index int64 | repo_name string | branch_name string | path string | content string | import_graph string |
|---|---|---|---|---|---|
17,446 | seizans/sandbox-django | HEAD | /sandbox/core/factories.py | # coding=utf8
import string
import factory
from factory.fuzzy import FuzzyText
from core.models import Company, Staff
class CompanyFactory(factory.DjangoModelFactory):
FACTORY_FOR = Company
id = factory.Sequence(lambda n: n)
name = FuzzyText(prefix='1499', length=9, chars=string.digits)
# name = fac... | {"/sandbox/core/search_indexes.py": ["/sandbox/core/models.py"], "/sandbox/settings/store_stg.py": ["/sandbox/settings/_store_base.py", "/sandbox/settings/_stg.py"], "/sandbox/settings/store_dev.py": ["/sandbox/settings/_store_base.py", "/sandbox/settings/_dev.py"], "/sandbox/settings/_store_base.py": ["/sandbox/settin... |
17,447 | seizans/sandbox-django | HEAD | /sandbox/settings/back_stg.py | # coding=utf8
# 管理用アプリケーションの、ステージング環境用の設定
from ._back_base import * # NOQA
from ._stg import * # NOQA
| {"/sandbox/core/search_indexes.py": ["/sandbox/core/models.py"], "/sandbox/settings/store_stg.py": ["/sandbox/settings/_store_base.py", "/sandbox/settings/_stg.py"], "/sandbox/settings/store_dev.py": ["/sandbox/settings/_store_base.py", "/sandbox/settings/_dev.py"], "/sandbox/settings/_store_base.py": ["/sandbox/settin... |
17,448 | seizans/sandbox-django | HEAD | /sandbox/settings/back_dev.py | # coding=utf8
# 管理用アプリケーションの、開発環境用の設定
from ._back_base import * # NOQA
from ._dev import * # NOQA
# .dev で定義されている追加分を追加する
INSTALLED_APPS += INSTALLED_APPS_PLUS
| {"/sandbox/core/search_indexes.py": ["/sandbox/core/models.py"], "/sandbox/settings/store_stg.py": ["/sandbox/settings/_store_base.py", "/sandbox/settings/_stg.py"], "/sandbox/settings/store_dev.py": ["/sandbox/settings/_store_base.py", "/sandbox/settings/_dev.py"], "/sandbox/settings/_store_base.py": ["/sandbox/settin... |
17,451 | igniteflow/polymorph | refs/heads/master | /polymorph/tools.py | import yaml
class RowTools(object):
"""
transform a Python object to csv friendly rows
Example:
{
'foo': 'bar',
'cars': ['one', 'two'],
'fruit': [
{'apple': 'green'},
{'banana': 'yellow'},
]
}
Becomes ro... | {"/polymorph/tests/test_tools.py": ["/polymorph/tools.py"]} |
17,452 | igniteflow/polymorph | refs/heads/master | /setup.py | from setuptools import setup
setup(name='polymorph',
version='0.1',
description='Python tooling to tranform data',
url='https://github.com/igniteflow/polymorph',
author='Phil Tysoe',
author_email='philtysoe@gmail.com',
license='MIT',
packages=['polymorph'],
zip_safe=Fals... | {"/polymorph/tests/test_tools.py": ["/polymorph/tools.py"]} |
17,453 | igniteflow/polymorph | refs/heads/master | /polymorph/tests/test_tools.py | import os
from polymorph.tools import YamlToCsv, RowTools
TEST_DATA_DIR = './polymorph/tests/test_data/'
def get_test_file_path(filename):
return '{}{}'.format(TEST_DATA_DIR, filename)
def test_load_from_file():
yaml_to_csv = YamlToCsv()
path = get_test_file_path('simple_example.yaml')
assert yaml... | {"/polymorph/tests/test_tools.py": ["/polymorph/tools.py"]} |
17,472 | valeriobasile/storkl | refs/heads/master | /app/__init__.py | from flask import Flask
from flask.ext.sqlalchemy import SQLAlchemy
from flask.ext import restful
from sqlalchemy import create_engine
import os
from sqlalchemy.ext.declarative import declarative_base
app = Flask(__name__)
api = restful.Api(app)
# create database
basedir = os.path.abspath(os.path.dirname(__file__))
S... | {"/db_create_test_data.py": ["/app/__init__.py"], "/app/views.py": ["/app/__init__.py"], "/app/models.py": ["/app/__init__.py", "/app/utils.py"]} |
17,473 | valeriobasile/storkl | refs/heads/master | /db_create_test_data.py | from app import db, models
from datetime import datetime
# create the database
db.create_all()
# empty the db
for user in models.User.query.all():
db.session.delete(user)
for project in models.Project.query.all():
db.session.delete(project)
for task in models.Task.query.all():
db.session.delete(task... | {"/db_create_test_data.py": ["/app/__init__.py"], "/app/views.py": ["/app/__init__.py"], "/app/models.py": ["/app/__init__.py", "/app/utils.py"]} |
17,474 | valeriobasile/storkl | refs/heads/master | /app/utils.py | def flatten(list_of_lists):
return [val for subl in list_of_lists for val in subl]
def unique(l):
return list(set(l))
| {"/db_create_test_data.py": ["/app/__init__.py"], "/app/views.py": ["/app/__init__.py"], "/app/models.py": ["/app/__init__.py", "/app/utils.py"]} |
17,475 | valeriobasile/storkl | refs/heads/master | /test_requests.py | import requests
r = requests.get('http://127.0.0.1:5000/u/valerio')
res = r.json()
print res
r = requests.post('http://127.0.0.1:5000/u/new', data={'username' : 'valerio', 'email' : 'valerio@storkl.net'})
res = r.json()
print res
r = requests.get('http://127.0.0.1:5000/u/valerio')
res = r.json()
print res
r = reque... | {"/db_create_test_data.py": ["/app/__init__.py"], "/app/views.py": ["/app/__init__.py"], "/app/models.py": ["/app/__init__.py", "/app/utils.py"]} |
17,476 | valeriobasile/storkl | refs/heads/master | /app/views.py | from app import db, app, models, api
from utils import *
from flask import make_response, jsonify
from flask.ext import restful
from flask.ext.restful import abort, reqparse
from sqlalchemy.exc import IntegrityError
from sqlalchemy.orm.exc import UnmappedInstanceError
### User ###
class User(restful.Resource):
def... | {"/db_create_test_data.py": ["/app/__init__.py"], "/app/views.py": ["/app/__init__.py"], "/app/models.py": ["/app/__init__.py", "/app/utils.py"]} |
