache-2.0 import numpy as np def compute_logistic(val: float) -> float: v = 1.0 / (1.0 + np.exp(-np.abs(val))) return (1.0 - v) if val < 0 else v # type: ignore logistic = np.vectorize(compute_logistic) def compute_softmax_zero(values: np.ndarray) -> np.ndarray: """ The function modifies the input inplace. """ v_max = values.max() exp_neg_v_max = np.exp(-v_max) s = 0 for i in range(len(values)): # pylint: disable=C0200 v = values[i] if v > 0.0000001 or v < -0.0000001: values[i] = np.exp(v - v_max) else: values[i] *= exp_neg_v_max s += values[i] if s == 0: values[:] = 0.5 else: values[:] /= s return values def softmax_zero(values: np.ndarray) -> np.ndarray: "Modifications in place." if len(values.shape) == 1: compute_softmax_zero(values) return values for row in values: compute_softmax_zero(row) return values def softmax(values: np.ndarray) -> np.ndarray: "Modifications in place." if len(values.shape) == 2: v_max = values.max(axis=1, keepdims=1) # type: ignore values -= v_max np.exp(values, out=values) s = values.sum(axis=1, keepdims=1) # type: ignore values /= s return values v_max = values.max() values[:] = np.exp(values - v_max) this_sum = values.sum() values /= this_sum return values def erf_inv(x: float) -> float: sgn = -1.0 if x < 0 else 1.0 x = (1.0 - x) * (1 + x) if x == 0: return 0 log = np.log(x) v = 2.0 / (np.pi * 0.147) + 0.5 * log v2 = 1.0 / 0.147 * log v3 = -v + np.sqrt(v * v - v2) x = sgn * np.sqrt(v3) return x def compute_probit(val: float) -> float: return 1.41421356 * erf_inv(val * 2 - 1) probit = np.vectorize(compute_probit) def expit(x: np.ndarray) -> np.ndarray: return (1.0 / (1.0 + np.exp(-x))).astype(x.dtype)
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59,152
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/reducel1.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class ReduceL1(Base): @staticmethod def export_do_not_keepdims() -> None: shape = [3, 2, 2] axes = np.array([2], dtype=np.int64) keepdims = 0 node = onnx.helper.make_node( "ReduceL1", inputs=["data", "axes"], outputs=["reduced"], keepdims=keepdims, ) data = np.reshape(np.arange(1, np.prod(shape) + 1, dtype=np.float32), shape) # print(data) # [[[1., 2.], [3., 4.]], [[5., 6.], [7., 8.]], [[9., 10.], [11., 12.]]] reduced = np.sum(a=np.abs(data), axis=tuple(axes), keepdims=keepdims == 1) # print(reduced) # [[3., 7.], [11., 15.], [19., 23.]] expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_l1_do_not_keepdims_example", ) np.random.seed(0) data = np.random.uniform(-10, 10, shape).astype(np.float32) reduced = np.sum(a=np.abs(data), axis=tuple(axes), keepdims=keepdims == 1) expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_l1_do_not_keepdims_random", ) @staticmethod def export_keepdims() -> None: shape = [3, 2, 2] axes = np.array([2], dtype=np.int64) keepdims = 1 node = onnx.helper.make_node( "ReduceL1", inputs=["data", "axes"], outputs=["reduced"], keepdims=keepdims, ) data = np.reshape(np.arange(1, np.prod(shape) + 1, dtype=np.float32), shape) # print(data) # [[[1., 2.], [3., 4.]], [[5., 6.], [7., 8.]], [[9., 10.], [11., 12.]]] reduced = np.sum(a=np.abs(data), axis=tuple(axes), keepdims=keepdims == 1) # print(reduced) # [[[3.], [7.]], [[11.], [15.]], [[19.], [23.]]] expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_l1_keep_dims_example", ) np.random.seed(0) data = np.random.uniform(-10, 10, shape).astype(np.float32) reduced = np.sum(a=np.abs(data), axis=tuple(axes), keepdims=keepdims == 1) expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_l1_keep_dims_random", ) @staticmethod def export_default_axes_keepdims() -> None: shape = [3, 2, 2] axes = np.array([], dtype=np.int64) keepdims = 1 node = onnx.helper.make_node( "ReduceL1", inputs=["data", "axes"], outputs=["reduced"], keepdims=keepdims ) data = np.reshape(np.arange(1, np.prod(shape) + 1, dtype=np.float32), shape) # print(data) # [[[1., 2.], [3., 4.]], [[5., 6.], [7., 8.]], [[9., 10.], [11., 12.]]] reduced = np.sum(a=np.abs(data), axis=None, keepdims=keepdims == 1) # print(reduced) # [[[78.]]] expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_l1_default_axes_keepdims_example", ) np.random.seed(0) data = np.random.uniform(-10, 10, shape).astype(np.float32) reduced = np.sum(a=np.abs(data), axis=None, keepdims=keepdims == 1) expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_l1_default_axes_keepdims_random", ) @staticmethod def export_negative_axes_keepdims() -> None: shape = [3, 2, 2] axes = np.array([-1], dtype=np.int64) keepdims = 1 node = onnx.helper.make_node( "ReduceL1", inputs=["data", "axes"], outputs=["reduced"], keepdims=keepdims, ) data = np.reshape(np.arange(1, np.prod(shape) + 1, dtype=np.float32), shape) # print(data) # [[[1., 2.], [3., 4.]], [[5., 6.], [7., 8.]], [[9., 10.], [11., 12.]]] reduced = np.sum(a=np.abs(data), axis=tuple(axes), keepdims=keepdims == 1) # print(reduced) # [[[3.], [7.]], [[11.], [15.]], [[19.], [23.]]] expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_l1_negative_axes_keep_dims_example", ) np.random.seed(0) data = np.random.uniform(-10, 10, shape).astype(np.float32) reduced = np.sum(a=np.abs(data), axis=tuple(axes), keepdims=keepdims == 1) expect( node, inputs=[data, axes], outputs=[reduced], name="test_reduce_l1_negative_axes_keep_dims_random", )
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refs/heads/main
/onnx/reference/ops_optimized/op_conv_optimized.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0912,R0913,R0914,R0915,R1702,W0221 import numpy as np from onnx.reference.op_run import OpRun def _make_ind(dim, shape): m = np.empty(shape, dtype=np.int64) ind = [slice(0, shape[i]) for i in range(len(shape))] new_shape = [1] * len(shape) new_shape[dim] = shape[dim] first = np.arange(shape[dim]).reshape(new_shape) m[tuple(ind)] = first return m def im2col_fast(X, kernel_shape, pads, strides): n_dims = len(kernel_shape) m, n_C = X.shape[:2] kernel_size = np.prod(kernel_shape) shape_out = [] for i, dim in enumerate(kernel_shape): dx = X.shape[2 + i] shape_out.append((dx + pads[i] + pads[i + n_dims] - dim) // strides[i] + 1) indices = [] for i in range(len(shape_out)): kind = _make_ind(i, kernel_shape) iind = _make_ind(i, shape_out) * strides[i] i = np.tile(kind.ravel(), n_C).reshape(-1, 1) + iind.reshape(1, -1) indices.append(i) d = np.repeat(np.arange(n_C), kernel_size).reshape(-1, 1) nc = [(0, 0)] * 2 padding = [(pads[i], pads[i + n_dims]) for i in range(n_dims)] X_padded = np.pad(X, tuple(nc) + tuple(padding), mode="constant") getitem = (slice(0, m), d, *indices) cols = X_padded[getitem] # type: ignore[index] conc_cols = np.concatenate(cols, axis=-1) return conc_cols, tuple(shape_out) def _conv_implementation_im2col( # type: ignore X, W, B, auto_pad, dilations, group, kernel_shape, pads, strides ): if dilations is None: dilations = [1 for s in X.shape[2:]] if kernel_shape is None: kernel_shape = W.shape[2:] if pads is None: pads = [0 for s in X.shape[2:]] * 2 if strides is None: strides = [1 for s in X.shape[2:]] kernel_shape = tuple(kernel_shape) if X.shape[1] != W.shape[1] * group or W.shape[0] % group != 0: raise ValueError( f"Shape inconsistencies, X.shape={X.shape}, W.shape={W.shape}, group={group}, " f"W should be {(W.shape[0], X.shape[1] // group, np.prod(W.shape[1:]) // X.shape[1] * group)}." ) if group > 1: res = [] td = 0 mg = W.shape[0] // group dw = W.shape[1] for b in range(X.shape[0]): for g in range(group): gx = X[b : b + 1, g * dw : (g + 1) * dw] gw = W[g * mg : (g + 1) * mg] try: cv = _conv_implementation_im2col( gx, gw, None, auto_pad, dilations, 1, kernel_shape, pads, strides, ) except (ValueError, RuntimeError) as e: raise ValueError( f"Shape inconsistencies, X.shape={X.shape}, W.shape={W.shape}, group={g}/{group}, " f"gx.shape={gx.shape}, gw.shape={gw.shape}, auto_pad={auto_pad}, " f"dilations={dilations}, kernel_shape={kernel_shape}, pads={pads}, " f"strides={strides}." ) from e if b == 0: td += cv.shape[1] res.append((b, cv)) new_shape = [X.shape[0], *list(res[0][1].shape[1:])] new_shape[1] = td final = np.zeros(tuple(new_shape), dtype=res[0][1].dtype) p = 0 for b, cv in res: final[b : b + 1, p : p + cv.shape[1]] = cv p += cv.shape[1] if p >= final.shape[1]: p = 0 if B is not None: new_shape = [1 for s in final.shape] new_shape[1] = B.shape[0] b = B.reshape(tuple(new_shape)) final += b return final if dilations[0] != 1 or min(dilations) != max(dilations): # Let's compute the dilated kernel. nd = len(dilations) new_kernel_shape = [] new_shape = list(W.shape[:-nd]) for i, d in enumerate(dilations): di = len(W.shape) - nd + i new_shape.append(W.shape[di] + (W.shape[di] - 1) * (d - 1)) new_kernel_shape.append(kernel_shape[i] + (kernel_shape[i] - 1) * (d - 1)) new_w = np.zeros(tuple(new_shape), dtype=W.dtype) indices = [slice(0, new_w.shape[0]), slice(0, new_w.shape[1])] for i, d in enumerate(dilations): di = len(W.shape) - nd + i indices.append(slice(0, new_w.shape[di], d)) new_w[tuple(indices)] = W W = new_w kernel_shape = new_kernel_shape if auto_pad in {"SAME_LOWER", "SAME_UPPER", "VALID"}: head = [] tail = [] for i in range(len(X.shape) - 2): d = X.shape[i] target_size = (d + strides[i] - 1) // strides[i] pad_needed = (target_size - 1) * strides[i] + kernel_shape[i] - d if auto_pad == "SAME_LOWER": pad_head = (pad_needed + 1) // 2 else: pad_head = pad_needed // 2 pad_tail = pad_needed - pad_head head.append(pad_head) tail.append(pad_tail) pads = head + tail c2, out_shape = im2col_fast(X, kernel_shape, pads, strides) w_reshaped = W.reshape((-1, c2.shape[0])) mul = w_reshaped @ c2 mul = mul.reshape((W.shape[0], X.shape[0], *out_shape)) perm = (1, 0, *tuple(np.arange(len(X.shape) - 2) + 2)) mul = mul.transpose(perm) if B is not None: if B.size == 1: return mul + B new_shape = [1] * len(mul.shape) new_shape[1] = -1 mul += B.reshape(tuple(new_shape)) return mul class Conv(OpRun): def _run( # type: ignore self, X, W, B=None, auto_pad=None, dilations=None, group=None, kernel_shape=None, pads=None, strides=None, ): if len(X.shape) < 3: raise ValueError( f"X must have at least 3 dimensions but its shape is {X.shape}." ) return ( # _conv_implementation( _conv_implementation_im2col( X, W, B, auto_pad, dilations, group, kernel_shape, pads, strides ).astype(X.dtype), )
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59,154
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/floor.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Floor(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "Floor", inputs=["x"], outputs=["y"], ) x = np.array([-1.5, 1.2, 2]).astype(np.float32) y = np.floor(x) # expected output [-2., 1., 2.] expect(node, inputs=[x], outputs=[y], name="test_floor_example") x = np.random.randn(3, 4, 5).astype(np.float32) y = np.floor(x) expect(node, inputs=[x], outputs=[y], name="test_floor")
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59,155
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_blackman_window.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221 import numpy as np from onnx.reference.ops._op_common_window import _CommonWindow class BlackmanWindow(_CommonWindow): """ Returns :math:`\\omega_n = 0.42 - 0.5 \\cos \\left( \\frac{2\\pi n}{N-1} \\right) + 0.08 \\cos \\left( \\frac{4\\pi n}{N-1} \\right)` where *N* is the window length. See `blackman_window <https://pytorch.org/docs/stable/generated/torch.blackman_window.html>`_ """ def _run(self, size, output_datatype=None, periodic=None): # type: ignore ni, N_1 = np.arange(size), size if periodic == 0: N_1 = N_1 - 1 alpha = 0.42 beta = 0.08 pi = np.pi y = np.cos((ni * (pi * 2)) / N_1) * (-0.5) y += np.cos((ni * (pi * 4)) / N_1) * beta y += alpha return self._end(size, y, output_datatype)
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59,156
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/bitwisexor.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np # type: ignore import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect from onnx.numpy_helper import create_random_int class BitwiseXor(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "BitwiseXor", inputs=["x", "y"], outputs=["bitwisexor"], ) # 2d x = create_random_int((3, 4), np.int32) y = create_random_int((3, 4), np.int32) z = np.bitwise_xor(x, y) expect(node, inputs=[x, y], outputs=[z], name="test_bitwise_xor_i32_2d") # 3d x = create_random_int((3, 4, 5), np.int16) y = create_random_int((3, 4, 5), np.int16) z = np.bitwise_xor(x, y) expect(node, inputs=[x, y], outputs=[z], name="test_bitwise_xor_i16_3d") @staticmethod def export_bitwiseor_broadcast() -> None: node = onnx.helper.make_node( "BitwiseXor", inputs=["x", "y"], outputs=["bitwisexor"], ) # 3d vs 1d x = create_random_int((3, 4, 5), np.uint64) y = create_random_int((5,), np.uint64) z = np.bitwise_xor(x, y) expect( node, inputs=[x, y], outputs=[z], name="test_bitwise_xor_ui64_bcast_3v1d" ) # 4d vs 3d x = create_random_int((3, 4, 5, 6), np.uint8) y = create_random_int((4, 5, 6), np.uint8) z = np.bitwise_xor(x, y) expect(node, inputs=[x, y], outputs=[z], name="test_bitwise_xor_ui8_bcast_4v3d")
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59,157
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/round.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Round(Base): @staticmethod def export() -> None: node = onnx.helper.make_node( "Round", inputs=["x"], outputs=["y"], ) x = np.array( [ 0.1, 0.5, 0.9, 1.2, 1.5, 1.8, 2.3, 2.5, 2.7, -1.1, -1.5, -1.9, -2.2, -2.5, -2.8, ] ).astype(np.float32) y = np.array( [ 0.0, 0.0, 1.0, 1.0, 2.0, 2.0, 2.0, 2.0, 3.0, -1.0, -2.0, -2.0, -2.0, -2.0, -3.0, ] ).astype( np.float32 ) # expected output expect(node, inputs=[x], outputs=[y], name="test_round")
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59,158
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_random_normal_like.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,W0221 from onnx.helper import np_dtype_to_tensor_dtype from onnx.reference.ops._op_common_random import _CommonRandom class RandomNormalLike(_CommonRandom): def _run(self, x, dtype=None, mean=None, scale=None, seed=None): # type: ignore if dtype is None: dtype = np_dtype_to_tensor_dtype(x.dtype) dtype = self._dtype(x, dtype=dtype) state = self._get_state(seed) res = state.randn(*x.shape).astype(dtype) res *= scale # type: ignore res += mean # type: ignore return (res.astype(dtype),)
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59,159
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_conv_integer.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,W0221 import numpy as np from onnx.reference.op_run import OpRun from onnx.reference.ops.op_conv import _conv_implementation class ConvInteger(OpRun): def _run( # type: ignore self, X, W, x_zero_point=None, w_zero_point=None, auto_pad=None, dilations=None, group=None, kernel_shape=None, pads=None, strides=None, ): if len(X.shape) < 3: raise ValueError( f"X must have at least 3 dimensions but its shape is {X.shape}." ) auto_pad = auto_pad or self.auto_pad # type: ignore dilations = dilations or self.dilations # type: ignore group = group or self.group # type: ignore kernel_shape = kernel_shape or self.kernel_shape # type: ignore pads = pads or self.pads # type: ignore strides = strides or self.strides # type: ignore X = X.astype(np.int32) if x_zero_point: X -= x_zero_point W = W.astype(np.int32) if w_zero_point: W -= w_zero_point return ( _conv_implementation( X, W, None, auto_pad, dilations, group, kernel_shape, pads, strides ).astype(np.int32), )
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59,160
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/cast.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import sys import numpy as np import onnx from onnx import TensorProto, helper from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect from onnx.helper import ( float32_to_float8e4m3, float32_to_float8e5m2, make_tensor, tensor_dtype_to_field, ) from onnx.numpy_helper import float8e4m3_to_float32, float8e5m2_to_float32 class Cast(Base): @staticmethod def export() -> None: shape = (3, 4) test_cases = [ ("FLOAT", "FLOAT16"), ("FLOAT", "DOUBLE"), ("FLOAT16", "FLOAT"), ("FLOAT16", "DOUBLE"), ("DOUBLE", "FLOAT"), ("DOUBLE", "FLOAT16"), ("FLOAT", "STRING"), ("STRING", "FLOAT"), ("FLOAT", "BFLOAT16"), ("BFLOAT16", "FLOAT"), ("FLOAT", "FLOAT8E4M3FN"), ("FLOAT16", "FLOAT8E4M3FN"), ("FLOAT", "FLOAT8E4M3FNUZ"), ("FLOAT16", "FLOAT8E4M3FNUZ"), ("FLOAT8E4M3FN", "FLOAT"), ("FLOAT8E4M3FN", "FLOAT16"), ("FLOAT8E4M3FNUZ", "FLOAT"), ("FLOAT8E4M3FNUZ", "FLOAT16"), ("FLOAT", "FLOAT8E5M2"), ("FLOAT16", "FLOAT8E5M2"), ("FLOAT", "FLOAT8E5M2FNUZ"), ("FLOAT16", "FLOAT8E5M2FNUZ"), ("FLOAT8E5M2", "FLOAT"), ("FLOAT8E5M2", "FLOAT16"), ("FLOAT8E5M2FNUZ", "FLOAT"), ("FLOAT8E5M2FNUZ", "FLOAT16"), ] vect_float32_to_float8e4m3 = np.vectorize(float32_to_float8e4m3) vect_float32_to_float8e5m2 = np.vectorize(float32_to_float8e5m2) f8_types = ("FLOAT8E4M3FN", "FLOAT8E4M3FNUZ", "FLOAT8E5M2", "FLOAT8E5M2FNUZ") for from_type, to_type in test_cases: input_type_proto = None output_type_proto = None if from_type == "BFLOAT16" or to_type == "BFLOAT16": np_fp32 = np.array( [ "0.47892547", "0.48033667", "0.49968487", "0.81910545", "0.47031248", "0.816468", "0.21087195", "0.7229038", "NaN", "INF", "+INF", "-INF", ], dtype=np.float32, ) little_endisan = sys.byteorder == "little" np_uint16_view = np_fp32.view(dtype=np.uint16) np_bfp16 = ( np_uint16_view[1::2] if little_endisan else np_uint16_view[0::2] ) if to_type == "BFLOAT16": assert from_type == "FLOAT" input = np_fp32.reshape([3, 4]) output = np_bfp16.reshape([3, 4]) input_type_proto = onnx.helper.make_tensor_type_proto( int(TensorProto.FLOAT), input.shape ) output_type_proto = onnx.helper.make_tensor_type_proto( int(TensorProto.BFLOAT16), output.shape ) else: assert to_type == "FLOAT" input = np_bfp16.reshape([3, 4]) # convert bfloat to FLOAT np_fp32_zeros = np.zeros((len(np_bfp16) * 2,), dtype=np.uint16) if little_endisan: np_fp32_zeros[1::2] = np_bfp16 else: np_fp32_zeros[0::2] = np_bfp16 np_fp32_from_bfloat = np_fp32_zeros.view(dtype=np.float32) output = np_fp32_from_bfloat.reshape([3, 4]) input_type_proto = onnx.helper.make_tensor_type_proto( int(TensorProto.BFLOAT16), input.shape ) output_type_proto = onnx.helper.make_tensor_type_proto( int(TensorProto.FLOAT), output.shape ) elif from_type in f8_types or to_type in f8_types: np_fp32 = np.array( [ "0.47892547", "0.48033667", "0.49968487", "0.81910545", "0.47031248", "0.7229038", "1000000", "1e-7", "NaN", "INF", "+INF", "-INF", ], dtype=np.float32, ) if from_type == "FLOAT": input_values = np_fp32 input = make_tensor( "x", TensorProto.FLOAT, [3, 4], np_fp32.tolist() ) elif from_type == "FLOAT16": input_values = np_fp32.astype(np.float16).astype(np.float32) input = make_tensor( "x", TensorProto.FLOAT16, [3, 4], input_values.tolist() ) elif from_type == "FLOAT8E4M3FN": input_values = float8e4m3_to_float32( vect_float32_to_float8e4m3(np_fp32) ) input = make_tensor( "x", TensorProto.FLOAT8E4M3FN, [3, 4], input_values.tolist() ) elif from_type == "FLOAT8E4M3FNUZ": input_values = float8e4m3_to_float32( vect_float32_to_float8e4m3(np_fp32, uz=True), uz=True ) input = make_tensor( "x", TensorProto.FLOAT8E4M3FNUZ, [3, 4], input_values.tolist() ) elif from_type == "FLOAT8E5M2": input_values = float8e5m2_to_float32( vect_float32_to_float8e5m2(np_fp32) ) input = make_tensor( "x", TensorProto.FLOAT8E5M2, [3, 4], input_values.tolist() ) elif from_type == "FLOAT8E5M2FNUZ": input_values = float8e5m2_to_float32( vect_float32_to_float8e5m2(np_fp32, fn=True, uz=True), fn=True, uz=True, ) input = make_tensor( "x", TensorProto.FLOAT8E5M2FNUZ, [3, 4], input_values.tolist() ) else: raise ValueError( "Conversion from {from_type} to {to_type} is not tested." ) if to_type == "FLOAT8E4M3FN": expected = float8e4m3_to_float32( vect_float32_to_float8e4m3(input_values) ) elif to_type == "FLOAT8E4M3FNUZ": expected = float8e4m3_to_float32( vect_float32_to_float8e4m3(input_values, uz=True), uz=True ) elif to_type == "FLOAT8E5M2": expected = float8e5m2_to_float32( vect_float32_to_float8e5m2(input_values) ) elif to_type == "FLOAT8E5M2FNUZ": expected = float8e5m2_to_float32( vect_float32_to_float8e5m2(input_values, fn=True, uz=True), fn=True, uz=True, ) elif to_type == "FLOAT16": expected = input_values.astype(np.float16).astype(np.float32) elif to_type == "FLOAT": expected = input_values else: raise ValueError( "Conversion from {from_type} to {to_type} is not tested." ) expected_tensor = make_tensor( "x", getattr(TensorProto, to_type), [3, 4], expected.tolist() ) output = expected_tensor elif from_type != "STRING": input = np.random.random_sample(shape).astype( helper.tensor_dtype_to_np_dtype(getattr(TensorProto, from_type)) ) if to_type == "STRING": # Converting input to str, then give it object dtype for generating script ss = [] for i in input.flatten(): s = str(i).encode("utf-8") su = s.decode("utf-8") ss.append(su) output = np.array(ss).astype(object).reshape([3, 4]) else: output = input.astype( helper.tensor_dtype_to_np_dtype(getattr(TensorProto, to_type)) ) else: input = np.array( [ "0.47892547", "0.48033667", "0.49968487", "0.81910545", "0.47031248", "0.816468", "0.21087195", "0.7229038", "NaN", "INF", "+INF", "-INF", ], dtype=np.dtype(object), ).reshape([3, 4]) output = input.astype( helper.tensor_dtype_to_np_dtype(getattr(TensorProto, to_type)) ) node = onnx.helper.make_node( "Cast", inputs=["input"], outputs=["output"], to=getattr(TensorProto, to_type), ) if input_type_proto and output_type_proto: expect( node, inputs=[input], outputs=[output], name="test_cast_" + from_type + "_to_" + to_type, input_type_protos=[input_type_proto], output_type_protos=[output_type_proto], ) else: expect( node, inputs=[input], outputs=[output], name="test_cast_" + from_type + "_to_" + to_type, ) @staticmethod def export_saturate_false() -> None: test_cases = [ ("FLOAT", "FLOAT8E4M3FN"), ("FLOAT16", "FLOAT8E4M3FN"), ("FLOAT", "FLOAT8E4M3FNUZ"), ("FLOAT16", "FLOAT8E4M3FNUZ"), ("FLOAT", "FLOAT8E5M2"), ("FLOAT16", "FLOAT8E5M2"), ("FLOAT", "FLOAT8E5M2FNUZ"), ("FLOAT16", "FLOAT8E5M2FNUZ"), ] vect_float32_to_float8e4m3 = np.vectorize(float32_to_float8e4m3) vect_float32_to_float8e5m2 = np.vectorize(float32_to_float8e5m2) for from_type, to_type in test_cases: np_fp32 = np.array( [ "0.47892547", "0.48033667", "0.49968487", "0.81910545", "0.47031248", "0.7229038", "1000000", "1e-7", "NaN", "INF", "+INF", "-INF", ], dtype=np.float32, ) if from_type == "FLOAT": input_values = np_fp32 input = make_tensor("x", TensorProto.FLOAT, [3, 4], np_fp32.tolist()) elif from_type == "FLOAT16": input_values = np_fp32.astype(np.float16).astype(np.float32) input = make_tensor( "x", TensorProto.FLOAT16, [3, 4], input_values.tolist() ) else: raise ValueError( "Conversion from {from_type} to {to_type} is not tested." ) if to_type == "FLOAT8E4M3FN": expected = vect_float32_to_float8e4m3(input_values, saturate=False) elif to_type == "FLOAT8E4M3FNUZ": expected = vect_float32_to_float8e4m3( input_values, uz=True, saturate=False ) elif to_type == "FLOAT8E5M2": expected = vect_float32_to_float8e5m2(input_values, saturate=False) elif to_type == "FLOAT8E5M2FNUZ": expected = vect_float32_to_float8e5m2( input_values, fn=True, uz=True, saturate=False ) else: raise ValueError( "Conversion from {from_type} to {to_type} is not tested." ) ivals = bytes([int(i) for i in expected]) tensor = TensorProto() tensor.data_type = getattr(TensorProto, to_type) tensor.name = "x" tensor.dims.extend([3, 4]) field = tensor_dtype_to_field(tensor.data_type) getattr(tensor, field).extend(ivals) output = tensor node = onnx.helper.make_node( "Cast", inputs=["input"], outputs=["output"], to=getattr(TensorProto, to_type), saturate=0, ) expect( node, inputs=[input], outputs=[output], name="test_cast_no_saturate_" + from_type + "_to_" + to_type, )
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59,161
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/hammingwindow.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class HammingWindow(Base): @staticmethod def export() -> None: # Test periodic window node = onnx.helper.make_node( "HammingWindow", inputs=["x"], outputs=["y"], ) size = np.int32(10) a0 = 25 / 46 a1 = 1 - a0 y = a0 - a1 * np.cos(2 * np.pi * np.arange(0, size, 1, dtype=np.float32) / size) expect(node, inputs=[size], outputs=[y], name="test_hammingwindow") # Test symmetric window node = onnx.helper.make_node( "HammingWindow", inputs=["x"], outputs=["y"], periodic=0 ) size = np.int32(10) a0 = 25 / 46 a1 = 1 - a0 y = a0 - a1 * np.cos( 2 * np.pi * np.arange(0, size, 1, dtype=np.float32) / (size - 1) ) expect(node, inputs=[size], outputs=[y], name="test_hammingwindow_symmetric")
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59,162
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_lp_pool.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=W0221,R0913,R0914 import numpy as np from onnx.reference.ops.op_pool_common import CommonPool class LpPool(CommonPool): def _run( # type: ignore self, x, auto_pad=None, ceil_mode=None, dilations=None, kernel_shape=None, p=2, pads=None, strides=None, count_include_pad=None, ): # utilize AvgPool the same fashion Pytorch does. Note that there is a difference in computation. # it needs another PR to address. # https://github.com/pytorch/pytorch/blob/f58ba553b78db7f88477f9ba8c9333bd1590e30a/torch/nn/functional.py#L1015 power_average = CommonPool._run( self, "AVG", count_include_pad, np.power(np.absolute(x), p), auto_pad=auto_pad, ceil_mode=ceil_mode, dilations=dilations, kernel_shape=kernel_shape, pads=pads, strides=strides, ) kernel_element_count = np.prod(kernel_shape) return (np.power(kernel_element_count * power_average[0], 1.0 / p),)
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59,163
