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BioMed-ProteinSeq: Protein Structure Analysis Pipeline
📑 Paper | 🌐 Project Page | 💾 Released Resources | 📦 Repo
We release the raw protein sequence data for our BioMed-ProteinSeq dataset, sourced from the UniProt reference proteomes database maintained by the UniProt Consortium.
The data format for each entry in the protein_sequences_raw.jsonl is as follows:
{
"sequence_id": <UniProt accession ID>,
"protein_name": <name of the protein>,
"organism": <source organism>,
"sequence": <amino acid sequence>,
"length": <sequence length>,
"function_annotation": <functional description>,
"go_terms": [<list of Gene Ontology terms>],
"meta": <additional metadata from UniProt>
}
Some entries may have incomplete annotations due to varying levels of experimental characterization in the source database.
*Note: This raw dataset contains curated protein sequences that have been filtered for quality and completeness from the original UniProt release.
License
The license for this dataset is CC-BY-4.0.
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