17,477 | valeriobasile/storkl | refs/heads/master | /app/models.py | from app import db
from app.utils import *
assignment = db.Table('assignment',
db.Column('user', db.String(64), db.ForeignKey('user.username')),
db.Column('task', db.Integer, db.ForeignKey('task.id'))
)
trust = db.Table('trust',
db.Column('trustee', db.String(64), db.ForeignKey('user.username'), primary... | {"/db_create_test_data.py": ["/app/__init__.py"], "/app/views.py": ["/app/__init__.py"], "/app/models.py": ["/app/__init__.py", "/app/utils.py"]} |
17,479 | aditya-kandada/democrat | refs/heads/master | /polls/urls.py | from django.conf.urls import patterns
from django.conf.urls import url
urlpatterns = patterns('polls.views',
# Examples:
url(r'^$', 'index', name='index'),
) | {"/polls/views.py": ["/polls/models.py"], "/polls/admin.py": ["/polls/models.py"]} |
17,480 | aditya-kandada/democrat | refs/heads/master | /polls/models.py | from django.db import models
class Candidate(models.Model):
name = models.CharField(max_length=100)
first_name = models.CharField(max_length=100, null=True)
last_name = models.CharField(max_length=100, null=True)
description = models.CharField(max_length=250)
upvote = models.IntegerField(max_length... | {"/polls/views.py": ["/polls/models.py"], "/polls/admin.py": ["/polls/models.py"]} |
17,481 | aditya-kandada/democrat | refs/heads/master | /polls/views.py | from django.shortcuts import render
from polls.models import Candidate
def index(request):
candidates = Candidate.objects.all().order_by('name')
return render(request, 'index.html', {'candidates':candidates}) | {"/polls/views.py": ["/polls/models.py"], "/polls/admin.py": ["/polls/models.py"]} |
17,482 | aditya-kandada/democrat | refs/heads/master | /polls/admin.py | from django.contrib import admin
# Register your models here.
from polls.models import Candidate
class CandidateAdmin(admin.ModelAdmin):
list_display = ['name', 'description', 'upvote', 'downvote']
admin.site.register(Candidate, CandidateAdmin)
| {"/polls/views.py": ["/polls/models.py"], "/polls/admin.py": ["/polls/models.py"]} |
17,537 | MfonUdoh/Mazer | refs/heads/master | /game.py | class Game(object):
def __init__(self):
#Board width
self.size = 10
self.minMoves = 0
self.level = 0
self.marksLocations = []
self.wallsLocations = []
self.empties = self.size ** 2 - len(self.wallsLocations) - len(self.marksLocations)
self.maxLevels =... | {"/main.py": ["/game.py"]} |
17,538 | MfonUdoh/Mazer | refs/heads/master | /main.py | import levels, pygame, game
from pygame.locals import *
game = game.Game()
running = True
end = False
pygame.init()
screen_width = 600
screen_height = 600
multiple = 50
screen = pygame.display.set_mode((screen_width, screen_height))
pygame.display.set_caption("Mazer")
radius = int(0.5 * multiple)
wallwidth = int(1 ... | {"/main.py": ["/game.py"]} |
17,548 | Qyon/AllegroObserver | refs/heads/master | /allegro/api.py | # coding=utf-8
__author__ = 'Qyon'
from suds.client import Client
from suds import WebFault
import time
import logging
logger = logging.getLogger(__name__)
class InvalidSessionException(Exception):
pass
class ApiHelper(object):
"""
...
"""
def __init__(self, settings):
... | {"/run.py": ["/observer.py"]} |
17,549 | Qyon/AllegroObserver | refs/heads/master | /allegro/__init__.py | __author__ = 'Qyon'
from api import ApiHelper
| {"/run.py": ["/observer.py"]} |
17,550 | Qyon/AllegroObserver | refs/heads/master | /settings.sample.py | __author__ = 'Qyon'
ALLEGRO_LOGIN='login'
ALLEGRO_PASSWORD='pass'
ALLEGRO_KEY='key'
ALLEGRO_LOCALVERSION=3
CATEGORY_ID=28273
EMAIL_TO='samplemail@gmail.com'
EMAIL_FROM='samplemail@gmail.com'
#in minutes
CHECK_INTERVAL=30
| {"/run.py": ["/observer.py"]} |
17,551 | Qyon/AllegroObserver | refs/heads/master | /run.py | __author__ = 'Qyon'
import settings
from observer import Observer
import logging
# create console handler and set level to debug
consoleHandler = logging.StreamHandler()
consoleHandler.setLevel(logging.DEBUG)
# create file handler and set level to debug
fileHandler = logging.FileHandler('allegro_observer.log')
fileHa... | {"/run.py": ["/observer.py"]} |
17,552 | Qyon/AllegroObserver | refs/heads/master | /observer.py | # coding=utf-8
__author__ = 'Qyon'
import allegro
import time
# Import smtplib for the actual sending function
import smtplib
# Import the email modules we'll need
from email.mime.text import MIMEText
import logging
logger = logging.getLogger(__name__)
print __name__
class Observer(object):
def __init__(self, set... | {"/run.py": ["/observer.py"]} |
17,562 | rudra012/dj_celery_docker | refs/heads/master | /app/celerydemo/models.py | from __future__ import absolute_import, unicode_literals
from django.contrib.postgres.fields import JSONField
from django.db import models
from django.db.models import signals
from django.utils.translation import ugettext_lazy as _
from django_celery_beat.models import PeriodicTask, PeriodicTasks
from . import schedu... | {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,563 | rudra012/dj_celery_docker | refs/heads/master | /app/hello_django/urls.py | from django.conf import settings
from django.conf.urls.static import static
from django.contrib import admin
from django.contrib.auth.models import User
from django.urls import path, include
from rest_framework import serializers, viewsets
from rest_framework.routers import DefaultRouter
# from upload.views import imag... | {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,564 | rudra012/dj_celery_docker | refs/heads/master | /app/celerydemo/tasks.py | from celery import shared_task
from .models import TaskLog
@shared_task
def logging_task():
print('Logging task invoked...........')
