index int64 | repo_name string | branch_name string | path string | content string | import_graph string |
|---|---|---|---|---|---|
94,075 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/PhoPositionalData/plotting/placefield.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
@author: pho
NOTE: This is a GOOD, general class that offers both 2D (matplot) and 3D (pyvista) functionality
"""
from indexed import IndexedOrderedDict
import sys
import pyvista as pv
import pyvistaqt as pvqt
import numpy as np
import pandas as pd
from pathlib impor... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,076 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Model/SpecificComputationValidation.py | from attrs import define, Factory, fields
from typing import Callable
@define(slots=False, repr=False)
class SpecificComputationValidator:
""" This encapsulates the logic for testing if a computation already complete or needs to be completed, and calling the compute function if needed.
Usage:
from pyphop... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,077 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/DockPlanningHelperWidget/Uic_AUTOGEN_DockPlanningHelperWidget.py | # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\PyQtPlot\Widgets\DockPlanningHelperWidget\DockPlanningHelperWidget.ui'
#
# Created by: PyQt5 UI code generator 5.15.7
#
# WARNING: Any manual changes made to this file ... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,078 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Mixins/ExportHelpers.py | from copy import deepcopy
from datetime import datetime
from enum import Enum # for getting the current date to set the ouptut folder name
from pathlib import Path
from typing import Any, Callable, List, Optional, Union, Dict
import pandas as pd
import numpy as np
from attrs import define, field, Factory, fields
from ... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,079 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Mixins/DataSeriesColorHelpers.py | from typing import OrderedDict, Union
from copy import deepcopy
import numpy as np
import pandas as pd
from neuropy.utils.mixins.enum_helpers import StringLiteralComparableEnum
from pyphocorehelpers.programming_helpers import metadata_attributes
from pyphocorehelpers.function_helpers import function_attributes
import p... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,080 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyVista/InteractivePlotter/InteractiveDataExplorerBase.py | # InteractivePyvistaPlotterBuildIfNeededMixin
# from neuropy
import numpy as np
import pyvista as pv
from qtpy import QtCore, QtGui, QtWidgets
from pyphocorehelpers.DataStructure.general_parameter_containers import DebugHelper, VisualizationParameters, RenderPlotsData, RenderPlots
from pyphocorehelpers.gui.PhoUIConta... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,081 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/MainApplicationWindows/PhoPipelineMainWindow/pyqtplot_MainWindow.py | # from PyQt6 import QtWidgets, uic
from typing import OrderedDict
from PyQt5 import QtWidgets, uic
from pyphoplacecellanalysis.External.pyqtgraph.flowchart import Flowchart, Node
import pyphoplacecellanalysis.External.pyqtgraph.flowchart.library as fclib
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtGui, ... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,082 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/Mixins/RenderTimeEpochs/Render2DEventRectanglesHelper.py | """ Render2DEventRectanglesHelper and Render2DEventRectanglesMixin
"""
from copy import deepcopy
import numpy as np
import pandas as pd
from neuropy.core import Epoch
import pyphoplacecellanalysis.External.pyqtgraph as pg
# from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui, QtWidgets
from pyphop... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,083 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Mixins/DisplayHelpers.py | import matplotlib.pyplot as plt
import numpy as np
from pyphocorehelpers.programming_helpers import metadata_attributes
from pyphocorehelpers.function_helpers import function_attributes
from pyphocorehelpers.print_helpers import WrappingMessagePrinter
from pyphocorehelpers.plotting.mixins.figure_param_text_box import ... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,084 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/breeze_style_sheets/example/slider.py | #!/usr/bin/env python
#
# The MIT License (MIT)
#
# Copyright (c) <2022-Present> <Alex Huszagh>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the 'Software'), to deal
# in the Software without restriction, including without limita... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,085 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho2D/PyQtPlots/TimeSynchronizedPlotters/Mixins/helpers.py | import pyphoplacecellanalysis.External.pyqtgraph as pg
# ==================================================================================================================== #
# 🔜👁️🗨️ Merging TimeSynchronized Plotters: #
# ===================... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,086 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Params/MatFileBrowser/MatFileBrowser.py | import numpy as np
import pandas as pd
from pathlib import Path
import h5py
import hdf5storage # conda install hdf5storage
from pyphoplacecellanalysis.PhoPositionalData.load_exported import import_mat_file
import scipy.io # used for not HDF format files:
from warnings import warn
import pyphoplacecellanalysis.Exte... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,087 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Batch/AcrossSessionResults.py | """
Concerned with aggregating data (raw and computed results) across multiple sessions.
