body_hash stringlengths 64 64 | body stringlengths 23 109k | docstring stringlengths 1 57k | path stringlengths 4 198 | name stringlengths 1 115 | repository_name stringlengths 7 111 | repository_stars float64 0 191k | lang stringclasses 1
value | body_without_docstring stringlengths 14 108k | unified stringlengths 45 133k |
|---|---|---|---|---|---|---|---|---|---|
59302cb71ef1169f6f174cd91f58303c62f870619ddc1ab7f93fa2d0164ddb22 | @property
def next_lesson(self):
'\n Evaluate what lesson is the next on curriculum. Iterate\n through the list of lessons for today. Compare the current\n time with each lesson start time, return the upcoming one.\n Adjust for calendar timezone with 2hrs. If no lesson is found\n ... | Evaluate what lesson is the next on curriculum. Iterate
through the list of lessons for today. Compare the current
time with each lesson start time, return the upcoming one.
Adjust for calendar timezone with 2hrs. If no lesson is found
for today, iterate over the entire sorted curriculum and return
the first lesson tha... | source/schedule.py | next_lesson | gustavakerstrom99/RobBotTheRobot | 0 | python | @property
def next_lesson(self):
'\n Evaluate what lesson is the next on curriculum. Iterate\n through the list of lessons for today. Compare the current\n time with each lesson start time, return the upcoming one.\n Adjust for calendar timezone with 2hrs. If no lesson is found\n ... | @property
def next_lesson(self):
'\n Evaluate what lesson is the next on curriculum. Iterate\n through the list of lessons for today. Compare the current\n time with each lesson start time, return the upcoming one.\n Adjust for calendar timezone with 2hrs. If no lesson is found\n ... |
592f6c6b42d75a45132eeff90d20ba2b7839c7022faa27ad0ad9b48efe71f776 | def aggregate_returns(returns: ReturnsSeries, start_dates: Sequence[datetime], end_dates: Sequence[datetime]) -> Sequence[float]:
'\n Aggregates returns using custom start dates and end dates.\n\n Parameters\n ----------\n returns: ReturnsSeries\n returns to be aggregated\n start_dates: Sequen... | Aggregates returns using custom start dates and end dates.
Parameters
----------
returns: ReturnsSeries
returns to be aggregated
start_dates: Sequence[datetime]
list of start dates for aggregations
end_dates: Sequence[datetime]
list of end dates for aggregations (of the same length as start_dates)
Returns... | qf_lib/common/utils/returns/custom_returns_aggregating.py | aggregate_returns | webclinic017/qf-lib | 198 | python | def aggregate_returns(returns: ReturnsSeries, start_dates: Sequence[datetime], end_dates: Sequence[datetime]) -> Sequence[float]:
'\n Aggregates returns using custom start dates and end dates.\n\n Parameters\n ----------\n returns: ReturnsSeries\n returns to be aggregated\n start_dates: Sequen... | def aggregate_returns(returns: ReturnsSeries, start_dates: Sequence[datetime], end_dates: Sequence[datetime]) -> Sequence[float]:
'\n Aggregates returns using custom start dates and end dates.\n\n Parameters\n ----------\n returns: ReturnsSeries\n returns to be aggregated\n start_dates: Sequen... |
0572d8c9bb9f768615d75ba0293692d957ea62c06b413c73fd54dd8f5287e1ee | def custom_series_aggregation(series: QFSeries, start_dates: Sequence[datetime], end_dates: Sequence[datetime], func: Callable) -> Sequence[float]:
'\n Aggregates returns using custom start dates and end dates.\n\n Parameters\n ----------\n series\n returns or prices to be aggregated\n start_d... | Aggregates returns using custom start dates and end dates.
Parameters
----------
series
returns or prices to be aggregated
start_dates
list of start dates for aggregations
end_dates
list of end dates for aggregations (of the same length as start_dates)
func
function to be called on each slice of the da... | qf_lib/common/utils/returns/custom_returns_aggregating.py | custom_series_aggregation | webclinic017/qf-lib | 198 | python | def custom_series_aggregation(series: QFSeries, start_dates: Sequence[datetime], end_dates: Sequence[datetime], func: Callable) -> Sequence[float]:
'\n Aggregates returns using custom start dates and end dates.\n\n Parameters\n ----------\n series\n returns or prices to be aggregated\n start_d... | def custom_series_aggregation(series: QFSeries, start_dates: Sequence[datetime], end_dates: Sequence[datetime], func: Callable) -> Sequence[float]:
'\n Aggregates returns using custom start dates and end dates.\n\n Parameters\n ----------\n series\n returns or prices to be aggregated\n start_d... |
8032f8024840cf97eda9a3a1a5193e3c4edd717ce8ea1c1abae4e67105521109 | def test_rucio_version(self):
'CLIENT(USER): Rucio version'
cmd = 'bin/rucio --version'
(exitcode, out, err) = execute(cmd)
nose.tools.assert_true(('rucio' in err)) | CLIENT(USER): Rucio version | lib/rucio/tests/test_bin_rucio.py | test_rucio_version | efajardo/rucio | 0 | python | def test_rucio_version(self):
cmd = 'bin/rucio --version'
(exitcode, out, err) = execute(cmd)
nose.tools.assert_true(('rucio' in err)) | def test_rucio_version(self):
cmd = 'bin/rucio --version'
(exitcode, out, err) = execute(cmd)
nose.tools.assert_true(('rucio' in err))<|docstring|>CLIENT(USER): Rucio version<|endoftext|> |
ec63e5a1c87503df6542c64428ccff144ed8489aa615cd24373ca88809f5ead8 | def test_rucio_ping(self):
'CLIENT(USER): Rucio ping'
cmd = ('rucio --host %s ping' % self.host)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd) | CLIENT(USER): Rucio ping | lib/rucio/tests/test_bin_rucio.py | test_rucio_ping | efajardo/rucio | 0 | python | def test_rucio_ping(self):
cmd = ('rucio --host %s ping' % self.host)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd) | def test_rucio_ping(self):
cmd = ('rucio --host %s ping' % self.host)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)<|docstring|>CLIENT(USER): Rucio ping<|endoftext|> |
48fa1cd187f11cc0c10d8e30845fba892cab61b9a1d7359f188acef51b17ca53 | def test_add_account(self):
'CLIENT(ADMIN): Add account'
tmp_val = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_val)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_equal(('Added new account: %s\n' % tmp_val), out) | CLIENT(ADMIN): Add account | lib/rucio/tests/test_bin_rucio.py | test_add_account | efajardo/rucio | 0 | python | def test_add_account(self):
tmp_val = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_val)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_equal(('Added new account: %s\n' % tmp_val), out) | def test_add_account(self):
tmp_val = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_val)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_equal(('Added new account: %s\n' % tmp_val), out)<|docstring|>CLIENT(ADMIN): Add account<... |
3a082d1a0780d2d20d4ac13f278b55c962a05aa5fd5a6aba2bff90bf0db5d15f | def test_whoami(self):
'CLIENT(USER): Rucio whoami'
cmd = 'rucio whoami'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_regexp_matches(out, re.compile('.*account.*')) | CLIENT(USER): Rucio whoami | lib/rucio/tests/test_bin_rucio.py | test_whoami | efajardo/rucio | 0 | python | def test_whoami(self):
cmd = 'rucio whoami'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_regexp_matches(out, re.compile('.*account.*')) | def test_whoami(self):
cmd = 'rucio whoami'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_regexp_matches(out, re.compile('.*account.*'))<|docstring|>CLIENT(USER): Rucio whoami<|endoftext|> |
e67038b7ea297f5e262d627f093d0a1355939d80ab204fabdb1d4d7e106bd043 | def test_add_identity(self):
'CLIENT(ADMIN): Add identity'
tmp_val = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_val)
(exitcode, out, err) = execute(cmd)
nose.tools.assert_equal(('Added new account: %s\n' % tmp_val), out)
cmd = ('rucio-admin identity add --account %s --typ... | CLIENT(ADMIN): Add identity | lib/rucio/tests/test_bin_rucio.py | test_add_identity | efajardo/rucio | 0 | python | def test_add_identity(self):
tmp_val = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_val)
(exitcode, out, err) = execute(cmd)
nose.tools.assert_equal(('Added new account: %s\n' % tmp_val), out)
cmd = ('rucio-admin identity add --account %s --type GSS --id example@example.co... | def test_add_identity(self):
tmp_val = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_val)
(exitcode, out, err) = execute(cmd)
nose.tools.assert_equal(('Added new account: %s\n' % tmp_val), out)
cmd = ('rucio-admin identity add --account %s --type GSS --id example@example.co... |
8c54298f96a6790957b063e18b514a42a2bc61ed3575082f9868e311c820573b | def test_del_identity(self):
'CLIENT(ADMIN): Test del identity'
tmp_acc = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_acc)
(exitcode, out, err) = execute(cmd)
cmd = ('rucio-admin identity add --account %s --type GSS --id example@example.com --email example@example.com' % tmp_a... | CLIENT(ADMIN): Test del identity | lib/rucio/tests/test_bin_rucio.py | test_del_identity | efajardo/rucio | 0 | python | def test_del_identity(self):
tmp_acc = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_acc)
(exitcode, out, err) = execute(cmd)
cmd = ('rucio-admin identity add --account %s --type GSS --id example@example.com --email example@example.com' % tmp_acc)
(exitcode, out, err) = exe... | def test_del_identity(self):
tmp_acc = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_acc)
(exitcode, out, err) = execute(cmd)
cmd = ('rucio-admin identity add --account %s --type GSS --id example@example.com --email example@example.com' % tmp_acc)
(exitcode, out, err) = exe... |
4ddcf926592e19633383f27044b11ba0f76e38d1bde6dbf31d82b264f7d831da | def test_attributes(self):
'CLIENT(ADMIN): Add/List/Delete attributes'
tmp_acc = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_acc)
(exitcode, out, err) = execute(cmd)
cmd = 'rucio-admin account add-attribute {0} --key test_attribute_key --value true'.format(tmp_acc)
(exitco... | CLIENT(ADMIN): Add/List/Delete attributes | lib/rucio/tests/test_bin_rucio.py | test_attributes | efajardo/rucio | 0 | python | def test_attributes(self):
tmp_acc = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_acc)
(exitcode, out, err) = execute(cmd)
cmd = 'rucio-admin account add-attribute {0} --key test_attribute_key --value true'.format(tmp_acc)
(exitcode, out, err) = execute(cmd)
print(out)... | def test_attributes(self):
tmp_acc = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_acc)
(exitcode, out, err) = execute(cmd)
cmd = 'rucio-admin account add-attribute {0} --key test_attribute_key --value true'.format(tmp_acc)
(exitcode, out, err) = execute(cmd)
print(out)... |
1ff36cd56a4683a6c01b885462477edd3e54a6f6b5b8f255f6960020d7dc8806 | def test_add_scope(self):
'CLIENT(ADMIN): Add scope'
tmp_scp = scope_name_generator()
tmp_acc = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_acc)
(exitcode, out, err) = execute(cmd)
cmd = ('rucio-admin scope add --account %s --scope %s' % (tmp_acc, tmp_scp))
print((self... | CLIENT(ADMIN): Add scope | lib/rucio/tests/test_bin_rucio.py | test_add_scope | efajardo/rucio | 0 | python | def test_add_scope(self):
tmp_scp = scope_name_generator()
tmp_acc = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_acc)
(exitcode, out, err) = execute(cmd)
cmd = ('rucio-admin scope add --account %s --scope %s' % (tmp_acc, tmp_scp))
print((self.marker + cmd))
(exitc... | def test_add_scope(self):
tmp_scp = scope_name_generator()
tmp_acc = account_name_generator()
cmd = ('rucio-admin account add %s' % tmp_acc)
