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MedText-Clinical-Processed

📑 Paper    |    🌐 Project Page    |    💾 Released Resources    |    📦 Repo

This is the processed version of MedText-Clinical dataset, containing structured medical entities and relations extracted using BiomedBERT-Large.

Dataset

Dataset Link
MedText-Clinical-Processed 🤗

Please also check the raw data: toolevalxm/MedText-Clinical-Raw.

Models Used

  • BiomedBERT-Large for entity extraction
  • Clinical-Longformer for relation classification

Introduction

We use a pipeline approach combining BiomedBERT-Large for named entity recognition and Clinical-Longformer for relation extraction. The processing extracts medical concepts (diseases, medications, procedures) and their relationships from raw clinical notes.

*Due to licensing requirements, we only release the de-identified subset of the full dataset.