Previously (Pre 2023-07-31) everything was designed in terms of a single session: the entire `NeuropyPipeline` object represents a single recording session - although it might slice this session several different ways and pro... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,088 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/Mixins/TimeCurves/RenderTimeCurvesMixin.py | import pyphoplacecellanalysis
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui, QtWidgets
import pyphoplacecellanalysis.External.pyqtgraph.opengl as gl # for 3D raster plot
import numpy as np
import pandas as pd
from pyphocorehelpers.general... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,089 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho3D/PyVista/spikeAndPositions.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
@author: pho
TODO: REORGANIZE_PLOTTER_SCRIPTS: PyVista
## Seems to primarily be a PyVista (pv) helper functions file
"""
import sys
from warnings import warn
import pyvista as pv
import numpy as np
import pandas as pd
# Fixed Geometry objects:
animal_location_s... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,090 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/GLGraphicsItems/RegionWindowVisualOverview.py | import dataclasses
from typing import Optional
import sys
import numpy as np
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui, QtWidgets
@dataclasses.dataclass
class AddRegionWidget(pg.GraphicsLayoutWidget):
""" A widget that allows one... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,091 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/PhoPositionalData/plotting/laps.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
@author: pho
"""
from itertools import islice # for Pagination class
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.collections import LineCollection, BrokenBarHCollection
from matplotlib.colors import ListedColormap, BoundaryNorm
import pyvista as ... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,092 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho2D/PyQtPlots/Extensions/pyqtgraph_helpers.py | from enum import Enum
from pathlib import Path
import numpy as np
from pyphocorehelpers.function_helpers import function_attributes
from pyphocorehelpers.DataStructure.general_parameter_containers import VisualizationParameters, RenderPlotsData, RenderPlots
from pyphocorehelpers.gui.PhoUIContainer import PhoUIContaine... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,093 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/BinnedImageRenderingWindow.py | import numpy as np
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtWidgets, mkQApp, QtGui
from pyphoplacecellanalysis.External.pyqtgraph.colormap import ColorMap
from pyphoplacecellanalysis.External.pyqtgraph.graphicsItems.GradientEditorItem import Gradi... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,094 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho2D/PyQtPlots/TimeSynchronizedPlotters/TimeSynchronizedPositionDecoderPlotter.py | import numpy as np
import pandas as pd
from qtpy import QtCore, QtWidgets
# from neuropy.analyses.time_dependent_placefields import PfND_TimeDependent
import pyphoplacecellanalysis.External.pyqtgraph as pg
# from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui
from pyphocorehelpers.DataStructure.gen... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,095 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/breeze_style_sheets/example/advanced-dock.py | #!/usr/bin/env python
#
# The MIT License (MIT)
#
# Copyright (c) <2021-Present> <Alex Huszagh>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the 'Software'), to deal
# in the Software without restriction, including without limita... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,096 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Batch/PhoDiba2023Paper.py | from copy import deepcopy
from typing import Dict, Callable
from attrs import define, field
import numpy as np
import pandas as pd
import matplotlib as mpl
import matplotlib.patches as mpatches # used for plot_epoch_track_assignments
from flexitext import flexitext ## flexitext version
from pyphoplacecellanalysis.Gen... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,097 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/NeuropyPipeline.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
@author: pho
NeuropyPipeline.py
"""
from copy import deepcopy
import importlib
import sys
from pathlib import Path
import shutil # for _backup_extant_file(...)
from typing import Callable, List, Optional, Dict
import inspect # used for filter_sessions(...... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,098 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyVista/InteractivePlotter/Mixins/InteractivePlotterMixins.py | import numpy as np
import pyvista as pv
from pyvista.plotting.plotting import Plotter
# from pyvista.core.composite import MultiBlock
from pyvistaqt import BackgroundPlotter
from pyvistaqt.plotting import MultiPlotter
from pyphoplacecellanalysis.Pho3D.PyVista.spikeAndPositions import point_location_circle, point_loca... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,099 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Mixins/TimeWindowPlaybackMixin.py | """ TimeWindowPlaybackMixin
Extends a TimeWindow to support realtime playback capabilities.