(exitcode, out, err) = execute(cmd)
cmd = ('rucio-admin scope add --account %s --scope %s' % (tmp_acc, tmp_scp))
print((self.marker + cmd))
(exitc... |
e40873880388780f409e6f411bf7fef51d8590b8e6ce9bf6c36cba8e33709902 | def test_add_rse(self):
'CLIENT(ADMIN): Add RSE'
tmp_val = rse_name_generator()
cmd = ('rucio-admin rse add %s' % tmp_val)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_equal(('Added new RSE: %s\n' % tmp_val), out) | CLIENT(ADMIN): Add RSE | lib/rucio/tests/test_bin_rucio.py | test_add_rse | efajardo/rucio | 0 | python | def test_add_rse(self):
tmp_val = rse_name_generator()
cmd = ('rucio-admin rse add %s' % tmp_val)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_equal(('Added new RSE: %s\n' % tmp_val), out) | def test_add_rse(self):
tmp_val = rse_name_generator()
cmd = ('rucio-admin rse add %s' % tmp_val)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_equal(('Added new RSE: %s\n' % tmp_val), out)<|docstring|>CLIENT(ADMIN): Add RSE<|endoftext|> |
2b7721d5a44a2e7aba3b3723e984665c088b9162caa65f3832218a8023219632 | def test_list_rses(self):
'CLIENT(ADMIN): List RSEs'
tmp_val = rse_name_generator()
cmd = ('rucio-admin rse add %s' % tmp_val)
(exitcode, out, err) = execute(cmd)
cmd = 'rucio-admin rse list'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_... | CLIENT(ADMIN): List RSEs | lib/rucio/tests/test_bin_rucio.py | test_list_rses | efajardo/rucio | 0 | python | def test_list_rses(self):
tmp_val = rse_name_generator()
cmd = ('rucio-admin rse add %s' % tmp_val)
(exitcode, out, err) = execute(cmd)
cmd = 'rucio-admin rse list'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_regexp_matches(out, re.com... | def test_list_rses(self):
tmp_val = rse_name_generator()
cmd = ('rucio-admin rse add %s' % tmp_val)
(exitcode, out, err) = execute(cmd)
cmd = 'rucio-admin rse list'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
nose.tools.assert_regexp_matches(out, re.com... |
64b8531d1f7301da044962158b30c30514b2b162024d54f17d46a6432446bdb0 | def test_upload(self):
'CLIENT(USER): Upload'
tmp_val = rse_name_generator()
cmd = ('rucio-admin rse add %s' % tmp_val)
(exitcode, out, err) = execute(cmd)
cmd = 'rucio upload'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out) | CLIENT(USER): Upload | lib/rucio/tests/test_bin_rucio.py | test_upload | efajardo/rucio | 0 | python | def test_upload(self):
tmp_val = rse_name_generator()
cmd = ('rucio-admin rse add %s' % tmp_val)
(exitcode, out, err) = execute(cmd)
cmd = 'rucio upload'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out) | def test_upload(self):
tmp_val = rse_name_generator()
cmd = ('rucio-admin rse add %s' % tmp_val)
(exitcode, out, err) = execute(cmd)
cmd = 'rucio upload'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)<|docstring|>CLIENT(USER): Upload<|endoftext|> |
16acb73837455cad33c396b812c077f16ccb933816532cc6fbfb3a6c9a1f25b2 | def test_download(self):
'CLIENT(USER): Download'
cmd = 'rucio download'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out) | CLIENT(USER): Download | lib/rucio/tests/test_bin_rucio.py | test_download | efajardo/rucio | 0 | python | def test_download(self):
cmd = 'rucio download'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out) | def test_download(self):
cmd = 'rucio download'
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)<|docstring|>CLIENT(USER): Download<|endoftext|> |
c6658e5d1feb389fe22e4c0ce76c71fe4341b33af64b0b903c4af743eb841277 | def test_upload_file(self):
'CLIENT(USER): Rucio upload files'
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
cmd = 'rucio -v upload --rse {0} --scope {1} {2} {3} {4}'.format(self.def_rse, self.user, tmp_file1, tmp_file2, tmp_file3)
print((self.marker + cm... | CLIENT(USER): Rucio upload files | lib/rucio/tests/test_bin_rucio.py | test_upload_file | efajardo/rucio | 0 | python | def test_upload_file(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
cmd = 'rucio -v upload --rse {0} --scope {1} {2} {3} {4}'.format(self.def_rse, self.user, tmp_file1, tmp_file2, tmp_file3)
print((self.marker + cmd))
(exitcode, out, err) = exe... | def test_upload_file(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
cmd = 'rucio -v upload --rse {0} --scope {1} {2} {3} {4}'.format(self.def_rse, self.user, tmp_file1, tmp_file2, tmp_file3)
print((self.marker + cmd))
(exitcode, out, err) = exe... |
67875a7960f80d31ea26fd94354b2fd6fb3a271038d785fc36e12ccdda373944 | def test_upload_file_guid(self):
'CLIENT(USER): Rucio upload file with guid'
tmp_file1 = file_generator()
tmp_guid = generate_uuid()
cmd = 'rucio -v upload --rse {0} --guid {1} --scope {2} {3}'.format(self.def_rse, tmp_guid, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) =... | CLIENT(USER): Rucio upload file with guid | lib/rucio/tests/test_bin_rucio.py | test_upload_file_guid | efajardo/rucio | 0 | python | def test_upload_file_guid(self):
tmp_file1 = file_generator()
tmp_guid = generate_uuid()
cmd = 'rucio -v upload --rse {0} --guid {1} --scope {2} {3}'.format(self.def_rse, tmp_guid, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
print(err)... | def test_upload_file_guid(self):
tmp_file1 = file_generator()
tmp_guid = generate_uuid()
cmd = 'rucio -v upload --rse {0} --guid {1} --scope {2} {3}'.format(self.def_rse, tmp_guid, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out)
print(err)... |
e6436865700c8a1db5b1563e4da22d7aab10c783e92bee0f70fbe24691fc132f | def test_upload_repeated_file(self):
'CLIENT(USER): Rucio upload repeated files'
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_file1_name = path.basename(tmp_file1)
cmd = 'rucio -v upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_... | CLIENT(USER): Rucio upload repeated files | lib/rucio/tests/test_bin_rucio.py | test_upload_repeated_file | efajardo/rucio | 0 | python | def test_upload_repeated_file(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_file1_name = path.basename(tmp_file1)
cmd = 'rucio -v upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(... | def test_upload_repeated_file(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_file1_name = path.basename(tmp_file1)
cmd = 'rucio -v upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(... |
3846db2c774b7909c377dda87ab2908deae938587d973b165494dd0541024786 | def test_upload_repeated_file_dataset(self):
'CLIENT(USER): Rucio upload repeated files to dataset'
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_file1_name = path.basename(tmp_file1)
tmp_file3_name = path.basename(tmp_file3)
tmp_dsn = ((self.user... | CLIENT(USER): Rucio upload repeated files to dataset | lib/rucio/tests/test_bin_rucio.py | test_upload_repeated_file_dataset | efajardo/rucio | 0 | python | def test_upload_repeated_file_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_file1_name = path.basename(tmp_file1)
tmp_file3_name = path.basename(tmp_file3)
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio -... | def test_upload_repeated_file_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_file1_name = path.basename(tmp_file1)
tmp_file3_name = path.basename(tmp_file3)
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio -... |
63f43aafc5958e1b84b8ce40761745978a33b5cd23d0d37d988bab8631a7be0d | def test_upload_file_dataset(self):
'CLIENT(USER): Rucio upload files to dataset'
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_file1_name = path.basename(tmp_file1)
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio -v upload -... | CLIENT(USER): Rucio upload files to dataset | lib/rucio/tests/test_bin_rucio.py | test_upload_file_dataset | efajardo/rucio | 0 | python | def test_upload_file_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_file1_name = path.basename(tmp_file1)
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio -v upload --rse {0} --scope {1} {2} {3} {4} {5}'.format(... | def test_upload_file_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_file1_name = path.basename(tmp_file1)
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio -v upload --rse {0} --scope {1} {2} {3} {4} {5}'.format(... |
543c71b51d4f04ad35fa22504d7a5a3f248d3360dc7f9460b804f501b004f0a5 | def test_upload_adds_md5digest(self):
'CLIENT(USER): Upload Checksums'
filename = file_generator()
tmp_file1_name = path.basename(filename)
file_md5 = md5(filename)
cmd = 'rucio -v upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, filename)
print((self.marker + cmd))
(exitcod... | CLIENT(USER): Upload Checksums | lib/rucio/tests/test_bin_rucio.py | test_upload_adds_md5digest | efajardo/rucio | 0 | python | def test_upload_adds_md5digest(self):
filename = file_generator()
tmp_file1_name = path.basename(filename)
file_md5 = md5(filename)
cmd = 'rucio -v upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, filename)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
... | def test_upload_adds_md5digest(self):
filename = file_generator()
tmp_file1_name = path.basename(filename)
file_md5 = md5(filename)
cmd = 'rucio -v upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, filename)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
... |
f8895e87649d4d06cd5460a2364bbc3640005d04c0ad8c52ecde691c98802a6f | def test_create_dataset(self):
'CLIENT(USER): Rucio add dataset'
tmp_name = ((self.user + ':DSet') + rse_name_generator())
cmd = ('rucio add-dataset ' + tmp_name)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
nose.tools.assert_not_equal(re.search(('Added ' + ... | CLIENT(USER): Rucio add dataset | lib/rucio/tests/test_bin_rucio.py | test_create_dataset | efajardo/rucio | 0 | python | def test_create_dataset(self):
tmp_name = ((self.user + ':DSet') + rse_name_generator())
cmd = ('rucio add-dataset ' + tmp_name)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
nose.tools.assert_not_equal(re.search(('Added ' + tmp_name), out), None) | def test_create_dataset(self):
tmp_name = ((self.user + ':DSet') + rse_name_generator())
cmd = ('rucio add-dataset ' + tmp_name)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
nose.tools.assert_not_equal(re.search(('Added ' + tmp_name), out), None)<|docstring... |
80aee02280908a5fe52efeb03c6c47ac59e43913d0603a36152d491244a4f7b0 | def test_add_files_to_dataset(self):
'CLIENT(USER): Rucio add files to dataset'
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_dataset = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_fil... | CLIENT(USER): Rucio add files to dataset | lib/rucio/tests/test_bin_rucio.py | test_add_files_to_dataset | efajardo/rucio | 0 | python | def test_add_files_to_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_dataset = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_file2)
print((self.marker + cmd))
(ex... | def test_add_files_to_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_dataset = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_file2)
print((self.marker + cmd))
(ex... |
c08fde31b8628649e01a2dcf5dcdf9231d0dc3d15a3690186c63e422c6d5857e | def test_download_file(self):
'CLIENT(USER): Rucio download files'
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
cmd = 'rucio -v download --... | CLIENT(USER): Rucio download files | lib/rucio/tests/test_bin_rucio.py | test_download_file | efajardo/rucio | 0 | python | def test_download_file(self):
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
cmd = 'rucio -v download --dir /tmp {0}:{1}'.format(self.user, ... | def test_download_file(self):