TaskLog.objects.create(task_name='test')
| {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,565 | rudra012/dj_celery_docker | refs/heads/master | /app/celerydemo/clockedschedule.py | """Clocked schedule Implementation."""
from __future__ import absolute_import, unicode_literals
from celery import schedules
from celery.utils.time import maybe_make_aware
from collections import namedtuple
schedstate = namedtuple('schedstate', ('is_due', 'next'))
class clocked(schedules.BaseSchedule):
"""clo... | {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,566 | rudra012/dj_celery_docker | refs/heads/master | /app/hello_django/celery_app.py | import os
from celery import Celery
from django.conf import settings
# Set default Django settings
os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'hello_django.settings')
# os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'dcs.settings')
app = Celery('hello_django')
app.config_from_object('django.conf:settings')
# a... | {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,567 | rudra012/dj_celery_docker | refs/heads/master | /app/celerydemo/admin.py | from django.contrib import admin
from django_celery_beat.admin import PeriodicTaskAdmin
from django_celery_beat.models import SolarSchedule
from .models import TaskLog, CustomPeriodicTask
class CustomPeriodicTaskAdmin(PeriodicTaskAdmin):
fieldsets = (
(None, {
'fields': ('name', 'description'... | {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,568 | rudra012/dj_celery_docker | refs/heads/master | /app/celerydemo/migrations/0002_customperiodictask.py | # Generated by Django 2.2.1 on 2019-05-24 09:12
import django.contrib.postgres.fields.jsonb
from django.db import migrations, models
import django.db.models.deletion
class Migration(migrations.Migration):
dependencies = [
('django_celery_beat', '0011_auto_20190508_0153'),
('celerydemo', '0001_in... | {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,569 | rudra012/dj_celery_docker | refs/heads/master | /app/celerydemo/schedules.py | from celery import schedules
class my_crontab(schedules.crontab):
def is_due(self, last_run_at):
print('cron is_due: ', last_run_at)
# if last_run_at - date
# if True:
# return schedules.schedstate(False, 5.0)
rem_delta = self.remaining_estimate(last_run_at)
rem... | {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,570 | rudra012/dj_celery_docker | refs/heads/master | /app/celerydemo/apps.py | from django.apps import AppConfig
class CelerydemoConfig(AppConfig):
name = 'celerydemo'
| {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,571 | rudra012/dj_celery_docker | refs/heads/master | /app/celerydemo/schedulers.py | from __future__ import absolute_import, unicode_literals
import datetime
import math
from celery import schedules
from celery.utils.time import maybe_make_aware
from dateutil.relativedelta import relativedelta
from django.conf import settings
from django_celery_beat.schedulers import ModelEntry, DatabaseScheduler
fro... | {"/app/celerydemo/tasks.py": ["/app/celerydemo/models.py"], "/app/celerydemo/admin.py": ["/app/celerydemo/models.py"], "/app/celerydemo/schedulers.py": ["/app/celerydemo/models.py"]} |
17,574 | DevangML/Phoenix-The-Virtual-Assistant | refs/heads/main | /Phoenix/config/config.py | wolframalpha_id = "4LXRE2-TEHE99AKKJ"
weather_api_key = "f73e77fa6efab5c5ec319e3732ce8eea" | {"/main.py": ["/gui.py", "/ui_splash_screen.py"]} |
17,575 | DevangML/Phoenix-The-Virtual-Assistant | refs/heads/main | /ui_splash_screen.py | # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'splash_screen.ui'
#
# Created by: PyQt5 UI code generator 5.15.2
#
# WARNING: Any manual changes made to this file will be lost when pyuic5 is
# run again. Do not edit this file unless you know what you are doing.
from PyQt5 import QtCore... | {"/main.py": ["/gui.py", "/ui_splash_screen.py"]} |
17,576 | DevangML/Phoenix-The-Virtual-Assistant | refs/heads/main | /main.py | import re
import os
import random
import pprint
import datetime
import requests
import pyjokes
import time
import pyautogui
import pywhatkit
import wolframalpha
from PIL import Image
from Phoenix import PhoenixAssistant
from PyQt5.QtCore import *
from PyQt5.QtGui import *
from Phoenix.config import config
from gui impo... | {"/main.py": ["/gui.py", "/ui_splash_screen.py"]} |
17,577 | DevangML/Phoenix-The-Virtual-Assistant | refs/heads/main | /Phoenix/features/google_search.py | from selenium import webdriver
from selenium.webdriver.common.keys import Keys
import re, pyttsx3
def speak(text):
engine = pyttsx3.init('sapi5')
voices = engine.getProperty('voices')
engine.setProperty('voices', voices[0].id)
engine.say(text)
engine.runAndWait()
engine.setProperty('rate', 18... | {"/main.py": ["/gui.py", "/ui_splash_screen.py"]} |
17,578 | DevangML/Phoenix-The-Virtual-Assistant | refs/heads/main | /gui.py | # -*- coding: utf-8 -*-