"""
import time
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui, QtWidgets
class TimeWindowPlaybackPropertiesMixin:
""" TimeWindowPlaybackPropertiesMixin: Properties that implementors that want to ... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,100 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyVista/InteractivePlotter/__init__.py | # from InterfaceProperties import InterfaceProperties
# from PhoInteractivePlotter import PhoInteractivePlotter
| {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,101 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Mixins/PipelineOwningMixin.py |
class PipelineOwningMixin:
""" Implementors own a pipeline or have access through a parent
"""
@property
def owning_pipeline(self):
"""The owning_pipeline property."""
if hasattr(self, '_owning_pipeline') and (self._owning_pipeline is not None):
return self._owning_pipeline... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,102 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Windows/MainPipelineWindow.py | # MainPipelineWindow.py
# Generated from c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\PyQtPlot\MainPipelineWindow.ui automatically by PhoPyQtClassGenerator VSCode Extension
import sys
from datetime import datetime, timezone, timedelta
import numpy as np
from enum import Enum
from PyQt5 impo... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,103 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Widgets/FloatingTreeWidget/FloatingTreeWidget.py | # FloatingTreeWidget.py
# Generated from c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\Qt\Widgets\FloatingTreeWidget\FloatingTreeWidget.ui automatically by PhoPyQtClassGenerator VSCode Extension
import sys
import os
from PyQt5 import QtGui, QtWidgets, uic
from PyQt5.QtWidgets import QMessage... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,104 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/GraphicsObjects/CustomIntervalRectsItem.py | """
Demonstrate creation of a custom graphic (a candlestick plot)
"""
import copy
import numpy as np
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph import QtCore, QtGui, QtWidgets
from pyphoplacecellanalysis.GUI.PyQtPlot.Widgets.helpers import RectangleRenderTuple... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,105 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/SpikeRasterWidgets/Spike3DRaster_Vedo.py | from io import StringIO
import time
import sys
from copy import deepcopy
import numpy as np
import pandas as pd
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui, QtWidgets # pyqtgraph is only currently used for its Qt imports
from vtk.qt.QVT... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,106 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Menus/PhoMenuHelper.py | import re # regular expression for PhoMenuHelper
from benedict import benedict
from qtpy import QtCore, QtGui, QtWidgets
from pyphocorehelpers.DataStructure.dynamic_parameters import DynamicParameters # for initialize_global_menu_ui_variables_if_needed
from pyphocorehelpers.gui.PhoUIContainer import PhoUIContainer
from... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,107 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/pyqtgraph/examples/VideoTemplate_pyside2.py |
################################################################################
## Form generated from reading UI file 'VideoTemplate.ui'
##
## Created by: Qt User Interface Compiler version 5.15.2
##
## WARNING! All changes made in this file will be lost when recompiling UI file!
####################################... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,108 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho2D/matplotlib/CustomMatplotlibWidget.py | from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolbar
from matplotlib.figure import Figure
import pyphoplacecellanalysis.External.pyqtgraph as pg
from qtpy import QtCore, QtWidgets, QtGui
from pyphocore... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,109 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /scripts/batch_run.py | from pyphoplacecellanalysis.General.Batch.runBatch import main, BatchRun
if __name__ == "__main__":
main()
| {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,110 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Model/Datasources/IntervalDatasource.py | from copy import copy, deepcopy
import numpy as np
import pandas as pd
from neuropy.core import Epoch
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore
from pyphoplacecellanalysis.General.Model.Datasources.Datasources import BaseDatasource, DataframeDatasource
import pyphoplacecellanalysis.External.pyq... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,111 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyVista/InteractivePlotter/PhoInteractivePlotter.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
@author: pho
A class wrapper for PyVista's plotter class used to simplify adding interactive playback elements (animations) and storing common state for the purpose of 3D plotting.
"""
import pyvista as pv
from pyvistaqt import BackgroundPlotter
from pyphoplacecellan... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,112 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/Stages/ComputationFunctions/ComputationFunctionRegistryHolder.py | from pyphocorehelpers.mixins.auto_registering import RegistryHolder
from typing import Dict
class ComputationFunctionRegistryHolder(RegistryHolder):
REGISTRY: Dict[str, "ComputationFunctionRegistryHolder"] = {}
@classmethod
def get_registry(cls):
""" ensures that registry items are returned so... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,113 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/PhoPositionalData/plotting/visualization_window.py | import numpy as np
import pandas as pd
from dataclasses import dataclass
@dataclass
class VisualizationWindow(object):
"""
Used in:
InteractivePlaceCellDataExplorer: to hold the fixed-duration time windows for each path
Usage:
## Simplified with just two windows:
self.params.... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,114 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/PlacefieldVisualSelectionControlsBar/Uic_AUTOGEN_PlacefieldVisualSelectionControlsBarWidgetBase.py | # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\Qt\PlacefieldVisualSelectionControlsBar\PlacefieldVisualSelectionControlsBarWidgetBase.ui'
#
# Created by: PyQt5 UI code generator 5.15.7
#
# WARNING: Any manual change... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,115 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/pyqtgraph/examples/PColorMeshItem.py | """
Demonstrates very basic use of PColorMeshItem
"""
import time
import numpy as np
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore
app = pg.mkQApp("PColorMesh Example")
## Create window with GraphicsView widget
win = pg.GraphicsLayoutWidget()... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,116 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /tests/test_custom_pyqt_placefield_visibility_control.py | """
This example demonstrates the use of ColorBarItem, which displays a simple interactive color bar.