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
cmd = 'rucio -v download --dir /tmp {0}:{1}'.format(self.user, ... |
94e95970e12c2aba32806636a0a576c041c636d3b4526bd5810cb2f631c6be90 | def test_download_succeeds_md5only(self):
'CLIENT(USER): Rucio download succeeds MD5 only'
filename = file_generator()
file_md5 = md5(filename)
filesize = stat(filename).st_size
lfn = {'name': filename[5:], 'scope': self.user, 'bytes': filesize, 'md5': file_md5}
self.replica_client.add_replicas(... | CLIENT(USER): Rucio download succeeds MD5 only | lib/rucio/tests/test_bin_rucio.py | test_download_succeeds_md5only | efajardo/rucio | 0 | python | def test_download_succeeds_md5only(self):
filename = file_generator()
file_md5 = md5(filename)
filesize = stat(filename).st_size
lfn = {'name': filename[5:], 'scope': self.user, 'bytes': filesize, 'md5': file_md5}
self.replica_client.add_replicas(files=[lfn], rse=self.def_rse)
rse_settings ... | def test_download_succeeds_md5only(self):
filename = file_generator()
file_md5 = md5(filename)
filesize = stat(filename).st_size
lfn = {'name': filename[5:], 'scope': self.user, 'bytes': filesize, 'md5': file_md5}
self.replica_client.add_replicas(files=[lfn], rse=self.def_rse)
rse_settings ... |
2dda0f28d0822e4de91e56b80f418882cdf1c3479d877a504d79fdd51e325e15 | def test_download_fails_badmd5(self):
'CLIENT(USER): Rucio download fails on MD5 mismatch'
filename = file_generator()
file_md5 = md5(filename)
filesize = stat(filename).st_size
lfn = {'name': filename[5:], 'scope': self.user, 'bytes': filesize, 'md5': '0123456789abcdef0123456789abcdef'}
self.re... | CLIENT(USER): Rucio download fails on MD5 mismatch | lib/rucio/tests/test_bin_rucio.py | test_download_fails_badmd5 | efajardo/rucio | 0 | python | def test_download_fails_badmd5(self):
filename = file_generator()
file_md5 = md5(filename)
filesize = stat(filename).st_size
lfn = {'name': filename[5:], 'scope': self.user, 'bytes': filesize, 'md5': '0123456789abcdef0123456789abcdef'}
self.replica_client.add_replicas(files=[lfn], rse=self.def_... | def test_download_fails_badmd5(self):
filename = file_generator()
file_md5 = md5(filename)
filesize = stat(filename).st_size
lfn = {'name': filename[5:], 'scope': self.user, 'bytes': filesize, 'md5': '0123456789abcdef0123456789abcdef'}
self.replica_client.add_replicas(files=[lfn], rse=self.def_... |
e68642f9823aeb8824305b60ea1b6d1fdc73b43edd7d2c4acde98e67b0d594b3 | def test_download_dataset(self):
'CLIENT(USER): Rucio download dataset'
tmp_file1 = file_generator()
tmp_dataset = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, e... | CLIENT(USER): Rucio download dataset | lib/rucio/tests/test_bin_rucio.py | test_download_dataset | efajardo/rucio | 0 | python | def test_download_dataset(self):
tmp_file1 = file_generator()
tmp_dataset = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)... | def test_download_dataset(self):
tmp_file1 = file_generator()
tmp_dataset = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)... |
30a0aab1b3473899ac81450fead0a0068ed0073b9602bf0bfa579792a992be95 | def test_create_rule(self):
'CLIENT(USER): Rucio add rule'
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
tmp_rse = rse_name_generator()
... | CLIENT(USER): Rucio add rule | lib/rucio/tests/test_bin_rucio.py | test_create_rule | efajardo/rucio | 0 | python | def test_create_rule(self):
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
tmp_rse = rse_name_generator()
cmd = 'rucio-admin rse add {0}... | def test_create_rule(self):
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
tmp_rse = rse_name_generator()
cmd = 'rucio-admin rse add {0}... |
0f4f4afd8d454aeb425e73e230dfa88fc056f134271ceddf3b5f19beb8b0afc9 | def test_delete_rule(self):
'CLIENT(USER): rule deletion'
self.account_client.set_account_limit('root', self.def_rse, (- 1))
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = ex... | CLIENT(USER): rule deletion | lib/rucio/tests/test_bin_rucio.py | test_delete_rule | efajardo/rucio | 0 | python | def test_delete_rule(self):
self.account_client.set_account_limit('root', self.def_rse, (- 1))
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err... | def test_delete_rule(self):
self.account_client.set_account_limit('root', self.def_rse, (- 1))
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err... |
3f8c099a61e5a6d3b495c3064894a667b12cc4b45634a99f35d6f03bcaeec41f | def test_add_file_twice(self):
'CLIENT(USER): Add file twice'
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
cmd = 'rucio upload --rse {0} --scope {1} {2}'.forma... | CLIENT(USER): Add file twice | lib/rucio/tests/test_bin_rucio.py | test_add_file_twice | efajardo/rucio | 0 | python | def test_add_file_twice(self):
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp... | def test_add_file_twice(self):
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp... |
301cf795bf90d38a853a291d61d9cde918ac89bc56244bf136ccfdb60b25f9d8 | def test_add_delete_add_file(self):
'CLIENT(USER): Add/Delete/Add'
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
cmd = 'rucio list-rules {0}... | CLIENT(USER): Add/Delete/Add | lib/rucio/tests/test_bin_rucio.py | test_add_delete_add_file | efajardo/rucio | 0 | python | def test_add_delete_add_file(self):
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
cmd = 'rucio list-rules {0}:{1} | grep {0}:{1} | cut -f1 ... | def test_add_delete_add_file(self):
tmp_file1 = file_generator()
cmd = 'rucio upload --rse {0} --scope {1} {2}'.format(self.def_rse, self.user, tmp_file1)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print(out, err)
cmd = 'rucio list-rules {0}:{1} | grep {0}:{1} | cut -f1 ... |
50984380c7403d97d546963963680c0774438bdeb2cbc716d3710edf523f902e | def test_attach_files_dataset(self):
'CLIENT(USER): Rucio attach files to dataset'
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rs... | CLIENT(USER): Rucio attach files to dataset | lib/rucio/tests/test_bin_rucio.py | test_attach_files_dataset | efajardo/rucio | 0 | python | def test_attach_files_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_dsn)
print((... | def test_attach_files_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_dsn)
print((... |
27ff7369e02cdcd0544987565c809db4dc032dbb67904be0857a20b6c8f82fd6 | def test_detach_files_dataset(self):
'CLIENT(USER): Rucio detach files to dataset'
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3} {4} {5}'.format(sel... | CLIENT(USER): Rucio detach files to dataset | lib/rucio/tests/test_bin_rucio.py | test_detach_files_dataset | efajardo/rucio | 0 | python | def test_detach_files_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3} {4} {5}'.format(self.def_rse, self.user, tmp_file1, tmp_file2, t... | def test_detach_files_dataset(self):
tmp_file1 = file_generator()
tmp_file2 = file_generator()
tmp_file3 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3} {4} {5}'.format(self.def_rse, self.user, tmp_file1, tmp_file2, t... |
5950111e81135d118d4f9d5d4dbd2eacb78bccfd7d10813e666a50451b06dfa8 | def test_attach_file_twice(self):
'CLIENT(USER): Rucio attach a file twice'
tmp_file1 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_dsn)
print((self.marker + cmd))
(exi... | CLIENT(USER): Rucio attach a file twice | lib/rucio/tests/test_bin_rucio.py | test_attach_file_twice | efajardo/rucio | 0 | python | def test_attach_file_twice(self):
tmp_file1 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_dsn)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print... | def test_attach_file_twice(self):
tmp_file1 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_dsn)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
print... |
570e92104c3e3e2fe1950c408386b10f4ac62a90864399e2cf08f9af22e2ffef | def test_detach_non_existing_file(self):
'CLIENT(USER): Rucio detach a non existing file'
tmp_file1 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_dsn)
print((self.marker + ... | CLIENT(USER): Rucio detach a non existing file | lib/rucio/tests/test_bin_rucio.py | test_detach_non_existing_file | efajardo/rucio | 0 | python | def test_detach_non_existing_file(self):
tmp_file1 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_dsn)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
... | def test_detach_non_existing_file(self):
tmp_file1 = file_generator()
tmp_dsn = ((self.user + ':DSet') + rse_name_generator())
cmd = 'rucio upload --rse {0} --scope {1} {2} {3}'.format(self.def_rse, self.user, tmp_file1, tmp_dsn)
print((self.marker + cmd))
(exitcode, out, err) = execute(cmd)
... |
05322c720401f1a738578fffb6fd9943118d246032a45264ab3c067fbea801af | def __init__(self) -> None:
'\n Instantiates the endpoint to update a unit in the database table unit.\n '
self.reqparser = reqparse.RequestParser()
self.reqparser.add_argument('symbol', required=True, type=str, location=['form', 'json'])
self.reqparser.add_argument('new_symbol', required=... | Instantiates the endpoint to update a unit in the database table unit. | Analytics/resources/units/update_unit.py | __init__ | thanosbnt/SharingCitiesDashboard | 4 | python | def __init__(self) -> None:
'\n \n '
self.reqparser = reqparse.RequestParser()
self.reqparser.add_argument('symbol', required=True, type=str, location=['form', 'json'])
self.reqparser.add_argument('new_symbol', required=False, type=str, location=['form', 'json'])
self.reqparser.add_arg... | def __init__(self) -> None:
'\n \n '
self.reqparser = reqparse.RequestParser()
self.reqparser.add_argument('symbol', required=True, type=str, location=['form', 'json'])
self.reqparser.add_argument('new_symbol', required=False, type=str, location=['form', 'json'])
self.reqparser.add_arg... |
52e532faacf5043e86ea22d5293723d74a107c7916716193c9e211818ddf28b2 | @jwt_required
def post(self) -> ({'message': str, 'symbol': str, 'description': str}, HTTPStatus):
"\n Fetches a specified unit instance from the database by its symbol and updates the symbol and/or the description\n :post:\n :arg symbol: Symbol string of the unit eg 'kg'\n :a... | Fetches a specified unit instance from the database by its symbol and updates the symbol and/or the description
:post:
:arg symbol: Symbol string of the unit eg 'kg'
:arg symbol: The new symbol string of the unit eg 'kg'
:arg new_description: The new description of the unit
:type symbol: ... | Analytics/resources/units/update_unit.py | post | thanosbnt/SharingCitiesDashboard | 4 | python | @jwt_required
def post(self) -> ({'message': str, 'symbol': str, 'description': str}, HTTPStatus):
"\n Fetches a specified unit instance from the database by its symbol and updates the symbol and/or the description\n :post:\n :arg symbol: Symbol string of the unit eg 'kg'\n :a... | @jwt_required
def post(self) -> ({'message': str, 'symbol': str, 'description': str}, HTTPStatus):
"\n Fetches a specified unit instance from the database by its symbol and updates the symbol and/or the description\n :post:\n :arg symbol: Symbol string of the unit eg 'kg'\n :a... |
e55db34744d6ffea4c024cac92f991ebd4a121e73b2b0d648e1c42ec0a27f242 | def getIdentifiers(self):
"Return a dictionary of related identifiers organized by branched entity id.\n\n Returns:\n (dict): {entityId: {'idType1': ids, 'idType1': ids}, ... }\n "
try:
return (self.__glyD['identifiers'] if self.__glyD['identifiers'] else {})
except Exceptio... | Return a dictionary of related identifiers organized by branched entity id.