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/split.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Split(Base): @staticmethod def export_1d_opset13() -> None: node_input = np.array([1.0, 2.0, 3.0, 4.0, 5.0, 6.0]).astype(np.float32) node = onnx.helper.make_node( "Split", inputs=["input"], outputs=["output_1", "output_2", "output_3"], axis=0, ) expected_outputs = [ np.array([1.0, 2.0]).astype(np.float32), np.array([3.0, 4.0]).astype(np.float32), np.array([5.0, 6.0]).astype(np.float32), ] expect( node, inputs=[node_input], outputs=expected_outputs, name="test_split_equal_parts_1d_opset13", opset_imports=[onnx.helper.make_opsetid("", 13)], ) split = np.array([2, 4]).astype(np.int64) node = onnx.helper.make_node( "Split", inputs=["input", "split"], outputs=["output_1", "output_2"], axis=0, ) expected_outputs = [ np.array([1.0, 2.0]).astype(np.float32), np.array([3.0, 4.0, 5.0, 6.0]).astype(np.float32), ] expect( node, inputs=[node_input, split], outputs=expected_outputs, name="test_split_variable_parts_1d_opset13", opset_imports=[onnx.helper.make_opsetid("", 13)], ) @staticmethod def export_2d_opset13() -> None: node_input = np.array( [[1.0, 2.0, 3.0, 4.0, 5.0, 6.0], [7.0, 8.0, 9.0, 10.0, 11.0, 12.0]] ).astype(np.float32) node = onnx.helper.make_node( "Split", inputs=["input"], outputs=["output_1", "output_2"], axis=1 ) expected_outputs = [ np.array([[1.0, 2.0, 3.0], [7.0, 8.0, 9.0]]).astype(np.float32), np.array([[4.0, 5.0, 6.0], [10.0, 11.0, 12.0]]).astype(np.float32), ] expect( node, inputs=[node_input], outputs=expected_outputs, name="test_split_equal_parts_2d_opset13", opset_imports=[onnx.helper.make_opsetid("", 13)], ) split = np.array([2, 4]).astype(np.int64) node = onnx.helper.make_node( "Split", inputs=["input", "split"], outputs=["output_1", "output_2"], axis=1, ) expected_outputs = [ np.array([[1.0, 2.0], [7.0, 8.0]]).astype(np.float32), np.array([[3.0, 4.0, 5.0, 6.0], [9.0, 10.0, 11.0, 12.0]]).astype( np.float32 ), ] expect( node, inputs=[node_input, split], outputs=expected_outputs, name="test_split_variable_parts_2d_opset13", opset_imports=[onnx.helper.make_opsetid("", 13)], ) @staticmethod def export_default_values_opset13() -> None: node_input = np.array([1.0, 2.0, 3.0, 4.0, 5.0, 6.0]).astype(np.float32) # If axis is not specified, split is applied on default axis 0 node = onnx.helper.make_node( "Split", inputs=["input"], outputs=["output_1", "output_2", "output_3"] ) expected_outputs = [ np.array([1.0, 2.0]).astype(np.float32), np.array([3.0, 4.0]).astype(np.float32), np.array([5.0, 6.0]).astype(np.float32), ] expect( node, inputs=[node_input], outputs=expected_outputs, name="test_split_equal_parts_default_axis_opset13", opset_imports=[onnx.helper.make_opsetid("", 13)], ) split = np.array([2, 4]).astype(np.int64) node = onnx.helper.make_node( "Split", inputs=["input", "split"], outputs=["output_1", "output_2"] ) expected_outputs = [ np.array([1.0, 2.0]).astype(np.float32), np.array([3.0, 4.0, 5.0, 6.0]).astype(np.float32), ] expect( node, inputs=[node_input, split], outputs=expected_outputs, name="test_split_variable_parts_default_axis_opset13", opset_imports=[onnx.helper.make_opsetid("", 13)], ) @staticmethod def export_zero_size_splits_opset13() -> None: # 1-dimensional tensor with dimension_size=0 node_input = np.array([]).astype(np.float32) # Split emtpy tensor to tensors of size zero split = np.array([0, 0, 0]).astype(np.int64) node = onnx.helper.make_node( "Split", inputs=["input", "split"], outputs=["output_1", "output_2", "output_3"], ) expected_outputs = [ np.array([]).astype(np.float32), np.array([]).astype(np.float32), np.array([]).astype(np.float32), ] expect( node, inputs=[node_input, split], outputs=expected_outputs, name="test_split_zero_size_splits_opset13", opset_imports=[onnx.helper.make_opsetid("", 13)], ) @staticmethod def export_1d_opset18() -> None: node_input = np.array([1.0, 2.0, 3.0, 4.0, 5.0, 6.0]).astype(np.float32) node = onnx.helper.make_node( "Split", inputs=["input"], outputs=["output_1", "output_2", "output_3"], axis=0, num_outputs=3, ) expected_outputs = [ np.array([1.0, 2.0]).astype(np.float32), np.array([3.0, 4.0]).astype(np.float32), np.array([5.0, 6.0]).astype(np.float32), ] expect( node, inputs=[node_input], outputs=expected_outputs, name="test_split_equal_parts_1d_opset18", ) split = np.array([2, 4]).astype(np.int64) node = onnx.helper.make_node( "Split", inputs=["input", "split"], outputs=["output_1", "output_2"], axis=0, ) expected_outputs = [ np.array([1.0, 2.0]).astype(np.float32), np.array([3.0, 4.0, 5.0, 6.0]).astype(np.float32), ] expect( node, inputs=[node_input, split], outputs=expected_outputs, name="test_split_variable_parts_1d_opset18", ) @staticmethod def export_2d_opset18() -> None: node_input = np.array( [[1.0, 2.0, 3.0, 4.0, 5.0, 6.0], [7.0, 8.0, 9.0, 10.0, 11.0, 12.0]] ).astype(np.float32) node = onnx.helper.make_node( "Split", inputs=["input"], outputs=["output_1", "output_2"], axis=1, num_outputs=2, ) expected_outputs = [ np.array([[1.0, 2.0, 3.0], [7.0, 8.0, 9.0]]).astype(np.float32), np.array([[4.0, 5.0, 6.0], [10.0, 11.0, 12.0]]).astype(np.float32), ] expect( node, inputs=[node_input], outputs=expected_outputs, name="test_split_equal_parts_2d", ) split = np.array([2, 4]).astype(np.int64) node = onnx.helper.make_node( "Split", inputs=["input", "split"], outputs=["output_1", "output_2"], axis=1, ) expected_outputs = [ np.array([[1.0, 2.0], [7.0, 8.0]]).astype(np.float32), np.array([[3.0, 4.0, 5.0, 6.0], [9.0, 10.0, 11.0, 12.0]]).astype( np.float32 ), ] expect( node, inputs=[node_input, split], outputs=expected_outputs, name="test_split_variable_parts_2d_opset18", ) @staticmethod def export_default_values_opset18() -> None: node_input = np.array([1.0, 2.0, 3.0, 4.0, 5.0, 6.0]).astype(np.float32) # If axis is not specified, split is applied on default axis 0 node = onnx.helper.make_node( "Split", inputs=["input"], outputs=["output_1", "output_2", "output_3"], num_outputs=3, ) expected_outputs = [ np.array([1.0, 2.0]).astype(np.float32), np.array([3.0, 4.0]).astype(np.float32), np.array([5.0, 6.0]).astype(np.float32), ] expect( node, inputs=[node_input], outputs=expected_outputs, name="test_split_equal_parts_default_axis_opset18", ) split = np.array([2, 4]).astype(np.int64) node = onnx.helper.make_node( "Split", inputs=["input", "split"], outputs=["output_1", "output_2"] ) expected_outputs = [ np.array([1.0, 2.0]).astype(np.float32), np.array([3.0, 4.0, 5.0, 6.0]).astype(np.float32), ] expect( node, inputs=[node_input, split], outputs=expected_outputs, name="test_split_variable_parts_default_axis_opset18", ) @staticmethod def export_zero_size_splits_opset18() -> None: # 1-dimensional tensor with dimension_size=0 node_input = np.array([]).astype(np.float32) # Split emtpy tensor to tensors of size zero split = np.array([0, 0, 0]).astype(np.int64) node = onnx.helper.make_node( "Split", inputs=["input", "split"], outputs=["output_1", "output_2", "output_3"], ) expected_outputs = [ np.array([]).astype(np.float32), np.array([]).astype(np.float32), np.array([]).astype(np.float32), ] expect( node, inputs=[node_input, split], outputs=expected_outputs, name="test_split_zero_size_splits_opset18", ) @staticmethod def export_1d_uneven_split_opset18() -> None: node_input = np.array([1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0]).astype(np.float32) # If axis is not specified, split is applied on default axis 0 node = onnx.helper.make_node( "Split", inputs=["input"], outputs=["output_1", "output_2", "output_3", "output_4"], num_outputs=4, ) expected_outputs = [ np.array([1.0, 2.0]).astype(np.float32), np.array([3.0, 4.0]).astype(np.float32), np.array([5.0, 6.0]).astype(np.float32), np.array([7.0]).astype(np.float32), ] expect( node, inputs=[node_input], outputs=expected_outputs, name="test_split_1d_uneven_split_opset18", ) @staticmethod def export_2d_uneven_split_opset18() -> None: node_input = np.array( [ [1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0], [9.0, 10.0, 11.0, 12.0, 13.0, 14.0, 15.0, 16.0], ] ).astype(np.float32) node = onnx.helper.make_node( "Split", inputs=["input"], outputs=["output_1", "output_2", "output_3"], axis=1, num_outputs=3, ) expected_outputs = [ np.array([[1.0, 2.0, 3.0], [9.0, 10.0, 11.0]]).astype(np.float32), np.array([[4.0, 5.0, 6.0], [12.0, 13.0, 14.0]]).astype(np.float32), np.array([[7.0, 8.0], [15.0, 16.0]]).astype(np.float32), ] expect( node, inputs=[node_input], outputs=expected_outputs, name="test_split_2d_uneven_split_opset18", )
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59,164
onnx/onnx
refs/heads/main
/onnx/reference/custom_element_types.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np bfloat16 = np.dtype((np.uint16, {"bfloat16": (np.uint16, 0)})) float8e4m3fn = np.dtype((np.uint8, {"e4m3fn": (np.uint8, 0)})) float8e4m3fnuz = np.dtype((np.uint8, {"e4m3fnuz": (np.uint8, 0)})) float8e5m2 = np.dtype((np.uint8, {"e5m2": (np.uint8, 0)})) float8e5m2fnuz = np.dtype((np.uint8, {"e5m2fnuz": (np.uint8, 0)}))
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59,165
onnx/onnx
refs/heads/main
/onnx/test/hub_test.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=protected-access import glob import os import unittest from os.path import join import pytest from onnx import ModelProto, hub @pytest.mark.skipif( "TEST_HUB" not in os.environ or not os.environ["TEST_HUB"], reason="Conserving Git LFS quota", ) class TestModelHub(unittest.TestCase): def setUp(self) -> None: self.name = "MNIST" self.repo = "onnx/models:main" self.opset = 7 def test_force_reload(self) -> None: model = hub.load(self.name, self.repo, force_reload=True) self.assertIsInstance(model, ModelProto) cached_files = list( glob.glob(join(hub.get_dir(), "**", "*.onnx"), recursive=True) ) self.assertGreaterEqual(len(cached_files), 1) def test_listing_models(self) -> None: model_info_list_1 = hub.list_models(self.repo, model="mnist", tags=["vision"]) model_info_list_2 = hub.list_models(self.repo, tags=["vision"]) model_info_list_3 = hub.list_models(self.repo) self.assertGreater(len(model_info_list_1), 1) self.assertGreater(len(model_info_list_2), len(model_info_list_1)) self.assertGreater(len(model_info_list_3), len(model_info_list_2)) def test_basic_usage(self) -> None: model = hub.load(self.name, self.repo) self.assertIsInstance(model, ModelProto) cached_files = list( glob.glob(join(hub.get_dir(), "**", "*.onnx"), recursive=True) ) self.assertGreaterEqual(len(cached_files), 1) def test_custom_cache(self) -> None: old_cache = hub.get_dir() new_cache = join(old_cache, "custom") hub.set_dir(new_cache) model = hub.load(self.name, self.repo) self.assertIsInstance(model, ModelProto) cached_files = list(glob.glob(join(new_cache, "**", "*.onnx"), recursive=True)) self.assertGreaterEqual(len(cached_files), 1) hub.set_dir(old_cache) def test_download_with_opset(self) -> None: model = hub.load(self.name, self.repo, opset=8) self.assertIsInstance(model, ModelProto) def test_opset_error(self) -> None: self.assertRaises( AssertionError, lambda: hub.load(self.name, self.repo, opset=-1) ) def test_manifest_not_found(self) -> None: self.assertRaises( AssertionError, lambda: hub.load(self.name, "onnx/models:unknown", silent=True), ) def test_verify_repo_ref(self) -> None: # Not trusted repo: verified = hub._verify_repo_ref("mhamilton723/models") self.assertFalse(verified) # Not trusted repo: verified = hub._verify_repo_ref("onnx/models:unknown") self.assertFalse(verified) # Trusted repo: verified = hub._verify_repo_ref(self.repo) self.assertTrue(verified) def test_get_model_info(self) -> None: hub.get_model_info("mnist", self.repo, opset=8) hub.get_model_info("mnist", self.repo) self.assertRaises( AssertionError, lambda: hub.get_model_info("mnist", self.repo, opset=-1) ) def test_download_model_with_test_data(self) -> None: directory = hub.download_model_with_test_data("mnist") files = os.listdir(directory) self.assertIsInstance(directory, str) self.assertIn(member="model.onnx", container=files, msg="Onnx model not found") self.assertIn( member="test_data_set_0", container=files, msg="Test data not found" ) def test_model_with_preprocessing(self) -> None: model = hub.load_composite_model( "ResNet50-fp32", preprocessing_model="ResNet-preproc" ) self.assertIsInstance(model, ModelProto) if __name__ == "__main__": unittest.main()
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59,166
onnx/onnx
refs/heads/main
/onnx/backend/test/case/node/shrink.py
# Copyright (c) ONNX Project Contributors # # SPDX-License-Identifier: Apache-2.0 import numpy as np import onnx from onnx.backend.test.case.base import Base from onnx.backend.test.case.node import expect class Shrink(Base): @staticmethod def export_hard_shrink() -> None: node = onnx.helper.make_node( "Shrink", inputs=["x"], outputs=["y"], lambd=1.5, ) X = np.arange(-2.0, 2.1, dtype=np.float32) Y = np.array([-2, 0, 0, 0, 2], dtype=np.float32) expect(node, inputs=[X], outputs=[Y], name="test_shrink_hard") @staticmethod def export_soft_shrink() -> None: node = onnx.helper.make_node( "Shrink", inputs=["x"], outputs=["y"], lambd=1.5, bias=1.5, ) X = np.arange(-2.0, 2.1, dtype=np.float32) Y = np.array([-0.5, 0, 0, 0, 0.5], dtype=np.float32) expect(node, inputs=[X], outputs=[Y], name="test_shrink_soft")
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59,167
onnx/onnx
refs/heads/main
/onnx/reference/ops/op_gru.py
# Copyright (c) ONNX Project Contributors # SPDX-License-Identifier: Apache-2.0 # pylint: disable=R0913,R0914,W0221,W0613 import numpy as np from onnx.reference.op_run import OpRun class CommonGRU(OpRun): def __init__(self, onnx_node, run_params): # type: ignore OpRun.__init__(self, onnx_node, run_params) self.n_outputs = len(onnx_node.output) self.number_of_gates = 3 def f(self, x): # type: ignore return 1 / (1 + np.exp(-x)) def g(self, x): # type: ignore return np.tanh(x) def _step(self, X, R, B, W, H_0, num_directions): # type: ignore seq_length = X.shape[0] hidden_size = H_0.shape[-1] batch_size = X.shape[1] Y = np.empty([seq_length, num_directions, batch_size, hidden_size]) h_list = [] [w_z, w_r, w_h] = np.split(W, 3) [r_z, r_r, r_h] = np.split(R, 3) [w_bz, w_br, w_bh, r_bz, r_br, r_bh] = np.split(B, 6) gates_w = np.transpose(np.concatenate((w_z, w_r))) gates_r = np.transpose(np.concatenate((r_z, r_r))) gates_b = np.add(np.concatenate((w_bz, w_br)), np.concatenate((r_bz, r_br))) H_t = H_0 for x in np.split(X, X.shape[0], axis=0): gates = np.dot(x, gates_w) + np.dot(H_t, gates_r) + gates_b z, r = np.split(gates, 2, -1) # pylint: disable=W0632 z = self.f(z) r = self.f(r) h_default = self.g( np.dot(x, np.transpose(w_h)) + np.dot(r * H_t, np.transpose(r_h)) + w_bh + r_bh ) h_linear = self.g( np.dot(x, np.transpose(w_h)) + r * (np.dot(H_t, np.transpose(r_h)) + r_bh) + w_bh ) h = h_linear if self.linear_before_reset else h_default # type: ignore H = (1 - z) * h + z * H_t h_list.append(H) H_t = H concatenated = np.concatenate(h_list) if num_directions == 1: Y[:, 0, :, :] = concatenated if self.layout == 0: # type: ignore Y_h = Y[-1] else: Y = np.transpose(Y, [2, 0, 1, 3]) Y_h = Y[:, :, -1, :] return Y, Y_h def _run( # type: ignore self, X, W, R, B=None, sequence_lens=None, initial_h=None, activation_alpha=None, activation_beta=None, activations=None, clip=None, direction=None, hidden_size=None, layout=None, linear_before_reset=None, ): # TODO: support overridden attributes. num_directions = W.shape[0] if num_directions == 1: R = np.squeeze(R, axis=0) W = np.squeeze(W, axis=0) if B is not None: B = np.squeeze(B, axis=0) if sequence_lens is not None: sequence_lens = np.squeeze(sequence_lens, axis=0) if initial_h is not None: initial_h = np.squeeze(initial_h, axis=0) hidden_size = R.shape[-1] batch_size = X.shape[1] X = X if layout == 0 else np.swapaxes(X, 0, 1) b = ( B if B is not None else np.zeros(2 * self.number_of_gates * hidden_size, dtype=X.dtype) ) h_0 = ( initial_h if initial_h is not None else np.zeros((batch_size, hidden_size), dtype=X.dtype) ) B = b H_0 = h_0 else: raise NotImplementedError( f"Unsupported value {num_directions} for num_directions and operator " f"{self.__class__.__name__!r}." ) Y, Y_h = self._step(X, R, B, W, H_0, num_directions=num_directions) Y = Y.astype(X.dtype) return (Y,) if self.n_outputs == 1 else (Y, Y_h.astype(X.dtype)) class GRU(CommonGRU): def __init__(self, onnx_node, run_params): # type: ignore CommonGRU.__init__(self, onnx_node, run_params) # type: ignore
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59,171
neelparekh/ExcitingNBAGames
refs/heads/master
/test_polling.py
from format_utils import * def to_NBAAPI_format(d): game={ 'hTeam': { 'triCode': d['home_name'], 'score': d['home_score'], }, 'vTeam': { 'triCode': d['away_name'], 'score': d['away_score'], }, 'clock': d['clock'], 'period': { 'current': d['quarter'], }, 'isGameActivated': d['isGameActivated'] } return game def inject_no_games(): return [] def inject_no_exciting_games(): game0={ 'home_name': 'PHO', 'away_name': 'SAS', 'home_score': '', 'away_score': '', 'clock': '', 'quarter': '', 'isGameActivated': False, } game1={ 'home_name': 'MIN', 'away_name': 'MKE', 'home_score': 76, 'away_score': 45, 'clock': '8:44', 'quarter': '3', 'isGameActivated': True, } return [to_NBAAPI_format(game) for game in [game0, game1]] def inject_1_newly_exciting_1_unactivated_game(): game0={ 'home_name': 'LAC', 'away_name': 'DAL', 'home_score': 110, 'away_score': 112, 'clock': "04:20", 'quarter': 4, 'isGameActivated': True, } game1={ 'home_name': 'PHO', 'away_name': 'SAS', 'home_score': '', 'away_score': '', 'clock': '', 'quarter': '', 'isGameActivated': False, } return [to_NBAAPI_format(game) for game in [game0, game1]] def inject_2_unexciting_1_old_2_newly_exciting_games(): game0 = { 'home_name': 'BOS', 'away_name': 'TOR', 'home_score': 98, 'away_score': 100, 'clock': "06:22", # not in trigger range 'quarter': 4, 'isGameActivated': True, } game1 = { 'home_name': 'IND', 'away_name': 'MIA', 'home_score': 98, 'away_score': 100, 'clock': "04:22", 'quarter': 3, # not in trigger range 'isGameActivated': True, } game2={ # game already exists 'home_name': 'LAC', 'away_name': 'DAL', 'home_score': 113, 'away_score': 112, 'clock': "03:37", 'quarter': 4, 'isGameActivated': True, } game3={ 'home_name': 'LAL', 'away_name': 'POR', 'home_score': 100, 'away_score': 92, 'clock': "2.6", 'quarter': 4, 'isGameActivated': True, } game4 = { 'home_name': 'DEN', 'away_name': 'UTA', 'home_score': 98, 'away_score': 93, 'score_diff': 5, 'clock': "22.7", 'quarter': 4, 'isGameActivated': True, } return [to_NBAAPI_format(game) for game in [game0, game1, game2, game3, game4]]
{"/test_polling.py": ["/format_utils.py"], "/clock.py": ["/app.py"], "/twilio_connectors.py": ["/settings.py"], "/process_NBA_games.py": ["/format_utils.py", "/test_polling.py"], "/app.py": ["/settings.py", "/twilio_connectors.py", "/process_NBA_games.py"]}
59,172
neelparekh/ExcitingNBAGames
refs/heads/master
/clock.py
from apscheduler.schedulers.background import BackgroundScheduler from apscheduler.triggers.cron import CronTrigger from app import update_users import pytz scheduler = BackgroundScheduler() scheduler.add_job(update_users, CronTrigger.from_crontab('* 11-23 * * *'), timezone=pytz.timezone('US/Pacific')) # scheduler.add_job(refresh_games_db, 'interval', days=1, start_date='2020-09-10 00:00:00') scheduler.start()
{"/test_polling.py": ["/format_utils.py"], "/clock.py": ["/app.py"], "/twilio_connectors.py": ["/settings.py"], "/process_NBA_games.py": ["/format_utils.py", "/test_polling.py"], "/app.py": ["/settings.py", "/twilio_connectors.py", "/process_NBA_games.py"]}
59,173
neelparekh/ExcitingNBAGames
refs/heads/master
/twilio_connectors.py
# twilio imports from twilio.rest import Client from twilio.request_validator import RequestValidator # external dependencies from typing import Dict, Tuple, List from flask import abort, current_app, request from functools import wraps # custom packages import settings def send_SMS(data: Dict, phone_number: str): ''' Send data to phone number Parameters ---------- data: Dict phone_number: str must be E.164 format ''' try: # Your Account sid and Auth Token from twilio.com/console account_sid = settings.account_sid auth_token = settings.auth_token twilio_number = settings.twilio_number # Make a client and POST a message client = Client(account_sid, auth_token) message = client.messages \ .create( body=data['message_body'], from_=twilio_number, to=phone_number ) print(message.sid) return f"Success! SMS sent to {phone_number}" except Exception as e: print(e) return f"The SMS to {phone_number} did not send." def validate_twilio_request(f): """ Validates that incoming requests genuinely originated from Twilio. Stole this from Twilio tutorial. Example Usage: @app.route('/message', methods=['POST']) @validate_twilio_request def incoming_message(): resp = MessagingResponse() resp.message("Message was len {len(request.values['Body'])} characters.") return str(resp) """ @wraps(f) def decorated_function(*args, **kwargs): # Create an instance of the RequestValidator class validator = RequestValidator(settings.auth_token) # Validate the request using its URL, POST data, # and X-TWILIO-SIGNATURE header request_valid = validator.validate( request.url, request.form, request.headers.get('X-TWILIO-SIGNATURE', '')) # Continue processing the request if it's valid (or if DEBUG is True) # and return a 403 error if it's not if request_valid or current_app.debug: return f(*args, **kwargs) else: return abort(403) return decorated_function
{"/test_polling.py": ["/format_utils.py"], "/clock.py": ["/app.py"], "/twilio_connectors.py": ["/settings.py"], "/process_NBA_games.py": ["/format_utils.py", "/test_polling.py"], "/app.py": ["/settings.py", "/twilio_connectors.py", "/process_NBA_games.py"]}
59,174
neelparekh/ExcitingNBAGames
refs/heads/master
/process_NBA_games.py
import requests import datetime from format_utils import * from typing import List, Dict, Tuple from test_polling import * def request_NBA_scoreboard() -> List[Dict]: ''' Get all daily NBA game data. Returns ------- scoreboard: List[Dict] (json) ''' try: NBA_BASE='https://data.nba.net/10s/' r = requests.get(NBA_BASE + '/prod/v2/today.json') r.raise_for_status() todayScoreboard = r.json()['links']['todayScoreboard'] s = requests.get(NBA_BASE + todayScoreboard) s.raise_for_status() scoreboard = s.json() return scoreboard except requests.exceptions.HTTPError as err: raise SystemExit(err) def get_currently_exciting_games(triggers) -> List[Dict]: ''' Get specific information for games that are currently exciting Parameters ---------- triggers: Dict Returns ------- exciting_games: List[Dict] games that are found to be exciting based on the triggers provided ''' ##### TESTS ##### scoreboard = request_NBA_scoreboard() games = scoreboard['games'] # games = inject_no_games() # games = inject_no_exciting_games() # games = inject_1_newly_exciting_1_unactivated_game() # games = inject_2_unexciting_1_old_2_newly_exciting_games() ################# exciting_games=[] for game in games: # Make sure this game has started if not game['isGameActivated']: continue # Parse game info home = game['hTeam'] away = game['vTeam'] home_name = home['triCode'] away_name = away['triCode'] home_score = format_score(home['score']) away_score = format_score(away['score']) score_diff = abs(home_score-away_score) clock = format_datetime(game['clock']) quarter = game['period']['current'] # If it's an interesting game, return the game info triggers_time = format_datetime(triggers['time']) score_time_ratio = score_diff / (1+int(clock.strftime('%M'))) # score diff to mins remaining if (score_diff <= triggers['score_diff'] and clock <= triggers_time and quarter >= triggers['quarter'] and score_time_ratio <= triggers['score_time_ratio']): exciting_games.append({ 'home_name': home_name, 'away_name': away_name, 'home_score': home_score, 'away_score': away_score, 'score_diff': score_diff, 'clock': format_clock(game['clock']), 'quarter': quarter, }) return exciting_games def games_to_text(games: List[Dict]) -> str: ''' convert list of game dicts to human-readable text to be sent via SMS Parameters ---------- games: List[Dict] Returns ------- text: str ''' text = '' for game in games: text += " \n" +\ f"{game['home_name']} {game['home_score']} - {game['away_name']} {game['away_score']} " +\ f"{format_quarter(game['quarter'])}Q {game['clock']}" return text
{"/test_polling.py": ["/format_utils.py"], "/clock.py": ["/app.py"], "/twilio_connectors.py": ["/settings.py"], "/process_NBA_games.py": ["/format_utils.py", "/test_polling.py"], "/app.py": ["/settings.py", "/twilio_connectors.py", "/process_NBA_games.py"]}
59,175
neelparekh/ExcitingNBAGames
refs/heads/master
/format_utils.py
import datetime from typing import List, Dict, Tuple def format_clock(t) -> str: if t == '': # e.g. halftime or end of quarter/game t = '00:00' if len(t.split(':')) == 1: # e.g. 2.6 seconds remaining t = f"00:{int(t.split('.')[0]):02}" return t def format_datetime(t) -> datetime.datetime: if t == '': # e.g. halftime or end of quarter/game t = '00:00' if len(t.split(':')) == 1: # e.g. 2.6 seconds remaining t = f"00:{int(t.split('.')[0]):02}" return datetime.datetime.strptime(t, '%M:%S').time() def format_quarter(q) -> str: if q > 4: return str(q%4) + 'OT' else: return str(q) def format_score(s) -> str: if s == '': return o else: return int(s)
{"/test_polling.py": ["/format_utils.py"], "/clock.py": ["/app.py"], "/twilio_connectors.py": ["/settings.py"], "/process_NBA_games.py": ["/format_utils.py", "/test_polling.py"], "/app.py": ["/settings.py", "/twilio_connectors.py", "/process_NBA_games.py"]}
59,176
neelparekh/ExcitingNBAGames
refs/heads/master
/settings.py
from dotenv import load_dotenv import os load_dotenv() account_sid = os.getenv("TWILIO_ACCOUNT_SID") auth_token = os.getenv("TWILIO_AUTH_TOKEN") service_sid = os.getenv("TWILIO_SERVICE_ID") twilio_number = os.getenv("TWILIO_PHONE_NUMBER") ENDPOINT = os.getenv("DB_ENDPOINT") PORT = os.getenv("DB_PORT") DBNAME = os.getenv("DB_NAME") REGION = os.getenv("AWS_REGION") USER = os.getenv("DB_USER") PW = os.getenv("DB_PW") TIMEOUT_VALUE = 15
{"/test_polling.py": ["/format_utils.py"], "/clock.py": ["/app.py"], "/twilio_connectors.py": ["/settings.py"], "/process_NBA_games.py": ["/format_utils.py", "/test_polling.py"], "/app.py": ["/settings.py", "/twilio_connectors.py", "/process_NBA_games.py"]}
59,177
neelparekh/ExcitingNBAGames
refs/heads/master
/app.py