"""
import numpy as np
import pyqtgraph as pg
from pyqtgraph.Qt import QtCore, QtGui, QtWidgets, mkQApp
from pyphocorehelpers.gui.PhoUIContainer import PhoUIContainer
from pyphoplacecellanalysis.GUI.Qt.PlacefieldVi... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,117 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/Stages/ComputationFunctions/MultiContextComputationFunctions/MultiContextComputationFunctions.py | import numpy as np
import pandas as pd
from functools import wraps
from pyphocorehelpers.mixins.member_enumerating import AllFunctionEnumeratingMixin
from pyphocorehelpers.function_helpers import function_attributes
from pyphoplacecellanalysis.General.Pipeline.Stages.ComputationFunctions.ComputationFunctionRegistryHol... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,118 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho3D/__init__.py | from .points import interlieve_points, lines_from_points
from .spikes import draw_line_spike
| {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,119 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Menus/GlobalApplicationMenusMainWindow/GlobalApplicationMenusMainWindow.py | # GlobalApplicationMenusMainWindow.py
# Generated from c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\Qt\GlobalApplicationMenus\GlobalApplicationMenusMainWindow.ui automatically by PhoPyQtClassGenerator VSCode Extension
import os
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyph... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,120 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Flowchart/CustomNodes/DisplayNodes/PipelineDisplayNode.py | import sys
import importlib
from pyphoplacecellanalysis.External.pyqtgraph.flowchart import Flowchart, Node
from pyphoplacecellanalysis.External.pyqtgraph.flowchart.library.common import CtrlNode, PlottingCtrlNode
import pyphoplacecellanalysis.External.pyqtgraph as pg
import numpy as np
# matplotlib:
# import matplo... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,121 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/GLGraphicsItems/GLViewportOverlayPainterItem.py | from copy import deepcopy
from typing import OrderedDict
import OpenGL.GL as GL
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph.opengl import GLAxisItem, GLGraphicsItem, GLGridItem, GLViewWidget
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,122 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/SpikeRasterWidgets/spike_raster_widgets.py | # .SpikeRasterWidgets
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui, QtWidgets
from pyphocorehelpers.gui.Qt.widget_positioning_helpers import WidgetPositioningHelpers
from pyphoplacecellanalysis.GUI.PyQtPlot.Widgets.SpikeRasterWidgets.SpikeRasterBase import SpikeRasterBase
from pyphoplacecell... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,123 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Flowchart/CustomNodes/MiscNodes/ExtendedCtrlNode.py | from pyphoplacecellanalysis.External.pyqtgraph.flowchart.library.common import generateUi, CtrlNode
# from pyphoplacecellanalysis.External.pyqtgraph.Node import Node
from pyphoplacecellanalysis.External.pyqtgraph.widgets.FeedbackButton import FeedbackButton
from pyphoplacecellanalysis.External.pyqtgraph.widgets.CheckTa... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,124 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Mixins/CheckTableCtrlOwningMixin.py | import numpy as np
class CheckTableCtrlOwningMixin:
""" Implementor owns a CheckTable control
Required Properties:
self.configRows = []
self.ctrls['included_configs_table']
"""
@property
def check_table_ctrl(self):
""" The checktable control """
return sel... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,125 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Batch/NeptuneAiHelpers.py | import os
from attrs import define, Factory, field
import neptune # for logging progress and results
from neptune.types import File
import pathlib
from pathlib import Path
from neuropy.utils.result_context import IdentifyingContext
from pyphocorehelpers.function_helpers import function_attributes
"""
if enable_nept... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,126 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Unused/CustomGridLayout.py | from qtpy import QtWidgets, QtCore
class CustomGridLayout(QtWidgets.QVBoxLayout):
""" A replacement for QGridLayout that allows insert/deletion of rows into the layout at runtime to overcome the issue of being unable to set it
https://stackoverflow.com/questions/42084879/how-to-insert-qwidgets-in-the-middle-of... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,127 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Flowchart/CustomNodes/BasePipeline/PipelineFilteringDataNode.py | from typing import OrderedDict
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtGui, QtCore
from pyphoplacecellanalysis.External.pyqtgraph.widgets.ProgressDialog import ProgressDialog
# pyPhoPlaceCellAnalysis:
from pyphoplacecellanalysis.GUI.PyQtPlot.Flowchart.CustomNodes.MiscNodes.ExtendedCtrlNode import Ex... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,128 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/pyqtgraph/examples/PlotSpeedTest.py | #!/usr/bin/python
"""
Update a simple plot as rapidly as possible to measure speed.
