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MedGen: Clinical Data Synthesis for Medical NLP
📑 Paper | 🌐 Project Page | 💾 Released Resources | 📦 Repo
We release the raw clinical notes data for our MedGen project, derived from the MIMIC-III clinical database maintained by PhysioNet.
The data format for each line in the clinical_notes_processed.jsonl is as follows:
{
"note_id": <unique identifier for the clinical note>,
"note_type": <type of clinical note: discharge summary, radiology report, etc.>,
"text": <de-identified clinical note text>,
"entities": [
{
"entity": <medical entity>,
"type": <entity type: condition, medication, procedure>
},
...
],
"source": <source database identifier>,
"category": <clinical specialty category>
}
*Note: All data has been de-identified following HIPAA Safe Harbor guidelines. Original patient information has been removed or replaced with synthetic equivalents.
License
The license for this dataset is PhysioNet Credentialed Health Data License 1.5.0.
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