Returns:
(dict): {entityId: {'idType1': ids, 'idType1': ids}, ... } | rcsb/exdb/branch/GlycanProvider.py | getIdentifiers | rcsb/py-rcsb_exdb | 0 | python | def getIdentifiers(self):
"Return a dictionary of related identifiers organized by branched entity id.\n\n Returns:\n (dict): {entityId: {'idType1': ids, 'idType1': ids}, ... }\n "
try:
return (self.__glyD['identifiers'] if self.__glyD['identifiers'] else {})
except Exceptio... | def getIdentifiers(self):
"Return a dictionary of related identifiers organized by branched entity id.\n\n Returns:\n (dict): {entityId: {'idType1': ids, 'idType1': ids}, ... }\n "
try:
return (self.__glyD['identifiers'] if self.__glyD['identifiers'] else {})
except Exceptio... |
79b4a7b8d5746524a07b984cb5cf8723c6c493f7346bb3450a27c23021d142cc | def update(self, cfgOb, fmt='json', indent=3):
'Update branched entity glycan accession mapping cache.\n\n Args:\n cfgObj (object): ConfigInfo() object instance\n\n Returns:\n (bool): True for success for False otherwise\n '
ok = False
try:
gU = GlycanUtils... | Update branched entity glycan accession mapping cache.
Args:
cfgObj (object): ConfigInfo() object instance
Returns:
(bool): True for success for False otherwise | rcsb/exdb/branch/GlycanProvider.py | update | rcsb/py-rcsb_exdb | 0 | python | def update(self, cfgOb, fmt='json', indent=3):
'Update branched entity glycan accession mapping cache.\n\n Args:\n cfgObj (object): ConfigInfo() object instance\n\n Returns:\n (bool): True for success for False otherwise\n '
ok = False
try:
gU = GlycanUtils... | def update(self, cfgOb, fmt='json', indent=3):
'Update branched entity glycan accession mapping cache.\n\n Args:\n cfgObj (object): ConfigInfo() object instance\n\n Returns:\n (bool): True for success for False otherwise\n '
ok = False
try:
gU = GlycanUtils... |
41330cf3b566d6b1bd716fa34fb9fd3a4be5d72f8b596b6d74f0a950b613c861 | def reload(self):
'Reload from the current cache file.'
ok = False
try:
self.__glyD = self.__reload(fmt='json', useCache=True)
ok = (self.__glyD is not None)
except Exception as e:
logger.exception('Failing with %s', str(e))
return ok | Reload from the current cache file. | rcsb/exdb/branch/GlycanProvider.py | reload | rcsb/py-rcsb_exdb | 0 | python | def reload(self):
ok = False
try:
self.__glyD = self.__reload(fmt='json', useCache=True)
ok = (self.__glyD is not None)
except Exception as e:
logger.exception('Failing with %s', str(e))
return ok | def reload(self):
ok = False
try:
self.__glyD = self.__reload(fmt='json', useCache=True)
ok = (self.__glyD is not None)
except Exception as e:
logger.exception('Failing with %s', str(e))
return ok<|docstring|>Reload from the current cache file.<|endoftext|> |
febf0e18fe24aaca08290d999809905d9807845c4393652ed2b429f1017a86cb | def decrypt_p7s(data: bytes) -> str:
'\n openssl cms -verify -in xxx.p7s -inform DER -noverify -outform DER -signer cert.pem -print\n '
p7 = crypto.load_pkcs7_data(crypto.FILETYPE_ASN1, BytesIO(data).getvalue())
bio_out = crypto._new_mem_buf()
_lib.PKCS7_verify(p7._pkcs7, _ffi.NULL, _ffi.NULL, _ff... | openssl cms -verify -in xxx.p7s -inform DER -noverify -outform DER -signer cert.pem -print | projects/data_lake/hadoop_airflow/data-pipeline/src/security/decrypt_data.py | decrypt_p7s | brunocampos01/job-challenges | 10 | python | def decrypt_p7s(data: bytes) -> str:
'\n \n '
p7 = crypto.load_pkcs7_data(crypto.FILETYPE_ASN1, BytesIO(data).getvalue())
bio_out = crypto._new_mem_buf()
_lib.PKCS7_verify(p7._pkcs7, _ffi.NULL, _ffi.NULL, _ffi.NULL, bio_out, _lib.PKCS7_NOVERIFY)
return crypto._bio_to_string(bio_out) | def decrypt_p7s(data: bytes) -> str:
'\n \n '
p7 = crypto.load_pkcs7_data(crypto.FILETYPE_ASN1, BytesIO(data).getvalue())
bio_out = crypto._new_mem_buf()
_lib.PKCS7_verify(p7._pkcs7, _ffi.NULL, _ffi.NULL, _ffi.NULL, bio_out, _lib.PKCS7_NOVERIFY)
return crypto._bio_to_string(bio_out)<|docstring... |
b65aa97b25d1c20f749dfb23d317240c380ade7e6e222959992677fcd861fe7f | def decrypt_p7b(data: bytes) -> str:
'\n openssl pkcs7 -inform DER -outform PEM -in xxx.p7b -print\n '
with tempfile.NamedTemporaryFile() as temp:
temp.write(data)
temp.flush()
return subprocess.check_output(['openssl', 'pkcs7', '-inform', 'DER', '-outform', 'PEM', '-in', temp.name... | openssl pkcs7 -inform DER -outform PEM -in xxx.p7b -print | projects/data_lake/hadoop_airflow/data-pipeline/src/security/decrypt_data.py | decrypt_p7b | brunocampos01/job-challenges | 10 | python | def decrypt_p7b(data: bytes) -> str:
'\n \n '
with tempfile.NamedTemporaryFile() as temp:
temp.write(data)
temp.flush()
return subprocess.check_output(['openssl', 'pkcs7', '-inform', 'DER', '-outform', 'PEM', '-in', temp.name, '-print']).decode('ISO-8859-1') | def decrypt_p7b(data: bytes) -> str:
'\n \n '
with tempfile.NamedTemporaryFile() as temp:
temp.write(data)
temp.flush()
return subprocess.check_output(['openssl', 'pkcs7', '-inform', 'DER', '-outform', 'PEM', '-in', temp.name, '-print']).decode('ISO-8859-1')<|docstring|>openssl pkc... |
e9ffcda5a903ae5bdc3487382ea4acacde34dd07ffa57946dcffc39cc8c74b7c | def set_mutations(cls, mutations_string, comparator):
'Requires string MutataionsString and MutationComparator'
cls.mutations = mutations_string.split(',')
if (not comparator.are_mutations_valid(cls.mutations)):
raise Exception(('Mutations are not valid %s' % cls.mutations_string)) | Requires string MutataionsString and MutationComparator | Asi/test/test_xml_definitions.py | set_mutations | phac-nml/asipython | 1 | python | def set_mutations(cls, mutations_string, comparator):
cls.mutations = mutations_string.split(',')
if (not comparator.are_mutations_valid(cls.mutations)):
raise Exception(('Mutations are not valid %s' % cls.mutations_string)) | def set_mutations(cls, mutations_string, comparator):
cls.mutations = mutations_string.split(',')
if (not comparator.are_mutations_valid(cls.mutations)):
raise Exception(('Mutations are not valid %s' % cls.mutations_string))<|docstring|>Requires string MutataionsString and MutationComparator<|endof... |
f04db59a67c3b9a595ac73be6ddbd5c706e1a5a92f8ace7972a92ebf9e03ba75 | def test_overlapping_ranges(self):
'Test overlapping ranges'
try:
transformer = XmlAsiTransformer(False)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_overlappingRanges.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_overLapping... | Test overlapping ranges | Asi/test/test_xml_definitions.py | test_overlapping_ranges | phac-nml/asipython | 1 | python | def test_overlapping_ranges(self):
try:
transformer = XmlAsiTransformer(False)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_overlappingRanges.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_overLapping_ranges:\n\t%s' % str(e))... | def test_overlapping_ranges(self):
try:
transformer = XmlAsiTransformer(False)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_overlappingRanges.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_overLapping_ranges:\n\t%s' % str(e))... |
2e03cd22ef77e8577119efd249827014ad4661a25d15038133b4817b8349a2f0 | def test_multiple_global_range_tags(self):
'Test multiple global range tags'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_multipleGlobalRangeTags.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e... | Test multiple global range tags | Asi/test/test_xml_definitions.py | test_multiple_global_range_tags | phac-nml/asipython | 1 | python | def test_multiple_global_range_tags(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_multipleGlobalRangeTags.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_multiple_g... | def test_multiple_global_range_tags(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_multipleGlobalRangeTags.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_multiple_g... |
30bb4a41c7ed0183c9fd7847e45082f9c06ee5d8f3732a68706066bb1a652189 | def test_missing_drug_class_name(self):
'Test missing drug class name'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassName.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
... | Test missing drug class name | Asi/test/test_xml_definitions.py | test_missing_drug_class_name | phac-nml/asipython | 1 | python | def test_missing_drug_class_name(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassName.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_missing_drug_cla... | def test_missing_drug_class_name(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassName.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_missing_drug_cla... |
2e9436bba0d36995ebbe9061c7dee9df03196fa9aa7e635c89de8b0ab24a9c15 | def test_missing_drug_class_name_alg_info(self):
'Test missing drug class name. Using get_algorithm_info'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassName.xml'), 'r')
transformer.get_algorithm_info(fd)
... | Test missing drug class name. Using get_algorithm_info | Asi/test/test_xml_definitions.py | test_missing_drug_class_name_alg_info | phac-nml/asipython | 1 | python | def test_missing_drug_class_name_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassName.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
print(('tes... | def test_missing_drug_class_name_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassName.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
print(('tes... |
f53ef8e024eb1c764b3373c9c65ea100e6603daa33b6a032263301faade3f58a | def test_missing_drug_class_drug_list(self):
'Test missing drug class drug list'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassDrugList.xml'), 'r')
transformer.transform(fd)
except AsiParsingException... | Test missing drug class drug list | Asi/test/test_xml_definitions.py | test_missing_drug_class_drug_list | phac-nml/asipython | 1 | python | def test_missing_drug_class_drug_list(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassDrugList.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_missing... | def test_missing_drug_class_drug_list(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassDrugList.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_missing... |
41ad89105213b4ecffd8720f5c5d13c5440a7cc7eb23e753a361d3e8f3ec65f4 | def test_missing_drug_class_drug_list_alg_info(self):
'Test missing drug class drug list. Using get_algorithm_info'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassDrugList.xml'), 'r')
transformer.get_algor... | Test missing drug class drug list. Using get_algorithm_info | Asi/test/test_xml_definitions.py | test_missing_drug_class_drug_list_alg_info | phac-nml/asipython | 1 | python | def test_missing_drug_class_drug_list_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassDrugList.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
pr... | def test_missing_drug_class_drug_list_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingDrugClassDrugList.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
pr... |
67623abc3cfad7fbd565563cf12bd6c20deb91de597ca2d5a8b2e33438b4d5e0 | def test_multiple_comment_definition_tags(self):
'Test multiple comment definition tags'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_multipleCommentDefinitionTags.xml'), 'r')
transformer.transform(fd)
except AsiPar... | Test multiple comment definition tags | Asi/test/test_xml_definitions.py | test_multiple_comment_definition_tags | phac-nml/asipython | 1 | python | def test_multiple_comment_definition_tags(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_multipleCommentDefinitionTags.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('tes... | def test_multiple_comment_definition_tags(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_multipleCommentDefinitionTags.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('tes... |