# Form implementation generated from reading ui file 'gui.ui'
#
# Created by: PyQt5 UI code generator 5.15.2
#
# WARNING: Any manual changes made to this file will be lost when pyuic5 is
# run again. Do not edit this file unless you know what you are doing.
from PyQt5 import QtCore, QtGui, Q... | {"/main.py": ["/gui.py", "/ui_splash_screen.py"]} |
17,591 | Klas96/YeastTrack | refs/heads/master | /UserInterface/Controls.py | import cv2
from Anlysis.VisulizeLinage import PlotLinageTree
from Anlysis.PrintMotherDoughter import printMotherDoghuther
from UserInterface.UpdateFrame import updateFrame
#TODO Make this the control class With method update
class Controls:
def __init__(self,video):
self.video = video
self.curre... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,592 | Klas96/YeastTrack | refs/heads/master | /test.py | import unittest
class TestStringMethods(unittest.TestCase):
def test_segmentation(self):
#TODO
pass
def test_something(self):
#TODO
pass
def test_somethingElse(self):
#TODO
pass
if __name__ == '__main__':
unittest.main() | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,593 | Klas96/YeastTrack | refs/heads/master | /Tracking/centroidTracker.py | from scipy.spatial import distance as dist
from collections import OrderedDict
import numpy as np
from Segmentation.cellInstance import cellInstance
from Tracking.TrackedCell import TrackedCell
#vaiabels
#objects
#disappeared
#maxDisappeared
class CentroidTracker():
#Constructor
def __init__(self, maxDisappeared=... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,594 | Klas96/YeastTrack | refs/heads/master | /Segmentation/cellInstance.py | import cv2
class cellInstance:
def __init__(self,contour,whi5Activ = -1):
self.whi5Activ = whi5Activ
self.contour = contour
def getPosition(self):
moments = cv2.moments(self.contour)
#TOOD Byt till funktioner ist??
cx = int(moments['m10']/moments['m00'])
cy = ... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,595 | Klas96/YeastTrack | refs/heads/master | /UserInterface/LoadData/LoadChannels.py | import cv2
from UserInterface.videoClass import Video
def loadChannels():
filePathOpt = "VideoData/tileScan2/tileScan2OptZ2.avi"
filePathFlo = "VideoData/tileScan2/tileScan2Flo.avi"
filePathOpt = "/home/klas/Documents/Chalmers/ExamensArbete/YeastTrack/VideoData/tileScan1/130419opt.avi"
filePathFlo = "... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,596 | Klas96/YeastTrack | refs/heads/master | /Segmentation/ConvexHull.py | import cv2
import numpy as np
#Pre: Binary image
#Ret: ConvexHull Binary image
def convexHull(img):
# Finding contours for the thresholded image
contours, hierarchy = cv2.findContours(img, cv2.RETR_TREE, cv2.CHAIN_APPROX_SIMPLE)
#im2, contours, hierarchy = cv2.findContours(frame, cv2.RETR_TREE, cv2.CHAIN_A... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,597 | Klas96/YeastTrack | refs/heads/master | /UserInterface/UpdateFrame.py | import cv2
from UserInterface.IncreasIntesity import increasIntens
#Update Frame Does scaling and adds all visual effect
#Pre
#Ret
def updateFrame(video,param):
[currentFrame,currentBlend,showMaskImg,showCellID,showLinagesTree,showOptImg,showWHI5ActivImg] = param
frame = video.getFrame(currentFrame)
#opt... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,598 | Klas96/YeastTrack | refs/heads/master | /Tracking/getEdgeToEdgeDist.py | def getSigmaEdegeToEdge(doughter,mother):
distMD = getEdgeToEdgeDist(doughter,mother)
#relatabelityFactor higher The closer the distance is to cellRadius
slopeFactor = 1.3
midPoint = 140
sigmaDist = 1-1/(1+slopeFactor**(midPoint-distMD))
return(sigmaDist)
def getEdgeToEdgeDist(doughter,mother):... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,599 | Klas96/YeastTrack | refs/heads/master | /Tracking/findLineage.py | from scipy.spatial import distance as dist
import numpy as np
from matplotlib import pyplot as plt
from Tracking.getEdgeToEdgeDist import getSigmaEdegeToEdge
def findLineage(trackedCells):
for doughter in trackedCells:
maxRelFactor = 0.0
for mother in trackedCells:
relFactor = getRelat... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,600 | Klas96/YeastTrack | refs/heads/master | /Segmentation/Preprocessing.py | from skimage.restoration import denoise_nl_means, estimate_sigma
from skimage import exposure
import cv2
import numpy as np
#Preprossesing of image using rescaling meanfiltering with sigma estimator and histogram equalization
#Pre: image Raw
#Ret: preprocessed image
def preprocess(img):
#Rescaling
#img = resca... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,601 | Klas96/YeastTrack | refs/heads/master | /Segmentation/watershed.py | import numpy as np
import cv2
from matplotlib import pyplot as plt
from Segmentation.cellInstance import cellInstance
from Segmentation.getWHI5Activity import getWHI5Activity
from Segmentation.FilterDetection import filterDetections
from Segmentation.OstuBinarizartion import getMaskFrame
from Segmentation.getThreshold ... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,602 | Klas96/YeastTrack | refs/heads/master | /UserInterface/getInstantSegmentImage.py | import cv2
import numpy as np
from UserInterface.getMaskImage import getMaskImage
#color all the blobs with individual colors
#Text size for all cells
def getCellInstImage(listOfCellInstances,sizeX,sizeY):
colorSet = [(0,7,100),(32,107,203),(237, 120, 255),(255, 170,0),(100,2,100)]
drawing = np.zeros((sizeX,... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,603 | Klas96/YeastTrack | refs/heads/master | /Segmentation/RandomForestSegmentaion.py | from Segmentation.ParmeterizeImagegs import imagesToPrameter
import pickle
import cv2
from matplotlib import pyplot as plt
from Segmentation.ConectedComponents import conectedCompontents
from Segmentation.FilterDetection import filterDetections
#Pre: Frame