# flask imports from flask import Flask, render_template, request, make_response, jsonify, redirect, Blueprint, url_for, flash, abort from flask_bootstrap import Bootstrap from flask_login import UserMixin, LoginManager, login_user, logout_user, login_required, current_user # external dependencies import os import re from random import randint from datetime import datetime import mysql.connector from mysql.connector import Error from twilio.twiml.messaging_response import MessagingResponse from apscheduler.schedulers.background import BackgroundScheduler from apscheduler.triggers.cron import CronTrigger import pytz from dotenv import load_dotenv from typing import List, Dict, Tuple # custom packages import settings from twilio_connectors import send_SMS, validate_twilio_request from process_NBA_games import get_currently_exciting_games, games_to_text # Basic config for Flask site app = Flask(__name__, static_folder="templates/static") bootstrap = Bootstrap(app) login_manager = LoginManager(app) login_manager.login_view = 'auth.login' app.config['SECRET_KEY'] = b'z=\x19\xd5\xc2\xf0\x137\xc0\n\xdc\x9a*}\xd2\xd2' TIMEOUT_VALUE = settings.TIMEOUT_VALUE # blueprint for auth routes in our app auth = Blueprint('auth', __name__) # login route @auth.route('/login') def login(): return render_template('login.html',pageClass="login") # login POST (entered credentials to login) @auth.route('/login', methods=['POST']) def login_post(): email = request.form.get('email') print(email) password = request.form.get('password') return redirect(url_for('home')) # logout route @auth.route('/logout') def logout(): logout_user() return redirect(url_for('home')) # register blueprint app.register_blueprint(auth) @login_manager.user_loader def load_user(user_id): # since the user_id is just the primary key of our user table, use it in the query for the user return # home page @app.route('/') def home(): return render_template('home.html') # signup route @app.route('/signup') def signup(): return render_template('signup.html') @app.route("/validate_phone", methods=["POST"]) def validatePhone(): inputPhone = str(request.form['phone']) valid = re.match("^\(?([0-9]{3})\)?[-.●]?([0-9]{3})[-.●]?([0-9]{4})$", inputPhone) inputPhone = '+1' + re.sub(r'\D', '', inputPhone) # keep digits only code = randint(10000,99999) if not valid: flash('The phone number you entered was invalid. Please try again', 'error') return redirect(url_for('home',_anchor='getstarted')) try: conn = mysql.connector.connect(host=settings.ENDPOINT, database=settings.DBNAME, user=settings.USER, password=settings.PW, connection_timeout=settings.TIMEOUT_VALUE) cur = conn.cursor() cur.execute(f"SELECT isVerified FROM {settings.DBNAME}.users WHERE phone={inputPhone}") results = cur.fetchall() if results and results[0][0] == 1: cur.close() conn.close() raise Exception else: cur.execute(f"DELETE FROM {settings.DBNAME}.users WHERE phone={inputPhone}") conn.commit() cur.execute(f"INSERT INTO {settings.DBNAME}.users (phone, verifyCode, verifyCodeTimeStamp, isVerified, wantsNotifications) VALUES ({inputPhone}, {code}, '{datetime.now()}', {0}, {1})") conn.commit() cur.close() conn.close() except: flash('The phone number you entered is already in our system', 'info') return redirect(url_for('home',_anchor='getstarted')) try: data = {'message_body': f"Your sportsalerts.io verification code is: {str(code)}"} send_SMS(data=data, phone_number=inputPhone) flash('A text message containing a 5 digit code has been sent to your number', 'info') flash('Verify', 'verify') return redirect(url_for('home',_anchor='getstarted')) except: conn = mysql.connector.connect(host=ENDPOINT, database=DBNAME, user=USER, password=PW, connection_timeout=TIMEOUT_VALUE) cur = conn.cursor() cur.execute(f"DELETE FROM {settings.DBNAME}.users WHERE phone={inputPhone}") conn.commit() cur.close() conn.close() flash('We were unable to send a text message to the number you provided', 'error') return redirect(url_for('home',_anchor='getstarted')) @app.route("/verify_phone", methods=["POST"]) def verifyPhone(): verificationCode = request.form['verifyCode'] if int(verificationCode) < 10000 or int(verificationCode) > 99999: flash('Please enter a 5 digit code', 'error') return redirect(url_for('home',_anchor='getstarted')) try: conn = mysql.connector.connect(host=settings.ENDPOINT, database=settings.DBNAME, user=settings.USER, password=settings.PW, connection_timeout=TIMEOUT_VALUE) cur = conn.cursor() cur = conn.cursor() cur.execute(f"SELECT * FROM {settings.DBNAME}.users WHERE verifyCode={verificationCode}") results = cur.fetchall() if results: if (datetime.now()-results[0][3]).seconds < 120: cur.execute(f"UPDATE {settings.DBNAME}.users SET wantsNotifications=1, isVerified=1 WHERE verifyCode={verificationCode}") conn.commit() cur.close() conn.close() # send a welcome text upon successful verification. phone_number = results[0][1] print(f"Welcome {phone_number}!") welcome_message = "Welcome to sportsalerts.io! You will now receive messages as soon as a game becomes exciting. You may unsubscribe by replying 'STOP'. Msg&Data rates may apply." data = {'message_body': welcome_message} send_SMS(data, phone_number) # flash confirmation flash('Verification Complete! You will now receive notifications for all close games', 'success') return redirect(url_for('home',_anchor='getstarted')) else: cur.execute(f"DELETE FROM {settings.DBNAME}.users WHERE verifyCode={verificationCode}") conn.commit() cur.close() conn.close() flash('You must enter the code within 2 minutes. Please refresh & try again', 'error') return redirect(url_for('home',_anchor='getstarted')) else: flash('The code you entered was incorrect. Please try again', 'error') flash('Verify', 'verify') return redirect(url_for('home',_anchor='getstarted')) except: flash('We were unable to verify your number. Please refresh the page and try again', 'error') return redirect(url_for('home',_anchor='getstarted')) @app.route("/receive_sms", methods=["POST"]) @validate_twilio_request def process_incoming_SMS(): message_body = request.values.get('Body', None) phone_number = request.values.get('From', None) message_body = re.sub(r'[\W_]+', '', message_body).lower() # remove all punctuation phone_number = re.sub(r'\D', '', phone_number).lower() # remove all punctuation print(f"Message from {phone_number}: {message_body}") resp = MessagingResponse() try: # get the latest verification and subscription status of the requesting phone number. conn = mysql.connector.connect(host=settings.ENDPOINT, database=settings.DBNAME, user=settings.USER, password=settings.PW, connection_timeout=settings.TIMEOUT_VALUE) cur = conn.cursor() cur.execute(f"SELECT isVerified, wantsNotifications from {settings.DBNAME}.users WHERE phone={phone_number} ORDER BY verifyCodeTimeStamp DESC LIMIT 1") response = cur.fetchall() is_verified = response[0][0] wants_notifications = response[0][1] # now rocess the request if len(response) > 0: # This phone number exists in our system. if message_body in ['unsubscribe','stop']: if is_verified and wants_notifications: # valid unsubscription request try: cur.execute(f"UPDATE {settings.DBNAME}.users SET wantsNotifications=0 WHERE phone={phone_number}") conn.commit() cur.close() conn.close() resp.message("You have been successfully unsubscribed. You may resubscribe by texting 'START'.") except: resp.message("Please try unsubscribing again in a few minutes.") else: # ignore this unsubscription request! resp.message("") elif message_body in ['start','resubscribe']: if is_verified and not wants_notifications: # valid re-subscription request try: conn = mysql.connector.connect(host=settings.ENDPOINT, database=settings.DBNAME, user=settings.USER, password=settings.PW, connection_timeout=settings.TIMEOUT_VALUE) cur = conn.cursor() cur.execute(f"UPDATE {settings.DBNAME}.users SET wantsNotifications=1 WHERE phone={phone_number}") conn.commit() cur.close() conn.close() resp.message("Welcome back! You may not receive notifications for games that have already begun today.") except: resp.message("Please try re-subscribing again in a few minutes.") else: # ignore this resubscription request! resp.message("") else: # ignore this request! resp.message("") else: # This phone number does not exist in our system. Ignore this request!! resp.message("") except: # probably a larger issue and we should take care of it raise return str(resp) def newly_exciting_games(cur, conn, games: List[Dict]): ''' Find users who want to be sent SMS about newly exciting games and send them an SMS with game information. Paramters --------- cur: sqlite3.Cursor cursor object from the connection to our databse conn: mysql.connector connection to our database exc_games: List[Dict] list of game info dicts ''' try: # get all user verified consenting phone numbers cur.execute(f"SELECT phone FROM {settings.DBNAME}.users WHERE isVerified=1 AND wantsNotifications=1") results = cur.fetchall() if results: # make sure we have users before trying anything! user_numbers = [row[0] for row in results] # convert all game data into single text message data = {'message_body': games_to_text(games)} # send an individual text to each phone number for phone_number in user_numbers: send_SMS(data, phone_number) # update the db with newly sent games query_game_data = ", ".join(f"(CURRENT_TIMESTAMP(), '{game['home_name']}', '{game['away_name']}', '{game['clock']}', {game['score_diff']}, 1)" for game in games) query_str = f"INSERT INTO {settings.DBNAME}.game_data (game_date, home, away, clock_remaining, score_diff, sent_sms) VALUES " + query_game_data cur.execute(query_str) conn.commit() print(f"\tSuccess! Wrote {len(games)} new games to game_data") else: print(f"There were {len(games)} exciting games, but no verified active users.") except: raise def update_users(): ''' This polling function checks for new games and determines if they are exciting. It then updates participating users and a database table game_data with all newly exciting games. ''' print(f'Checked for newly exciting games: {datetime.now()}') triggers = { 'score_diff': 8, # int 'time': '4:00', # str (e.g. '05:00' is 5 mins remaining) 'quarter': 4, # int (note that 5 is OT, 6 is 2OT) 'score_time_ratio': 2, } cegs = get_currently_exciting_games(triggers) if cegs: # if there are currently exciting games try: conn = mysql.connector.connect(host=settings.ENDPOINT, database=settings.DBNAME, user=settings.USER, password=settings.PW, connection_timeout=settings.TIMEOUT_VALUE) cur = conn.cursor() # get previously processed games from today's date cur.execute(f"SELECT * FROM {settings.DBNAME}.game_data WHERE sent_sms=1 AND date_format(game_date, '%Y-%m-%d')=CURRENT_DATE()") sent_games = cur.fetchall() if sent_games: # check if we have already sent an SMS for any of our currently exciting games and exclude those. sent_home_names = [row[2] for row in sent_games] newly_cegs = [ceg for ceg in cegs if ceg['home_name'] not in sent_home_names] # if any remain, try sending a text with all newly exciting games if len(newly_cegs)>0: newly_exciting_games(cur, conn, newly_cegs) else: print("\tNo newly exciting games.") else: # send a text for all currently exciting games # using this might be an issue if the write to db for game_data fails even after successfully sending the message newly_exciting_games(cur, conn, cegs) # close our connection to db cur.close() conn.close() except: # Probably a db connection error raise else: print("\tNo games are currently exciting. :(") if __name__ == "__main__": scheduler = BackgroundScheduler(timezone=pytz.timezone('US/Pacific')) scheduler.add_job(update_users, CronTrigger.from_crontab('* * * * *'), timezone=pytz.timezone('US/Pacific')) # scheduler.add_job(refresh_games_db, 'interval', days=1, start_date='2020-09-10 00:00:00') scheduler.start() app.run()
{"/test_polling.py": ["/format_utils.py"], "/clock.py": ["/app.py"], "/twilio_connectors.py": ["/settings.py"], "/process_NBA_games.py": ["/format_utils.py", "/test_polling.py"], "/app.py": ["/settings.py", "/twilio_connectors.py", "/process_NBA_games.py"]}
59,186
enborra/turing-camera-timelapse
refs/heads/master
/app/core/__init__.py
from .core_service import CoreService
{"/app/core/__init__.py": ["/app/core/core_service.py"]}
59,187
enborra/turing-camera-timelapse
refs/heads/master
/docs/giftest.py
# Requires imageio - pip install imageio # Requires numpy - pip install numpy import os import imageio # photo_dir = './frames/' summary_year = 2018 summary_month = 6 # summary_day = 2 # summary_hour = 24 summary_day = 3 summary_hour = 2 photo_dir = '/var/lib/turing/turing-camera-timelapse/photos/%s/%s/%s/%s' % (summary_year, summary_month, summary_day, summary_hour) movies_dir = '/var/lib/turing/turing-camera-timelapse/movies' export_filetype = 'mp4' images = [] for subdir, dirs, files in os.walk(photo_dir): for file in sorted(files): file_path = os.path.join(subdir, file) if file_path.endswith('.jpg'): if not file_path.endswith('.DS_Store'): images.append(imageio.imread(file_path)) print('loaded an image: %s' % file_path) try: imageio.mimsave(os.path.join(movies_dir, '%s-%s-%s-%s.mp4' % (summary_year, summary_month, summary_day, summary_hour)), images, format=export_filetype) except Exception,e: print('Error: %s' % e)
{"/app/core/__init__.py": ["/app/core/core_service.py"]}
59,188
enborra/turing-camera-timelapse
refs/heads/master
/docs/timetest.py
from datetime import datetime import calendar import time while True: now = datetime.utcnow() unixtime = calendar.timegm(now.utctimetuple()) minstamp = unixtime - (now.second) print('Current timestamp: %s' % unixtime) print('Current timestamp on the minute: %s' % minstamp) print('---') time.sleep(1)
{"/app/core/__init__.py": ["/app/core/core_service.py"]}
59,189
enborra/turing-camera-timelapse
refs/heads/master
/app/core/core_service.py
import base64 import calendar from io import StringIO from datetime import datetime, timedelta import errno import io import json import os import signal import threading import time import imageio from PIL import Image import paho.mqtt.client as mqtt # try: # from picamera import PiCamera # except Exception: # pass class CoreService(object): _kill_now = False _comm_client = None _comm_delay = 0 _thread_comms = None _thread_lock = None # _camera = None _op_timer = 0 _system_channel = '/system' _data_channel = '/camera/frames' _dir_app_data = '/var/lib/turing/turing-camera-timelapse' _subdir_photos = 'photos' _subdir_movies = 'movies' def __init__(self): signal.signal(signal.SIGINT, self.exit_gracefully) signal.signal(signal.SIGTERM, self.exit_gracefully) def start(self): start_success = True try: self._ensure_directory_structure() self._comm_client = mqtt.Client( client_id="service_camera_timelapse", clean_session=True ) self._comm_client.on_message = self._on_message self._comm_client.on_connect = self._on_connect self._comm_client.on_publish = self._on_publish self._comm_client.on_subscribe = self._on_subscribe self._thread_lock = threading.RLock() self._thread_comms = threading.Thread(target=self._start_thread_comms) self._thread_comms.setDaemon(True) self._thread_comms.start() except Exception as e: start_success = False if start_success: while True: if self._op_timer >= 60: self._ensure_summary_movies() self._op_timer = 0 else: self._op_timer += 1 time.sleep(0.1) if self._kill_now: break else: print('[CAMERA-TIMELAPSE] Startup routine failed. Shutting down.') pass def _on_connect(self, client, userdata, flags, rc): self._comm_client.subscribe(self._data_channel) self.output('{"sender": "service_camera_timelapse", "message": "Connected to GrandCentral."}') def _on_message(self, client, userdata, msg): msg_struct = None if msg.topic == self._data_channel: self._ensure_directory_structure() now = datetime.utcnow() unixtime = calendar.timegm(now.utctimetuple()) ts = unixtime - (now.second) directory_prepped = False try: current_year = str(now.year) path_photos_year = os.path.join(self._dir_app_data, self._subdir_photos, current_year) self._ensure_directory_existence(path_photos_year) current_month = str(now.month) path_photos_month = os.path.join(self._dir_app_data, self._subdir_photos, current_year, current_month) self._ensure_directory_existence(path_photos_month) current_day = str(now.day) path_photos_day = os.path.join(self._dir_app_data, self._subdir_photos, current_year, current_month, current_day) self._ensure_directory_existence(path_photos_day) current_hour = str(now.hour+1) path_photos_hour = os.path.join(self._dir_app_data, self._subdir_photos, current_year, current_month, current_day, current_hour) self._ensure_directory_existence(path_photos_hour) directory_prepped = True except Exception as e: print('[CAMERA.TIMELAPSE] Could not prepare directory to store current photo in. Cannot store photo recieved at %s' % ts ) if directory_prepped: try: image_base64 = msg.payload # ts = time.time() # filename = '%s.png' % str(ts) filename = os.path.join(path_photos_hour, '%s.jpg'%str(ts)) if not os.path.exists(filename): fh = open(filename, 'wb') fh.write(base64.b64decode(image_base64)) except Exception as e: print('[CAMERA-TIMELAPSE] problem receiving message: %s' % e) def _on_publish(self, mosq, obj, mid): pass def _on_subscribe(self, mosq, obj, mid, granted_qos): self.output('{"sender": "service_camera_timelapse", "message": "Successfully subscribed to GrandCentral /system channel."}') def _on_log(self, mosq, obj, level, string): pass def _connect_to_comms(self): print('Connecting to comms system..') try: self._comm_client.connect( 'localhost', # '10.0.1.34', 1883, 60 ) except Exception as e: print('Could not connect to local GranCentral. Retry in one second.') time.sleep(1) self._connect_to_comms() def _start_thread_comms(self): print('Comms thread started.') self._thread_lock.acquire() try: self._connect_to_comms() finally: self._thread_lock.release() print('Connected to comms server.') while True: self._thread_lock.acquire() try: if self._comm_delay > 2000: self._comm_client.loop() self._comm_delay = 0 else: self._comm_delay += 1 finally: self._thread_lock.release() def _ensure_directory_structure(self): self._ensure_directory_existence(self._dir_app_data) path_photos = os.path.join(self._dir_app_data, self._subdir_photos) self._ensure_directory_existence(path_photos) path_movies = os.path.join(self._dir_app_data, self._subdir_movies) self._ensure_directory_existence(path_movies) def _ensure_directory_existence(self, dir_path): if not os.path.exists(dir_path): try: os.makedirs(dir_path) except OSError as e: if e.errno != errno.EEXIST: raise def _ensure_summary_movies(self): now = datetime.utcnow() prior_hour = now - timedelta(hours=1) summary_year = prior_hour.year summary_month = prior_hour.month summary_day = prior_hour.day # Increment hour by one since our file storage is 1-indexed summary_hour = prior_hour.hour + 1 self._compile_summary_movie(summary_year, summary_month, summary_day, summary_hour) def _compile_summary_movie(self, summary_year, summary_month, summary_day, summary_hour): # photo_dir = './frames/' # summary_year = 2018 # summary_month = 6 # summary_day = 2 # summary_hour = 24 # summary_day = 3 # summary_hour = 2 photo_dir = '/var/lib/turing/turing-camera-timelapse/photos/%s/%s/%s/%s' % (summary_year, summary_month, summary_day, summary_hour) movies_dir = '/var/lib/turing/turing-camera-timelapse/movies' export_filetype = 'mp4' movie_path = os.path.join(movies_dir, '%s-%s-%s-%s.mp4' % (summary_year, summary_month, summary_day, summary_hour)) if not os.path.exists(movie_path): images = [] success_collecting_images = False try: for subdir, dirs, files in os.walk(photo_dir): for file in sorted(files): file_path = os.path.join(subdir, file) if file_path.endswith('.jpg'): if not file_path.endswith('.DS_Store'): images.append(imageio.imread(file_path)) success_collecting_images = True except Exception as e: print('[CAMERA.TIMELAPSE] Had an issue compiling images for a summary video. ERROR: %s' % e.message) if success_collecting_images: if len(images) > 0: try: imageio.mimsave(movie_path, images, format=export_filetype) except Exception as e: print('[CAMERA.TIMELAPSE] Error compiling summary video: %s' % e) # STANDARD SERVICE OPERATION METHODS def output(self, msg, channel=_system_channel): if self._comm_client: self._comm_client.publish(channel, msg) def stop(self): pass def exit_gracefully(self,signum, frame): self._kill_now = True
{"/app/core/__init__.py": ["/app/core/core_service.py"]}
59,190
enborra/turing-camera-timelapse
refs/heads/master
/app/boot.py
import sys from core import CoreService c = CoreService() try: print("[CAMERA-TIMELAPSE] Booting.") c.start() except KeyboardInterrupt: print("[CAMERA-TIMELAPSE] Shutting down.") c.stop() try: sys.stdout.close() except: pass try: sys.stderr.close() except: pass except Exception as e: print( "Error: %s" % str(e) ) c.stop()
{"/app/core/__init__.py": ["/app/core/core_service.py"]}
59,199
Sandy4321/uncertain-trees-experiments
refs/heads/master
/plot_mer_ris.py
""" Used to create combined MER/RIS figures, where we plot the MER on the x axis, and the RIS on the y axis, with each dataset/experiment being a single point. """ import argparse import itertools from pathlib import Path import pandas as pd import matplotlib import matplotlib.pyplot as plt plt.style.use('seaborn-whitegrid') rcParams = matplotlib.rcParams def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--input", required=True) parser.add_argument("--expected-mer", type=float, default=0.1) return parser.parse_args() def main(): args = parse_args() large_text = 16 small_text = 14 fig_width = 9 fig_height = 6 params = { 'axes.labelsize': large_text, 'font.size': small_text, 'legend.fontsize': small_text, 'xtick.labelsize': small_text, 'ytick.labelsize': small_text, 'text.usetex': True, 'figure.figsize': [fig_width, fig_height] } rcParams.update(params) prefix = Path(args.input) mer_path = prefix / "mean_error_rate.means.csv" ris_path = prefix / "relative_interval_size.means.csv" mers = pd.read_csv(mer_path) mer = mers.set_index("Dataset").iloc[:-3] ris = pd.read_csv(ris_path).set_index("Dataset").iloc[:-3] def scatter_points(x_points, y_points, marker): xy_df = pd.DataFrame([x_points, y_points]) plt.scatter(xy_df.iloc[0], xy_df.iloc[1], marker=marker) markers = itertools.cycle(('o', '^', 's', 'x', '*', 'D', 'J')) # TODO: Support any method available in csv read in for method in ["MondrianForest", "OnlineQRF", "CPApproximate", "CPExact"]: scatter_points(mer[method], ris[method], marker=next(markers)) # Can use util or ris on the y axis plt.legend() plt.xlabel("MER") plt.ylabel("RIS") plt.ylim(ymax=1.05, ymin=-0.05) plt.axvline(x=args.expected_mer, linestyle='dashed', color='grey') plt.savefig(prefix / "combined-mer-ris.pdf", bbox_inches='tight') if __name__ == '__main__': main()
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,200
Sandy4321/uncertain-trees-experiments
refs/heads/master
/confidence_utility_calculation.py
import argparse from collections import OrderedDict from pathlib import Path import pandas as pd import numpy as np from tabulate import tabulate def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--input", required=True, help="A dir containing output from interval_metrics.py") parser.add_argument("--output", default="", help="The folder to create the output in") parser.add_argument("--overwrite", action="store_true", default=False, help="When given, will not check if the output folder already exists ," "potentially overwriting its contents.") return parser.parse_args() if __name__ == "__main__": args = parse_args() inpath = Path(args.input) outpath = Path(args.output if args.output != "" else args.input) / "adjusted_utility" # Read in the error and ris csv's error_rate_means = pd.read_csv(inpath / "error_rate.means.csv")\ .set_index("Dataset").iloc[:-3, :] # Drop aggregate stats rows ris = pd.read_csv(inpath / "relative_interval_size.means.csv")\ .set_index("Dataset").iloc[:-3, :] # Extract the percentages from the column titles and subtract the expected confidence from 1 to get significance cols = error_rate_means.columns.tolist() significances = [1 - float(col) for col in cols] # For each column in the error df, use the respective significance and ris to calculate the adj utility util_dict = OrderedDict() # (Some) code duplication from interval_metrics.py def dropoff(util, err, expected_mer, func): if err > expected_mer: return max(func(util, err, expected_mer), 0) else: return max(util, 0) # Vectorize the function tuf = np.vectorize(dropoff) # Linear dropoff, utility is zero when MER is twice bigger than expected def linear(util, error, expected_mer): return max(util, 0) * max((2 - (error / expected_mer)), 0) for column, significance in zip(error_rate_means, significances): ris_col = ris[column] error_col = error_rate_means[column] util_col = 1 - ris_col weight_col = np.maximum((2 - (error_col / significance)), 0) util_dict[column] = tuf(util_col, error_col, significance, linear) def add_stats(df): df.loc['Mean'] = df.mean() df.loc['Median'] = df.median() df.loc['Std'] = df.std() return df util_df = add_stats(pd.DataFrame(util_dict, index=ris.index, columns=cols)) util_df.to_csv(outpath.with_suffix(".csv")) def create_table_str(df): float_format = ".2f" return tabulate(df, headers='keys', tablefmt='latex_booktabs', floatfmt=float_format) util_table_str = create_table_str(util_df) outpath.with_suffix(".tex").write_text(util_table_str)
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,201
Sandy4321/uncertain-trees-experiments
refs/heads/master
/generate_figures.py
