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tonynzh2
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afdb6

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protein-structure

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History: 5594 commits

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Publish incremental recovery InterPro evidence

879a757 verified 5 minutes ago

alphafill
AlphaFill remains stopped; all closed result archives preserved and uploaded 4 days ago
alphafill_20260930
Publish optional AlphaFill geometry workflow and HPC task ownership 7 days ago
annotations
Publish closed all-AFDB InterPro results and manifests 7 minutes ago
audits
Review AlphaProtein Novo supplementary data processing for GPBridge pretraining 1 day ago
datasets
First sequence-first M-CSA function-supported endpoint release about 16 hours ago
enzymm
Record verified official762 HPC handoff publication about 14 hours ago
evaluations
Back up completed all-atom checkpoint evaluation 5 days ago
experiments
Proposed backbone-leading modality schedules and teacher-clock simulation; no training change about 19 hours ago
ligand_pairs_20260930
Publish optional AlphaFill geometry workflow and HPC task ownership 7 days ago
ligands
Publish optional AlphaFill geometry workflow and HPC task ownership 7 days ago
oracle
HPC GO diagnostic scores and progress 1 day ago
queries
Publish flexible motif query recovery and runnable inputs 5 days ago
recovery
Publish incremental recovery InterPro evidence 5 minutes ago
reports
Update collaborator report with research roadmap and methods-first explanations 5 days ago
results
Publish 1125 closed original and recovery PDB motif searches about 22 hours ago
retrieval
Add geometry-only motif plus pocket web query bundle and catalog audit 2 days ago
shards
Upload missing original-cluster coordinate shards for full HPC dataset access 7 days ago
validation
Upload validation/local_handoff_20261001/coordinate_upload_status.json with huggingface_hub 7 days ago
validation_20260930
Repair QC finalization hang after successful output; update measured HPC progress 7 days ago
.gitattributes

6.86 kB
First sequence-first M-CSA function-supported endpoint release about 16 hours ago
HPC_LIGAND_DATASET_HANDOVER.md

3.09 kB
Publish executable full-QC workflow using original HPC312 / local171 ownership 7 days ago
HPC_RESULTS_UPLOAD.md

5.07 kB
Add completed HPC result upload instructions 11 days ago
HPC_VALIDATION_HANDOVER.md

11.9 kB
Point HPC to the explicitly authorized remaining-local QC wave 7 days ago
MCSA_COFACTOR_VALIDATION.md

8.93 kB
Publish ligand-aware HPC dataset handover and 864 reference tasks 8 days ago
MOTIF_RESULTS_README.md

18.8 kB
Add collaborator guide to motif hits, native sequences and coordinates 2 days ago
README.md

4.61 kB
Publish optional AlphaFill geometry workflow and HPC task ownership 7 days ago
SHARD_ALLOCATION.md

4.06 kB
Add completed HPC result upload instructions 11 days ago
completed_shards.json

746 Bytes
Update local search completion: 171/483 shards 10 days ago
hpc_assigned_shards.txt

1.25 kB
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 11 days ago
local_active_shards.txt

101 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 11 days ago
local_completed_shards.txt

403 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 11 days ago
local_excluded_shards.txt

574 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 11 days ago
local_planned_shards.txt

70 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 11 days ago
local_reserved_shards.txt

171 Bytes
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 11 days ago
local_search_progress.json

4.66 kB
Update local search completion: 171/483 shards 8 days ago
manifest.jsonl

54.1 kB
Upload manifest.jsonl with huggingface_hub 12 days ago
motifs_v2.tar.gz

67.4 MB
xet

Upload motifs_v2.tar.gz with huggingface_hub 12 days ago
remaining_shards.txt

1.25 kB
Update local search completion: 171/483 shards 10 days ago
search_snapshot.json

801 Bytes
Upload search_snapshot.json with huggingface_hub 12 days ago
shard_assignment.json

18.1 kB
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 11 days ago
shard_assignments.tsv

10.2 kB
Reserve 171 original-cluster shards and assign 312 exclusively to HPC 11 days ago
upload_status.json

3.89 kB
Upload upload_status.json with huggingface_hub 11 days ago