#Ret: CellInstances in that frame
def rfSegmentetion(Frame):
... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,604 | Klas96/YeastTrack | refs/heads/master | /UserInterface/getMaskImage.py | import cv2
import numpy as np
#Pre: VideoFrame
#Ret: White on black maskFrame
def getMaskImage(frame):
frame = otsuThreshold(frame)
maskFrame = convexHull(frame)
return(maskFrame)
def otsuThreshold(frame):
gray = cv2.cvtColor(frame,cv2.COLOR_BGR2GRAY)
#apply thresholding
gotFrame, thresh = cv2... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,605 | Klas96/YeastTrack | refs/heads/master | /Analysis/PrintMotherDoughter.py |
def printMotherDoghuther(trackedCells):
for trackedCell in trackedCells:
doughterID = trackedCell.getCellID()
motgherID = trackedCell.getMotherCell()
relatabelityFactor = trackedCell.getRelatabelityFactor()
print("M: " + str(motgherID) + " --> " + "D: " + str(doughterID))
pr... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,606 | Klas96/YeastTrack | refs/heads/master | /Analysis/FitExponential.py | import numpy as np
import scipy.optimize as op
from matplotlib import pyplot as plt
def func(x,const,rate):
return(const*np.exp(rate*x))
def fitExponential(array):
print(len(array))
fx = np.array(range(len(array)))
fy = np.array(array)
popt, pcov = op.curve_fit(func,fx,fy,p0=(fx[0], 0.1),maxfev =... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,607 | Klas96/YeastTrack | refs/heads/master | /Analysis/getDevisionFrameNum.py | #Returnsfirst Whi5 activation Index
def getDevisionFrameNum(doughter):
thresh = 0.30
cellWhi5Trace = doughter.getWhi5Trace()
index = 0
for whi5 in cellWhi5Trace:
index = index + 1
if whi5 > thresh:
index = index+doughter.getDetectionFrameNum()
return(index)
| {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,608 | Klas96/YeastTrack | refs/heads/master | /UserInterface/getClassImage.py | import cv2
import numpy as np
from UserInterface.getMaskImage import getMaskImage
from UserInterface.rescaleImageToUser import rescaleImageToUser
#color all the blobs with individual colors
#Text size for all cells
def getClassImage(listOfObjects,sizeX,sizeY):
colorSet = [(0,7,100),(32,107,203),(237, 120, 255),(2... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,609 | Klas96/YeastTrack | refs/heads/master | /Segmentation/getWHI5Activity.py | import cv2
import numpy as np
#Pre1: Keypoint All cells
#Pre2: Mask Frame With cells
#Pre3: Florecent Chanell
#Ret: Array with numberes corresponding to WHI5 Activity
def getWHI5ActivityNorm(countour, floChan):
#convexHull = cv2.ConvexHull2(countour,orientation=CV_CLOCKWISE, return_points=0)
convexHull = cv2.c... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,610 | Klas96/YeastTrack | refs/heads/master | /Segmentation/ConectedComponents.py | import cv2
from Segmentation.getWHI5Activity import getWHI5Activity
from Segmentation.cellInstance import cellInstance
def conectedCompontents(maskImg,floImg):
conectedCompontents, hirearchy = cv2.findContours(maskImg, cv2.RETR_CCOMP, cv2.CHAIN_APPROX_SIMPLE)
cellInstanses = []
for cnt in conectedComponten... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,611 | Klas96/YeastTrack | refs/heads/master | /Analysis/AddBudsToMother.py | from Anlysis.getDevisionFrameNum import getDevisionFrameNum
#Pre1: Mother Tracked CellTrackel
#Pre2: list Doughters
def addBudsToMother(mother,doughters):
sizeTrace = mother.getSizesTraceFromBegining()
for dought in doughters:
deviNum = getDevisionFrameNum(dought)
dughtSzTrc = dought.getSizesTr... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,612 | Klas96/YeastTrack | refs/heads/master | /main.py | #Yeast Track Main
import cv2
#from UserInterface.videoClass import Video
from UserInterface.LoadData.LoadData import getVideo
from UserInterface.LoadData.LoadtifFile import imortTiftoVideoNew
from UserInterface.Controls import Controls
from UserInterface.LoadData.ImportThreeZoomLevel import loadThreeZoomLevel
from User... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,613 | Klas96/YeastTrack | refs/heads/master | /UserInterface/rescaleImageToUser.py | import cv2
#Scale image For Visual Apropriate Size
#Pre: image
#Ret: Scaled image
def rescaleImageToUser(img):
prop = getScaleProprtion(img.shape)
szX = int(img.shape[1]/prop)
szY = int(img.shape[0]/prop)
dim = (szX, szY)
img = cv2.resize(img, dim, interpolation = cv2.INTER_AREA)
return(img)
#... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,614 | Klas96/YeastTrack | refs/heads/master | /UserInterface/getIDImage.py | import cv2
import numpy as np
from UserInterface.rescaleImageToUser import rescaleImageToUser
from UserInterface.rescaleImageToUser import rescalePosToUser
from UserInterface.rescaleImageToUser import rescaleCounur
from Tracking.GetPositionFromContour import getPositionFromContour
#Pre1: list of objects
#Pre2: frame
d... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,615 | Klas96/YeastTrack | refs/heads/master | /Tracking/TrackedCell.py | import numpy as np
from Segmentation.cellInstance import cellInstance
class TrackedCell():
def __init__(self, cellInst = -1, cellID = -1,detectionFrameNum = -1):
self.cellTrace = []
self.cellTrace.append(cellInst)
self.cellID = cellID
self.detectionFrameNum = detectionFrameNum
self.motherID = None
self.r... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,616 | Klas96/YeastTrack | refs/heads/master | /Analysis/plotSize.py | from matplotlib import pyplot as plt
#from Anlysis.plotSize import plotTrackCellSizeBudToMother
from Anlysis.FitExponential import fitExponential
from Anlysis.FitExponential import plotDataWithExpo
from Anlysis.AddBudsToMother import addBudsToMother
from Anlysis.PlotTrackedCellsSize import plotTrackedCellsSize
#Pre1: ... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,617 | Klas96/YeastTrack | refs/heads/master | /UserInterface/LoadData/getCropCoordinates.py | posList = []