"""
import argparse
from collections import deque
from time import perf_counter
import numpy as np
import pyphoplacecellanalysis.External.pyqtgraph as pg
import pyphoplacecellanalysis.External.pyqtgraph.functions as fn
import pyphopl... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,129 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyVista/InteractivePlotter/Model/InterfaceProperties.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
@author: pho
"""
class InterfaceProperties(object):
""" Holds user interface state, such as the current animation status or the slider's values """
def __init__(self, active_timestamp_slider_wrapper):
# self.curr_plot_update_step = 1 # Update every fr... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,130 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Flowchart/CustomNodes/Mixins/AssociatedOutputWidgetNodeMixin.py | from pyphoplacecellanalysis.External.pyqtgraph.flowchart import Flowchart, Node
import pyphoplacecellanalysis.External.pyqtgraph.flowchart.library as fclib
from pyphoplacecellanalysis.External.pyqtgraph.flowchart.library.common import CtrlNode
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtGui, QtCore
impor... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,131 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/Stages/DisplayFunctions/Ratemaps.py | from copy import deepcopy
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from neuropy.analyses.placefields import PfND
from pyphocorehelpers.mixins.member_enumerating import AllFunctionEnumeratingMixin
from pyphoplacecellanalysis.General.Pipeline.Stages.DisplayFunctions.DisplayFunctionRegistryH... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,132 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Flowchart/pyqtplot_Flowchart.py | from pyphoplacecellanalysis.External.pyqtgraph.flowchart import Flowchart, Node
from pyphoplacecellanalysis.GUI.PyQtPlot.Flowchart.ReloadableNodeLibrary import ReloadableNodeLibrary
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtGui, QtCore, QtWidgets
# Must be called before any figures are created:
import... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,133 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/burst-detection-master/lib_final_ehv.py | import os, glob
import csv
import sys
sys.setrecursionlimit(1500)
import h5py
import pickle
import copy
import numpy as np
import scipy.ndimage.filters as filters
import matplotlib as mpl
import matplotlib.patches as mpatches
import matplotlib.pyplot as plt
plt.ion()
# If you plan to run the script multiple times... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,134 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Widgets/Testing/EpochsSelectionWidget.py | """
Create a pyqt5 class that creates the following gui, described from top to bottom:
1. Contains a label that says "Epochs:"
2. Contains a dynamic listbox containing the list of Epochs current displayed. Each row contains their title, a button to toggle their visibility, and a button to show an options window.
"""
im... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,135 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/Stages/ComputationFunctions/ExtendedStats.py | from copy import deepcopy
import numpy as np
import pandas as pd
from pyphocorehelpers.indexing_helpers import build_pairwise_indicies
from scipy import stats # for compute_relative_entropy_divergence_overlap
from scipy.special import rel_entr # alternative for compute_relative_entropy_divergence_overlap
from pyphoc... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,136 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/PhoPositionalData/analysis/interactive_placeCell_config.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
@author: pho
"""
import sys
import numpy as np
from pathlib import Path
# refactored to pyphoplacecellanalysis.General.Configs.DynamicConfigs
from pyphoplacecellanalysis.General.Configs.DynamicConfigs import VideoOutputModeConfig, PlottingConfig, InteractivePlaceCellC... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,137 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/breeze_style_sheets/example/whatsthis.py | #!/usr/bin/env python
#
# The MIT License (MIT)
#
# Copyright (c) <2022-Present> <Alex Huszagh>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the 'Software'), to deal
# in the Software without restriction, including without limita... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,138 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/Mixins/TimeCurves/actions/UNUSED_addRenderableActions.py | # addRenderableActions
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui, QtWidgets, mkQApp, uic
from pyphoplacecellanalysis.Resources import GuiResources, ActionIcons
from pyphoplacecellanalysis.GUI.PyQtPlot.Widgets.Mixins.TimeCurves.actions.U... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,139 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/breeze_style_sheets/configure.py | '''
configure
=========
Configure icons, stylesheets, and resource files.