1aebea5d2b7f1387ad24ca24835412f0b69dd4aa4ced4d3463c34d2cab9f0b93 | def test_multiple_comment_definition_tags_alg_info(self):
'Test multiple comment definition tags. Using get_algorithm_info'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_multipleCommentDefinitionTags.xml'), 'r')
transfor... | Test multiple comment definition tags. Using get_algorithm_info | Asi/test/test_xml_definitions.py | test_multiple_comment_definition_tags_alg_info | phac-nml/asipython | 1 | python | def test_multiple_comment_definition_tags_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_multipleCommentDefinitionTags.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
... | def test_multiple_comment_definition_tags_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_multipleCommentDefinitionTags.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
... |
d6b82bf73909c679f8021ec14969b949a13a17000326e45cf552dabe77c82fca | def test_missing_level_definition_order(self):
'Test missing_level_definition_order'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionOrder.xml'), 'r')
transformer.transform(fd)
except AsiParsingEx... | Test missing_level_definition_order | Asi/test/test_xml_definitions.py | test_missing_level_definition_order | phac-nml/asipython | 1 | python | def test_missing_level_definition_order(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionOrder.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_mi... | def test_missing_level_definition_order(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionOrder.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_mi... |
38cf5d5155e945c38cbfec9ed214332b698e79b8347b429a4a573ee0df1bf637 | def test_missing_level_definition_order_alg_info(self):
'Test missing_level_definition_order. Using get_algorithm_info'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionOrder.xml'), 'r')
transformer.ge... | Test missing_level_definition_order. Using get_algorithm_info | Asi/test/test_xml_definitions.py | test_missing_level_definition_order_alg_info | phac-nml/asipython | 1 | python | def test_missing_level_definition_order_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionOrder.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
... | def test_missing_level_definition_order_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionOrder.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
... |
9fe72f65fb4582d993bbe614f4ebe43ac9063504684fea8e95ddde4f23fd0303 | def test_missing_level_definition_sir(self):
'Test missing_level_definition_sir'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionSIR.xml'), 'r')
transformer.transform(fd)
except AsiParsingExceptio... | Test missing_level_definition_sir | Asi/test/test_xml_definitions.py | test_missing_level_definition_sir | phac-nml/asipython | 1 | python | def test_missing_level_definition_sir(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionSIR.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_missin... | def test_missing_level_definition_sir(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionSIR.xml'), 'r')
transformer.transform(fd)
except AsiParsingException as e:
print(('test_missin... |
99eeba294fd7095720a4f4b438d5e3d75bd078e3e8ae30a2e4b1f1c4cb3dde52 | def test_missing_level_definition_sir_alg_info(self):
'Test missing_level_definition_sir. Using get_algorithm_info'
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionSIR.xml'), 'r')
transformer.get_algo... | Test missing_level_definition_sir. Using get_algorithm_info | Asi/test/test_xml_definitions.py | test_missing_level_definition_sir_alg_info | phac-nml/asipython | 1 | python | def test_missing_level_definition_sir_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionSIR.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
p... | def test_missing_level_definition_sir_alg_info(self):
try:
transformer = XmlAsiTransformer(self.validate_xml)
fd = open(os.path.join(self.module_path, 'test/data/HIVDB_missingLevelDefinitionSIR.xml'), 'r')
transformer.get_algorithm_info(fd)
except AsiParsingException as e:
p... |
86e5959a4636b383ea5a248990a652eb05377d3b3601960236da8b94de7590d5 | def test_multiple_global_range_tags_alg_info(self):
'Test multiple global range tags. Using get_algorithm_info' | Test multiple global range tags. Using get_algorithm_info | Asi/test/test_xml_definitions.py | test_multiple_global_range_tags_alg_info | phac-nml/asipython | 1 | python | def test_multiple_global_range_tags_alg_info(self):
| def test_multiple_global_range_tags_alg_info(self):
<|docstring|>Test multiple global range tags. Using get_algorithm_info<|endoftext|> |
89960a5118e50c0c0e3500988021d0820abb135ef407c4995274790a3225a0b8 | def request(url):
'\n Sends a request to a url\n\n :param url: \n\n '
if (not connected_to_internet()):
raise ConnectionError('You need to have an internet connection to send requests.')
response = requests.get(url)
if response.ok:
return response
else:
exception_str... | Sends a request to a url
:param url: | morphapi/utils/webqueries.py | request | lidakanari/morphapi | 7 | python | def request(url):
'\n Sends a request to a url\n\n :param url: \n\n '
if (not connected_to_internet()):
raise ConnectionError('You need to have an internet connection to send requests.')
response = requests.get(url)
if response.ok:
return response
else:
exception_str... | def request(url):
'\n Sends a request to a url\n\n :param url: \n\n '
if (not connected_to_internet()):
raise ConnectionError('You need to have an internet connection to send requests.')
response = requests.get(url)
if response.ok:
return response
else:
exception_str... |
e1098bdc1b47e9a1aaa8ef81b71f22bf1a74dd7d6b948d2c4529d58d71550fb5 | def query_mouselight(query):
'\n Sends a GET request, not currently used for anything.\n\n :param query: \n\n '
if (not connected_to_internet()):
raise ConnectionError('You need an internet connection for API queries, sorry.')
base_url = 'http://ml-neuronbrowser.janelia.org/'
full_query... | Sends a GET request, not currently used for anything.
:param query: | morphapi/utils/webqueries.py | query_mouselight | lidakanari/morphapi | 7 | python | def query_mouselight(query):
'\n Sends a GET request, not currently used for anything.\n\n :param query: \n\n '
if (not connected_to_internet()):
raise ConnectionError('You need an internet connection for API queries, sorry.')
base_url = 'http://ml-neuronbrowser.janelia.org/'
full_query... | def query_mouselight(query):
'\n Sends a GET request, not currently used for anything.\n\n :param query: \n\n '
if (not connected_to_internet()):
raise ConnectionError('You need an internet connection for API queries, sorry.')
base_url = 'http://ml-neuronbrowser.janelia.org/'
full_query... |
75cd7b1ca1741a9b588c4f22430b2ad71fefcb7f1842d396ff34495f6cd31d0e | def post_mouselight(url, query=None, clean=False, attempts=3):
'\n sends a POST request to a user URL. Query can be either a string (in which case clean should be False) or a dictionary.\n\n :param url: \n :param query: string or dictionary with query (Default value = None)\n :param clean: if not clea... | sends a POST request to a user URL. Query can be either a string (in which case clean should be False) or a dictionary.
:param url:
:param query: string or dictionary with query (Default value = None)
:param clean: if not clean, the query is assumed to be in JSON format (Default value = False)
:param attempts: numb... | morphapi/utils/webqueries.py | post_mouselight | lidakanari/morphapi | 7 | python | def post_mouselight(url, query=None, clean=False, attempts=3):
'\n sends a POST request to a user URL. Query can be either a string (in which case clean should be False) or a dictionary.\n\n :param url: \n :param query: string or dictionary with query (Default value = None)\n :param clean: if not clea... | def post_mouselight(url, query=None, clean=False, attempts=3):
'\n sends a POST request to a user URL. Query can be either a string (in which case clean should be False) or a dictionary.\n\n :param url: \n :param query: string or dictionary with query (Default value = None)\n :param clean: if not clea... |
74f3aa53c0d735a981f2fc588cb076733c2a9883265091708071589f9b403edc | def read_route_line(route):
'\n read route line in gaussian input/output and return functional basis_set\n and a dictionary of other route parameters\n\n Args:\n route (str) : the route line\n\n return\n functional (str) : the method (HF, PBE ...)\n basis_set (str) : the basis set\n... | read route line in gaussian input/output and return functional basis_set
and a dictionary of other route parameters
Args:
route (str) : the route line
return
functional (str) : the method (HF, PBE ...)
basis_set (str) : the basis set
route (dict) : dictionary of parameters | pymatgen/io/gaussian.py | read_route_line | mailhexu/pymatgen | 18 | python | def read_route_line(route):
'\n read route line in gaussian input/output and return functional basis_set\n and a dictionary of other route parameters\n\n Args:\n route (str) : the route line\n\n return\n functional (str) : the method (HF, PBE ...)\n basis_set (str) : the basis set\n... | def read_route_line(route):
'\n read route line in gaussian input/output and return functional basis_set\n and a dictionary of other route parameters\n\n Args:\n route (str) : the route line\n\n return\n functional (str) : the method (HF, PBE ...)\n basis_set (str) : the basis set\n... |
1b43cabd426f2ebbe631a2a6d2891a56fb10218f5066447667906cb7f4e46da7 | @property
def molecule(self):
'\n Returns molecule associated with this GaussianInput.\n '
return self._mol | Returns molecule associated with this GaussianInput. | pymatgen/io/gaussian.py | molecule | mailhexu/pymatgen | 18 | python | @property
def molecule(self):
'\n \n '
return self._mol | @property
def molecule(self):
'\n \n '
return self._mol<|docstring|>Returns molecule associated with this GaussianInput.<|endoftext|> |
e5e79d5ebe092aa16bde9dbfc3a4e95f22af2398646d103114c3e0e2053c0147 | @staticmethod
def parse_coords(coord_lines):
'\n Helper method to parse coordinates.\n '
paras = {}
var_pattern = re.compile('^([A-Za-z]+\\S*)[\\s=,]+([\\d\\-\\.]+)$')
for l in coord_lines:
m = var_pattern.match(l.strip())
if m:
paras[m.group(1)] = float(m.group... | Helper method to parse coordinates. | pymatgen/io/gaussian.py | parse_coords | mailhexu/pymatgen | 18 | python | @staticmethod
def parse_coords(coord_lines):
'\n \n '
paras = {}
var_pattern = re.compile('^([A-Za-z]+\\S*)[\\s=,]+([\\d\\-\\.]+)$')
for l in coord_lines:
m = var_pattern.match(l.strip())
if m:
paras[m.group(1)] = float(m.group(2))
species = []
coords = ... | @staticmethod
def parse_coords(coord_lines):
'\n \n '
paras = {}
var_pattern = re.compile('^([A-Za-z]+\\S*)[\\s=,]+([\\d\\-\\.]+)$')
for l in coord_lines:
m = var_pattern.match(l.strip())
if m:
paras[m.group(1)] = float(m.group(2))
species = []
coords = ... |
bc2b8bcd70d35bf52675b1489b3e890bf1dbbd0f1811bb39ae7afce7b7511ad6 | @staticmethod
def from_string(contents):
'\n Creates GaussianInput from a string.\n\n Args:\n contents: String representing an Gaussian input file.\n\n Returns:\n GaussianInput object\n '
lines = [l.strip() for l in contents.split('\n')]
link0_patt = re.comp... | Creates GaussianInput from a string.