""" Creates figures for a specific metric from a directory containing subdirs of result csv files. Will aggregate all the results for every dataset, and plot its mean value along with its std across experiments. Will also create a collection of latex tables and corresponding csv output. Used to plot the output from the skgarden_experiments and moa_experiments scripts. """ import argparse from collections import defaultdict, OrderedDict from pathlib import Path import itertools import logging import json import matplotlib.pyplot as plt import pandas as pd from pylab import * from tabulate import tabulate from natsort import natsorted plt.style.use('seaborn-whitegrid') rcParams = matplotlib.rcParams METHOD_RENAMES = {"OoBConformalApproximate": "CPApproximate", "OoBConformalRegressor": "CPExact", "MondrianForest": "MondrianForest", "PredictiveVarianceRF": "PredictiveVarianceRF", "OnlineQRF": "OnlineQRF"} def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--input", required= True, help="A dir containing sub-dirs of results, one per method." "The sub-dirs contain csv files with output, one per dataset, per" "experiment repeat." "Sub-directory names will be used as method names in the output.") parser.add_argument("--output", required= True, help="The folder to create the output in") parser.add_argument("--overwrite", action="store_true", default=False, help="When given, will not check if the output folder already exists ," "potentially overwriting its contents.") parser.add_argument("--ris-figures", action="store_true", default=False, help="When given, will create window RIS instead of MIS figures." "Requires that prediction files are present!") parser.add_argument("--dont-create-tables", action="store_true", default=False, help="When given, will not create table files") parser.add_argument("--dont-create-figures", action="store_true", default=False, help="When given, will not generate figures.") parser.add_argument("--use-tex", action="store_true", default=False, help="When given, will use the Tex engine to create text for the figures (slower)") parser.add_argument("--expected-error", default=0.1, help="The expected error level (significance) for the experiment. " "Used to draw the expected error horizontal line and calculate " "the MER deviation.") parser.add_argument("--mark-every", default=1, type=int, help="Place a marker on the figures every this many data points.") parser.add_argument("--fig-height", type=int, default=6) parser.add_argument("--fig-width", type=int, default=6) alg_selection = parser.add_mutually_exclusive_group() alg_selection.add_argument("--include-only", nargs='+', help="Include only the provided input directories") alg_selection.add_argument("--exclude", nargs='+', help="Exclude the provided input directories") return parser.parse_args() def gather_method_results(res_path: Path): """ Reads csv files into lists of pandas dfs. :param res_path: Path A Path object to the location of the result csv's. The expected filenames are formatted as dataset_name_X.csv, where X is the experiment repeat number. :return: A dict from dataset name to a list of result dataframes """ res = defaultdict(list) for res_file in res_path.glob("*.csv"): if res_file.match("*.time.csv") or res_file.match("*.pred.csv"): # Avoid parsing time/pred files continue base_name = res_file.name[:-6] # _X.csv is 6 characters df = pd.read_csv(res_file) res[base_name].append(df) return res def gather_metric(results_dict, metric): """ Returns a dict from dataset name to a df containing the aggregated measurements for the requested metric. :param results_dict: {dataset_name: list_of_result_dataframes} The list has one dataframe per experiment, with all the metrics. It corresponds to the output of gather_method_results(). :param metric: String, name of metric (common across dataframes) :return: dict {dataset_name: dataframe_of_metric} The df has one line per experiment, each column is the measurement for one window. """ dataset_to_metric = {} for ds_name, df_list in results_dict.items(): # TODO: Probably faster to do the projection before the concat metric_df = pd.concat(df_list, axis=1).loc[:, [metric]].T dataset_to_metric[ds_name] = metric_df return dataset_to_metric def plot_metric(method_metric_dict, dataset_name, x_axis, metric_name, markevery, normalization=None): """Returns an error-bar plot of the aggregated statistics (mean, var) for a specific dataset and metric, for each method in the provided dict. :param method_metric_dict: {method: {ds_name: measurements_df}} Maps each method to dataset names, each one with one aggregate measurements df. The df has one line per experiment, each column is the measurement for one window. :param dataset_name: The specific dataset name we want to plot. :param x_axis: The x axis values tha correspond to the y measurements. :param metric_name: The name of the metric we are plotting :param markevery: int Place a marker every this many points on the lines. :param normalization: A number that we use to normalize the measurements by. This is used to produce relative interval sizes instead of absolute. :return: A matplotlib Axes object, containing the plotted figure (no legends) """ fig = plt.figure() ax = fig.add_subplot(111) ax.set_xlabel('Instance') ax.set_ylabel(metric_name.title()) marker = itertools.cycle(('o', '^', 's', 'x', '*', 'D', 'J')) # Get the method name, and its measurements for all datasets for method, ds_metric_dict in method_metric_dict.items(): # Get the measurements for the requested data, and calc their stats metric_df = ds_metric_dict[dataset_name] if normalization: metric_df = metric_df / normalization mu = metric_df.mean() std_dev = metric_df.std() # Plot the line for the method and dataset ax.plot(x_axis, mu, label=method, marker=next(marker), markevery=markevery) ax.fill_between(x_axis, mu - std_dev, mu + std_dev, alpha=.25, linewidth=0) return ax def sort_nicely(l): """ Sort the given list of Path objects in the way that humans expect. """ return sorted(l, key=lambda x: int(x.name) if x.name.isdigit() else x.name) def create_tables(method_metric_dict, outpath, expected_error): """Creates a Latex booktabs table for a specific dataset and metric, for each method in the provided dict as well as a csv representation, and writes them both to disk. The metrics are aggregated over windows, and their mean and stddev are written to disk. :param method_metric_dict: {method: {ds_name: measurements_df}} Maps each method to dataset names, each one with one aggregate measurements df. The df has one line per experiment, each column is the measurement for one window. :param outpath: Path A Path object to the output tex file we will create. :param expected_error: float The expected error rate """ mean_method_to_measurements = OrderedDict() std_method_to_measurements = OrderedDict() median_method_to_measurements = OrderedDict() mean_deviation_method_to_measurements = OrderedDict() all_names = [] for method, ds_metric_dict in method_metric_dict.items(): ds_names = [] ds_means = [] ds_medians = [] ds_stds = [] ds_deviation_means = [] # Get the measurements for the requested data, and calc their stats for dataset_name, metric_df in natsorted(ds_metric_dict.items()): window_mean = metric_df.mean() window_std = metric_df.std() mean_window_deviation = abs(window_mean - expected_error).mean() # TODO: One DF per dataset, with all methods together, will need to work around iteration order ds_outpath = outpath / dataset_name ds_outpath.mkdir(exist_ok=True, parents=True) window_mean.to_csv(ds_outpath.joinpath("{}_window_means.csv".format(method))) window_std.to_csv(ds_outpath.joinpath("{}_window_std.csv".format(method))) overall_mean = window_mean.mean() overall_median = window_mean.median() overall_std = window_std.mean() ds_names.append(dataset_name) ds_means.append(overall_mean) ds_medians.append(overall_median) ds_stds.append(overall_std) ds_deviation_means.append(mean_window_deviation) all_names.append(ds_names) mean_method_to_measurements[method] = ds_means median_method_to_measurements[method] = ds_medians std_method_to_measurements[method] = ds_stds mean_deviation_method_to_measurements[method] = ds_deviation_means # if outpath.name == "mean_error_rate": # ds_outpath.joinpath("{}_mean_window_deviation.csv".format(method)).write_text( # "method,mean_window_deviation\n{},{}\n".format(method, mean_window_deviation)) # Assert datasets are in correct order between methods prev_names = [] for ds_names in all_names: if len(prev_names) == 0: prev_names = ds_names continue for left_name, right_name in zip(prev_names, ds_names): assert left_name == right_name, \ "DS order mismatch: {}, {}".format(left_name, right_name) def create_df(method_to_measurements_dict): dictionary = OrderedDict() dictionary["Dataset"] = ds_names dictionary.update(method_to_measurements_dict) df = pd.DataFrame(dictionary) df = df.set_index("Dataset") df.loc['Mean'] = df.mean() df.loc['Median'] = df.median() df.loc['Std'] = df.std() return df order = ["MondrianForest", "OnlineQRF", "CPApproximate", "CPExact"] mean_aggregate_metric_df = create_df(mean_method_to_measurements)[order] std_aggregate_metric_df = create_df(std_method_to_measurements)[order] median_aggregate_metric_df = create_df(median_method_to_measurements)[order] mean_aggregate_metric_df.to_csv(outpath.with_suffix(".means.csv")) std_aggregate_metric_df.to_csv(outpath.with_suffix(".stds.csv")) median_aggregate_metric_df.to_csv(outpath.with_suffix(".medians.csv")) def create_table_str(df): float_format = ".3f" if outpath.name == "mean_error_rate" else ".2f" return tabulate(df, headers='keys', tablefmt='latex_booktabs', floatfmt=float_format) table_str = create_table_str(mean_aggregate_metric_df) std_table_str = create_table_str(std_aggregate_metric_df) median_table_str = create_table_str(median_aggregate_metric_df) outpath.with_suffix(".means.tex").write_text(table_str) outpath.with_suffix(".stds.tex").write_text(std_table_str) outpath.with_suffix(".medians.tex").write_text(median_table_str) if outpath.name == "mean_error_rate": mean_deviation_df = create_df(mean_deviation_method_to_measurements) mean_deviation_df.to_csv(outpath.with_suffix(".deviations.csv")) mean_deviation_table_str = create_table_str(mean_deviation_df) outpath.with_suffix(".deviations.tex").write_text(mean_deviation_table_str) def main(): args = parse_args() # l=16/s=14 for airlines plots large_text = 16 small_text = 14 params = { 'axes.labelsize': large_text, 'font.size': small_text, 'legend.fontsize': small_text, 'xtick.labelsize': small_text, 'ytick.labelsize': small_text, 'text.usetex': args.use_tex, 'figure.figsize': [args.fig_width, args.fig_height] } rcParams.update(params) input_path = Path(args.input).absolute() output_path = Path(args.output).absolute() # TODO: Allow custom order # fig_order = # args.table_order if args.table_order is not None else ["MondrianForest", "OnlineQRF", "CPApproximate", "CPExact"] assert output_path.parent != input_path, "Setting output path under input can cause issues, choose another path." output_path.mkdir(parents=True, exist_ok=args.overwrite) # Get all the directories under the input path method_dirs = [subpath for subpath in input_path.iterdir() if subpath.is_dir()] if args.exclude is not None: method_dirs = [subpath for subpath in method_dirs if subpath.name not in args.exclude] elif args.include_only is not None: method_dirs = [subpath for subpath in method_dirs if subpath.name in args.include_only] # Gather the results for each method # Format: {method: {ds_name: measurement_df_list}} method_to_dsname_to_result_df_list = OrderedDict() sorted_dirs = sort_nicely(method_dirs) for method_dir in sorted_dirs: method_to_dsname_to_result_df_list[method_dir.name] = gather_method_results(method_dir) json_file = output_path / "generate-figures-settings.json" json_file.write_text(json.dumps({"plot_params": params, "args": vars(args)})) for metric in ["mean error rate", "mean interval size"]: # Aggregate the list of result df to a single df per dataset, per method. # Format: {method: {ds_name: measurements_df}} # Each line in measurements_df is one experiment method_ds_metric = OrderedDict() for method, ds_to_measurements in method_to_dsname_to_result_df_list.items(): # TODO: Make it possible to iterate over metrics? method_ds_metric[method] = gather_metric(ds_to_measurements, metric) # TODO: Check if same number of experiments exists for each method # Will try to rearrange columns in this order: # [MondrianForest, OnlineQRF, CPApproximate, CPExact]. # This is the order used in the paper. # TODO: Take table order from arguments, have a sensible default with exception handling # order = sorted(method_ds_metric.keys()) original_dict = method_ds_metric try: if "SGDQR" in method_ds_metric: order = ["SGDQR", "MondrianForest", "OnlineQRF", "CPApproximate", "CPExact"] else: order = ["MondrianForest", "OnlineQRF", "CPApproximate", "CPExact"] if args.exclude is not None: for excluded_method in args.exclude: order.remove(excluded_method) method_ds_metric = OrderedDict((k, method_ds_metric[k]) for k in order) except KeyError: method_ds_metric = original_dict # method_ds_metric = OrderedDict((k, method_ds_metric[k]) for k in order) # Gather the names of datasets ds_names = set() for method, ds_name_to_measure in method_ds_metric.items(): ds_names.update(ds_name_to_measure.keys()) # All methods should have same x_axis, so just choose one sample_method = list(method_to_dsname_to_result_df_list.keys())[0] if not args.dont_create_tables: table_outpath = Path(args.output) / metric.replace(' ', '_') create_tables(method_ds_metric, table_outpath, args.expected_error) # Create and save one figure per dataset for dataset in ds_names: if args.dont_create_figures: break # From one of the methods, for this dataset, first experiment, get the index, as ints try: # If this doesn't work, we don't have MOA generated experiments x_axis = method_to_dsname_to_result_df_list[sample_method][dataset][0]["learning evaluation instances"].astype(int) except KeyError: # In which case we should have only Python-generated experiments, which should have an index column x_axis = method_to_dsname_to_result_df_list[sample_method][dataset][0]["index"].astype(int) # If we asked for RIS instead of MIS, we need to get the true values, which are in the .pred.csv files if metric == "mean interval size" and args.ris_figures: # We just need the true value range, so the first pred file will do, they're all the same anyway pred_file = method_dirs[0].joinpath(dataset + "_0.pred.csv") try: preds = pd.read_csv(pred_file) except FileNotFoundError: raise FileNotFoundError("Could not find prediction file {}.\n" "You can create these by running interval_metrics.py!".format(pred_file)) value_range = preds["true_value"].max() - preds["true_value"].min() plot_metric(method_ds_metric, dataset, x_axis, "Relative Interval Size", args.mark_every, value_range) else: ax = plot_metric(method_ds_metric, dataset, x_axis, metric, args.mark_every) if metric == "mean error rate": ax.axhline(y=args.expected_error, linestyle='dashed', color='grey') plt.legend() filename = metric if metric == "mean interval size" and args.ris_figures: filename = "relative interval size" outpath = Path(args.output) / (dataset + "-" + filename.replace(' ', '_') + ".pdf") plt.savefig(str(outpath), bbox_inches='tight') if __name__ == "__main__": main()
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,202
Sandy4321/uncertain-trees-experiments
refs/heads/master
/moa_experiments.py
""" Runs a number of experiments using MOA meta-learners. The user provides an input which contains a number of arff files for regression, and a MOA EvaluatePrequentialRegression(IntervalRegressionPerformanceEvaluator) task is run on each one. The output is one csv file per dataset, per experiment repeat. Usage: python moa_experiments.py --moajar /path/to/moa.jar --input /path/to/data --meta OnlineQRF """ import argparse import json from collections import defaultdict from pathlib import Path from subprocess import run from joblib import Parallel, delayed from parameter_sweep import run_print def main(): parser = argparse.ArgumentParser(description="Runs MOA experiments and stores results into files") parser.add_argument("--moajar", help="Path to MOA jar", required=True) parser.add_argument("--input", help="A directory containing one or more arff data files", required=True) parser.add_argument("--meta", help="The meta algorithm to use for training", required=True, choices=["OnlineQRF", "CPApproximate", "PredictiveVarianceRF", "CPExact", "SGDQR"]) parser.add_argument("--repeats", help="Number of times to repeat each experiment", type=int, default=1) parser.add_argument("--window", help="Performance report window size", type=int, default=1000) parser.add_argument("--njobs", type=int, default=1, help="Number of experiment jobs to run in parallel, max one per input file") parser.add_argument("--learner-threads", help="Number of threads to use for the learner", type=int, default=1) parser.add_argument("--output", help="The directory to place the output files. If not given, creates " "directory under input, using the meta learner name.") parser.add_argument("--ensemble-size", help="The size of the ensemble", type=int, default=10) parser.add_argument("--max-calibration-instances", type=int, default=1000, help="The max size of the calibration set.") parser.add_argument("--num-bins", type=int, default=100, help="Number of bins to use for each leaf histogram.") parser.add_argument("--confidence", help="The confidence level of the predictions", type=float, default=0.9) parser.add_argument("--stdout", default=False, action="store_true", help="When given, output results to stdout only instead of file") parser.add_argument("--overwrite", default=False, action="store_true", help="When given, it will not check if the output folder exists already.") parser.add_argument("--dont-save-predictions", default=False, action="store_true", help="When given, will not create file with predictions.") parser.add_argument("--dont-measure-model-size", default=False, action="store_true", help="When given, will not report the size of the model in the results.") parser.add_argument("--verbose", type=int, default=0, help="Set to 1 output per experiment, 2 to write MOA output to stdout.") args = parser.parse_args() # Tailor the command to each framework task = "EvaluatePrequentialRegression -e (IntervalRegressionPerformanceEvaluator -w {})".format(args.window) moa_jar_path = Path(args.moajar) moa_dir = moa_jar_path.parent command_prefix = "java -Xmx62g -cp \"{moa_jar}:{moa_dir}/dependency-jars/*\" ".format(moa_dir=moa_dir, moa_jar=moa_jar_path) if not args.dont_measure_model_size: command_prefix += "-javaagent:{}/dependency-jars/sizeofag-1.0.0.jar ".format(moa_dir) # Set up input and output dirs data_path = Path(args.input).absolute() if args.meta == "OnlineQRF": base_learner = "(trees.FIMTQR -e)" else: base_learner = "(trees.FIMTDD -e)" # If the user did not provide an output dir, put results under the data folder if args.output is None and not args.stdout: output_path = (data_path / args.meta).absolute() print("Will try to create directory {} to store the results".format(output_path)) else: output_path = Path(args.output).absolute() # Create the output dir if needed output_path.mkdir(parents=True, exist_ok=args.overwrite) # Run experiments for each data file commands = [] commands_per_file = defaultdict(list) arff_files = data_path.glob("*.arff") if len(list(arff_files)) == 0: # Note: this exhausts the iterator, need a new one raise FileNotFoundError("No arff files found in {} !".format(data_path)) for arff_file in data_path.glob("*.arff"): if args.meta != "SGDQR": learner = "meta.{meta} -l {base} -s {size} -a {confidence} -j {threads}".format( meta=args.meta, base=base_learner, size=args.ensemble_size, confidence=args.confidence, threads=args.learner_threads) else: learner = "meta.{meta} -a {confidence}".format( meta=args.meta, confidence=args.confidence) if args.meta not in ["OnlineQRF", "SGDQR"]: # Then it's a CP method learner += " -i {cal_size} ".format(cal_size=args.max_calibration_instances) elif args.meta == "OnlineQRF": learner += " -b {}".format(args.num_bins) for i in range(args.repeats): command = command_prefix + "moa.DoTask \" {task} -l ({learner}) " \ "-s (ArffFileStream -f {arff_file}) " \ "-f {window}".format(task=task, learner=learner, arff_file=data_path / arff_file, window=args.window) if not args.stdout: command += " -d {}".format(output_path / (arff_file.stem + "_{}.csv".format(i))) if not args.dont_save_predictions: command += " -o {}".format(output_path / (arff_file.stem + "_{}.pred".format(i))) command += "\"" # Quotes necessary because of parentheses commands_per_file[arff_file].append(command) commands.append(command) # print("Executing command: {}".format(command)) # Parallelize over files, ensuring that there's only one process at any time reading the # same file. Otherwise parallel performance is crap. If not enough files, compensate with # learner_threads > 1 # TODO: This is horrible job separation, long-running jobs are holding back the rest # at each repeat iteration. Figure out different way. with Parallel(n_jobs=args.njobs, verbose=args.verbose) as parallel: for i in range(args.repeats): print("Running repeat {}/{}".format(i+1, args.repeats)) parallel(delayed(run_print)(commands[i]) for arff_file, commands in commands_per_file.items()) # Write the settings for the experiment json_file = output_path / "settings.json" settings = vars(args) json_file.write_text(json.dumps(settings)) print("\nResults files created under {}".format(output_path)) if __name__ == '__main__': main()
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,203
Sandy4321/uncertain-trees-experiments
refs/heads/master
/computational_measures.py
""" Used to create the computational measures for a single method. We create a csv/tex file with the total runtime and final model size for every dataset for the method, and provide aggregate metrics. """ import argparse from pathlib import Path import json import pandas as pd from tabulate import tabulate def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--input", required= True, help="A dir containing csvs of results, one per repeat.") parser.add_argument("--output", required=True, help="The folder to create the output in, the last part of the input" " (method name) will be appended.") parser.add_argument("--overwrite", action="store_true", help="When given, will not check if the output folder already exists ," "potentially overwriting its contents.") return parser.parse_args() def main(): args = parse_args() input_path = Path(args.input) # Append the method name to the output as a subdir output_path = Path(args.output).joinpath(input_path.name) assert len(list(input_path.glob("*.csv"))) > 0, "No experiment files found under {}".format(input_path) assert output_path.parent != input_path, "Setting output path under input can cause issues, choose another path." output_path.mkdir(parents=True, exist_ok=args.overwrite) computational_metrics = ['evaluation time (cpu seconds)', 'model serialized size (bytes)'] json_file = output_path / "computational-measures-settings.json" json_file.write_text(json.dumps(vars(args))) # This df will have one row for each experiment combined_df = pd.DataFrame(columns=computational_metrics) experiment_values = {} # TODO: Support for multiple method directories, creation of comparison tables experiment_index = 0 # We iterate through each output file, get its last line and extract the computational metrics for experiment_file in input_path.glob("*.csv"): # Ignore other output files if experiment_file.match("*.pred.csv") or experiment_file.match("*.time.csv"): continue # Get the experiment name, i.e. dataset and repeat number experiment_value = experiment_file.stem # We maintain a dict from experiment index to name, we use this as the combined_df index later experiment_values[experiment_index] = experiment_value df = pd.read_csv(experiment_file) # Get the last line of the results dataframe, we want the final measurements of the requested metrics df = df.iloc[[-1]] metrics_df = df[computational_metrics] # Append the measurements to the combined dataframe combined_df = combined_df.append(metrics_df, ignore_index=True) experiment_index += 1 combined_df = combined_df.rename(experiment_values, axis='index').sort_index(ascending=True) # Calculate aggregate metrics def include_aggregates(df): df.loc['Mean'] = df.mean() df.loc['Median'] = df.median() df.loc['Std'] = df.std() return df combined_df = include_aggregates(combined_df) def create_table_str(df): # float_format = [".2f", ".4f", ".2f"] # if outpath.name == "mean_error_rate" else ".2f" return tabulate(df, headers='keys', tablefmt='latex_booktabs') # Create csv and tex output combined_df.to_csv(output_path / "computational_metrics.csv") table_str = create_table_str(combined_df) table_file = output_path / "computational_metrics.tex" table_file.write_text(table_str) if __name__ == '__main__': main()
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,204
Sandy4321/uncertain-trees-experiments
refs/heads/master
/evaluation_functions.py