'''
__version__ = '0.1.0'
import argparse
import glob
import json
import os
import re
import shutil
import subprocess
import sys
home = os.path.dirname(os.path.realpath(__file__))
dist = os.path.join(home, 'dist')
qrc_dist = os.pa... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,140 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Flowchart/CustomNodes/Compute/PhoPythonEvalNode.py | import os
import re
from typing import final
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtGui, QtCore, QtWidgets
translate = QtCore.QCoreApplication.translate
from pyphoplacecellanalysis.External.pyqtgraph.flowchart.library.common import Node
from pyphoplacecellanalysis.External.pyqtgraph.parametertree.p... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,141 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /tests/test_TestDecodedFilterEpochsResult.py | import unittest
import sys, os
from pathlib import Path
from copy import deepcopy
import numpy as np
import pandas as pd
# Add Neuropy to the path as needed
tests_folder = Path(os.path.dirname(__file__))
root_project_folder = tests_folder.parent
try:
import pyphoplacecellanalysis
except ModuleNotFoundError as e: ... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,142 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Widgets/IdentifyingContextSelector/Uic_AUTOGEN_IdentifyingContextSelectorWidget.py | # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\Qt\Widgets\IdentifyingContextSelector\IdentifyingContextSelectorWidget.ui'
#
# Created by: PyQt5 UI code generator 5.15.4
#
# WARNING: Any manual changes made to this f... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,143 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /tests/test_decoders.py | import unittest
import sys, os
from pathlib import Path
from copy import deepcopy
import numpy as np
import pandas as pd
# Add Neuropy to the path as needed
tests_folder = Path(os.path.dirname(__file__))
root_project_folder = tests_folder.parent
try:
import pyphoplacecellanalysis
except ModuleNotFoundError as e: ... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,144 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Mixins/InterfaceOptionsProvidingMixin.py |
class InterfaceOptionsProvidingMixin:
@property
def epoch_labels(self):
"""The epoch_labels property."""
return list(self.sess.epochs.labels) # ['pre', 'maze1', 'post1', 'maze2', 'post2']
@property
def epoch_named_timeranges(self):
"""The epoch_labels property.
[<Na... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,145 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Widgets/ProgrammaticPipelineWidget/ProgrammaticPipelineWidget.py | # ProgrammaticPipelineWidget.py
# Generated from c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\Qt\Widgets\ProgrammaticPipelineWidget\ProgrammaticPipelineWidget.ui automatically by PhoPyQtClassGenerator VSCode Extension
import sys
import os
from PyQt5 import QtGui, QtWidgets, QtCore, uic
from... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,146 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/PhoPositionalData/plotting/mixins/occupancy_plotting_mixins.py | # occupancy_plotting_mixins.py
# from pyphoplacecellanalysis.GUI.PyVista.InteractivePlotter.shared_helpers import PlotGroupWrapper
import param
from pyphoplacecellanalysis.Pho3D.PyVista.graphs import plot_3d_binned_bars, plot_point_labels
from pyphoplacecellanalysis.PhoPositionalData.plotting.mixins.general_plotting_mi... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,147 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/Stages/DisplayFunctions/EloyAnalysis.py | import numpy as np
import pandas as pd
from pyphocorehelpers.mixins.member_enumerating import AllFunctionEnumeratingMixin
from pyphoplacecellanalysis.General.Pipeline.Stages.DisplayFunctions.DisplayFunctionRegistryHolder import DisplayFunctionRegistryHolder
import pyphoplacecellanalysis.External.pyqtgraph as pg # for... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,148 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Flowchart/CustomNodes/DisplayNodes/ImageViewNode.py | from pyphoplacecellanalysis.External.pyqtgraph.flowchart import Flowchart, Node
import pyphoplacecellanalysis.External.pyqtgraph.flowchart.library as fclib
from pyphoplacecellanalysis.External.pyqtgraph.flowchart.library.common import CtrlNode
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtGui, QtCore
impor... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,149 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Examples/pyqtplot_DockAreaLayouts.py | import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui
import pyphoplacecellanalysis.External.pyqtgraph.console
import numpy as np
from pyphoplacecellanalysis.External.pyqtgraph.dockarea import *
def plot_dockAreaWidget(title='PhoDockAreaWidgetAp... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,150 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/breeze_style_sheets/example/placeholder_text.py | #!/usr/bin/env python