Args:
contents: String representing an Gaussian input file.
Returns:
GaussianInput object | pymatgen/io/gaussian.py | from_string | mailhexu/pymatgen | 18 | python | @staticmethod
def from_string(contents):
'\n Creates GaussianInput from a string.\n\n Args:\n contents: String representing an Gaussian input file.\n\n Returns:\n GaussianInput object\n '
lines = [l.strip() for l in contents.split('\n')]
link0_patt = re.comp... | @staticmethod
def from_string(contents):
'\n Creates GaussianInput from a string.\n\n Args:\n contents: String representing an Gaussian input file.\n\n Returns:\n GaussianInput object\n '
lines = [l.strip() for l in contents.split('\n')]
link0_patt = re.comp... |
5487b95ec22685b54783d2bbd71a19751c7c01884685011c290b6c201c2adf41 | @staticmethod
def from_file(filename):
'\n Creates GaussianInput from a file.\n\n Args:\n filename: Gaussian input filename\n\n Returns:\n GaussianInput object\n '
with zopen(filename, 'r') as f:
return GaussianInput.from_string(f.read()) | Creates GaussianInput from a file.
Args:
filename: Gaussian input filename
Returns:
GaussianInput object | pymatgen/io/gaussian.py | from_file | mailhexu/pymatgen | 18 | python | @staticmethod
def from_file(filename):
'\n Creates GaussianInput from a file.\n\n Args:\n filename: Gaussian input filename\n\n Returns:\n GaussianInput object\n '
with zopen(filename, 'r') as f:
return GaussianInput.from_string(f.read()) | @staticmethod
def from_file(filename):
'\n Creates GaussianInput from a file.\n\n Args:\n filename: Gaussian input filename\n\n Returns:\n GaussianInput object\n '
with zopen(filename, 'r') as f:
return GaussianInput.from_string(f.read())<|docstring|>Cre... |
1b33dfc20ac918709e3c899aa5e13a17eae2a40f5c1da941f9b70fbc31fee509 | def _find_nn_pos_before_site(self, siteindex):
'\n Returns index of nearest neighbor atoms.\n '
alldist = [(self._mol.get_distance(siteindex, i), i) for i in range(siteindex)]
alldist = sorted(alldist, key=(lambda x: x[0]))
return [d[1] for d in alldist] | Returns index of nearest neighbor atoms. | pymatgen/io/gaussian.py | _find_nn_pos_before_site | mailhexu/pymatgen | 18 | python | def _find_nn_pos_before_site(self, siteindex):
'\n \n '
alldist = [(self._mol.get_distance(siteindex, i), i) for i in range(siteindex)]
alldist = sorted(alldist, key=(lambda x: x[0]))
return [d[1] for d in alldist] | def _find_nn_pos_before_site(self, siteindex):
'\n \n '
alldist = [(self._mol.get_distance(siteindex, i), i) for i in range(siteindex)]
alldist = sorted(alldist, key=(lambda x: x[0]))
return [d[1] for d in alldist]<|docstring|>Returns index of nearest neighbor atoms.<|endoftext|> |
cccbf54013b2e2dd3e6689dd6a377aa33eab3e5be71d1f1f7da57236958d723e | def get_zmatrix(self):
'\n Returns a z-matrix representation of the molecule.\n '
output = []
outputvar = []
for (i, site) in enumerate(self._mol):
if (i == 0):
output.append('{}'.format(site.specie))
elif (i == 1):
nn = self._find_nn_pos_before_site... | Returns a z-matrix representation of the molecule. | pymatgen/io/gaussian.py | get_zmatrix | mailhexu/pymatgen | 18 | python | def get_zmatrix(self):
'\n \n '
output = []
outputvar = []
for (i, site) in enumerate(self._mol):
if (i == 0):
output.append('{}'.format(site.specie))
elif (i == 1):
nn = self._find_nn_pos_before_site(i)
bondlength = self._mol.get_distanc... | def get_zmatrix(self):
'\n \n '
output = []
outputvar = []
for (i, site) in enumerate(self._mol):
if (i == 0):
output.append('{}'.format(site.specie))
elif (i == 1):
nn = self._find_nn_pos_before_site(i)
bondlength = self._mol.get_distanc... |
9bbfb33ae5bfac73811507d094ec59dd049761ed614c44d1427031b7b0ef6558 | def get_cart_coords(self):
'\n Return the cartesian coordinates of the molecule\n '
outs = []
to_s = (lambda x: ('%0.6f' % x))
for (i, site) in enumerate(self._mol):
outs.append(' '.join([site.species_string, ' '.join([to_s(j) for j in site.coords])]))
return '\n'.join(outs) | Return the cartesian coordinates of the molecule | pymatgen/io/gaussian.py | get_cart_coords | mailhexu/pymatgen | 18 | python | def get_cart_coords(self):
'\n \n '
outs = []
to_s = (lambda x: ('%0.6f' % x))
for (i, site) in enumerate(self._mol):
outs.append(' '.join([site.species_string, ' '.join([to_s(j) for j in site.coords])]))
return '\n'.join(outs) | def get_cart_coords(self):
'\n \n '
outs = []
to_s = (lambda x: ('%0.6f' % x))
for (i, site) in enumerate(self._mol):
outs.append(' '.join([site.species_string, ' '.join([to_s(j) for j in site.coords])]))
return '\n'.join(outs)<|docstring|>Return the cartesian coordinates of th... |
cf556e0326311475fcedfb2c678e4169aba7bb1234b7fa7f135f690ef2a00086 | def to_string(self, cart_coords=False):
'\n Return GaussianInput string\n\n Option: whe cart_coords sets to True return the cartesian coordinates\n instead of the z-matrix\n\n '
def para_dict_to_string(para, joiner=' '):
para_str = [('{}={}'.format(k, v) if v else k)... | Return GaussianInput string
Option: whe cart_coords sets to True return the cartesian coordinates
instead of the z-matrix | pymatgen/io/gaussian.py | to_string | mailhexu/pymatgen | 18 | python | def to_string(self, cart_coords=False):
'\n Return GaussianInput string\n\n Option: whe cart_coords sets to True return the cartesian coordinates\n instead of the z-matrix\n\n '
def para_dict_to_string(para, joiner=' '):
para_str = [('{}={}'.format(k, v) if v else k)... | def to_string(self, cart_coords=False):
'\n Return GaussianInput string\n\n Option: whe cart_coords sets to True return the cartesian coordinates\n instead of the z-matrix\n\n '
def para_dict_to_string(para, joiner=' '):
para_str = [('{}={}'.format(k, v) if v else k)... |
8be33e42d986a1628f461a216485842fac055676ef0e00022f6f5e8cdd86e0aa | def write_file(self, filename, cart_coords=False):
'\n Write the input string into a file\n\n Option: see __str__ method\n '
with zopen(filename, 'w') as f:
f.write(self.to_string(cart_coords)) | Write the input string into a file
Option: see __str__ method | pymatgen/io/gaussian.py | write_file | mailhexu/pymatgen | 18 | python | def write_file(self, filename, cart_coords=False):
'\n Write the input string into a file\n\n Option: see __str__ method\n '
with zopen(filename, 'w') as f:
f.write(self.to_string(cart_coords)) | def write_file(self, filename, cart_coords=False):
'\n Write the input string into a file\n\n Option: see __str__ method\n '
with zopen(filename, 'w') as f:
f.write(self.to_string(cart_coords))<|docstring|>Write the input string into a file
Option: see __str__ method<|endoftext|> |
6122ce099de5d0ce6a12f30865b2437983db7945c6fc7a65f94d22e82356d739 | def as_dict(self):
'\n Json-serializable dict representation.\n '
structure = self.final_structure
d = {'has_gaussian_completed': self.properly_terminated, 'nsites': len(structure)}
comp = structure.composition
d['unit_cell_formula'] = comp.as_dict()
d['reduced_cell_formula'] = Com... | Json-serializable dict representation. | pymatgen/io/gaussian.py | as_dict | mailhexu/pymatgen | 18 | python | def as_dict(self):
'\n \n '
structure = self.final_structure
d = {'has_gaussian_completed': self.properly_terminated, 'nsites': len(structure)}
comp = structure.composition
d['unit_cell_formula'] = comp.as_dict()
d['reduced_cell_formula'] = Composition(comp.reduced_formula).as_dict... | def as_dict(self):
'\n \n '
structure = self.final_structure
d = {'has_gaussian_completed': self.properly_terminated, 'nsites': len(structure)}
comp = structure.composition
d['unit_cell_formula'] = comp.as_dict()
d['reduced_cell_formula'] = Composition(comp.reduced_formula).as_dict... |
3e4f42e4f3954f6ae471349beb152d810230fe23c35c8a08329d199ba7993718 | def read_scan(self):
'\n Read a potential energy surface from a gaussian scan calculation.\n\n Returns:\n\n A dict: {"energies": [ values ],\n "coords": {"d1": [ values ], "A2", [ values ], ... }}\n\n "energies" are the energies of all points of the potential ... | Read a potential energy surface from a gaussian scan calculation.
Returns:
A dict: {"energies": [ values ],
"coords": {"d1": [ values ], "A2", [ values ], ... }}
"energies" are the energies of all points of the potential energy
surface. "coords" are the internal coordinates used to compute t... | pymatgen/io/gaussian.py | read_scan | mailhexu/pymatgen | 18 | python | def read_scan(self):
'\n Read a potential energy surface from a gaussian scan calculation.\n\n Returns:\n\n A dict: {"energies": [ values ],\n "coords": {"d1": [ values ], "A2", [ values ], ... }}\n\n "energies" are the energies of all points of the potential ... | def read_scan(self):
'\n Read a potential energy surface from a gaussian scan calculation.\n\n Returns:\n\n A dict: {"energies": [ values ],\n "coords": {"d1": [ values ], "A2", [ values ], ... }}\n\n "energies" are the energies of all points of the potential ... |
d4a01f9bd3628ff3ee2e974f0c2df310809de768265a3aaf7d0b84179efcc8ab | def get_scan_plot(self, coords=None):
'\n Get a matplotlib plot of the potential energy surface.\n\n Args:\n coords: internal coordinate name to use as abcissa.\n '
from pymatgen.util.plotting import pretty_plot
plt = pretty_plot(12, 8)
d = self.read_scan()
if (coords... | Get a matplotlib plot of the potential energy surface.