import sys import pickle from collections import defaultdict from time import perf_counter import numpy as np from tqdm import trange from scipy.stats import norm # TODO: Since these break the "y_pred is a column vector convention", is there # any point in using them as sklearn metrics? # Maybe it's better to break away from sklearn API def mean_interval_size(y_true, y_interval): """ Calculates the mean interval size from a interval prediction array. :param y_true: Not used, here for compatibility with scorer :param y_interval: A n x 2 Numpy array. First column is lower interval, second is upper :return: The average size of the intervals """ # y_true is not used, but we keep it to maintain function signature as scorers expect it interval_size = y_interval[:, 1] - y_interval[:, 0] # Guaranteed to be > 0 return np.average(interval_size) def mean_error_rate(y_true, y_interval): """ Calculates the mean error rate in the provided intervals :param y_true: A numpy column array of true values :param y_interval: A n x 2 Numpy array. First column is lower interval, second is upper :return: The ratio of values in y_true that are within their corresponding interval in y_interval """ wrong_intervals = ((y_true < y_interval[:, 0]) | (y_true > y_interval[:, 1])).sum() return wrong_intervals / y_true.shape[0] def prequential_interval_evaluation(estimator, X, y, confidence, scoring, window_size=1000, verbose=0, additional_output=None): """ Prequential evaluation of an estimator by testing then training with each example in sequence. If a window size is set the average of a tumbling window is reported. :param estimator: Has to support a partial_fit function :param X: numpy array Feature data :param y: numpy column vector Labels :param confidence: float The desired confidence level for the predictions, (0, 1.0). :param scoring: callable or dict If a callable, it should take y_true and y_predicted_interval (Numpy arrays) as arguments and return a scalar metric. dicts should have a mapping metric_name : callable (as above). can be used to report multiple metrics. :param window_size: int The size of the tumbling window, we average the metric(s) every x data points :param verbose: int If > 0 will display experiment progress bar. If > 1 will also print statistics per window. :param additional_output: None or Pathlib object. When provided, will write additional information about the run to files. These include the prediction and interval estimates, timings, and serialized model size. :return: List or dict If scoring is a callable, will return a list of scores, size should be ceil(n_samples / window_size) If scoring is a dict, will return a dict {metric_name: list of scores}, list size should be ceil(n_samples / window_size) """ n_samples = X.shape[0] if isinstance(scoring, dict): # Scores are dicts {metric_name: list of scalar scores} window_scores = defaultdict(list) test_scores = defaultdict(list) else: # Scores are lists of scalar scores window_scores = [] test_scores = [] window_elements = 0 window_count = 0 total_windows = int(np.ceil(n_samples / window_size)) window_start = perf_counter() def predict_interval(estimator_, data, confidence_): """ Returns a an interval prediction from an estimator that provides the std of a normal distribution around the prediction. :param estimator: An estimator that provides a .predict(X, return_std=True) function, and returns the mean and std of a normal distribution. :param data: A numpy array of features :param confidence_: The desired confidence level, i.e. 1 - desired_error. :return: A prediction interval as a numpy array of floats. """ assert np.isscalar(confidence_), "Confidence should be a scalar" if hasattr(estimator_, 'vw_predict_interval'): # Duck typing for the function, defined for VW but not for MF interval_tuple = estimator.vw_predict_interval(data) else: ensemble_mean, std = estimator_.predict(data, return_std=True) std += 1e-6 # Avoid NaNs. TODO: Better solution? How are std=0 produced?? interval_tuple = norm.interval(confidence_, loc=ensemble_mean, scale=std) return np.concatenate((interval_tuple[0][:, np.newaxis], interval_tuple[1][:, np.newaxis]), axis=1) total_duration = 0 pred_file = None if additional_output is not None: pred_file = additional_output.open('w') for i in trange(n_samples, disable=(not verbose)): if i == 0: # sklearn does not allow prediction on an untrained model estimator.partial_fit(X[i, np.newaxis], y[i, np.newaxis]) y_interval = predict_interval(estimator, X[i, np.newaxis], confidence) y_true = y[i, np.newaxis] if pred_file is not None: pred_file.write("{}, {}\n".format(y_interval.flatten(), y_true)) if isinstance(scoring, dict): for score_name, score_func in scoring.items(): window_scores[score_name].append(score_func(y_true, y_interval)) else: window_scores.append(scoring(y_true, y_interval)) if i == 0: continue window_elements += 1 # Easier than checking inside window_scores # We add a final result every time we have gather window_size values, # or we've reached the end of the data (regardless of number of points in window) if window_elements == window_size or i == n_samples - 1: window_count += 1 if isinstance(scoring, dict): assert isinstance(window_scores, dict) for score_name, score_list in window_scores.items(): window_sum = np.sum(score_list) test_scores[score_name].append(window_sum / len(score_list)) if verbose > 1: print("Window {}/{}: {}: {}".format( window_count, total_windows, score_name, window_sum / len(score_list))) else: window_sum = np.sum(window_scores) # Divide by current window size here, window is possibly incomplete test_scores.append(window_sum / len(window_scores)) if verbose > 1: print("Window {}/{}: {}".format( window_count, total_windows, window_sum / len(test_scores))) window_scores.clear() window_elements = 0 window_end = perf_counter() window_duration = window_end - window_start total_duration += window_duration if additional_output is not None: test_scores["window_time"].append(window_duration) test_scores["evaluation time (cpu seconds)"].append(total_duration) model_size = sys.getsizeof(pickle.dumps(estimator)) test_scores["model serialized size (bytes)"].append(model_size) if verbose > 1: print("Time to process window: {} sec".format(window_duration)) print("Model size: {} bytes, {} MiB".format(model_size, model_size/1024**2)) window_start = perf_counter() estimator.partial_fit(X[i, np.newaxis], y[i, np.newaxis]) return test_scores
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,205
Sandy4321/uncertain-trees-experiments
refs/heads/master
/parameter_sweep.py
#!/usr/bin/env python """ Simple python script to sweep over one or two parameters for our experiments. """ import argparse from subprocess import run from pathlib import Path import numpy as np from joblib import Parallel, delayed def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--command", required=True, help="The base command to run, this does not change across sweeps") parser.add_argument("--sweep-argument", required=True, help="The argument to sweep on, e.g. \"meta\"") parser.add_argument("--output-prefix", required=True, help="The prefix for the output argument") group = parser.add_mutually_exclusive_group(required=True) group.add_argument("--argument-list", nargs='+', help="A space-separated list of arguments to use, e.g. \"OnlineQRF CPExact\"") group.add_argument("--argument-range", nargs=3, help="A string representation of an argument range, enter" "\"start end step\" as in np.arange(start, end, step).") parser.add_argument("--njobs", type=int, default=1, help="Number of experiment jobs to run in parallel, max one per input file") parser.add_argument("--verbose", type=int, default=0, help="Set to 1 output per experiment, 2 to write MOA output to stdout.") parser.add_argument("--inner-sweep-argument", help="The argument to sweep on") group = parser.add_mutually_exclusive_group() group.add_argument("--inner-argument-list", nargs='+', help="A list of arguments to run") group.add_argument("--inner-argument-range", nargs=3, help="A string representation of an argument range, enter " "\"start end step\" as in np.arange(start, end, step)") return parser.parse_args() def run_print(cur_command, order=""): print("Running command:\n{}".format(cur_command)) if order != "": print("Task index: {}".format(order)) run(cur_command, shell=True) def main(): args = parse_args() def parse_sweep(argument_list, argument_range): if argument_list is not None: sweep = argument_list else: # We use this trick to correctly parse ints or float from string, so # that the meta-args end up with the correct type from ast import literal_eval as le range_args = [le(x) for x in argument_range] start, end, step = range_args sweep = np.arange(start, end, step) return sweep outer_sweep = parse_sweep(args.argument_list, args.argument_range) inner_sweep = None if args.inner_argument_list is not None or args.inner_argument_range is not None: inner_sweep = parse_sweep(args.inner_argument_list, args.inner_argument_range) command_list = [] for outer_value in outer_sweep: outer_value = str(outer_value) outdir = Path(args.output_prefix) / outer_value if inner_sweep is not None: for inner_value in inner_sweep: inner_value = str(inner_value) inner_ouput = outdir / inner_value command = args.command + " --{outer_arg} {outer_val} --{inner_arg} {inner_val} --output {outdir} ".format( outer_arg=args.sweep_argument, outer_val=outer_value, outdir=inner_ouput, inner_arg=args.inner_sweep_argument, inner_val=inner_value) command_list.append(command) else: command = args.command + " --{arg} {val} --output {outdir} ".format( arg=args.sweep_argument, val=outer_value, outdir=outdir) command_list.append(command) # joblib does not support nested parallelism if args.njobs > 1 and "njobs" in args.command: print("WARNING: joblib does not support nested parallelism, setting sweep njobs to 1!") args.njobs = 1 with Parallel(n_jobs=args.njobs, verbose=args.verbose) as parallel: num_tasks = len(command_list) parallel(delayed(run_print)(command, "{}/{}".format(i+1, num_tasks)) for i, command in enumerate(command_list)) if __name__ == "__main__": main()
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,206
Sandy4321/uncertain-trees-experiments
refs/heads/master
/adjusted_utility.py
import argparse from pathlib import Path import json import logging import numpy as np import pandas as pd from tabulate import tabulate def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--input", required=True, help="Input directory, should contain utility.csv file" "created using interval_metrics.py") parser.add_argument("--expected-mer", type=float, default=0.1) parser.add_argument("--table-order", nargs='+') alg_selection = parser.add_mutually_exclusive_group() alg_selection.add_argument("--include-only", nargs='+', help="Include only the provided output directories") alg_selection.add_argument("--exclude", nargs='+', help="Exclude the provided output directories") return parser.parse_args() def main(): args = parse_args() input_path = Path(args.input) utilities = pd.read_csv(input_path / "utility.csv", index_col=0) # Read in mean error rates, exclude final 3 lines that are aggregate statistics error_rates = pd.read_csv(input_path / "error_rate.means.csv", index_col=0).iloc[:-3, ] if args.exclude is not None: try: utilities = utilities.drop(args.exclude, axis=1) error_rates = error_rates.drop(args.exclude, axis=1) except ValueError as e: logging.warning("Could not drop requested columns, error was \"{}\"".format(e)) elif args.include_only is not None: try: utilities = utilities[args.include_only] error_rates = error_rates[args.include_only] except KeyError as e: logging.warning("Could not include requested columns, error was \"{}\"".format(e)) # We set the half life to be at an error rate of 1.5 times the requested one # That means that the utility of a method will be half if the method has 1.5 times the requested error rate half_life_deviation = 0.5 * args.expected_mer decay_lambda = np.log(2) / half_life_deviation # If the error rate is not smaller/equal to expected, multiply utility by decay rate determined by error deviation adjusted_utilities = utilities.where(error_rates <= args.expected_mer, np.multiply(utilities, np.exp(-decay_lambda * (error_rates - args.expected_mer)))) try: adjusted_utilities = adjusted_utilities[args.table_order] except KeyError: logging.warning("Could not set column order to {}, available columns were {}".format( args.table_order, adjusted_utilities.columns.values)) pass # Write json file with arguments to keep track of how output was generated json_file = input_path/ "adjusted_utility_settings.json" settings = vars(args) json_file.write_text(json.dumps(settings)) def add_stats(df: pd.DataFrame) -> pd.DataFrame: df.loc['Mean'] = df.mean() df.loc['Median'] = df.median() df.loc['Std'] = df.std() return df adjusted_utilities = add_stats(adjusted_utilities) def create_table_str(df): float_format = ".2f" return tabulate(df, headers='keys', tablefmt='latex_booktabs', floatfmt=float_format) adj_util_path = input_path / "exp_adjusted_utility" adjusted_utilities.to_csv(adj_util_path.with_suffix(".csv")) ajd_util_table_str = create_table_str(adjusted_utilities) adj_util_path.with_suffix(".tex").write_text(ajd_util_table_str) if __name__ == '__main__': main()
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,207
Sandy4321/uncertain-trees-experiments
refs/heads/master
/generate_violin_plots.py
""" Script to create violin plots for quantile loss and utility measurements """ import argparse from pathlib import Path import seaborn as sns import pandas as pd from pylab import rcParams large_text = 16 small_text = 14 params = { 'axes.labelsize': large_text, 'font.size': small_text, 'legend.fontsize': small_text, 'xtick.labelsize': small_text, 'ytick.labelsize': small_text, 'text.usetex': True, 'figure.figsize': [9, 6] } rcParams.update(params) def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--input", required=True, help="Input directory, should contain quantile_loss.means.csv" "or adjusted_utility.csv file.") parser.add_argument("--metric", required=True, help="Metric to plot.", choices=['quantile_loss', "utility"]) return parser.parse_args() if __name__ == "__main__": args = parse_args() # Load results CSV filename = "quantile_loss.means.csv" if args.metric == "quantile_loss" else "exp_adjusted_utility.csv" input_path = Path(args.input) df = pd.read_csv(input_path / filename)[:-3].set_index("Dataset") # Ensure method order matches rest of paper try: # Some old experiments used MF for MondrianForest df.rename(index=str, columns={"MF": "MondrianForest"}, inplace=True) except KeyError: pass df = df[["MondrianForest", "OnlineQRF", "CPApproximate", "CPExact"]] # Melt data and add plots y_label = "Quantile Loss" if args.metric == "quantile_loss" else "Utility" melted_df = pd.melt(df, value_vars=["MondrianForest", "OnlineQRF", "CPApproximate", "CPExact"], value_name=y_label, var_name="Method") ax = sns.violinplot(x="Method", y=y_label, data=melted_df, cut=0, inner=None, bw=0.4, scale="width") ax = sns.swarmplot(x="Method", y=y_label, data=melted_df, edgecolor="grey", color="black") ax.set_ylabel(y_label) ax.grid(axis='y', color="0.9", linestyle='-', linewidth=1) # Remove vertical grid lines ax.grid(axis='x', color="1.0", linestyle='-', linewidth=1) ax.set_axisbelow(True) ax.get_figure().savefig(str(input_path / (args.metric + "-violin.pdf")), bbox_inches='tight')
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,208
Sandy4321/uncertain-trees-experiments
refs/heads/master
/generate_boxplots.py
""" Script to create boxplots for quantile loss and utility measurements """ import argparse from pathlib import Path import numpy as np import matplotlib.pyplot as plt from matplotlib.patches import Polygon import pandas as pd from pylab import rcParams plt.style.use('seaborn-whitegrid') large_text = 16 small_text = 14 params = { 'axes.labelsize': large_text, 'font.size': small_text, 'legend.fontsize': small_text, 'xtick.labelsize': small_text, 'ytick.labelsize': small_text, 'text.usetex': True, 'figure.figsize': [9, 6] } rcParams.update(params) def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--input", required=True, help="Input directory, should contain quantile_loss.means.csv" "or adjusted_utility.csv file.") parser.add_argument("--metric", required=True, help="Metric to plot.", choices=['quantile_loss', "utility"]) return parser.parse_args() if __name__ == "__main__": args = parse_args() # Load results CSV filename = "quantile_loss.means.csv" if args.metric == "quantile_loss" else "exp_adjusted_utility.csv" input_path = Path(args.input) df = pd.read_csv(input_path / filename)[:-3].set_index("Dataset") fig, ax = plt.subplots(nrows=1, ncols=1, figsize=(9, 6)) # Ensure method order matches rest of paper try: df.rename(index=str, columns={"MF": "MondrianForest"}, inplace=True) except KeyError: pass df = df[["MondrianForest", "OnlineQRF", "CPApproximate", "CPExact"]] # Get color palette colors = plt.rcParams['axes.prop_cycle'].by_key()['color'] bp = ax.boxplot(df.transpose(), labels=df.columns) # Color boxes, from https://github.com/jbmouret/matplotlib_for_papers#colored-boxes for i in range(0, len(bp['boxes'])): bp['boxes'][i].set_color(colors[i]) # we have two whiskers! bp['whiskers'][i*2].set_color(colors[i]) bp['whiskers'][i*2 + 1].set_color(colors[i]) bp['whiskers'][i*2].set_linewidth(2) bp['whiskers'][i*2 + 1].set_linewidth(2) # top and bottom fliers # (set allows us to set many parameters at once) bp['fliers'][i].set(markerfacecolor=colors[i], marker='o', alpha=0.75, markersize=6, markeredgecolor='none') bp['medians'][i].set_color('black') bp['medians'][i].set_linewidth(2) # and 4 caps to remove for c in bp['caps']: c.set_linewidth(0) # Fil boxes with color for i in range(0, len(bp['boxes'])): box = bp['boxes'][i] box.set_linewidth(0) boxX = [] boxY = [] for j in range(5): boxX.append(box.get_xdata()[j]) boxY.append(box.get_ydata()[j]) boxCoords = np.array([boxX, boxY]).transpose() boxPolygon = Polygon(boxCoords, facecolor=colors[i], linewidth=0) ax.add_patch(boxPolygon) y_label = "Quantile Loss" if args.metric == "quantile_loss" else "Utility" ax.set_ylabel(y_label) ax.grid(axis='y', color="0.9", linestyle='-', linewidth=1) # Remove vertical grid lines ax.grid(axis='x', color="1.0", linestyle='-', linewidth=1) ax.set_axisbelow(True) plt.savefig(str(input_path / (args.metric + ".pdf")), bbox_inches='tight')
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,209
Sandy4321/uncertain-trees-experiments
refs/heads/master
/skgarden_experiments.py
""" Runs a number of experiments using skgarden MondrianForest. The user provides a datadir which contains a number of arff files for regression, and a prequential regression task is run on each one. The output is one csv file per dataset, per experiment repeat. Will also output two additional files per experiment: <name>.time.csv <name>.pred These contain timing measurements and each individual prediction. Usage: python skgarden_experiments.py --input path/to/data """ import argparse from pathlib import Path import json from collections import namedtuple import arff import numpy as np from skgarden import MondrianForestRegressor import pandas as pd from vowpalwabbit.sklearn_vw import VWRegressor from evaluation_functions import mean_error_rate, mean_interval_size, prequential_interval_evaluation from joblib import Parallel, delayed class VWIntervalRegressor(object): def __init__(self, confidence): half_significance = (1.0 - confidence) / 2.0 self.lower = VWRegressor(loss_function='quantile', quantile_tau=half_significance) self.upper = VWRegressor(loss_function='quantile', quantile_tau=1.0-half_significance) def partial_fit(self, X, y): self.lower.fit(X, y) self.upper.fit(X, y) def vw_predict_interval(self, X): lower = self.lower.predict(X) upper = self.upper.predict(X) return lower, upper def get_params(self): return {'lower': self.lower.get_params(), 'upper': self.upper.get_params()} def __getstate__(self): state = {} state['lower'] = dict( params=self.lower.get_params(), coefs=self.lower.get_coefs(), fit=self.lower.fit_) state['upper'] = dict( params=self.upper.get_params(), coefs=self.upper.get_coefs(), fit=self.upper.fit_) return state def __setstate__(self, state): self.lower.set_params(**state['lower']['params']) self.lower.set_coefs(state['lower']['coefs']) self.lower.fit_(state['lower']['fit']) self.upper.set_params(**state['upper']['params']) self.upper.set_coefs(state['upper']['coefs']) self.upper.fit_(state['upper']['fit']) def load_arff_data(filepath): with open(str(filepath), 'r') as f: decoder = arff.ArffDecoder() d = decoder.decode(f, encode_nominal=True) # tvas: We are assuming the target/dependent is the last column data = np.array(d['data']) X = data[:, :-1] y = data[:, -1] return X, y def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--algorithm", required=True, choices=['vw', 'mf']) parser.add_argument("--input", required=True, help="Path to the folder containing the arff files.") parser.add_argument("--output", type=str, help="Path to output folder. If not provided will create a dir named" "MondrianForest under the input directory.") parser.add_argument("--n_estimators", type=int, default=10, help="Number of trees to use.") parser.add_argument("--confidence", type=float, default=0.9, help="Confidence level for intervals.") parser.add_argument("--window-size", type=int, default=1000, help="Size of evaluation window.") parser.add_argument("--repeats", type=int, default=1, help="Number of times to repeat each experiment") parser.add_argument("--overwrite", default=False, action="store_true", help="When given, it will not check if the output folder exists already.") parser.add_argument("--verbose", type=int, default=0, help="Provide additional output in the console, 1 for per experiment progress, " "2 to include per-window output") parser.add_argument("--njobs", type=int, default=1, help="Number of repeat experiments to run in parallel") parser.add_argument("--no-additional-output", default=False, action="store_true", help="When given, will not create predictions file and other computational metrics.") return parser.parse_args() def main(): args = parse_args() data_path = Path(args.input).absolute() if args.output is None: args.output = str(data_path / "MondrianForest") output_path = Path(args.output).absolute() output_path.mkdir(parents=True, exist_ok=args.overwrite) scorers = {"mean interval size": mean_interval_size, "mean error rate": mean_error_rate} learner_params_list = None if len(list(data_path.glob("*.arff"))) == 0: raise FileNotFoundError("Could not find any arff files under {}".format(data_path)) for filepath in data_path.glob("*.arff"): X, y = load_arff_data(filepath) print("Running experiments on {}".format(filepath.name)) # TODO: Nested parallelism, across files and repeats try: with Parallel(n_jobs=args.njobs, verbose=args.verbose) as parallel: learner_params_list = parallel( delayed(run_experiment)(i, filepath, output_path, scorers, args, X, y) for i in range(args.repeats)) except: "Runtime error for dataset: {}".format(filepath.name) # Write experiment parameters to file if learner_params_list is None: raise Exception("No experiments performed, was the input dir correct?") results = {"arguments": vars(args), "learner_params": learner_params_list[0]} out_file = output_path / "settings.json" out_file.write_text(json.dumps(results)) print("Output created under :{}".format(output_path)) def run_experiment(i, input_file, output_path, scorers, args, X, y): np.random.seed() window_size = args.window_size print("Running repeat {}/{}".format(i + 1, args.repeats)) # Create and evaluate a regressor if args.algorithm == 'mf': regressor = MondrianForestRegressor(n_estimators=args.n_estimators) else: regressor = VWIntervalRegressor(args.confidence) # If asked to save predictions, create requisite file pred_path = output_path / (input_file.stem + "_{}.pred".format(i)) if not args.no_additional_output else None results = prequential_interval_evaluation( regressor, X, y, args.confidence, scorers, args.window_size, verbose=args.verbose, additional_output=pred_path) # Create index column num_windows = int(np.ceil(X.shape[0] / window_size)) for score in scorers.keys(): assert num_windows == len(results[score]) window_index_list = list(range(window_size, (window_size * num_windows), window_size)) # Last element of index is the dataset size, consistent with MOA window_index_list.append(X.shape[0]) results["index"] = window_index_list # Save scores and index columns to csv included_columns = ["index"] included_columns.extend(sorted(results.keys())) # Create a df with only the score measurements and the index df = pd.DataFrame({k: results[k] for k in included_columns}) df.to_csv(output_path / (input_file.stem + "_{}.csv".format(i)), index=False) return regressor.get_params() if __name__ == "__main__": main()
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,210
Sandy4321/uncertain-trees-experiments
refs/heads/master
/interval_metrics.py