def onMouse(event, x, y, flags, param):
global posList
if event == cv2.EVENT_LBUTTONDOWN:
posList.append((x, y))
def getCropCoordinates(mats):
#Get last image
#Import Image Crop
cv2.imshow("SelectCropPos",mats[-2])
cv2.setMouseCallback("SelectCropPos",onMouse)
print(posL... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,618 | Klas96/YeastTrack | refs/heads/master | /Segmentation/OstuBinarizartion.py | import cv2
import numpy as np
from Segmentation.cellInstance import cellInstance
from Segmentation.getWHI5Activity import getWHI5Activity
from Segmentation.FilterDetection import filterDetections
from Segmentation.getThreshold import getTherholdImage
from Segmentation.Rescaling import rescaleImage
from Segmentation.Con... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,619 | Klas96/YeastTrack | refs/heads/master | /UserInterface/IncreasIntesity.py | import numpy as np
import cv2
#Pre: frame
#ret: Frame with higer intesity
def incFloIntens(img,intens):
intens = int(intens/10)
#Check number of colors
numCol = 3
intensImg = np.zeros((img.shape[0], img.shape[1], numCol), np.uint8)
for i in range(intens):
intensImg = cv2.add(intensImg,img)
... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,620 | Klas96/YeastTrack | refs/heads/master | /Segmentation/FilterDetection.py | import cv2
import numpy as np
#Pre: detections
#Ret: Filtered Detections
def filterDetections(cellInstances):
maxSize = 210
minSize = 15
filterdList = []
for cellInst in cellInstances:
size = cellInst.getSize()
if size < maxSize and size > minSize:
filterdList.append(cellIns... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,621 | Klas96/YeastTrack | refs/heads/master | /Segmentation/ThersholdingSegmentation.py | from Segmentation.Preprocessing import preprocess
from Segmentation.Preprocessing import preprocessFloImg
import cv2
from matplotlib import pyplot as plt
import numpy as np
from Segmentation.cellInstance import cellInstance
from Segmentation.getWHI5Activity import getWHI5Activity
from Segmentation.FilterDetection impor... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,622 | Klas96/YeastTrack | refs/heads/master | /UserInterface/LoadData/ImportThreeZoomLevel.py | from UserInterface.videoClass import Video
import cv2
def loadThreeZoomLevel():
zom0Path = "VideoData/tileScan2/tileScan2OptZ0.avi"
zom1Path = "VideoData/tileScan2/tileScan2OptZ1.avi"
zom2Path = "VideoData/tileScan2/tileScan2OptZ2.avi"
flo1Path = "VideoData/tileScan2/tileScan2Flo.avi"
zom0Cap = cv... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,623 | Klas96/YeastTrack | refs/heads/master | /Segmentation/LaplacianGausian.py | import cv2
from Segmentation.cellInstance import cellInstance
import numpy as np
from Segmentation.getWHI5Activity import getWHI5Activity
from Segmentation.FilterDetection import filterDetections
#from frameClass import rescale_frame
#LAP MEthoth for segmentation of yeast cells.
def laplacianGausian(frame):
optFra... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,624 | Klas96/YeastTrack | refs/heads/master | /UserInterface/LoadData/LoadtifFile.py | from UserInterface.videoClass import Video
import cv2
def imortTiftoVideo(filePath):
numChan = 2
numZoomLevles = 4
etval, mats = cv2.imreadmulti(filePath)
#8 images for each frame
#TODO Generalize
allFrames = []
for matIndex in range(0,len(mats),8):
frame = []
optChan = []
... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,625 | Klas96/YeastTrack | refs/heads/master | /UserInterface/LoadData/ConvertLiftoTif.py | import os
def convertLifToTif(inPath, OutPath):
cleanWorking = "rm ./VideoData/WorkingData/*"
os.system(cleanWorking)
series = 3
channel = 1
zoomLevel = 3
filePath = inPath
#Cropping Coordinates
ulx,uly = (0,0)
drx,dry = (512,512)
#Convering -lif file with bioformats
#Usin... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,626 | Klas96/YeastTrack | refs/heads/master | /UserInterface/LoadData/LoadData.py | import cv2
import numpy as np
from matplotlib import pyplot as plt
import os
from UserInterface.videoClass import Video
#from Tkinter import Tk
#from tkinter.filedialog import askopenfilename
#Displays the OME-XML metadata for a file on the console:
#showinf -omexml /path/to/file
#showinf -nopix /path/to/file
#os.pop... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,627 | Klas96/YeastTrack | refs/heads/master | /Analysis/VisulizeLinage.py | from matplotlib import pyplot as plt
from scipy.cluster import hierarchy
import numpy as np
import networkx as nx
from networkx.drawing.nx_agraph import graphviz_layout
import matplotlib.pyplot as plt
from Anlysis.visulizeLinNetworkX import plotNxTree
#import PyQt5
#from ete3 import Tree
#'from ete3 import TreeStyle
# ... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,628 | Klas96/YeastTrack | refs/heads/master | /Analysis/PlotTrackedCellsSize.py | from matplotlib import pyplot as plt
from Anlysis.getDevisionFrameNum import getDevisionFrameNum
def plotTrackedCellsSize(trackedCells):
for trCell in trackedCells:
deviNum = getDevisionFrameNum(trCell)
trace = trCell.getSizesTraceFromBegining()[0:deviNum]
plt.plot(range(len(trace)),trace)
| {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,629 | Klas96/YeastTrack | refs/heads/master | /Analysis/plotFunctions.py | from matplotlib import pyplot as plt
from Anlysis.plotSize import plotTrackCellSizeBudToMother
from Anlysis.VisulizeLinage import PlotLinageTree
def plotFunction(trackedCells):
cellToPlot = range(len(trackedCells))
#plotTrackCellSizeBudToMother(cellToPlot, trackedCells)
#PlotLinageTree(trackedCells)
pl... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,630 | Klas96/YeastTrack | refs/heads/master | /Tracking/GetPositionFromContour.py | import cv2
def getPositionFromContour(contour):
moments = cv2.moments(contour)
#TOOD Byt till funktioner ist??