#
# The MIT License (MIT)
#
# Copyright (c) <2022-Present> <Alex Huszagh>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the 'Software'), to deal
# in the Software without restriction, including without limita... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,151 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/Stages/DisplayFunctions/DisplayFunctionRegistryHolder.py | from pyphocorehelpers.mixins.auto_registering import RegistryHolder
from typing import Dict
class DisplayFunctionRegistryHolder(RegistryHolder):
REGISTRY: Dict[str, "DisplayFunctionRegistryHolder"] = {}
| {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,152 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho2D/decoder_difference.py | import numpy as np
import matplotlib.pyplot as plt
from matplotlib.widgets import Slider
from matplotlib.patches import FancyArrowPatch, FancyArrow
from matplotlib import patheffects
from pyphocorehelpers.gui.interaction_helpers import CallbackWrapper
from pyphocorehelpers.function_helpers import function_attributes
... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,153 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/MainApplicationWindows/PhoPipelineMainWindow/MainPipelineWindowWithDockArea/MainPipelineWindowWithDockArea.py | # MainPipelineWindowWithDockArea.py
# Generated from c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\PyQtPlot\Windows\MainPipelineWindowWithDockArea.ui automatically by PhoPyQtClassGenerator VSCode Extension
import sys
import os
from datetime import datetime, timezone, timedelta
import numpy as... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,154 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/NeuronVisualSelectionControls/NeuronVisualSelectionControlsWidgetBase.py | # NeuronVisualSelectionControlsWidgetBase.py
# Generated from c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\Qt\NeuronVisualSelectionControls\NeuronVisualSelectionControlsWidgetBase.ui automatically by PhoPyQtClassGenerator VSCode Extension
import sys
import os
from pathlib import Path
from p... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,155 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Flowchart/CustomNodes/BasePipeline/PipelineInputDataNode.py | from pathlib import Path
from pyphoplacecellanalysis.External.pyqtgraph.flowchart import Flowchart, Node
import pyphoplacecellanalysis.External.pyqtgraph.flowchart.library as fclib
from pyphoplacecellanalysis.External.pyqtgraph.flowchart.library.common import CtrlNode
from pyphoplacecellanalysis.External.pyqtgraph.Qt i... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,156 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Batch/NonInteractiveProcessing.py | import sys
from copy import deepcopy
from pathlib import Path
import numpy as np
## MATPLOTLIB Imports:
import matplotlib
import matplotlib.pyplot as plt
import matplotlib as mpl
from matplotlib.backends import backend_pdf
from neuropy.core.session.Formats.BaseDataSessionFormats import DataSessionFormatRegistryHold... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,157 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Params/ParameterTrees/ExportPipelineParametersTree.py | import pyphoplacecellanalysis.External.pyqtgraph.parametertree.parameterTypes as pTypes
from pyphoplacecellanalysis.External.pyqtgraph.parametertree import Parameter, ParameterTree
from pyphoplacecellanalysis.GUI.PyQtPlot.Params.SaveRestoreStateParamHelpers import default_parameters_save_restore_state_button_children, ... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,158 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/PhoPositionalData/plotting/mixins/placefield_plotting_mixins.py | import param
import numpy as np
import pandas as pd
from neuropy.core.neuron_identities import NeuronIdentityAccessingMixin
from pyphocorehelpers.indexing_helpers import get_dict_subset
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore
from pyphoplacecellanalysis.PhoPositionalData.plotting.mixins.genera... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,159 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/Stages/FilterFunctions/FilterFunctionRegistryHolder.py | from pyphocorehelpers.mixins.auto_registering import RegistryHolder
from typing import Dict
class FilterFunctionRegistryHolder(RegistryHolder):
REGISTRY: Dict[str, "FilterFunctionRegistryHolder"] = {}
""" FilterPipelineStage
self.registered_filter_function_dict = OrderedDict()
self.register_default_known_... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,160 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho2D/PyQtPlots/TimeSynchronizedPlotters/TimeSynchronizedPlotterBase.py | import numpy as np
import pandas as pd
from qtpy import QtCore, QtWidgets
from neuropy.analyses.time_dependent_placefields import PfND_TimeDependent
import pyphoplacecellanalysis.External.pyqtgraph as pg
# from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui
from pyphocorehelpers.DataStructure.gener... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,161 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/PhoPositionalData/import_data.py | # -*- coding: utf-8 -*-
"""