""" Parses the prediction files from MOA and skgarden output and creates normalized metrics for the intervals. """ import argparse import json from pathlib import Path from collections import OrderedDict, defaultdict import re import sys import logging as log import pandas as pd import numpy as np from natsort import natsorted from tabulate import tabulate from joblib import Parallel, delayed from generate_figures import sort_nicely, gather_metric MOA_METHODS = {"OnlineQRF", "OoBConformalRegressor", "OoBConformalApproximate", "PredictiveVarianceRF", "CPExact", "CPApproximate", "SGDQR"} def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--input", required=True, help="A dir containing sub-dirs of results, one per method." "The sub-dirs contain csv files with output, one per dataset, per" "experiment repeat." "Sub-directory names will be used as method names in the plots.") parser.add_argument("--output", required=True, help="The folder to create the output in") parser.add_argument("--only-pred-files", action="store_true", default=False, help="When given, will not calculate metrics, only create formatted prediction files." " Use when you want RIS metrics for generate_figures with large datasets.") parser.add_argument("--overwrite", action="store_true", default=False, help="When given, will not check if the output folder already exists ," "potentially overwriting its contents.") parser.add_argument("--window-size", help="The window size to use to calculate the per window metrics.") parser.add_argument("--expected-mer", type=float, default=0.1, help="The expected MER for these experiments.") parser.add_argument("--table-order", nargs='+', help="The order to put the table columns in. Should " "match the method directory names.") # parser.add_argument("--njobs", type=int, default=1, # help="Number of prediction files to process in parallel.") alg_selection = parser.add_mutually_exclusive_group() alg_selection.add_argument("--include-only", nargs='+', help=" Include only the provided output directories") alg_selection.add_argument("--exclude", nargs='+', help=" Exclude the provided output directories") parser.add_argument("--force-moa", action="store_true", default=False, help="Enforce parsing of the dirs using the MOA format." "Use when directory names don't match a method name (e.g. OnlineQRF)," "Otherwise, MondrianForest parsing is used as the default.") parser.add_argument("--njobs", help="The number of jobs to use for prediction file parsing/creation." "The default is to use all available cores.", type=int, default=-1) return parser.parse_args() def parse_moa_line(line: str) -> str: # Expected line format: "Out 0: interval_low interval_high ,true_value" parsed_line = line[6:].replace(',', '').strip().replace(' ', ',') return parsed_line def parse_skgarden_line(line: str) -> str: # Expected line format: "[interval_low interval_high], [true_value]" re_line = re.sub(r"[\[\],]", '', line).strip() parsed_line = re.sub(' +', ',', re_line) return parsed_line def parse_file(filepath: Path, force_moa): """ Reads a prediction file created either by MOA or skgarden_experiments, and creates a csv with the values, formatted as "interval_low,interval_high,true_value" The files are created under the same dir as the input .pred file, with the extension .pred.csv :param filepath: Path A Path object to a predictions file :param force_moa: When true will force MOA parsing to be used, regardless of containing directory name """ if not filepath.with_suffix(".pred.csv").exists(): # If the containing directory is one of the MOA methods, or we enforce it, use the MOA parser if filepath.parent.name in MOA_METHODS or force_moa: parse_line = parse_moa_line else: # Otherwise we assume it's a skgarden_experiments generated output file parse_line = parse_skgarden_line with filepath.open() as infile, filepath.with_suffix(".pred.csv").open('w') as outfile: outfile.write("interval_low,interval_high,true_value\n") for line in infile: parsed_line = parse_line(line) outfile.write(parsed_line + '\n') # TODO: Actually it seems like skgarden parsing works for both, pandas assumes the "Out: " is an index # TODO: Maybe include a sanity check here just to inform the user? The outcome is correct anyway def create_pred_csvs(method_dir: Path, force_moa: bool, njobs): with Parallel(njobs) as parallel: parallel(delayed(parse_file)(res_file, force_moa) for res_file in method_dir.glob("*.pred")) def normalize(x, true_col): normalized = (x - min(true_col)) / (max(true_col) - min(true_col)) return normalized def gather_method_results(method_dir: Path, significance): """ Goes through all generated .pred.csv files in a method dir, collects the results per dataset, and creates a list of metric dataframes per metric.1 :param method_dir: A Path to method dir, contains repeats of experiments, with the suffix _x.pred.csv where x is the experiment repeat index. :return: Returns a dictionary {dataset_name: metric_df_list} """ res = defaultdict(list) for res_file in method_dir.glob("*.pred.csv"): # Get rid of any suffixes in the filename, and the _X repeat indicator base_name = res_file.name.split('.')[0][:-2] df = pd.read_csv(res_file) df.index = range(len(df)) # For MOA files it was using "Out\:" as index which was causing issues df["interval_size"] = np.abs(df["interval_high"] - df["interval_low"]) true_max = df["true_value"].max() true_min = df["true_value"].min() df["relative_interval_size"] = df["interval_size"] / (true_max - true_min) df['error_rate'] = np.where( (df['true_value'] <= df['interval_high']) & (df['true_value'] >= df['interval_low']), 0, 1) interval_deviation_upper = np.where((df['true_value'] > df['interval_high']), df['true_value'] - df['interval_high'], 0) interval_deviation_lower = np.where((df['true_value'] < df['interval_low']), df['interval_low'] - df['true_value'], 0) relative_interval_deviation = (interval_deviation_lower + interval_deviation_upper) / (true_max - true_min) assert np.all(relative_interval_deviation >= 0), "Deviation should be >= 0" df["quantile_loss"] = np.where( (df['true_value'] <= df['interval_high']) & (df['true_value'] >= df['interval_low']), df["relative_interval_size"] * significance, significance * df["relative_interval_size"] + relative_interval_deviation) res[base_name].append(df) return res def main(): args = parse_args() input_path = Path(args.input) output_path = Path(args.output) assert output_path.parent != input_path, "Setting output path under input can cause issues, choose another path." output_path.mkdir(parents=True, exist_ok=args.overwrite) # Get all the directories under the input path method_dirs = [subpath for subpath in input_path.iterdir() if subpath.is_dir()] assert len(method_dirs) > 0, "There should be at least one directory under the input, found 0!".format(method_dirs) if args.exclude is not None: method_dirs = [subpath for subpath in method_dirs if subpath.name not in args.exclude] elif args.include_only is not None: method_dirs = [subpath for subpath in method_dirs if subpath.name in args.include_only] # Check if prediction file pre-processing has been done, otherwise do it # Gather the results for each method # Format: {method: {ds_name: measurement_df_list}} method_to_dsname_to_result_df_list = OrderedDict() sorted_dirs = sort_nicely(method_dirs) mean_tables = {} # TODO: For experiments with large outputs (prediction files with many lines) we have computationa and memory issues # The problem is that we maintain all results as a Pandas dataframe. For example for an experiment with 1M rows, # 10 repeats, 3 methods, the prediction data frames hold 90M float/double values. Processing these becomes # a challenge, we should find a way to 1) not store the complete data in memory 2) parallelize by method+metric for method_dir in sorted_dirs: # TODO: Have proper check that each result_X.csv file has respective result_X.pred if len(list(method_dir.glob("*.pred"))) == 0: raise FileNotFoundError("No prediction files found in {}!".format(method_dir)) num_pred_files = len(list(method_dir.glob("*.pred"))) num_processed_pred_files = len(list(method_dir.glob("*.pred.csv"))) if num_processed_pred_files != num_pred_files: print(".pred.csv files missing in {}. Creating {}/{}".format( method_dir.name, num_pred_files - num_processed_pred_files, num_pred_files)) create_pred_csvs(method_dir, args.force_moa, args.njobs) # After .pred.csv files have been created, gather metrics if not args.only_pred_files: method_to_dsname_to_result_df_list[method_dir.name] = gather_method_results(method_dir, args.expected_mer) if args.only_pred_files: print("Finished creating prediction files, exiting...") sys.exit() else: print("Prediction files created, continuing with metric calculation...") for metric in ["error_rate", "relative_interval_size", "quantile_loss"]: method_ds_metric = OrderedDict() for method, ds_to_measurements in method_to_dsname_to_result_df_list.items(): # TODO: Make it possible to iterate over metrics? method_ds_metric[method] = gather_metric(ds_to_measurements, metric) all_names = [] method_to_mean_measurements = OrderedDict() method_to_median_measurements = OrderedDict() method_to_std_measurements = OrderedDict() for method, ds_name_to_measurements in method_ds_metric.items(): ds_names = [] ds_means = [] ds_medians = [] ds_stds = [] # Get the measurements for the requested data, and calc their stats for dataset_name, metric_df in natsorted(ds_name_to_measurements.items()): if metric == "error_rate": # Error rate requires special treatment error_counts = metric_df.sum(axis=1) error_rates = error_counts / metric_df.shape[1] overall_mean = error_rates.mean() overall_median_mean = error_rates.median() overall_std_mean = error_rates.std() else: # Then it's RIS or quantile_loss relative_interval_means = metric_df.mean() # Mean for each example over repeats relative_interval_medians = metric_df.median() # Median for each example over repeats relative_interval_stds = metric_df.std() # Std for each example over repeats overall_mean = relative_interval_means.mean() overall_median_mean = relative_interval_medians.mean() overall_std_mean = relative_interval_stds.mean() ds_means.append(overall_mean) ds_medians.append(overall_median_mean) ds_stds.append(overall_std_mean) ds_names.append(dataset_name) all_names.append(ds_names) method_to_mean_measurements[method] = ds_means method_to_median_measurements[method] = ds_medians method_to_std_measurements[method] = ds_stds # Assert datasets are in correct order between methods prev_names = [] for ds_names in all_names: if len(prev_names) == 0: prev_names = ds_names continue for left_name, right_name in zip(prev_names, ds_names): assert left_name == right_name, \ "DS order mismatch: {}, {}".format(left_name, right_name) def add_stats(df): df.loc['Mean'] = df.mean() df.loc['Median'] = df.median() df.loc['Std'] = df.std() return df def create_df(method_to_measurements_dict): dictionary = OrderedDict() dictionary["Dataset"] = ds_names dictionary.update(method_to_measurements_dict) df = pd.DataFrame(dictionary) df = df.set_index("Dataset") return add_stats(df) mean_aggregate_metric_df = create_df(method_to_mean_measurements) median_aggregate_metric_df = create_df(method_to_median_measurements) std_aggregate_metric_df = create_df(method_to_std_measurements) table_outpath = Path(args.output) / metric.replace(' ', '_') mean_aggregate_metric_df.to_csv(table_outpath.with_suffix(".means.csv")) median_aggregate_metric_df.to_csv(table_outpath.with_suffix(".medians.csv")) std_aggregate_metric_df.to_csv(table_outpath.with_suffix(".std.csv")) def create_table_str(df): float_format = ".3f" if metric in ["error_rate", "quantile_loss"] else ".2f" return tabulate(df, headers='keys', tablefmt='latex_booktabs', floatfmt=float_format) # Will try to rearrange columns in the order provided by the user, otherwise just sorted. order = args.table_order if args.table_order is not None else sorted(mean_aggregate_metric_df.keys()) try: mean_aggregate_metric_df = mean_aggregate_metric_df[order] median_aggregate_metric_df = median_aggregate_metric_df[order] std_aggregate_metric_df = std_aggregate_metric_df[order] except KeyError: # If a column was missing just leave them as they were log.warning("Could not rearrange colums to {}".format(order)) pass mean_aggregate_metric_df = mean_aggregate_metric_df[order] median_aggregate_metric_df = median_aggregate_metric_df[order] std_aggregate_metric_df = std_aggregate_metric_df[order] mean_tables[metric] = mean_aggregate_metric_df # TODO: Create figures? Maybe window metric? mean_table_str = create_table_str(mean_aggregate_metric_df) median_table_str = create_table_str(median_aggregate_metric_df) std_table_str = create_table_str(std_aggregate_metric_df) table_outpath.with_suffix(".means.tex").write_text(mean_table_str) table_outpath.with_suffix(".medians.tex").write_text(median_table_str) table_outpath.with_suffix(".stds.tex").write_text(std_table_str) # Write json file with arguments to keep track of how output was generated json_file = output_path / "interval_metrics_settings.json" settings = vars(args) json_file.write_text(json.dumps(settings)) # Ensure that the method dirs were not numbers, i.e. not repeats of confidence experiments. def is_number(s): try: float(s) return True except ValueError: return False for method_name in method_dirs: if is_number(method_name.name): log.warning("Seems like you're running this on top of confidence output, so we won't create utility output.") log.warning("Method list was: {}.".format(method_dirs)) log.warning("Use confidence_utility_calculation.py instead!") sys.exit() # Create adjusted utility table with step time/utility function (using expected MER as deadline) # Compute utility as one minus the RIS mean_error_rates = mean_tables["error_rate"].iloc[:len(ds_names), ] # Drop the aggregate stats rows utility = 1 - np.minimum(mean_tables["relative_interval_size"].iloc[:len(ds_names), ], 1) util_path = Path(args.output) / "utility" utility.to_csv(util_path.with_suffix(".csv")) util_table_str = create_table_str(utility) util_path.with_suffix(".tex").write_text(util_table_str) # Step function adjusted_utils = np.where(mean_error_rates > args.expected_mer, 0, utility) # adjusted_utils = tuf(utility, mean_error_rates, step) # Build up the adjusted util dataframe, add dataset names, aggregate stats adj_util_df = pd.DataFrame(adjusted_utils, columns=utility.columns.tolist()) adj_util_df["Dataset"] = ds_names adj_util_df = add_stats(adj_util_df.set_index("Dataset")) adj_util_path = Path(args.output) / "adjusted_utility" adj_util_df.to_csv(adj_util_path.with_suffix(".csv")) ajd_util_table_str = create_table_str(adj_util_df) adj_util_path.with_suffix(".tex").write_text(ajd_util_table_str) if __name__ == '__main__': main()
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,211
Sandy4321/uncertain-trees-experiments
refs/heads/master
/measurement_aggregations.py
""" Creates aggregations over datasets from the per method/dataset results created in generate_figures.py in the create_tables method. Provided a directory created with the above method will create additional output in the same directory with informative measures over all datasets for which we have results. """ import argparse from pathlib import Path import pandas as pd def parse_args(): parser = argparse.ArgumentParser() parser.add_argument("--input", required=True, help="The directory containing the input files." "Must have been created with generate_figures" " --create-tables.") parser.add_argument("--expected-error", default=0.1, help="The expected error level for the experiment." "Used to calculate the avg deviation from it.") return parser.parse_args() def main(): args = parse_args() input_path = Path(args.input) mer_file = input_path / "mean_error_rate.means.csv" mer_df = pd.read_csv(mer_file) # For each metric value, take its absolute difference with the requested confidence abs_mer_diff_df = mer_df.drop("Dataset", axis=1).apply(lambda x: abs(x - args.expected_error), axis=1) mean_abs_mer_diff = abs_mer_diff_df.mean() std_abs_mer_diff = abs_mer_diff_df.std() mean_abs_mer_diff.to_csv(input_path / "mean_abs_mer_diff.csv") std_abs_mer_diff.to_csv(input_path / "std_abs_mer_diff.csv") if __name__ == "__main__": main()
{"/moa_experiments.py": ["/parameter_sweep.py"], "/skgarden_experiments.py": ["/evaluation_functions.py"], "/interval_metrics.py": ["/generate_figures.py"]}
59,216
redcartel/emojihex
refs/heads/master
/src/util.py
import logging logger = logging.Logger("logger") logger.addHandler(logging.FileHandler("/tmp/pgame.log")) def log(message): logger.info(message) def y_x_to_row_col(y, x): row = y // 4 col = (x + 4) // 8 if row % 2 else x // 8 return row, col def y_x_to_offsets(y, x): row = y // 4 yoff = y % 4 xoff = (x + 4) % 8 if row % 2 else x % 8 return yoff, xoff # DIRECTIONS: 0 = right, 1 = down/right 2 = down/left 3 = left 4 = up/left 5 = up/right # MOVE_DELTA[y%2][2] = delta y, delta x to move down and to the left MOVE_DELTAS = ( ((0,1), (1,0), (1,-1), (0, -1), (-1, -1), (-1, 0)), ((0, 1), (1, 1), (1, 0), (0, -1), (-1, 0), (-1, 1)) )
{"/main.py": ["/src/util.py", "/src/state.py"], "/src/controls.py": ["/src/state.py"], "/src/display.py": ["/src/state.py", "/src/util.py", "/src/model.py", "/src/resources.py"]}
59,217
redcartel/emojihex
refs/heads/master
/src/resources.py
import curses CONS = lambda x : None # used as empty object def init(stdscr): CONS.C_BLACK = 16 curses.init_color(CONS.C_BLACK, 0, 0, 0) CONS.C_WHITE = 17 curses.init_color(CONS.C_WHITE, 1000, 1000, 1000)
{"/main.py": ["/src/util.py", "/src/state.py"], "/src/controls.py": ["/src/state.py"], "/src/display.py": ["/src/state.py", "/src/util.py", "/src/model.py", "/src/resources.py"]}
59,218
redcartel/emojihex
refs/heads/master
/src/model.py
from random import randrange GAME = { "maprows": 24, "mapcols": 40, "turn": 0 } MAP = [[]] ENTITIES = [] {y:{x:[] for x in range(GAME["mapcols"])} for y in range(GAME["maprows"])} def init_entities(): global ENTITIES cols = GAME["mapcols"] rows = GAME["maprows"] ENTITIES = [[[] for x in range(cols)] for y in range(rows)] def init(): init_entities() # init_map() randomize_map() place_entity(1,1,{"label": "X"}) #randomize_entities() def randomize_map(): MAP.clear() for row in range(GAME["maprows"]): new_row = [] for col in range(GAME["mapcols"]): new_row.append({"label": randrange(100)}) MAP.append(new_row) def randomize_entities(n = 100): place_entity(2,3, {"label": "X"}) return for _ in range(n): y = 10 x = 15 assert len(ENTITIES) > y, f"{len(ENTITIES)}" place_entity(y,x, {"label": "X"}) def remove_entity(entity): y = entity["y"] x = entity["x"] if entity not in ENTITIES[y][x]: raise(ValueError(f"Entity {entity} not at {y} {x}")) ENTITIES[y][x].remove(entity) def place_entity(y, x, entity): entity["y"] = y entity["x"] = x ENTITIES[y][x].append(entity) def get_entities(y, x): if 0 <= y < GAME["maprows"] and 0 <= x < GAME["mapcols"]: return ENTITIES[y][x] return [] def get_square(row, col): if 0 <= row < GAME["maprows"] and 0 <= col < GAME["mapcols"]: return MAP[row][col] return {}
{"/main.py": ["/src/util.py", "/src/state.py"], "/src/controls.py": ["/src/state.py"], "/src/display.py": ["/src/state.py", "/src/util.py", "/src/model.py", "/src/resources.py"]}
59,219
redcartel/emojihex
refs/heads/master
/src/state.py
import os STATE = { "window_x": 0, "window_y": 0, "select_x": 5, "select_y": 5, "mode": 1 } def move_param(pname, y, x, mode="abs"): if mode == "abs": STATE[pname + "_x"], STATE[pname + "_y"] = x, y elif mode == "rel": STATE[pname + "_x"] += x STATE[pname + "_y"] += y else: raise ValueError("mode must be abs or rel") def get_param(pname): return STATE[pname] def set_param(pname, value, mode="abs"): if mode == "abs": STATE[pname] = value elif mode == "rel": STATE[pname] += value else: raise ValueError("mode must be abs or rel") MAP = [[]] ENTITIES = {}
{"/main.py": ["/src/util.py", "/src/state.py"], "/src/controls.py": ["/src/state.py"], "/src/display.py": ["/src/state.py", "/src/util.py", "/src/model.py", "/src/resources.py"]}
59,220
redcartel/emojihex
refs/heads/master
/main.py
import curses from random import randrange from src import controls from src import display from src import model from src import resources from src.util import logger from src.state import get_param import datetime def main(stdscr): logger.info(f"\nmain() at {datetime.datetime.now().isoformat()}") controls.init(stdscr) resources.init(stdscr) display.init(stdscr) model.init() while get_param("mode") != -1: display.display() controls.dispatch_input() if __name__ == "__main__": curses.wrapper(main)
{"/main.py": ["/src/util.py", "/src/state.py"], "/src/controls.py": ["/src/state.py"], "/src/display.py": ["/src/state.py", "/src/util.py", "/src/model.py", "/src/resources.py"]}
59,221
redcartel/emojihex
refs/heads/master
/src/controls.py
import curses from src.state import move_param, get_param, set_param STDSCR = curses.initscr() def init(stdscr): global STDSCR STDSCR = stdscr def dispatch_input(): key = STDSCR.getch() if key == ord('q'): set_param("mode", -1) elif key == curses.KEY_UP: move_param("window", -1, 0, "rel") elif key == curses.KEY_RIGHT: move_param("window", 0, 1, "rel") elif key == curses.KEY_DOWN: move_param("window", 1, 0, "rel") elif key == curses.KEY_LEFT: move_param("window", 0, -1, "rel") elif key == ord('h'): move_param("select", 0, -1, "rel") elif key == ord('j'): move_param("select", 1, 0, "rel") elif key == ord('k'): move_param("select", -1, 0, "rel") elif key == ord('l'): move_param("select", 0, 1, "rel")
{"/main.py": ["/src/util.py", "/src/state.py"], "/src/controls.py": ["/src/state.py"], "/src/display.py": ["/src/state.py", "/src/util.py", "/src/model.py", "/src/resources.py"]}
59,222
redcartel/emojihex
refs/heads/master
/src/display.py
import curses from random import randrange from collections import OrderedDict from src.state import get_param from src.util import y_x_to_offsets, y_x_to_row_col from src.model import get_square, get_entities, GAME from src.resources import CONS STDSCR = curses.initscr() TERRAIN = OrderedDict() TERRAIN['OCEAN'] = '🌊'[0] + '\0' TERRAIN['SHALLOW'] = '💧'[0] + '\0' TERRAIN['PLAINS'] = '🌾'[0] + '\0' TERRAIN['GRASSLAND'] = '🌱'[0] + '\0' TERRAIN['FOREST'] = '🌳'[0] + '\0' TERRAIN['HILLS'] = '🌄'[0] + '\0' TERRAIN['DESERT'] = '🏜'[0] + '\0' TERRAIN['TUNDRA'] = '⛄'[0] + '\0' TERRAIN['MOUNTAIN'] = '⛰'[0] + '\0' TERRAIN_LIST = list(TERRAIN.values()) ENTS = OrderedDict() ENTS['NONE'] = "\u2003" + '\0' ENTS['WORKER'] = '👨‍🔧'[0] + '\0' ENTS['WARRIOR'] = '💪'[0] + '\0' def init(stdscr): global STDSCR if stdscr: STDSCR = stdscr # curses.init_pair(0, curses.COLOR_WHITE, curses.COLOR_BLACK) curses.init_pair(1, curses.COLOR_BLACK, curses.COLOR_WHITE) curses.curs_set(0) STDSCR.refresh() HIGHLIGHTS = {} def display(): clear_highlights() STDSCR.clear() highlight(get_param("select_y"), get_param("select_x")) drawmap(get_param("window_y"), get_param("window_x")) STDSCR.refresh() def map_square_chars(mapsquare, ents=[], row=0, col=0): rows = [" " * 8] * 4 if not mapsquare: return rows military = ENTS['NONE'] civilian = ENTS['NONE'] if ents: if len(ents) >= 2: military = ENTS['WARRIOR'] civilian = ENTS['WORKER'] elif (row + col) % 2: military = ENTS['WARRIOR'] else: civilian = ENTS['WORKER'] entstr = military + civilian assert(len(entstr) == 4) terrain = TERRAIN_LIST[row // 2 * col // 2 % len(TERRAIN_LIST)] terrainstr = terrain * 2 rows[0] = "+{:=^7}".format("{}={}".format(str(row), str(col))) rows[1] = "| " + entstr + ' ' rows[2] = "| " + terrainstr + ' ' rows[3] = "| " + ' ' * 3 return rows def drawmap(mapy, mapx, drawy = 0, drawx = 0, height = None, width = None): if width is None: stoprow = mapy + curses.LINES - drawy - 1 stopcol = mapx + curses.COLS - drawx - 1 else: stoprow = mapy + height stopcol = mapx + width for y in range(mapy, stoprow): for x in range(mapx, stopcol): screen_y = y - mapy + drawy screen_x = x - mapx + drawx char, pair = y_x_to_char(y, x), y_x_to_pair(y, x) lchar = y_x_to_char(y, x-1) if ord(lchar) >= 128512 or char == '\0': pass else: STDSCR.addstr(screen_y, screen_x, char, pair) def y_x_to_char(y, x): row, col = y_x_to_row_col(y, x) square = get_square(row, col) if not square: return '\0' yoff, xoff = y_x_to_offsets(y, x) ents = get_entities(y, x) chargrid = map_square_chars(square, ents, row, col) return chargrid[yoff][xoff] def y_x_to_pair(y, x): row, col = y_x_to_row_col(y, x) yoff, xoff = y_x_to_offsets(y, x) square = get_square(row, col) char = y_x_to_char(y, x) highlight = get_highlight(y, x) if highlight: return curses.color_pair(1) return curses.color_pair(0) # def y_x_to_mapchar_pair(y, x): # row, col = y_x_to_row_col(y, x) # yoff, xoff = y_x_to_offsets(y, x) # square = get_square(row, col) # ents = get_entities(row, col) # display = square_display(square, ents, row, col) # char = display[yoff][xoff] # pair = y_x_to_color_pair # pair = get_highlight(row, col) # return char, pair def clear_highlights(): HIGHLIGHTS.clear() def get_highlight(row, col): if row not in HIGHLIGHTS or col not in HIGHLIGHTS[row]: return 0 if HIGHLIGHTS[row][col]: return 1 def highlight(row, col, pairnumber=1): if row not in HIGHLIGHTS: HIGHLIGHTS[row] = {col: 1} else: HIGHLIGHTS[row][col] = 1
{"/main.py": ["/src/util.py", "/src/state.py"], "/src/controls.py": ["/src/state.py"], "/src/display.py": ["/src/state.py", "/src/util.py", "/src/model.py", "/src/resources.py"]}
59,223
AdamJacoby/Hopf
refs/heads/master
/HopfConstructions_Functions.py
from itertools import product import scipy.sparse as sps import numpy as np #Constructs the twist isomorphism from A\ot B to B\otA #Columns correspond to input rows to outputs def Twist_old(dimA,dimB): dim=dimA*dimB out = sps.csr_matrix((dim,dim),dtype=np.int8) for i,j in product(range(0,dimA),range(0,dimB)):#i is the index of A and j is the index of B out[i+j*dimA,dimB*i+j]=1 return out def Twist(dimA,dimB): dim=dimA*dimB zeros = np.zeros(dim,dtype=np.int8) out = zeros out[0,0]=1 out = sps.csr_matrix(out) for i in range(1,dimB): temp_vector = zeros temp_vector[dimB*i]=1 temp_vector = sps.csr_matrix(temp_vector) out = sps.vstack([out,temp_vector]) for j in range(1,dimA): for i in range(0,dimB)):#i is the index of A and j is the index of B temp_vector = zeros temp_vector[dimB*i+j]=1 temp_vector = sps.csr_matrix(temp_vector) out = sps.vstack([out,temp_vector]) return out #Take the kron product of more then two sparse matrixes at once def Spare_Multi_Kron(*arg): out = arg[0] list = arg[1:len(arg)] for temp in list: out =sps.kron(out,temp) return out #creates a list of the standard basis vectors for a vector space of dimension dim def CreateBasisVectors(dim): out = [] for i in range(0,dim): temp = np.zeros((dim),dtype=complex) temp[i]=1 out.append(temp) return out #creates a list of the standard basis vectors for a vector space of dimension dim def CreateSparseBasisVectors(dim): out = [] for i in range(0,dim): temp = [0]*dim temp[i]=1 out.append(sps.csr_matrix(temp,dtype=np.int8)) return out #given an imput of (dimA1,dimA2,...,dimAn,d) for d an interger it computes the map id_1\ot id_2\ot id_{d-1}\ot \tau\ot id_{d+2}\ot..\id_n def Center_Twist(*arg): length = len(arg) d = arg[length-1] spaces = arg[:length-1] Ldim=1#Will be sum_{i=1}^{d-1} dim A_i for dim in spaces[:d-1]: Ldim = Ldim*dim Rdim=1#Will be sum_{i=1}^{d-1} dim A_i for dim in spaces[d+1:]: Rdim = Rdim*dim return Spare_Multi_Kron(sps.identity(Ldim,dtype=complex,format='csr'),Twist(spaces[d-1],spaces[d]),sps.identity(Rdim,dtype=complex,format='csr')) #Takes two algebras as inputs and outputs the matrix for their tensor product def Tensor_Mult(A,B): return sps.kron(A.mult,B.mult).dot(Center_Twist(A.dim,B.dim,A.dim,B.dim,2)) #Takes two coalgebras and returns the comultiplication matrix of their tensor product def Tensor_Comult(A,B): return Center_Twist(A.dim,A.dim,B.dim,B.dim,2).dot(sps.kron(A.comult,B.comult)) #Given an element a in a space A with multiplication matrix mult return the matrix for the map b mapsto ab (perhaps construct it using hstack command latter) def Left_Action_Matrix(element,mult): dim = len(element) element = sps.csr_matrix(element) V = CreateSparseBasisVectors(dim) columns=[] for k in range(0,dim): columns.append(sps.kron(element,V[k]).transpose()) temp = sps.hstack(columns) return mult.dot(temp) #Given an element a in a space A with multiplication matrix mult return the matrix for the map b mapsto ab (perhaps construct it using hstack command latter) def Right_Action_Matrix(element,mult): dim = len(element) element = sps.csr_matrix(element) V = CreateSparseBasisVectors(dim) columns=[] for k in range(0,dim): columns.append(sps.kron(V[k],element).transpose()) temp = sps.hstack(columns) return mult.dot(temp) #Determins the strongest structure that can be put on A\ot B def Tensor_Type(A,B): _type='VectorSpace' if A._type == 'HopfAlgebra': if B._type=='HopfAlgebra' or B._type=='Algebra' or B._type=='Bialgebra' or (B._type=='ModuleAlgebra' and B.ring==A.name) or (B._type=='Module' and B.ring==A.name) or B._type=='CoAlgebra': type=B._type elif A._type == 'BiAlgebra': if B._type=='HopfAlgebra': _type = 'BiAlgebra' elif B._type=='Algebra' or B._type=='Bialgebra' or (B._type=='ModuleAlgebra' and B.ring==A.name) or (B._type=='Module' and B.ring==A.name) or B._type=='CoAlgebra': _type == B._type elif A._type == 'ModuleAlgebra': if (B._type=='ModuleAlgebra' and B.ring==A.ring) or ((B._type=='HopfAlgebra' or B._type=='BiAlgebra') and B.name==A.ring): _type='ModuleAlgebra' elif B._type=='Algebra' or (B._type=='Module' and B.ring==A.ring): _type==B._type elif A._type=='Module': if (B._type=='Module' or B._type =='ModuleALgebra') and A.ring==B.ring: _type=='Module' elif (B._type =='HopfAlgebra' or B._type=='BiAlgebra') and A.ring==B.name: _type=='Module' elif A._type=='CoAlgebra': if B._type=='HopfAlgebra' or B._type=='BiAlgebra' or B._type=='CoAlgebra': _type=='CoAlgebra' return _type #Constructs the comultiplication matrix of H twisted by J def Drinfeld_Twist_Comult(H,J,JI): tensormult = Tensor_Mult(H,H) L_J=Left_Action_Matrix(J,tensormult) R_JI=Right_Action_Matrix(JI,tensormult) return (L_J.dot(R_JI)).dot(H.comult) #Constructs the antipode matrix of H twisted by J def Drinfeld_Twist_Antipode(H,J,JI): Id=sps.identity(H.dim,dtype=complex,format='csr') UJ=H.mult.dot(sps.kron(Id,H.antipode).dot(J)) UJI=H.mult.dot(sps.kron(H.antipode,Id).dot(JI)) L_UJ=Left_Action_Matrix(UJ,H.mult) R_UJI=Right_Action_Matrix(UJI,H.mult) return R_UJI.dot(L_UJ.dot(H.antipode)) #Takes a Hopf algebra and returns the action matrix for the adjoint action def Left_Adjoint_Action(H): dim = H.dim Id = sps.identity(dim,dtype=complex,format='csr') twist = Center_Twist(dim,dim,dim,2) return H.mult.dot(sps.kron(H.mult,Id).dot(twist.dot(sps.kron(H.comult,Id)))) #Given A a H-module algebra and H a Hoipf algebra returns the multiplication matrix of A#H def Left_Smash_Product_Mult(A,H): IdA=sps.identity(A.dim,dtype=complex,format='csr') IdH=sps.identity(A.dim,dtype=complex,format='csr') IdAH=sps.identity(A.dim*H.dim,dtype=complex,format='csr') left_comult=sps.kron(sps.kron(IdA,H.comult),IdAH) twist = Center_Twist(A.dim,H.dim,H.dim,A.dim,H.dim,3) act_and_hmult=Spare_Multi_Kron(IdA,A.action,H.mult) amult = sps.kron(A.mult,IdH) return amult.dot(act_and_hmult.dot(twist.dot(left_comult))) #Returns the element_names list of A$H def Left_Smash_Element_Names(A,H): out = [] for iB in range(0,H.dim): for iA in range(0,A.dim): out.append(A.element_names[iA]+'#'+H.element_names[iB]) return out #Constructs the element names of the dual def Dual_Element_Names(ele_names): out = [] for ele in ele_names: out.append('P_('+ele+')') return out