Args:
coords: internal coordinate name to use as abcissa. | pymatgen/io/gaussian.py | get_scan_plot | mailhexu/pymatgen | 18 | python | def get_scan_plot(self, coords=None):
'\n Get a matplotlib plot of the potential energy surface.\n\n Args:\n coords: internal coordinate name to use as abcissa.\n '
from pymatgen.util.plotting import pretty_plot
plt = pretty_plot(12, 8)
d = self.read_scan()
if (coords... | def get_scan_plot(self, coords=None):
'\n Get a matplotlib plot of the potential energy surface.\n\n Args:\n coords: internal coordinate name to use as abcissa.\n '
from pymatgen.util.plotting import pretty_plot
plt = pretty_plot(12, 8)
d = self.read_scan()
if (coords... |
ac5410dbebb95643d11020c0359439650cfbb79a4680d21f618e5f466d321e28 | def save_scan_plot(self, filename='scan.pdf', img_format='pdf', coords=None):
'\n Save matplotlib plot of the potential energy surface to a file.\n\n Args:\n filename: Filename to write to.\n img_format: Image format to use. Defaults to EPS.\n coords: internal coordina... | Save matplotlib plot of the potential energy surface to a file.
Args:
filename: Filename to write to.
img_format: Image format to use. Defaults to EPS.
coords: internal coordinate name to use as abcissa. | pymatgen/io/gaussian.py | save_scan_plot | mailhexu/pymatgen | 18 | python | def save_scan_plot(self, filename='scan.pdf', img_format='pdf', coords=None):
'\n Save matplotlib plot of the potential energy surface to a file.\n\n Args:\n filename: Filename to write to.\n img_format: Image format to use. Defaults to EPS.\n coords: internal coordina... | def save_scan_plot(self, filename='scan.pdf', img_format='pdf', coords=None):
'\n Save matplotlib plot of the potential energy surface to a file.\n\n Args:\n filename: Filename to write to.\n img_format: Image format to use. Defaults to EPS.\n coords: internal coordina... |
ba8893129d4103ec27b76d74420745b9e5d38a7bec138fd0d1f9a3226f036863 | def read_excitation_energies(self):
'\n Read a excitation energies after a TD-DFT calculation.\n\n Returns:\n\n A list: A list of tuple for each transition such as\n [(energie (eV), lambda (nm), oscillatory strength), ... ]\n '
transitions = list()
with zop... | Read a excitation energies after a TD-DFT calculation.
Returns:
A list: A list of tuple for each transition such as
[(energie (eV), lambda (nm), oscillatory strength), ... ] | pymatgen/io/gaussian.py | read_excitation_energies | mailhexu/pymatgen | 18 | python | def read_excitation_energies(self):
'\n Read a excitation energies after a TD-DFT calculation.\n\n Returns:\n\n A list: A list of tuple for each transition such as\n [(energie (eV), lambda (nm), oscillatory strength), ... ]\n '
transitions = list()
with zop... | def read_excitation_energies(self):
'\n Read a excitation energies after a TD-DFT calculation.\n\n Returns:\n\n A list: A list of tuple for each transition such as\n [(energie (eV), lambda (nm), oscillatory strength), ... ]\n '
transitions = list()
with zop... |
17b79241e67b201c2d913fdf5c9dbd750e6e4f8cd36bff4c345290949de8375e | def get_spectre_plot(self, sigma=0.05, step=0.01):
'\n Get a matplotlib plot of the UV-visible spectra. Transition are plotted\n as vertical lines and as a sum of normal functions with sigma with. The\n broadening is applied in energy and the spectra is plotted as a function\n of the wav... | Get a matplotlib plot of the UV-visible spectra. Transition are plotted
as vertical lines and as a sum of normal functions with sigma with. The
broadening is applied in energy and the spectra is plotted as a function
of the wavelength.
Args:
sigma: Full width at half maximum in eV for normal functions.
step: b... | pymatgen/io/gaussian.py | get_spectre_plot | mailhexu/pymatgen | 18 | python | def get_spectre_plot(self, sigma=0.05, step=0.01):
'\n Get a matplotlib plot of the UV-visible spectra. Transition are plotted\n as vertical lines and as a sum of normal functions with sigma with. The\n broadening is applied in energy and the spectra is plotted as a function\n of the wav... | def get_spectre_plot(self, sigma=0.05, step=0.01):
'\n Get a matplotlib plot of the UV-visible spectra. Transition are plotted\n as vertical lines and as a sum of normal functions with sigma with. The\n broadening is applied in energy and the spectra is plotted as a function\n of the wav... |
2c645d96eedcf7e487a6f6d0b6ebb81b199fc0cda8b62412cb941bf0896a4043 | def save_spectre_plot(self, filename='spectre.pdf', img_format='pdf', sigma=0.05, step=0.01):
'\n Save matplotlib plot of the spectre to a file.\n\n Args:\n filename: Filename to write to.\n img_format: Image format to use. Defaults to EPS.\n sigma: Full width at half ... | Save matplotlib plot of the spectre to a file.
Args:
filename: Filename to write to.
img_format: Image format to use. Defaults to EPS.
sigma: Full width at half maximum in eV for normal functions.
step: bin interval in eV | pymatgen/io/gaussian.py | save_spectre_plot | mailhexu/pymatgen | 18 | python | def save_spectre_plot(self, filename='spectre.pdf', img_format='pdf', sigma=0.05, step=0.01):
'\n Save matplotlib plot of the spectre to a file.\n\n Args:\n filename: Filename to write to.\n img_format: Image format to use. Defaults to EPS.\n sigma: Full width at half ... | def save_spectre_plot(self, filename='spectre.pdf', img_format='pdf', sigma=0.05, step=0.01):
'\n Save matplotlib plot of the spectre to a file.\n\n Args:\n filename: Filename to write to.\n img_format: Image format to use. Defaults to EPS.\n sigma: Full width at half ... |
57c29fbbd74cfadf5821708029fbcc9c8c601e9a482ed29b6d961b5098d3550c | def to_input(self, filename, mol=None, charge=None, spin_multiplicity=None, title=None, functional=None, basis_set=None, route_parameters=None, input_parameters=None, link0_parameters=None, dieze_tag=None, cart_coords=False):
'\n Write a new input file using by default the last geometry read in the output\n ... | Write a new input file using by default the last geometry read in the output
file and with the same calculation parameters. Arguments are the same as
GaussianInput class.
Returns
gaunip (GaussianInput) : the gaussian input object | pymatgen/io/gaussian.py | to_input | mailhexu/pymatgen | 18 | python | def to_input(self, filename, mol=None, charge=None, spin_multiplicity=None, title=None, functional=None, basis_set=None, route_parameters=None, input_parameters=None, link0_parameters=None, dieze_tag=None, cart_coords=False):
'\n Write a new input file using by default the last geometry read in the output\n ... | def to_input(self, filename, mol=None, charge=None, spin_multiplicity=None, title=None, functional=None, basis_set=None, route_parameters=None, input_parameters=None, link0_parameters=None, dieze_tag=None, cart_coords=False):
'\n Write a new input file using by default the last geometry read in the output\n ... |
5a63d54a2a47d684526ce3c8351df6ca69dbac777d605f37f62d1cbcd0c3b451 | def parse_species(sp_str):
'\n The species specification can take many forms. E.g.,\n simple integers representing atomic numbers ("8"),\n actual species string ("C") or a labelled species ("C1").\n Sometimes, the species string is also not properly capitalized,\n ... | The species specification can take many forms. E.g.,
simple integers representing atomic numbers ("8"),
actual species string ("C") or a labelled species ("C1").
Sometimes, the species string is also not properly capitalized,
e.g, ("c1"). This method should take care of these known formats. | pymatgen/io/gaussian.py | parse_species | mailhexu/pymatgen | 18 | python | def parse_species(sp_str):
'\n The species specification can take many forms. E.g.,\n simple integers representing atomic numbers ("8"),\n actual species string ("C") or a labelled species ("C1").\n Sometimes, the species string is also not properly capitalized,\n ... | def parse_species(sp_str):
'\n The species specification can take many forms. E.g.,\n simple integers representing atomic numbers ("8"),\n actual species string ("C") or a labelled species ("C1").\n Sometimes, the species string is also not properly capitalized,\n ... |
300ac8dcc7faff9e4343662f5a342177dcc570509e013543d992579b5827daab | def floatList(l):
' return a list of float from a list of string '
return [float(v) for v in l] | return a list of float from a list of string | pymatgen/io/gaussian.py | floatList | mailhexu/pymatgen | 18 | python | def floatList(l):
' '
return [float(v) for v in l] | def floatList(l):
' '
return [float(v) for v in l]<|docstring|>return a list of float from a list of string<|endoftext|> |
9d538fabb4a27e99938e0b07bfdf8acac8d9df23a77122391df6f191c965991c | def detect_faces(path):
'Detects faces in an image.'
client = vision.ImageAnnotatorClient()
with io.open(path, 'rb') as image_file:
content = image_file.read()
image = types.Image(content=content)
response = client.face_detection(image=image)
faces = response.face_annotations
likelih... | Detects faces in an image. | face/face_detection.py | detect_faces | DisenWang/google_api | 0 | python | def detect_faces(path):
client = vision.ImageAnnotatorClient()
with io.open(path, 'rb') as image_file:
content = image_file.read()
image = types.Image(content=content)
response = client.face_detection(image=image)
faces = response.face_annotations
likelihood_name = ('UNKNOWN', 'VERY... | def detect_faces(path):
client = vision.ImageAnnotatorClient()
with io.open(path, 'rb') as image_file:
content = image_file.read()
image = types.Image(content=content)
response = client.face_detection(image=image)
faces = response.face_annotations
likelihood_name = ('UNKNOWN', 'VERY... |
c5821370440576e908b3ecd352ffc575461ca41144c441abfd83d10e2f432a69 | def mark_catchup_completed_if_possible(self, ledger_info: LedgerInfo):
'\n Checks if the ledger is caught up to the the sequence number\n specified in the ConsistencyProof, if yes then mark the catchup as\n done for this ledger.\n :param ledger_info:\n :return: True if catchup is ... | Checks if the ledger is caught up to the the sequence number
specified in the ConsistencyProof, if yes then mark the catchup as
done for this ledger.
