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BioGen: Genomic Data Synthesis Framework
📑 Paper | 🌐 Project Page | 💾 Released Resources | 📦 Repo
We release the raw genomic sequences for our BioGen-Genome dataset, adopted from the original sequences in NCBI GenBank database.
The data format for each line in the genome_sequences_filtered.jsonl is as follows:
{
"sequence_id": <the unique identifier for the genomic sequence>,
"organism": <the source organism name>,
"sequence": <the nucleotide sequence string>,
"annotations": [
{
"feature_type": <gene, CDS, rRNA, etc.>,
"location": <start-end positions>,
"product": <protein or RNA product name>
},
...
],
"source": <the source database reference>,
"accession": <GenBank accession number>,
"meta": <additional metadata about the sequence>
}
Some sequences have been filtered based on quality metrics and length constraints.
*Note: This dataset contains curated genomic sequences from NCBI GenBank for research purposes.
License
The license for this dataset is Public Domain.
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