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,224
AdamJacoby/Hopf
refs/heads/master
/Example_CyclicGroup.py
from ExampleGroup_Functions import * from HopfClass import HopfAlgebra import numpy as np import scipy.sparse as sps from itertools import product #Constructs the multiplication matrix of the cyclic group of order dim in csr sparse format def CyclicGroup_Mult_Matrix(dim): mult = np.zeros((dim,dim**2),dtype=complex) N=range(0,dim) for i,j in product(N,N): mult[(i+j)%dim,i*dim+j]=1 mult = sps.csr_matrix(mult.tolist(),dtype=complex) return mult def CyclicGroup_Antipode(dim): antipode = np.zeros((dim,dim),dtype=complex) for i in range(0,dim): antipode[i,(-i)%dim]=1 antipode = sps.csr_matrix(antipode.tolist(),dtype=complex) return antipode def CyclicGroup_Element_Names(dim,ele_name): out = [] for i in range(0,dim): out.append(ele_name+'^'+str(i)) return out def CyclicGroup(dim,element_name): mult = CyclicGroup_Mult_Matrix(dim) comult = Group_Comult_Matrix(dim) counit = Group_Counit(dim) int = Group_Integral(dim) antipode = CyclicGroup_Antipode(dim) name = 'C_'+str(dim) element_names = CyclicGroup_Element_Names(dim,element_name) out = HopfAlgebra(name,element_names,mult,comult,counit,antipode) out.Input_Integral(int) return out
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,225
AdamJacoby/Hopf
refs/heads/master
/HopfConstructions.py
import scipy.sparse as sps import sympy as sym import numpy as np from HopfConstructions_Functions import * from HopfClass import * from Frobenius_Tools import HigmanTrace #Given two spaces returns their tensor product with as much structure as possible def Tensor_Product(A,B): _type = Tensor_Type(A,B) name = A.name + '(T)' + B.name element_names=[] for iA in range(0,A.dim): for iB in range(0,B.dim): element_names.append(A.element_names[iA]+'(T)'+B.element_names[iB]) if _type == 'HopfAlgebra': mult=Tensor_Mult(A,B) comult=Tensor_Comult(A,B) counit=np.kron(A.counit,B.counit) antipode = sps.kron(A.antipode,B.antipode) out = HopfAlgebra(name,element_names,mult,comult,counit,antipode) if A.int_flag != 'no' and B.int_flag!='no': out.Input_Integral(np.kron(A.int,B.int)) elif _type == 'BiAlgebra': mult=Tensor_Mult(A,B) comult=Tensor_Comult(A,B) counit=np.kron(A.counit,B.counit) out = BiAlgebra(name,element_names,mult,comult,counit) elif _type == 'Algebra': mult=Tensor_Mult(A,B) out = Algebra(name,element_names,mult) elif _type == 'CoAlgebra': comult=Tensor_Comult(A,B) counit=np.kron(A.counit,B.counit) out = CoAlgebra(name,element_names,comult,counit) return out #Take a Hopf algebra and element J and J^{-1} as inputs and returns the Drinfeld twist of the coalgebra structure J and J^{-1} are input as np.arrays in H\ot H def Drinfeld_Twist(H,J,JI,twist_name): comult = Drinfeld_Twist_Comult(H,J,JI) name = H.name + '('+twist_name+')' antipode = Drinfeld_Twist_Antipode(H,J,JI) out = HopfAlgebra(name,H.element_names,H.mult,comult,H.counit,antipode) out.Input_Integral(H.int) return out #Takes as input a Hopf algebra and outputs the adjoint module as a module algebra def Left_Adjoint_Module(H): action = Left_Adjoint_Action(H) return ModuleAlgebra('ad'+H.name,H.name,action,H.element_names,H.mult) #Given a Hopf algebra H and an H module algebra A constructs the smashed product A#H def Left_Smash_Product(A,H): mult = Left_Smash_Product_Mult(A,H) ele_names = Left_Smash_Element_Names(A,H) return Algebra(A.name+'#'+H.name,ele_names,mult) def Dual_Hopf_Algebra(H): mult = H.comult.transpose() comult = H.comult.transpose() antipode = H.antipode.transpose() element_names = Dual_Element_Names(H.element_names) counit = np.zeros((H.dim),dtype=complex) counit[0]=1 return HopfAlgebra(H.name+'^*',element_names,mult,comult,counit,antipode)
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,226
AdamJacoby/Hopf
refs/heads/master
/ExampleGroup_Functions.py
import numpy as np from scipy.sparse import csr_matrix from itertools import product from HopfClass import HopfAlgebra import sympy.combinatorics as comb #Constructs the integral of a group algebra def Group_Integral(dim): out = np.zeros((dim),dtype=complex) for i in range(0,dim): out[i]=1 return out #Constructs the counit of a group algebra def Group_Counit(dim): out = np.zeros((dim),dtype=complex) for i in range(0,dim): out[i]=1 return out #Constructs the comultiplication of a group algebra def Group_Comult_Matrix(dim): temp=np.zeros((dim**2,dim),dtype=complex) for i in range(0,dim): temp[i+dim*i,i]=1 return csr_matrix(temp.tolist(),dtype=complex) #Takes the name,element names multiplication matrix and antipode matrix and outputs the corresponding group algebr with the identity def MakeGroupAlgebra(name,ele_names,mult,antipode): dim = len(ele_names) G = HopfAlgebra(name,ele_names,mult,Group_Comult_Matrix(dim),Group_Counit(dim),antipode) G.Input_Integral(Group_Integral(dim)) return G #Given a sympy permutation group object out puts the ocrresponding multiplication matrix def PermutationGroupInfo(P): Elements = list(P.elements) dim = len(Elements) Permutation_Size=max(list(Elements[0])) idenity = comb.Permutation(Permutation_Size) Elements.remove(idenity) Elements.insert(0,idenity) ele_names = [] for Element in Elements: ele_names.append(str(list(Element)).replace(" ","")) mult = np.zeros((dim,dim**2)) for i, j in product(range(0,dim),range(0,dim)):#Corresponds to g_i*g_j k = Elements.index(Elements[i]*Elements[j])#finds the lockation of g_i*g_j in the list Elements mult[k,i*dim+j]=1 mult = csr_matrix(mult.tolist(),dtype=np.int8) antipode = np.zeros((dim,dim)) for i in range(0,dim): inverse = Elements[i]**-1 j = Elements.index(inverse) antipode[j,i]=1 antipode = csr_matrix(antipode.tolist(),dtype=np.int8) return {'element_names':ele_names,'mult':mult,'antipode':antipode}
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,227
AdamJacoby/Hopf
refs/heads/master
/Example_Bpq.py
#This code constructs the following Hopf algebra #as an algebra it is KG for G = {sigma,tau,a,b|simga^p=tau^p=a^q=b^q=1[sigma,b]=[a,tau]=[ba]=[sigma,tau]=1,sigma*a=a^r*sigma,tau*b=b^r*tau} import numpy as np import scipy.sparse as sps from HopfClass import HopfAlgebra from HopfConstructions import Tensor_Product, Drinfeld_Twist from itertools import product from Example_GeneralizedDihedralGroup import GeneralizedDihedralGroup #Construnt a list of roots of unity the first one 1 the nextt is ptimitive def Roots_Of_Unity(n): out = [] for i in range(0,n): out.append(np.exp(i*2j*np.pi/n)) return out #two numbers p and q such that p|q-1 and roots a list of pth roots of unity out puts the twist J and J^{-1} as [J,J^{-1}] def Bpq_Twist(p,q): dim = (p*q)**2 omega=Roots_Of_Unity(p) J=np.zeros((dim**2),dtype=complex) JI=np.zeros((dim**2),dtype=complex) for i,j in product(range(0,p),range(0,p)):#Corresponds to the element tau^i\ot sigma^j J[dim*i+j]=(1/p)*omega[(-i*j)%p] JI[dim*i+j]=(1/p)*omega[(i*j)%p] return [J,JI] def Bpq(p,q,r): G1=GeneralizedDihedralGroup(p,q,r,'a','sigma') G2=GeneralizedDihedralGroup(p,q,r,'b','tau') G=Tensor_Product(G1,G2) temp = Bpq_Twist(p,q) J=temp[0] JI=temp[1] return Drinfeld_Twist(G,J,JI,'J')
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,228
AdamJacoby/Hopf
refs/heads/master
/ElementClass.py
from HopfClass import * ########################################################################################################### #Creates a new class of objects as elements of vector spaces/algebras/modules/bialgebras/Hopf algebras #The primarry advantage to elements is that they can have names making them much easier to work with ############################################################################################################## #Creates the most basic element that of a vector space #It can be created either by entering the name associated to the algebra #or by entering in a proper size vector #names should be entered as sums of constant*elementname #Elements have three properties name,vector and space #All operations are inheartyed from the space class VectorSpaceElement(object): #Note to save time this function does not name an unnamed vector def __init__(self,vector,space): if type(vector) !=str: self.vector = vector elif vector == '0': self.vector = np.zeros((space.dim)) else: self.vector = np.zeros((space.dim),dtype=complex) temp = vector.split('+') for item in temp: element = item.split('*') for i in range(0,space.dim): if element[1] == space.element_names[i]: self.vector[i]=complex(element[0]) break self.space = space self.name = 'Currently unnamed.' #Constructs the tensor product of two elements #Note the tensor space must be defined for this to happen def Tensor(self,other): if self.space.type == 'HopfAlgebra' and other.space.type == 'HopfAlgebra': out_type = 'HopfAlgebra' elif self.space.type == 'Algebra' or other.space.type: out_type = 'Algebra' elif (self.space.type == 'ModuleAlgebra' or self.space.type == 'HopfAlgebra') and (other.space.type=='HopfALgebra' or other.space.type=='ModuleALgebra'): out_type = 'ModuleAlgebra' else: out_type = 'VectorSpace' out = np.zeros((self.space.dim*other.space.dim),dtype=complex) for i in range(0,self.space.dim): for j in range(0,other.space.dim): out[i*other.space.dim+j]=self.vector[i]*other.vector[j] return eval(out_type+'Element(out,AlgebraList[\''+self.space.name+'(T)'+other.space.name+'\'])') #Adds two elements def __add__(self,other): return eval(self.space.type+'Element(self.vector + other.vector,self.space)') #Subtracts two elements def __sub__(self,other): return eval(self.space.type+'Element(self.vector - other.vector,self.space)') #If the element does not have a name this function adds it def Name(self): if self.name == 'Currently unnamed.': self.name = '' for i in range(0,self.space.dim): if self.vector[i] != 0: self.name = self.name+'+'+str(self.vector[i])+'*'+self.space.element_names[i] if self.name == '': self.name = '0' return self.name else: return self.name #Adds two new functions to the vector space element class class AlgebraElement(VectorSpaceElement): #Defines the multiplication action multiplication comes from the space def __mul__(self,other): if type(other) == complex or type(other) == int or type(other) == float or type(other)==np.complex128: return eval(self.space.type+'Element(other*self.vector,self.space)') elif self.space==other.space: return eval(self.space.type+'Element(self.space.Mult(self.vector,other.vector),self.space)') elif other.space.type == 'Module': return ModuleAlgebraElement(other.space.Action(self.vector,other.vector),other.space) elif other.space.type == 'ModuleAlgebra': return ModuleAlgebraElement(other.space.Action(self.vector,other.vector),other.space) #Defines the expeniation action multiplication comes from the space def __pow__(self,other): out = self if other ==0: temp = np.zeros(self.vector.shape[0]) temp[0]=1 out = eval(self.space.type+'Element(temp,self.space)') else: for i in range(0,other-1): out = out*self return out #Element class for a coalgebra #Adds two functions onto a vector space element # class CoAlgebraElement(VectorSpaceElement): #Defines the comultiplication all structure comes from the space def CoMult(self): if self.space.type == 'CoAlgebra': return CoAlgebraElement(self.space.CoMult(self.vector),AlgebraList[self.space.name+'(T)'+self.space.name]) if self.space.type == 'HopfAlgebra': return HopfAlgebraElement(self.space.CoMult(self.vector),AlgebraList[self.space.name+'(T)'+self.space.name]) #Defines the counit all structure comes from the space #output is an element of the base field currently the complex numbers def CoUnit(self): return self.space.CoUnit(self.vector) #Has the functions of both an algebra element and a coalgebra element #Only new function is the antipode class HopfAlgebraElement(AlgebraElement,CoAlgebraElement): def Antipode(self): return HopfAlgebraElement(self.space.Antipode(self.vector),self.space) #Element of a module currentl uncomplete !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! class ModuleElement(VectorSpaceElement): def Act(self,ring_element): vector = self.space.Action(ring_element.vector,self.vector) return eval(self.space.type+'Element(vector,self.space)') #Element of a module algebra has all functions as that of a Module element and an algebra element #Also contains a function for the smash product of two elements #Note the smash product must exist for this to happen class ModuleAlgebraElement(ModuleElement,AlgebraElement): def Smash(self,other): vector = ProdVectorToTensorVector(self.vector,other.vector) return ModuleAlgebraElement(vector,AlgebraList[self.space.name+'#'+other.space.name])
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,229
AdamJacoby/Hopf
refs/heads/master
/Example_Symmetric_Group.py
from sympy.combinatorics.named_groups import SymmetricGroup from ExampleGroup_Functions import PermutationGroupInfo, MakeGroupAlgebra def Symmetric_Group(n): temp = PermutationGroupInfo(SymmetricGroup(n)) S = MakeGroupAlgebra('S_'+str(n),temp['element_names'],temp['mult'],temp['antipode']) return S
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,230
AdamJacoby/Hopf
refs/heads/master
/Frobenius_Tools.py
from itertools import product import scipy.sparse as sps import sympy as sp import numpy as np from HopfConstructions_Functions import Left_Action_Matrix, Right_Action_Matrix, CreateBasisVectors, Tensor_Mult from math import floor #Conversts s scipymatrix to sympy then converts the charicteristic poly in sympy and outputs it def CharPoly(M): temp = M.toarray() temp = sp.SparseMatrix(temp) return temp.berkowitz_charpoly() #Given a polynomial poly with list of roots, roots, computes the multiplicity of the roots using derivatives where Der is a partial list of derivatives def Multiplicity(poly,root,Der): D = Der #Start list of derivatives of poly i = 1 flag = 'go' while flag == 'go': if i<=(len(D)-1): if D[i].eval(root)!=0: multiplicity = i flag = 'stop' else: temp = D[-1].diff() D.append(temp) if temp.eval(root) != 0: multiplicity = i flag = 'stop' i = i+1 return [multiplicity,D] def Devisors(n):#Computes all divisors of n less then sqrt(n) out = [] for i in range(1,floor(n**.5)+1): if n%i==0: out.append(i) return out #Takes a polynomial and factors outt the zeros at 0 def Remove_Zeros_At_Zero(poly): mon = poly.EM() mon = mon.as_expr() return sp.exquo(poly,mon) #Computes the matrix corresponding to the higman trace: A\rightarrow A def HigmanTrace(A): dim = A.dim if A.casimir_flag == 'no': A.GetCasimir() mult = A.mult V = CreateBasisVectors(dim) casimir = A.casimir higman_trace = sps.csr_matrix((dim,dim)) for i,j in product(range(0,dim),range(0,dim)):#i,j corresponds to the baasis vector b^i\ot b^j if A.casimir[dim*i+j] !=0: higman_trace = higman_trace+Left_Action_Matrix(V[i],mult).dot(Right_Action_Matrix(V[j],mult)) return higman_trace #Given an algerbra A computes the mattrix corresponding to the left action of #the image of the casimir squared under the multiplication map def Compute_M(A): dim = A.dim if A.casimir_flag == 'no': A.GetCasimir() mult = A.mult casimir = A.casimir tensor_mult = Tensor_Mult(A,A) C = mult.dot(tensor_mult.dot(np.kron(A.casimir,A.casimir))) return Left_Action_Matrix(C,A.mult)
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,231
AdamJacoby/Hopf
refs/heads/master
/Example_Taft.py
from HopfClass import * import numpy as np from itertools import product import scipy.sparse as sps #Creates the name vector for the Taft algebra #g is the name of the group like #x is the name of the g,1 primitive element #basis is given by g^0x^0,g^2,...,g^1x^1,g^2x^1,...,g^{n-2}x^{n-1},g^{n-1}x^{n-1} def Taft_Element_Names(n,g,x): out=[] for i in range(0,n): for j in range(0,n): out.append(g+'^'+str(j)+x+'^'+str(i)) return out #Created the multiplication matrix for the taft algebra #Uses the same ordered basis that was used for element names def Taft_Mult(n): poly = [0]*(n+1) poly[0]=1 poly[n]=-1 #Omega is the lsit of roots of unity where omega[0] is the primitive one underconsideration in the definition omega=np.roots(poly) out = np.zeros((n**2,n**4),dtype=complex) N=range(0,n) for i, j, k in product(N,N,N):# the iteration i,j,l,k corresponds to the input g^ix^j\ot g^kx^l for l in range(0,n-j):#only loops up to n-j since if j+l>=n the product should be 0 out[((i+k)%n)+n*(j+l),i+n*j+(k+n*l)*n**2]=omega[(n-1)-(-j*k)%n] out = sps.csr_matrix(out.tolist(),dtype=complex) return out #Constructs the comultiplication matrix inductively perhaps latter will want to do it in a closed form!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! def Taft_Comult(n,mult): dim = n**2 out=np.zeros((dim**2,dim),dtype=complex) #compute list of powers of (x+g) between 0 and n-1 xplusg=np.zeros(dim) xplusg[1]=1 xplusg[n]=1 temp = np.zeros(dim) temp[0]=1 prods =[temp] N=range(1,n) for i in N: temp2 = np.kron(temp,xplusg) temp = mult.dot(temp2) prods.append(temp) N=range(0,n) for i, j in product(N,N):#i,j corresponds to g^ix^j for l in range(0,j+1): out[((i+l)%n)+(j-l)*n+(i+n*l)*dim,i+j*n]=prods[j][l+(j-l)*n] return out def Taft_Counit(n): out = np.zeros((n),dtype=complex) for i in range(0,n): out[i]=1 return out def Taft_Antipode(n): dim=n**2 poly = [0]*(n+1) N=range(0,n) poly[0]=1 out=np.zeros((dim,dim),dtype=complex) poly[n]=-1 omega=np.roots(poly) for i, j in product(N,N):#(i,j) corresponds to g^ix^j out[((-i)%n)+j*n]=(-1)**j*omega[(i*j)%n]#gives coefficent of g^{n-i}x^j out = sps.csr_matrix(out.tolist(),dtype=complex) return out ################################################################################################### #Code For testing only ######################################################################################################
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,232
AdamJacoby/Hopf
refs/heads/master
/HopfClass.py
# packages from HopfClass_Functions import * from scipy import linalg import scipy.sparse as sps import numpy as np import os import pickle ################################################################################################################## #Create the global variable storing algebras ################################################################################################################### global AlgebraList AlgebraList = {} ############################################################################################################################### #Create a class for algebras #The multiplication matrix should have the form of an n by n^2 matrix #corisponding to the multiplication matrix with lexiographical ordering on the tensor product ############################################################################################################################# #Creates a Class for vector spaces #For the addition and scalar multiplication action see the class VectorSpaceElement class VectorSpace(object): def __init__(self,name,element_names): #name of vector space self.name = name #List of the names of the elements in the vertor space self.element_names = element_names #A flag denoting the type of space self._type = 'VectorSpace' #The dimension of the vector space self.dim = len(element_names) #adds the object to the list of known objects global AlgebraList AlgebraList[self.name]=self #Saves the object to a location of your choice #if no location is given save to the current workign dirrectory def Save(self,*location): if len(location)==0: location = os.getcwd() else: location = location[0] temp_path = os.path.join(location, 'Save_'+self.name) temp_file = open(temp_path,'w+') pickle.dump(self,temp_file) temp_file.close() #Creates a class for an assocative algebra class Algebra(VectorSpace): def __init__(self,name,element_names,mult): self.name = name #The matrix that encodes the multiplication a dim by dim^2 matrix self.mult = mult self.dim = len(element_names) self.element_names = element_names self._type = 'Algebra' # a flag stating wether this algebra is Frobenius #I may replace this with a diffrent class all together????????????????????????????????????????????????????? self.casimir_flag = 'no' #A place to store the normalized regular character self.nrchar_flag = 'no' self.nrchar= None #A variable for the casimir element if known self.casimir = None global AlgebraList AlgebraList[self.name]=self #Uses the multiplication matrix to multiply two vectors def Mult(self,a,b): temp = np.kron(a,b) out = self.mult.dot(temp) return out #Computes the normalized regular character def GetNRChar(self): V = CreateBasisVectors(self.dim) self.nrchar = np.zeros((self.dim),dtype=complex) for i in range(0,self.dim): temp = 0 for j in range(0,self.dim): temp = temp + self.Mult(V[i],V[j])[j] self.nrchar[i] = temp / self.dim self.nrchar_flag = 'yes' #Uses linear algebra to get casimir element if we are dealing with a hopf algebra !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! def GetCasimir(self): V = CreateBasisVectors(self.dim) self.casimir = np.zeros((self.dim**2),dtype=complex) equations = np.zeros((self.dim,self.dim),dtype=complex) if self.nrchar_flag == 'no': self.GetNRChar() for i in range(0,self.dim): for j in range(0,self.dim): equations[i,j] = self.nrchar.dot(self.Mult(V[i],V[j])) for i in range(0,self.dim): solutions = np.zeros((self.dim),dtype=complex) solutions[i]=1 temp = linalg.solve(equations,solutions) self.casimir = self.casimir + np.kron(V[i],temp) def Input_Casimir(self,casimir): self.casimir=casimir self.casimir_flag = 'yes' ########################################################################################################################### #Defines the class of coalgebras comult should be a Dim by Dim^2 matrix with top as inputs and side as outputs #counit representes the counit map and shold be the vector of [\epsilon(T_1),\epsilon(T_2),...,\epsilon(T_{Dim})] ########################################################################################################################### class CoAlgebra(VectorSpace): def __init__(self,name,element_names,comult,counit): self.name = name #The variable that stores the comulttiplication matrix self.comult = comult self.dim = len(element_names) #stores the counit self.counit = counit self.element_names = element_names self._type = 'CoAlgebra' global AlgebraList AlgebraList[self.name]=self #Takes an element in vector form as input and outputs it image under the comultiplication #As always the tensor is expressed in terms of the lexiographical basis def CoMult(self,a): return self.comult.dot(a) #Takes an element in vector form as the input and outputs the counit evaulated at it #Result is an element of the base field def CoUnit(self,a): return self.counit.dot(a) ##################################################################################################### #Creates a Bialgebra class simple an Algebra and a coalgebra (NOTE: As of now compatibility conditions are NOT checked) ##################################################################################################### class BiAlgebra(CoAlgebra,Algebra): def __init__(self,name,element_names,mult,comult,counit): self.name = name self.mult = mult self.dim = len(element_names) self.comult = comult self.counit = counit self.element_names = element_names self._type = 'BiAlgebra' self.casimir_flag = 'no' self.nrcharflag = 'no' self.casimir=None self.nrchar = None global AlgebraList AlgebraList[self.name]=self ############################################################################################################# #A biablgebra plus an Antipode (Note the antipode axiomes are NOT checked) #the Antipode will be input as a Dim by Dim matrix corresponding to the antipode under the standard basis ################################################################################################################ class HopfAlgebra(BiAlgebra): def __init__(self,name,element_names,mult,comult,counit,antipode): self.name = name self.element_names = element_names self.mult = mult self.dim = len(element_names) self.comult = comult self.counit = counit self.antipode = antipode self.int_flag = 'no' self.casimir_flag = 'no' self.nrchar_glag = 'no' self.integral = None self.casimir = None self.nrchar = None self._type = 'HopfAlgebra' global AlgebraList AlgebraList[self.name]=self #Take an element expressed as a vector as an input and outputs the antipode evaluated at it def Antipode(self,a): return self.antipode.dot(a) #This code should eventually be expanded so that it computes it for you need to be careful goal is for this to be computed at creation #This should be input as a vector not a Hopf element need left and right integrals def Input_Integral(self,integral): self.integral = integral self.int_flag = 'yes' #Given the integral uses it to compute the Casimir element #This should eventually be done at creation but need to get integral code running first def GetCasimir(self): if self.int_flag == 'yes': temp = self.CoMult(self.integral) temp = TensorVectorToProdVector(temp,self,self) out = np.zeros((self.dim**2),dtype=complex) for item in temp: out = out + np.kron(item[0],self.Antipode(item[1])) self.casimir = out self.casimir_flag = 'yes' else: Algebra.GetCasimir(self) ################################################################################################################################## #Creates a module the action should be in the form of the matrix representing the action map from ring tensor module to module #interms of the standard basis ################################################################################################################################## class Module(VectorSpace): def __init__(self,name,element_names,ring,action): self.dim = len(element_names) #The ring that acts on it stored as a string self.ring = ring self.action = action self.elements_names self.name = name self._type = 'Module' global AlgebraList AlgebraList[self.name]=self #Given two vectors representing a ring element and module element respectively #outputs the vector corresponding to the ring element acting on the vector space element def Action(self,ring_vector,module_vector): return self.action.dot(np.kron(ring_vector,module_vector)) #Creates a class for a module algebra which is exactly just a module class and algebra class class ModuleAlgebra(Algebra,Module): def __init__(self,name,element_names,ring,action,mult): self.name = name self.mult = mult self.dim = len(element_names) self.element_names = element_names self.mult=mult self.action = action self.casimir_flag = 'no' self.nrchar_flag = 'no' self._type = 'ModuleAlgebra' self.casimir = None self.nrchar = None global AlgebraList AlgebraList[self.name]=self
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,233
