BioBench: A Bioinformatics Code Reasoning Benchmark
📑 Paper | 🌐 Project Page | 💾 Released Resources | 📦 Repo
This is the synthesized BioBench-Genomics dataset, designed for training LLMs on bioinformatics reasoning tasks.
Dataset
| Dataset | Link |
|---|---|
| BioBench-Genomics | 🤗 |
Models
| Base Model / Training | BioBench | BioBench++ | ||
|---|---|---|---|---|
| Stage 1 | Stage 2 | Stage 1 | Stage 2 | |
| Qwen 2.5 7B Coder | 🤗 | 🤗 | 🤗 | 🤗 |
Introduction
BioBench transforms bioinformatics code patterns into natural language Chain-of-Thought rationales. We use a fully LLM-based approach for synthesizing all the desired responses using Qwen2.5-72B-Instruct, as it excels at scientific reasoning with competitive cost compared to other advanced LLMs.
*Due to collaborator compliance requirements, we only release the Genomics subset (this page) of the full BioBench dataset.
License
The license for this dataset is other.