cx = int(moments['m10']/moments['m00'])
cy = int(moments['m01']/moments['m00'])
position = (cx,cy)
return(position)
| {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,631 | Klas96/YeastTrack | refs/heads/master | /UserInterface/frameClass.py | from Segmentation.cellInstance import cellInstance
import cv2
import numpy as np
from Tracking.centroidTracker import CentroidTracker
from Segmentation.OstuBinarizartion import OtsuBinarization
from Segmentation.watershed import watershed
from Segmentation.cellInstance import cellInstance
from Segmentation.Laplacian... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,632 | Klas96/YeastTrack | refs/heads/master | /Segmentation/getThreshold.py | import cv2
from Segmentation.FilterDetection import filterDetections
import numpy as np
#Threshold Image that
#Pre: Frame objecet
#Ret: Threshold Image
def getTherholdImage(frame):
optFrame = frame.getScaledOptChan()
floFrame = frame.getScaledFloChan()
gaussian = cv2.GaussianBlur(optFrame, (3, 3), 0)
... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,633 | Klas96/YeastTrack | refs/heads/master | /Segmentation/Rescaling.py | import cv2
#Rescale for optimal analysis size
#What is this size??
def rescaleImage(img,portion):
width = int(img.shape[1] * portion)
height = int(img.shape[0] * portion)
dim = (width, height)
return cv2.resize(img, dim, interpolation = cv2.INTER_AREA)
| {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,634 | Klas96/YeastTrack | refs/heads/master | /Tracking/filterTracking.py | #Pre: List of trackedCells
#Ret: Filterd list with trackedCells
def filterTrackedCells(trackedCells):
trackedCells = filterByOpserLen(trackedCells)
trackedCells = filterByMeanSize(trackedCells)
return(trackedCells)
def filterByOpserLen(trackedCells):
filterdList = []
#Filter by observation length... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,635 | Klas96/YeastTrack | refs/heads/master | /Segmentation/ParmeterizeImagegs.py | import numpy as np
import cv2
import pandas as pd
from scipy import ndimage as nd
import gc
def imagesToPrameter(optImgArr,floImgArr,maskImgArr = []):
#Save Originals to DataFrame
#img2 = img.reshape(-1)
#print("loading Images")
optImgReArr = []
floImgReArr = []
for imgIndex in range(len(optIm... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,636 | Klas96/YeastTrack | refs/heads/master | /Segmentation/Denoising.py | #TODO
#Write Method for denoising
def denoiseImage(img):
pass
| {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,637 | Klas96/YeastTrack | refs/heads/master | /UserInterface/videoClass.py | from UserInterface.frameClass import Frame
#from Segmentation.cellInstance import cellInstance
import cv2
import numpy as np
from Tracking.centroidTracker import CentroidTracker
from UserInterface.getIDImage import getIDImage
from UserInterface.getClassImage import getClassImage
from Tracking.findLineage import findLi... | {"/UserInterface/Controls.py": ["/UserInterface/UpdateFrame.py"], "/Tracking/centroidTracker.py": ["/Segmentation/cellInstance.py", "/Tracking/TrackedCell.py"], "/UserInterface/LoadData/LoadChannels.py": ["/UserInterface/videoClass.py"], "/UserInterface/UpdateFrame.py": ["/UserInterface/IncreasIntesity.py"], "/Tracking... |
17,639 | amaralunao/api_proxy | refs/heads/master | /api/constants.py | HOST = "https://demo.calendar42.com/api/v2/"
API_TOKEN = "Token 5426034f09d8463684d5de9beea93ea34d214b65"
headers = {"Accept": "application/json",
"Content-type": "application/json",
"Authorization": "{Token}".format(Token=API_TOKEN)}
| {"/api/views.py": ["/api/utils.py"], "/api/utils.py": ["/api/constants.py"], "/api/urls.py": ["/api/views.py"]} |
17,640 | amaralunao/api_proxy | refs/heads/master | /api/views.py | from django.shortcuts import render
from .utils import get_event_title, get_event_names
from django.views.decorators.cache import cache_page
@cache_page(60 * 4.2)
def events_with_subscriptions(request, event_id):
title = get_event_title(event_id)
names = get_event_names(event_id)
events_with_names_dict =... | {"/api/views.py": ["/api/utils.py"], "/api/utils.py": ["/api/constants.py"], "/api/urls.py": ["/api/views.py"]} |
17,641 | amaralunao/api_proxy | refs/heads/master | /api/utils.py | import requests
from .constants import HOST, API_TOKEN, headers
def get_event(event_id):
url = HOST+"events/{EVENT_ID}/".format(EVENT_ID=event_id)
return requests.get(url, headers=headers).json()
def get_event_subscriptions(event_id):
url = HOST+"event-subscriptions/?event_ids=[{EVENT_ID}]".format(EVEN... | {"/api/views.py": ["/api/utils.py"], "/api/utils.py": ["/api/constants.py"], "/api/urls.py": ["/api/views.py"]} |
17,642 | amaralunao/api_proxy | refs/heads/master | /api/urls.py | from django.conf.urls import url
from .views import events_with_subscriptions
urlpatterns = [
url(r'^events-with-subscriptions/(?P<event_id>[0-9a-fA-F_]+)/*',
events_with_subscriptions, name='events-with-subscriptions'),
]
| {"/api/views.py": ["/api/utils.py"], "/api/utils.py": ["/api/constants.py"], "/api/urls.py": ["/api/views.py"]} |
17,644 | wissemkhrarib/Bookstore---Django | refs/heads/main | /books/admin.py | from django.contrib import admin
from .models import Book, Author