AdamJacoby/Hopf
refs/heads/master
/Algebra_Tools.py
import sympy as sp import scipy.sparse as sps from HopfClass import * import numpy as np import sympy as sym from Frobenius_Tools import HigmanTrace from HopfConstructions_Functions import CreateBasisVectors #Given U the change of basis matrix twiost the structure matrixes to be wirth respect to the new basis #U(original basis element)=new basis element def ChangeBasis(A,U,UI): U = sps.csr_matrix(U.tolist()) UI= sps.csr_matrix(UI.tolist()) if 'Algebra' in A._type: mult = U.dot(A.mult.dot(sps.kron(UI,UI))) if 'Module' in A._type: ring_dim=self.ring.dim action = U.dot(A.action) ring_id = sps.Identity(ring_dim,format='csr') action = U.dot(action.dot(sps.kron(ring_id,UI))) if A._type=='HopfAlgebra' or A._type=='BiAlgebra' or A._type=='CoAlgebra': comult = sps.kron(U,U).dot(A.comult.dot(UI)) counit = A.counit.dot(UI) if A._type == 'Algebra': out = Algebra(A.name,A.element_names,mult) if A._type == 'CoAlgebra': out = CoAlgebra(A.name,A.element_names,comult,counit) if A._type == 'BiAlgebra': out = BiAlgebra(A.name,A.element_names,mult,comult,counit) if A._type == 'HopfAlgebra': antipode = U.dot(A.antipode.dot(UI)) out = HopfAlgebra(A.name,A.element_names,mult,comult,counit,antipode) if A.int_flag != 'no': A.Input_Integral(U.dot(A.Integral)) if A._type == 'Module': out = Module(A.name,A.element_names,A.ring,action) if A._type == 'ModuleAlgebra': out = ModuleAlgebra(A.name,A.element_names,A.ring,action,mult) if 'Algebra' in A._type and A.casimir_flag !='no': out.Input_Casimir(sps.kron(U,U).dot(A.casimir)) return out #Computes a basis for the center of A as well as a complementary basis def Center(A): dim = A.dim V_temp = CreateBasisVectors(dim) V=[] for vector in V_temp: V.append(vector.tolist()) higman_trace=HigmanTrace(A) higman_trace = sym.Matrix(higman_trace.toarray()) image = higman_trace.transpose().rref() image = image[0] rref_matrix = image.tolist() rref_matrix=filter(lambda a: a != [0]*dim, rref_matrix) center_dim = len(rref_matrix) change_of_basis = [] past_index = 0 complement = [] for vector in rref_matrix: current_index = vector.index(1) for i in range(past_index+1,current_index): complement.append(i) change_of_basis.append(vector) past_index=current_index for i in range(current_index+1,dim):#add the remaining basis vectors if not finished in previous step complement.append(i) for index in complement: change_of_basis.append(V[index]) U=np.transpose(np.array(change_of_basis,dtype=complex)) UI=np.linalg.inv(U) return [U,UI,center_dim]
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,234
AdamJacoby/Hopf
refs/heads/master
/Example_Matrix_Algebra.py
import numpy as np from scipy.sparse import csr_matrix from itertools import product from HopfClass import Algebra def MartixAlgebra_ElementNames(n): ele_names=[] for i in range(0,n): for j in range(0,n): ele_names.append('T_'+str(i)+','+str(j)) return ele_names def MatrixAlgebra_Mult_Matrix(n): dim=n**2 mult = np.zeros((dim,dim**2)) for i,j,k in product(range(0,n),range(0,n),range(0,n)): #Corresponds to the product T_i,jT_j,k mult[i*n+k,dim*(i*n+j)+n*j+k]=1 return csr_matrix(mult.tolist()) def MatrixAlgebra_Casimir(n): dim = n**2 casimir = np.zeros((dim**2)) for i,j in product(range(0,n),range(0,n)):#Coresponds to T_i,j\ot T_j,i casimir[dim*(n*i+j)+n*j+i]=n return casimir def MatrixAlgebra(n): M = Algebra('M_'+str(n),MartixAlgebra_ElementNames(n),MatrixAlgebra_Mult_Matrix(n)) M.Input_Casimir(MatrixAlgebra_Casimir(n)) return M
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,235
AdamJacoby/Hopf
refs/heads/master
/Example_DihedralGroup.py
from ExampleGroup_Functions import * from HopfClass import HopfAlgebra import numpy as np import scipy.sparse as sps from itertools import product #Cronstrust the dihedrqal group {g^n=1,x^2=1,gx=xg^{-1}} # g^ix^j corresponds to the basis vector with a 1 in position i*2+j def DihedralGroup_Mult_Matrix(n): dim = 2*n mult = np.zeros((dim,dim**2),dtype=complex) N=range(0,n) for i,j in product(N,[0,1]):#Corresponds to the element in the product g^ix^j for k,l in product(N,[0,1]):#Corresponds to the element in the product g^kx^l mult[2*((i+((-1)**j)*k)%n)+(j+l)%2,dim*(i*2+j)+2*k+l]=1 #Element corresponding to g^{i+(-1)^j*k}x^{k+l} as the output mult = sps.csr_matrix(mult.tolist(),dtype=complex) return mult #Constructts the antipode matrix for the dihedral group def DihedralGroup_Antipode(n): dim = 2*n antipode = np.zeros((dim,dim),dtype=complex) for i,j in product(range(0,n),[0,1]):#Corresponds to input of g^ix^j antipode[2*(((-1)**(j+1)*i)%n)+j,i*2+j]=1#Corresponds to output g^{(-1)^{j+1}i}x^j antipode = sps.csr_matrix(antipode.tolist(),dtype=complex) return antipode #Contructs the element name list were ele_name_g takes the role of g in discriptions above # and ele_name_x takes the role of x in discriptions above def DihedralGroup_Element_Names(n,ele_name_g,ele_name_x): out = [] for i in range(0,n):#corresponds to i in g^ix^j for j in [0,1]:#corresponds to j in g^ix^j out.append(ele_name_g+'^'+str(i)+ele_name_x+'^'+str(j))#Gives the name return out #Constructs the dihedral group {g^n=1,x^2=1,gx=xg^{-1}} where g is names ele_name_g and x is named ele_name_x def DihedralGroup(n,element_name_g,element_name_x): dim=2*n mult = DihedralGroup_Mult_Matrix(n) comult = Group_Comult_Matrix(dim) counit = Group_Counit(dim) int = Group_Integral(dim) antipode = DihedralGroup_Antipode(n) name = 'D_'+str(n) element_names = DihedralGroup_Element_Names(n,element_name_g,element_name_x) out = HopfAlgebra(name,element_names,mult,comult,counit,antipode) out.Input_Integral(int)#Sets the integral return out
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,236
AdamJacoby/Hopf
refs/heads/master
/Example_GeneralizedDihedralGroup.py
#Constructs the group algrebra of the group G={g,x|g^q=x^p=1,xg=g^rx} #p and q should be prime where p should divide q-1 and r should be an element of \ZZ_q of order p from ExampleGroup_Functions import * from HopfClass import HopfAlgebra import numpy as np import scipy.sparse as sps from itertools import product #Cronstrust the dihedrqal group {g^n=1,x^2=1,gx=xg^{-1}} # g^ix^j corresponds to the basis vector with a 1 in position n*i+j def GeneralizedDihedralGroup_Mult_Matrix(p,q,r): dim = p*q mult = np.zeros((dim,dim**2),dtype=complex) for i,j in product(range(0,q),range(0,p)):#Corresponds to the firstt element in the product g^ix^j for k,l in product(range(0,q),range(0,p)):#Corresponds to the firstt element in the product g^kx^l mult[p*((i+r*k)%q)+(k+l)%p,dim*(i*p+j)+p*k+l]=1 #Element corresponding to g^{i+r*k}x^{k+l} as the output mult = sps.csr_matrix(mult.tolist(),dtype=complex) return mult #Constructts the antipode matrix for the dihedral group def GeneralizedDihedralGroup_Antipode(p,q,r): dim = p*q antipode = np.zeros((dim,dim),dtype=complex) for i,j in product(range(0,q),range(0,p)):#Corresponds to input of g^ix^j inv=(((r**j)%q)**(q-2))%q#Compute r^j inverse mod q antipode[((-i*inv)%q)*p+((-j)%p),i*p+j]=1#Corresponds to output g^{(-1)^{j+1}i}x^(-j%p) antipode = sps.csr_matrix(antipode.tolist(),dtype=complex) return antipode #Contructs the element name list were ele_name_g takes the role of g in discriptions above # and ele_name_x takes the role of x in discriptions above def GeneralizedDihedralGroup_Element_Names(p,q,ele_name_g,ele_name_x): out = [] for i in range(0,q):#corresponds to i in g^ix^j for j in range(0,p):#corresponds to j in g^ix^j out.append(ele_name_g+'^'+str(i)+ele_name_x+'^'+str(j))#Gives the name return out #Constructs the dihedral group {g^n=1,x^2=1,gx=xg^{-1}} where g is names ele_name_g and x is named ele_name_x def GeneralizedDihedralGroup(p,q,r,element_name_g,element_name_x): dim=p*q mult = GeneralizedDihedralGroup_Mult_Matrix(p,q,r) comult = Group_Comult_Matrix(dim) counit = Group_Counit(dim) int = Group_Integral(dim) antipode = GeneralizedDihedralGroup_Antipode(p,q,r) name = 'B_'+str(p)+','+str(q)+','+str(r) element_names = GeneralizedDihedralGroup_Element_Names(p,q,element_name_g,element_name_x) out = HopfAlgebra(name,element_names,mult,comult,counit,antipode) out.Input_Integral(int)#Sets the integral return out
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,237
AdamJacoby/Hopf
refs/heads/master
/Frobenius_Divisibility_Algorithm.py
import sympy as sp import numpy as np import scipy.sparse as sps import scipy.sparse.linalg as sps_linalg from HopfConstructions_Functions import Tensor_Mult, Left_Action_Matrix from math import floor from Frobenius_Tools import * from Algebra_Tools import Center #Computes the matrix for the image of the casimir squared under the multiplication map acting on the center def Comupute_Central_M(A): M = np.array(Compute_M(A).toarray()) temp = Center(A) U = temp[0] center_dim = temp[2] UI = temp[1] M=UI.dot(M.dot(U)) M = np.array(M.tolist()) M = M[0:center_dim,0:center_dim] print M.shape return M def Check_FD(A): dim = A.dim if A.casimir_flag == 'no': A.GetCasimir() mult = A.mult casimir = A.casimir tensor_mult = Tensor_Mult(A,A) C = mult.dot(tensor_mult.dot(np.kron(A.casimir,A.casimir))) C = AlgebraElement(C,A) temp = C**2-((dim**2)/1)*C for d in divisors[1:]: temp = temp*C**2-((dim**2)/d)*C zeros = np.zeros(dim) if temp.vector==zeros: print 'Yes FD' else: print 'No FD' def Degree_Of_Irreps_Char(A): dim = A.dim number_of_irreps = [] sizes_of_irreps = [] M = Compute_M(A)#Compute the matrix corresponding to tthe left action by C poly = CharPoly(M) Der = [poly] d = dim bound = floor(dim**.5) i=1 while i <= bound: root_to_test = dim**2/i**2 if poly.eval(root_to_test) == 0: sizes_of_irreps.append(i) temp = Multiplicity(poly,root_to_test,Der) number_of_irreps.append(temp[0]/i**2) d = d - temp[0] Der = temp[1] bound = floor(d**.5) i = i+1 return [sizes_of_irreps,number_of_irreps] def Degree_Of_Irreps_Higchar(A): mult = A.mult dim = A.dim number_of_irreps = [] sizes_of_irreps = [] M = Compute_M(C)#Compute the matrix corresponding to tthe left action by C higman_trace = HigmanTrace(A)/dim M = M.dot(higman_trace) poly = CharPoly(M) poly = Remove_Zeros_At_Zero(poly) print poly Der = [poly] d = dim bound = floor(dim**.5) i=1 while i <= bound: root_to_test = dim**2/i**2 if poly.eval(root_to_test) == 0: sizes_of_irreps.append(i) temp = Multiplicity(poly,root_to_test,Der) number_of_irreps.append(temp[0]) d = d - temp[0] Der = temp[1] bound = floor(d**.5) i = i+1 return [sizes_of_irreps,number_of_irreps] #Uses a straight determinant computation def Degree_Of_Irreps_Det(A): dim = A.dim sizes_of_irreps = [] M=Compute_M(A)#Compute the matrix corresponding to tthe left action by C M=np.array(M.toarray()) d = dim float_dim = float(dim) bound = floor(dim**.5) root_dim = bound i=1 while i <= bound: n = float(i) value_to_test = float_dim**2/n**2 if i == root_dim: error = ((float_dim**2*(2*n-1)/(n**2*(n-1)**2))**float_dim)/2 else: error = ((float_dim**2*(2*n+1)/(n**2*(n+1)**2))**float_dim)/2 if np.linalg.det(M-value_to_test*np.identity(dim)) < error: sizes_of_irreps.append(i) d = d-i**2 bound = floor(d**.5) i = i+1 return sizes_of_irreps #Uses scipy Eigen value solver def Degree_Of_Irreps_Eig(A): dim = A.dim M = Compute_M(A)#Compute the matrix corresponding to tthe left action by C M=np.array(M.toarray())#COnvert to a nonsparse numpy array temp =np.round(np.sqrt(dim**2/np.real(np.linalg.eigvals(M)))).tolist() Eigen_Vals = sorted(list(set(temp))) Multiplicities = [] for Val in Eigen_Vals: Multiplicities.append(temp.count(Val)/Val**2) print 'The diminsions of the irreps'+str(Eigen_Vals) print 'With Corresponding Multiplicities'+str(Multiplicities) def Degree_Of_Irreps_Center(A): dim = A.dim M = Comupute_Central_M(A) temp =np.round(np.sqrt(dim**2/np.real(np.linalg.eigvals(M)))).tolist() Eigen_Vals = sorted(list(set(temp))) Multiplicities = [] for Val in Eigen_Vals: Multiplicities.append(temp.count(Val)) print 'The diminsions of the irreps'+str(Eigen_Vals) print 'With Corresponding Multiplicities'+str(Multiplicities)
{"/Example_CyclicGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/HopfConstructions.py": ["/HopfConstructions_Functions.py", "/HopfClass.py", "/Frobenius_Tools.py"], "/ExampleGroup_Functions.py": ["/HopfClass.py"], "/Example_Bpq.py": ["/HopfClass.py", "/HopfConstructions.py", "/Example_GeneralizedDihedralGroup.py"], "/ElementClass.py": ["/HopfClass.py"], "/Example_Symmetric_Group.py": ["/ExampleGroup_Functions.py"], "/Frobenius_Tools.py": ["/HopfConstructions_Functions.py"], "/Example_Taft.py": ["/HopfClass.py"], "/Algebra_Tools.py": ["/HopfClass.py", "/Frobenius_Tools.py", "/HopfConstructions_Functions.py"], "/Example_Matrix_Algebra.py": ["/HopfClass.py"], "/Example_DihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"], "/Example_GeneralizedDihedralGroup.py": ["/ExampleGroup_Functions.py", "/HopfClass.py"]}
59,238
sureshsaravananbabu/cpu
refs/heads/master
/Home/views.py
from django.shortcuts import render from django.views import View from django.http import HttpResponse import psutil sendmail=0 class Home(View): template_name = 'Home.html' def get(self, request, *args, **kwargs): print("hello") return render(request, self.template_name) def emailfield(request): global sendmail sendmail = request.POST['email'] return HttpResponse('THANK YOU') def return_email(): return sendmail
{"/Home/data.py": ["/Home/views.py"]}
59,239
sureshsaravananbabu/cpu
refs/heads/master
/Home/data.py
import asyncio from channels.generic.websocket import AsyncJsonWebsocketConsumer from django.conf import settings from .views import return_email from django.core.mail import send_mail import psutil import json class SendData(AsyncJsonWebsocketConsumer): async def connect(self): await self.accept() flag=list() while True: await asyncio.sleep(1) vcpu=psutil.cpu_percent() rp=psutil.virtual_memory().percent a=return_email() if(rp>50): flag.append(1) else: flag.clear() if(rp>50 and len(flag)==10): print("send") subject = 'NOTIFICATION regarding RAM USAGE' message = 'your RAM utilisation is more than 50%' email_from = settings.EMAIL_HOST_USER recipient_list = [a] send_mail( subject, message, email_from ,recipient_list ) flag.clear() await self.send(text_data=json.dumps({'cpu':vcpu,'ram':rp})) async def receive(self, event): print("hellooooo") print("receive", event) async def disconnect(self, event): print("disconnected", event)
{"/Home/data.py": ["/Home/views.py"]}
59,240
sureshsaravananbabu/cpu
refs/heads/master
/cpu/routing.py
from channels.routing import ProtocolTypeRouter,URLRouter from channels.auth import AuthMiddlewareStack from Home import data from django.urls import path,include websocket_urlPattern=[ path('ws/cpu/',data.SendData), ] application=ProtocolTypeRouter({ "websocket": AuthMiddlewareStack(URLRouter(websocket_urlPattern)) })
{"/Home/data.py": ["/Home/views.py"]}
59,311
MareShae/BattleSnake
refs/heads/main
/Agent.py
from tAssist import * from VEnv import VEnv Main = 'genome.txt' Genome = ReadGenome(Main) class Agent: def __init__(self, name, envShape, body): # AGENT DETAILS self.Name = name self.width, self.height = envShape self.body, self.head = body, body[0] self.Network = NeuralNetwork(Genome) # self.hypotenuse = Divide(Add(envShape), math.sqrt(2)) # Longest possible distance # ACTIVITY DETAILS self.orientation = [-1, 0] self.stamina, self.holdStamina = 1, 1 self.angles = [0, 15, 30, 45, 60, 75, 90, 105, 120, 135, 150, -150, -135, -120, -105, -90, -75, -60, -45, -30, -15] # Octagon # MEMORY self.Snake = {self.Name: -0.20000} self.Food, self.Boundary = -0.1, -0.3 def Update(self, body, stamina): self.stamina = stamina self.body, self.head = body, body[0] def CheckBoard(self, YXAbs, Board): Food, Snakes = Board['food'], Board['snakes'] if YXAbs in Food: return self.Food for name in Snakes: if YXAbs in Snakes[name]: return self.Snake[name] return None def Move(self, Board: dict) -> str: # NETWORK: NeuralInput = self.See(Board) + [self.stamina, self.holdStamina] self.Network.ForwardPass(NeuralInput) # STAMINA: self.holdStamina = self.stamina # MOVEMENTS: confidence = RoundList(self.Network.ReadOutput()) if confidence == [0, 1]: self.orientation = RoundList(RotMat(90, self.orientation)) # ClockWise: 90 deg elif confidence == [1, 0]: self.orientation = RoundList(RotMat(-90, self.orientation)) # ClockWise: -90 deg if self.orientation == [1, 0]: return 'up' # Forward/Repeat: 0 deg elif self.orientation == [0, 1]: return 'right' # ClockWise: 90 deg elif self.orientation == [0, -1]: return 'left' # ClockWise: -90 deg elif self.orientation == [-1, 0]: return 'down' # ClockWise: 180 deg return response def See(self, Board: dict) -> list: # Searches VEnvironment for: vFeat, vDist = [], [] # Features and Their distance YPov, XPov = self.head for theta in self.angles: y, x = YPov, XPov # ... route = RotMat(theta, self.orientation) # ... y, x = Add([y, route[0]]), Add([x, route[1]]) # ... YAbs, XAbs = Round(y), Round(x) # Look in 21 directions while True: dist = abs(YPov - YAbs) + abs(XAbs - XPov) if not 0 <= YAbs < self.height or not 0 <= XAbs < self.width: vDist.append(Divide(dist, self.hypotenuse)) vFeat.append(self.Boundary) break tile = self.CheckBoard([YAbs, XAbs], Board) if tile: vDist.append(Divide(dist, self.hypotenuse)) vFeat.append(tile) break y, x = Add([y, route[0]]), Add([x, route[1]]) # ... YAbs, XAbs = Round(y), Round(x) # and Keep looking return vFeat + vDist
{"/Agent.py": ["/tAssist.py", "/VEnv.py"], "/server.py": ["/tAssist.py", "/VEnv.py", "/Agent.py"], "/VEnv.py": ["/tAssist.py"], "/tAssist.py": ["/NeuralFunctions.py", "/NeuralEvolution.py"], "/NeuralEvolution.py": ["/NeuralFunctions.py"]}
59,312
MareShae/BattleSnake
refs/heads/main
/server.py
# MAIN import os import json import bottle from bottle import HTTPResponse # SUB from tAssist import * from VEnv import VEnv from Agent import Agent Name = 'Jinx' Author = 'MareShae' SnakeAgent = None LogFile = 'Log.txt' def DList2List(DList: list): List = [] for Dict in DList: List += [[Dict['y'], Dict['x']]] return List # # # # # # # # # MAIN-PROCESS # # # # # # # # # # # # # # # # # # # # # @bottle.route("/") def index(): return "New Game. WHO DIS!?" @bottle.get("/") def ping(): """ Used by the BattleSnake Engine to make sure your snake is still working. """ response = {"apiversion": '1', "version": '7', "head": 'evil', "tail": 'bwc-flake', "author": Author, "color": '#736CCB'} return HTTPResponse(status=200, body=json.dumps(response), headers={"Content-Type": "application/json"}) @bottle.post("/start") def start(): global SnakeAgent """ Called every time a new BattleSnake game starts and your snake is in it. Your response will control how your snake is displayed on the board. """ # START START = bottle.request.json # Create Agent Board = START['board'] Body = DList2List(START['you']['body']) Shape = (Board['height'], Board['width']) SnakeAgent = Agent(Name, Shape, Body) # Snake Vision for snake in Board['snakes']: if snake['name'] != SnakeAgent.Name: SnakeAgent.Snake[snake['name']] = Random(-0.2, -0.29) # Print print('START:', START['game']['id'], '\n', 'Number of Snakes: ', len(Board['snakes'])) return HTTPResponse(status=200) @bottle.post("/move") def move(): """ Called when the BattleSnake Engine needs to know your next move. The data parameter will contain information about the board. Your response must include your move of up, down, left, or right. """ # MOVE MOVE = bottle.request.json # print("MOVE:", MOVE) # Parameters Snakes = {} Board = MOVE['board'] Food = DList2List(Board['food']) for snake in Board['snakes']: Snakes[snake['name']] = DList2List(snake['body']) # Update Snake: SnakeAgent.Update(DList2List(MOVE['you']['body']), Divide(MOVE['you']['health'], 100)) # Move Tiles = {'food': Food, 'snakes': Snakes} Move = SnakeAgent.Move(Tiles) # Shouts are not displayed on the game board. # Shouts are messages sent to all the other snakes in the game. SHOUT = ["Sk Sk Sk!"] RESPONSE = {"move": Move, "shout": Choice(SHOUT)} # DUMPGlobal() # Convert to JSON # RETURN RESPONSE return HTTPResponse(status=200, body=json.dumps(RESPONSE), headers={"Content-Type": "application/json"}) @bottle.post("/end") def end(): """ Called every time a game with your snake in it ends. """ END = bottle.request.json print('END: ', END['game']['id'], '\n', 'Turn: ', END['turn'], '\n', 'Health: ', END['you']['health'], '\n', 'Snakes Left: ', len(END['board']['snakes'])) return HTTPResponse(status=200) def main(): bottle.run( application, host=os.getenv("IP", "0.0.0.0"), port=os.getenv("PORT", "8080"), debug=os.getenv("DEBUG", True), ) # Expose WSGI app (so gunicorn can find it) application = bottle.default_app() if __name__ == "__main__": main()
{"/Agent.py": ["/tAssist.py", "/VEnv.py"], "/server.py": ["/tAssist.py", "/VEnv.py", "/Agent.py"], "/VEnv.py": ["/tAssist.py"], "/tAssist.py": ["/NeuralFunctions.py", "/NeuralEvolution.py"], "/NeuralEvolution.py": ["/NeuralFunctions.py"]}
59,313
MareShae/BattleSnake
refs/heads/main
/VEnv.py
from tAssist import * class VEnv: def __init__(self, shape): # BOARD INFO self.envRecord = [] # Record the state of the environment self.width, self.height = shape # Size of the environment self.env = numpy.zeros(shape=[self.height, self.width]) # Constructing the environment self.hypotenuse = Divide(self.width + self.height, math.sqrt(2)) # Longest possible distance # BOARD POINTS self.empty = [] # The empty tiles self.turns, self.score = 0, 0 for y in range(self.height): for x in range(self.width): self.empty.append((y, x)) self.food = [] # Where food is spawned def show(self): print(self.env) def record(self): self.envRecord += [self.env] def reset(self): self.turns = 0 self.score = 0 self.empty = [] # The empty tiles for y in range(self.height): for x in range(self.width): self.empty.append((y, x)) self.food = [] # Where food is spawned self.envRecord = [] # Record the state of the environment self.env = numpy.zeros(shape=[self.height, self.width]) # Constructing the environment def spawnFood(self): for _ in range(FoodLimit - len(self.food)): tile = Choice(self.empty) self.env[tile] = Food self.food.append(tile) self.empty.remove(tile) def resetTile(self, tile): if self.env[tile] == Food: self.food.remove(tile) self.env[tile] = Empty self.empty.append(tile) def setTile(self, tile, feature): if tile in self.empty: self.empty.remove(tile) self.env[tile] = feature
{"/Agent.py": ["/tAssist.py", "/VEnv.py"], "/server.py": ["/tAssist.py", "/VEnv.py", "/Agent.py"], "/VEnv.py": ["/tAssist.py"], "/tAssist.py": ["/NeuralFunctions.py", "/NeuralEvolution.py"], "/NeuralEvolution.py": ["/NeuralFunctions.py"]}
59,314
MareShae/BattleSnake
refs/heads/main
/tAssist.py
import cv2 import json import math import time from NeuralFunctions import * from NeuralEvolution import NeuralNetwork # ANGLES def Sin(val): val = math.radians(val) return Decimal(math.sin(val)) def Cos(val): val = math.radians(val) return Decimal(math.cos(val)) def RotMat(theta, mat): cosO = Cos(theta) sinO = Sin(theta) return MatMul([[cosO, sinO], [-sinO, cosO]], mat) def Divide(y, x): try: return Decimal(y / x) except ZeroDivisionError: return 1 # READING & WRITING def Append2File(filename, detail): file = open(filename, 'a') file.writelines(json.dumps(detail) + NextLine) file.close() def OpenFromFile(file_): file = open(file_, 'r') return json.loads(file.readline()) def SaveToFile(file_, data): file = open(file_, 'w') file.write(json.dumps(data)) file.close() def ReadGenomeFile(name): file = open(name, 'r') genomePool = json.loads(file.readline()) file.close() cont = [] for ev in genomePool: cont += [PythonJSONDumps(ev)] return cont def ReadGenome(name): file = open(name, 'r') cont = file.readline() file.close() cont = json.loads(cont) return PythonJSONDumps(cont)
{"/Agent.py": ["/tAssist.py", "/VEnv.py"], "/server.py": ["/tAssist.py", "/VEnv.py", "/Agent.py"], "/VEnv.py": ["/tAssist.py"], "/tAssist.py": ["/NeuralFunctions.py", "/NeuralEvolution.py"], "/NeuralEvolution.py": ["/NeuralFunctions.py"]}