Created on Sat Oct 9 12:33:48 2021
@author: Pho
# TODO: this seems to relate to loading RoyMaze1! Does/Did that functionality work in Python?
"""
import numpy as np
import pandas as pd
from pathlib import Path
from pyphoplacecellanalysis.PhoPositionalData.load_exported import import_m... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,162 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/breeze_style_sheets/example/dial.py | #!/usr/bin/env python
#
# The MIT License (MIT)
#
# Copyright (c) <2022-Present> <Alex Huszagh>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the 'Software'), to deal
# in the Software without restriction, including without limita... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,163 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Widgets/DecoderPlotSelectorControls/Uic_AUTOGEN_DecoderPlotSelectorWidget.py | # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\Qt\Widgets\DecoderPlotSelectorControls\DecoderPlotSelectorWidget.ui'
#
# Created by: PyQt5 UI code generator 5.15.4
#
# WARNING: Any manual changes made to this file wi... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,164 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/Stages/DisplayFunctions/MultiContextComparingDisplayFunctions/MultiContextComparingDisplayFunctions.py | from copy import deepcopy
import numpy as np
import matplotlib.pyplot as plt
from neuropy.utils.dynamic_container import overriding_dict_with # required for _display_2d_placefield_result_plot_raw
from pyphocorehelpers.function_helpers import function_attributes
from pyphocorehelpers.programming_helpers import metadat... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,165 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Pipeline/Stages/DisplayFunctions/SpikeRasters.py | from typing import Any, Union
from copy import deepcopy
import numpy as np
import pandas as pd
from functools import partial
from attrs import define, Factory
from indexed import IndexedOrderedDict
from neuropy.core.neuron_identities import NeuronIdentityAccessingMixin
from neuropy.utils.result_context import overwrit... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,166 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Model/Datasources/Datasources.py | from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore
import numpy as np
import pandas as pd
from pyphocorehelpers.print_helpers import SimplePrintable, PrettyPrintable
from pyphoplacecellanalysis.General.DataSeriesToSpatial import DataSeriesToSpatial
class BaseDatasource(SimplePrintable, PrettyPrintab... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,167 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho3D/PyVista/gui.py | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
@author: pho
User Interface Rendering and interactivity helpers
TODO: REORGANIZE_PLOTTER_SCRIPTS: PyVista
"""
import numpy as np
import pyvista as pv
from pyphocorehelpers.gui.PyVista.PhoCustomVtkWidgets import PhoWidgetHelper
def print_controls_helper_text():
... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,168 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/Qt/Widgets/DecoderPlotSelectorControls/DecoderPlotSelectorWidget.py | # DecoderPlotSelectorWidget.py
# Generated from c:\Users\pho\repos\pyPhoPlaceCellAnalysis\src\pyphoplacecellanalysis\GUI\Qt\DecoderPlotSelectorWidget\DecoderPlotSelectorWidget.ui automatically by PhoPyQtClassGenerator VSCode Extension
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.Ex... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,169 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/External/breeze_style_sheets/example/standard_icons.py | #!/usr/bin/env python
#
# The MIT License (MIT)
#
# Copyright (c) <2022-Present> <Alex Huszagh>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the 'Software'), to deal
# in the Software without restriction, including without limita... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,170 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/SpikeRasterWidgets/Spike3DRaster.py | from copy import deepcopy
import time
import sys
import pyphoplacecellanalysis.External.pyqtgraph as pg
from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui, QtWidgets
import pyphoplacecellanalysis.External.pyqtgraph.opengl as gl # for 3D raster plot
import numpy as np
from pyphocorehelpers.indexing_... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,171 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyVista/InteractivePlotter/Mixins/AnimationStateMixin.py |
class AnimationStateBaseMixin:
""" used by AnimationStateVTKMixin (specialized for VTK) which is in-turn used by PhoInteractivePlotter
Required Properties:
self.interface_properties.animation_state
"""
# define the animation switch
def toggle_animation(self, state):
self.inte... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,172 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/Pho2D/PyQtPlots/TimeSynchronizedPlotters/Mixins/AnimalTrajectoryPlottingMixin.py | # AnimalTrajectoryPlottingMixin
import numpy as np
import pyphoplacecellanalysis.External.pyqtgraph as pg
from qtpy import QtCore, QtWidgets
class AnimalTrajectoryPlottingMixin:
""" custom mixin class
Used by TimeSynchronizedOccupancyPlotter and TimeSynchronizedPlacefieldsPlotter
"""
@p... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,173 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/GUI/PyQtPlot/Widgets/GraphicsObjects/CustomInfiniteLine.py | from pyphoplacecellanalysis.External.pyqtgraph.Qt import QtCore, QtGui
from pyphoplacecellanalysis.External.pyqtgraph.graphicsItems.InfiniteLine import InfiniteLine
class CustomInfiniteLine(InfiniteLine):
""" A custom pg.InfiniteLine subclass with custom requirements to hold a customizable modifier key or mouse b... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
94,174 | CommanderPho/pyPhoPlaceCellAnalysis | refs/heads/master | /src/pyphoplacecellanalysis/General/Mixins/SpikesRenderingBaseMixin.py | from typing import OrderedDict
import numpy as np
import pandas as pd
# from pyphoplacecellanalysis.PhoPositionalData.plotting.mixins.spikes_mixins import SpikesDataframeOwningMixin, SpikeRenderingMixin, HideShowSpikeRenderingMixin
from pyphocorehelpers.indexing_helpers import safe_get
from pyphocorehelpers.DataStruct... | {"/src/pyphoplacecellanalysis/Pho3D/__init__.py": ["/src/pyphoplacecellanalysis/Pho3D/points.py", "/src/pyphoplacecellanalysis/Pho3D/spikes.py"]} |
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