class BookAdmin(admin.ModelAdmin):
list_display = ('name', 'serie_number', 'author')
class AuthorAdmin(admin.ModelAdmin):
list_display = ('firstname', 'email')
admin.site.register(Book, BookAdmin)
admin.site.register(Author, AuthorAdmin)
| {"/books/admin.py": ["/books/models.py"]} |
17,645 | wissemkhrarib/Bookstore---Django | refs/heads/main | /books/urls.py | from django.urls import path
from books import views
urlpatterns = [
path('', views.index),
path('new', views.new)
]
| {"/books/admin.py": ["/books/models.py"]} |
17,646 | wissemkhrarib/Bookstore---Django | refs/heads/main | /books/models.py | from django.db import models
class Author(models.Model):
firstname = models.CharField(max_length=255)
lastname = models.CharField(max_length=255)
email = models.EmailField()
def __str__(self):
return self.firstname+' '+self.lastname
class Book(models.Model):
name = models.CharField(max_... | {"/books/admin.py": ["/books/models.py"]} |
17,647 | Syvokobylenko/ProjectAutoHome | refs/heads/master | /gpio.py | class switchObject():
def __init__(self, channel):
import machine
self.pin = machine.Pin(channel, machine.Pin.OUT)
self.state = "1"
self.switch()
def switch(self):
if bool(int(self.state)):
print("Turning OFF")
self.pin.on()
self.state ... | {"/socket_server.py": ["/TCP_socket_object.py"], "/boot.py": ["/read_file.py", "/TCP_socket_object.py"], "/esp8266 (1).py": ["/gpio.py", "/read_file.py", "/TCP_socket_object.py"]} |
17,648 | Syvokobylenko/ProjectAutoHome | refs/heads/master | /TCP_socket_object.py | class createConnection():
def __init__(self):
import socket
self.socket = socket.socket()
def startServer(self,port,max_con):
self.port = port
self.socket.bind(('',self.port))
self.socket.listen(max_con)
def client(self,IP,port):
self.IP = IP
self.po... | {"/socket_server.py": ["/TCP_socket_object.py"], "/boot.py": ["/read_file.py", "/TCP_socket_object.py"], "/esp8266 (1).py": ["/gpio.py", "/read_file.py", "/TCP_socket_object.py"]} |
17,649 | Syvokobylenko/ProjectAutoHome | refs/heads/master | /esp8266.py | import socket, machine
def do_connect(ESSID,password):
import network
network.WLAN(network.AP_IF).active(False)
sta_if = network.WLAN(network.STA_IF)
if not sta_if.isconnected():
print("connecting to network...")
sta_if.active(True)
sta_if.connect(ESSID, password)
while not sta_if.isconnected():
pass
... | {"/socket_server.py": ["/TCP_socket_object.py"], "/boot.py": ["/read_file.py", "/TCP_socket_object.py"], "/esp8266 (1).py": ["/gpio.py", "/read_file.py", "/TCP_socket_object.py"]} |
17,650 | Syvokobylenko/ProjectAutoHome | refs/heads/master | /socket_server.py | from TCP_socket_object import createConnection
def node(con):
while True:
pc, pc_IP = con.socket.accept()
print("New connection:", pc_IP)
while True:
try:
print(con.recieve(None,10,pc))
except ConnectionResetError:
print("Connection lo... | {"/socket_server.py": ["/TCP_socket_object.py"], "/boot.py": ["/read_file.py", "/TCP_socket_object.py"], "/esp8266 (1).py": ["/gpio.py", "/read_file.py", "/TCP_socket_object.py"]} |
17,651 | Syvokobylenko/ProjectAutoHome | refs/heads/master | /boot.py | import read_file, TCP_socket_object, wifi_connect, machine, time
ipconfig = wifi_connect.do_connect(*read_file.credentialsRead("wifi.ini"))
con = TCP_socket_object.createConnection()
con.client(ipconfig[3],2198)
pin = machine.Pin(0, machine.Pin.IN)
while True:
if not pin.value():
con.send('1')
ti... | {"/socket_server.py": ["/TCP_socket_object.py"], "/boot.py": ["/read_file.py", "/TCP_socket_object.py"], "/esp8266 (1).py": ["/gpio.py", "/read_file.py", "/TCP_socket_object.py"]} |
17,652 | Syvokobylenko/ProjectAutoHome | refs/heads/master | /read_file.py | def credentialsRead(filename):
file = open(filename,"r")
f = file.read()
f = f.split("\n")
credentials = []
for line in f:
credentials.append(line)
file.close()
return credentials
| {"/socket_server.py": ["/TCP_socket_object.py"], "/boot.py": ["/read_file.py", "/TCP_socket_object.py"], "/esp8266 (1).py": ["/gpio.py", "/read_file.py", "/TCP_socket_object.py"]} |
17,653 | Syvokobylenko/ProjectAutoHome | refs/heads/master | /esp8266 (1).py | import gpio, read_file, TCP_socket_object, wifi_connect
wifi_connect.do_connect(*read_file.credentialsRead("wifi.ini"))
GPIO0Handler = gpio.switchObject(0)
while True:
data, addr = TCP_socket_object.server(2198)
print ("Got connection from" + str(addr))
data.settimeout(5)
while True:
try:
if not bool(int(dat... | {"/socket_server.py": ["/TCP_socket_object.py"], "/boot.py": ["/read_file.py", "/TCP_socket_object.py"], "/esp8266 (1).py": ["/gpio.py", "/read_file.py", "/TCP_socket_object.py"]} |
17,654 | Syvokobylenko/ProjectAutoHome | refs/heads/master | /inputsocket.py | import socket, time
class connection:
def __init__(self, IP, port):
self.IP = IP
self.port = port
self.startConnection()
def startConnection(self):
self.s = socket.socket()
try:
self.s.connect((self.IP, self.port))
except(KeyboardInterrupt):
exit
def sendData(self, state):
try:
self.s.send(... | {"/socket_server.py": ["/TCP_socket_object.py"], "/boot.py": ["/read_file.py", "/TCP_socket_object.py"], "/esp8266 (1).py": ["/gpio.py", "/read_file.py", "/TCP_socket_object.py"]} |
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