BioSeq: Genomic Sequence Analysis Pipeline 📑 Paper | 🌐 Project Page | 💾 Released Resources | 📦 Repo This is the resource page for our BioSeq genomic dataset collection on HuggingFace. Dataset |Dataset|Link| |-|-| |BioSeq-Genomic-Annotated|🤗| Please also check the raw data before annotation enhancement: toolevalxm/BioSeq-Genomic-Raw. Models Base Model / Training BioSeq BioSeq++ Stage 1 Stage 2 Stage 1 Stage 2 Mistral 7B 🤗 🤗 🤗 🤗 Gemma 2 9B 🤗 🤗 🤗 🤗 Introduction While genomic sequences provide fundamental biological information, automated annotation remains challenging due to: 1) Complex regulatory elements that span large genomic regions; 2) Species-specific variations that require extensive domain knowledge. Thus, we adopt a fully LLM-based approach for enhancing genomic annotations using Mistral-7B-Instruct, as it demonstrates strong performance on biomedical text understanding at an accessible computational cost. *Due to institutional data sharing agreements, we only release the RefSeq-derived subset (this page) of the full dataset.

License

The license for this dataset is Apache-2.0.