:param ledger_info:
:return: True if catchup is done, false otherwise | plenum/common/ledger_manager.py | mark_catchup_completed_if_possible | ArtObr/indy-plenum | 0 | python | def mark_catchup_completed_if_possible(self, ledger_info: LedgerInfo):
'\n Checks if the ledger is caught up to the the sequence number\n specified in the ConsistencyProof, if yes then mark the catchup as\n done for this ledger.\n :param ledger_info:\n :return: True if catchup is ... | def mark_catchup_completed_if_possible(self, ledger_info: LedgerInfo):
'\n Checks if the ledger is caught up to the the sequence number\n specified in the ConsistencyProof, if yes then mark the catchup as\n done for this ledger.\n :param ledger_info:\n :return: True if catchup is ... |
053886900aa935ab6358c66d177ae7f57a9601ee7e2917230de552ee503facb6 | def canProcessCatchupReply(self, catchupReply: CatchupRep) -> List[Tuple]:
'\n Checks for any duplicates or gaps in txns, returns txns sorted by seq no\n '
ledgerId = getattr(catchupReply, f.LEDGER_ID.nm)
ledgerState = self.getLedgerInfoByType(ledgerId).state
if (ledgerState != LedgerState... | Checks for any duplicates or gaps in txns, returns txns sorted by seq no | plenum/common/ledger_manager.py | canProcessCatchupReply | ArtObr/indy-plenum | 0 | python | def canProcessCatchupReply(self, catchupReply: CatchupRep) -> List[Tuple]:
'\n \n '
ledgerId = getattr(catchupReply, f.LEDGER_ID.nm)
ledgerState = self.getLedgerInfoByType(ledgerId).state
if (ledgerState != LedgerState.syncing):
logger.debug('{} cannot process catchup reply {} sinc... | def canProcessCatchupReply(self, catchupReply: CatchupRep) -> List[Tuple]:
'\n \n '
ledgerId = getattr(catchupReply, f.LEDGER_ID.nm)
ledgerState = self.getLedgerInfoByType(ledgerId).state
if (ledgerState != LedgerState.syncing):
logger.debug('{} cannot process catchup reply {} sinc... |
5d9fd8c1b9bf8d6341ceee950ae6f637d392d25789348ea9f027dbd551ca9567 | @staticmethod
def _get_merged_catchup_txns(existing_txns, new_txns):
'\n Merge any newly received txns during catchup with already received txns\n :param existing_txns:\n :param new_txns:\n :return:\n '
idx_to_remove = []
for (i, (seq_no, _)) in enumerate(existing_txns):
... | Merge any newly received txns during catchup with already received txns
:param existing_txns:
:param new_txns:
:return: | plenum/common/ledger_manager.py | _get_merged_catchup_txns | ArtObr/indy-plenum | 0 | python | @staticmethod
def _get_merged_catchup_txns(existing_txns, new_txns):
'\n Merge any newly received txns during catchup with already received txns\n :param existing_txns:\n :param new_txns:\n :return:\n '
idx_to_remove = []
for (i, (seq_no, _)) in enumerate(existing_txns):
... | @staticmethod
def _get_merged_catchup_txns(existing_txns, new_txns):
'\n Merge any newly received txns during catchup with already received txns\n :param existing_txns:\n :param new_txns:\n :return:\n '
idx_to_remove = []
for (i, (seq_no, _)) in enumerate(existing_txns):
... |
9cab533ab4bc6784ee95b93ec13d8017bef20ca7453c1c11d30eaebac3a57387 | async def test_async_setup_platform():
'Test setup platform does nothing (it uses config entries).'
(await switch.async_setup_platform(None, None, None)) | Test setup platform does nothing (it uses config entries). | tests/components/smartthings/test_switch.py | test_async_setup_platform | MarvinT/home-assistant | 0 | python | async def test_async_setup_platform():
(await switch.async_setup_platform(None, None, None)) | async def test_async_setup_platform():
(await switch.async_setup_platform(None, None, None))<|docstring|>Test setup platform does nothing (it uses config entries).<|endoftext|> |
d8323e01b885305666015e866622827aeb46452489446f5de52a10d251a4ef91 | async def test_entity_and_device_attributes(hass, device_factory):
'Test the attributes of the entity are correct.'
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'on'})
entity_registry = (await hass.helpers.entity_registry.async_get_registry())
device_registry = (await hass... | Test the attributes of the entity are correct. | tests/components/smartthings/test_switch.py | test_entity_and_device_attributes | MarvinT/home-assistant | 0 | python | async def test_entity_and_device_attributes(hass, device_factory):
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'on'})
entity_registry = (await hass.helpers.entity_registry.async_get_registry())
device_registry = (await hass.helpers.device_registry.async_get_registry())
... | async def test_entity_and_device_attributes(hass, device_factory):
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'on'})
entity_registry = (await hass.helpers.entity_registry.async_get_registry())
device_registry = (await hass.helpers.device_registry.async_get_registry())
... |
232798ae8d50210806ba733d3dca2579cffcdc9ac46dfb17785b10c54da379f9 | async def test_turn_off(hass, device_factory):
'Test the switch turns of successfully.'
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'on'})
(await setup_platform(hass, SWITCH_DOMAIN, device))
(await hass.services.async_call('switch', 'turn_off', {'entity_id': 'switch.switc... | Test the switch turns of successfully. | tests/components/smartthings/test_switch.py | test_turn_off | MarvinT/home-assistant | 0 | python | async def test_turn_off(hass, device_factory):
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'on'})
(await setup_platform(hass, SWITCH_DOMAIN, device))
(await hass.services.async_call('switch', 'turn_off', {'entity_id': 'switch.switch_1'}, blocking=True))
state = hass.... | async def test_turn_off(hass, device_factory):
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'on'})
(await setup_platform(hass, SWITCH_DOMAIN, device))
(await hass.services.async_call('switch', 'turn_off', {'entity_id': 'switch.switch_1'}, blocking=True))
state = hass.... |
f20de5f2185b12d06c1dd5a9d2aa0f9309a674179dc9455aa89d4a7dba5dd228 | async def test_turn_on(hass, device_factory):
'Test the switch turns of successfully.'
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'off'})
(await setup_platform(hass, SWITCH_DOMAIN, device))
(await hass.services.async_call('switch', 'turn_on', {'entity_id': 'switch.switch... | Test the switch turns of successfully. | tests/components/smartthings/test_switch.py | test_turn_on | MarvinT/home-assistant | 0 | python | async def test_turn_on(hass, device_factory):
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'off'})
(await setup_platform(hass, SWITCH_DOMAIN, device))
(await hass.services.async_call('switch', 'turn_on', {'entity_id': 'switch.switch_1'}, blocking=True))
state = hass.s... | async def test_turn_on(hass, device_factory):
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'off'})
(await setup_platform(hass, SWITCH_DOMAIN, device))
(await hass.services.async_call('switch', 'turn_on', {'entity_id': 'switch.switch_1'}, blocking=True))
state = hass.s... |
cbe069d9bfdaf5a0993f9e38abdd435f2f49c84f10b47365059e20e75958722a | async def test_update_from_signal(hass, device_factory):
'Test the switch updates when receiving a signal.'
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'off'})
(await setup_platform(hass, SWITCH_DOMAIN, device))
(await device.switch_on(True))
async_dispatcher_send(has... | Test the switch updates when receiving a signal. | tests/components/smartthings/test_switch.py | test_update_from_signal | MarvinT/home-assistant | 0 | python | async def test_update_from_signal(hass, device_factory):
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'off'})
(await setup_platform(hass, SWITCH_DOMAIN, device))
(await device.switch_on(True))
async_dispatcher_send(hass, SIGNAL_SMARTTHINGS_UPDATE, [device.device_id])
... | async def test_update_from_signal(hass, device_factory):
device = device_factory('Switch_1', [Capability.switch], {Attribute.switch: 'off'})
(await setup_platform(hass, SWITCH_DOMAIN, device))
(await device.switch_on(True))
async_dispatcher_send(hass, SIGNAL_SMARTTHINGS_UPDATE, [device.device_id])
... |
072093c6d2df120e3dfb8776796db460f16b5c826e2288b51c6117d1a1d67ce2 | async def test_unload_config_entry(hass, device_factory):
'Test the switch is removed when the config entry is unloaded.'
device = device_factory('Switch 1', [Capability.switch], {Attribute.switch: 'on'})
config_entry = (await setup_platform(hass, SWITCH_DOMAIN, device))
(await hass.config_entries.async... | Test the switch is removed when the config entry is unloaded. | tests/components/smartthings/test_switch.py | test_unload_config_entry | MarvinT/home-assistant | 0 | python | async def test_unload_config_entry(hass, device_factory):
device = device_factory('Switch 1', [Capability.switch], {Attribute.switch: 'on'})
config_entry = (await setup_platform(hass, SWITCH_DOMAIN, device))
(await hass.config_entries.async_forward_entry_unload(config_entry, 'switch'))
assert (not ... | async def test_unload_config_entry(hass, device_factory):
device = device_factory('Switch 1', [Capability.switch], {Attribute.switch: 'on'})
config_entry = (await setup_platform(hass, SWITCH_DOMAIN, device))
(await hass.config_entries.async_forward_entry_unload(config_entry, 'switch'))
assert (not ... |
bacf2ca25d4d522337ca1782ff1926f3f6e9db59d2bf6c7193df1934f31f9657 | def setup_logging(options, conf):
'\n Sets up the logging options for a log with supplied name\n\n :param options: Mapping of typed option key/values\n :param conf: Mapping of untyped key/values from config file\n '
log_config = (options.get('log_config') or get_option(conf, 'log_config', default=No... | Sets up the logging options for a log with supplied name
:param options: Mapping of typed option key/values
:param conf: Mapping of untyped key/values from config file | melange/common/config.py | setup_logging | rackerlabs/melange | 1 | python | def setup_logging(options, conf):
'\n Sets up the logging options for a log with supplied name\n\n :param options: Mapping of typed option key/values\n :param conf: Mapping of untyped key/values from config file\n '
log_config = (options.get('log_config') or get_option(conf, 'log_config', default=No... | def setup_logging(options, conf):
'\n Sets up the logging options for a log with supplied name\n\n :param options: Mapping of typed option key/values\n :param conf: Mapping of untyped key/values from config file\n '
log_config = (options.get('log_config') or get_option(conf, 'log_config', default=No... |
84a7d96efb4e4bf557a397fff405a44d2be2c3a7bf0ad477c1d11e6367999be8 | def round_gp(self):
'Rounds the gas price to gwei'
gp = (self.gas_price / 10000000.0)
if ((gp >= 1) and (gp < 100)):
gp = int(np.ceil(gp))
elif ((gp >= 100) and (gp < 2500)):
gp = (gp / 10)
gp = int(np.ceil(gp))
gp = (gp * 10)
elif (gp >= 2500):
gp = (gp / 100... | Rounds the gas price to gwei | egs/egs_ref.py | round_gp | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def round_gp(self):
gp = (self.gas_price / 10000000.0)
if ((gp >= 1) and (gp < 100)):
gp = int(np.ceil(gp))
elif ((gp >= 100) and (gp < 2500)):
gp = (gp / 10)
gp = int(np.ceil(gp))
gp = (gp * 10)
elif (gp >= 2500):
gp = (gp / 100)
gp = int(np.ceil(gp)... | def round_gp(self):
gp = (self.gas_price / 10000000.0)
if ((gp >= 1) and (gp < 100)):
gp = int(np.ceil(gp))
elif ((gp >= 100) and (gp < 2500)):
gp = (gp / 10)
gp = int(np.ceil(gp))
gp = (gp * 10)
elif (gp >= 2500):
gp = (gp / 100)
gp = int(np.ceil(gp)... |
9b5ff50b0417012d5a2889b3b6277ec2d48c4880e6b6afb19c7636dfc2c93f0c | def _get_pending_tx_hashes(self, try_methods=True):
'gets pending transaction hashes and autodetects method for doing so'
try:
hashlist = []
if (self.pending_method == 'geth'):
txpoolcontent = web3.txpool.content
txpoolpending = txpoolcontent['pending']
for tx... | gets pending transaction hashes and autodetects method for doing so | egs/egs_ref.py | _get_pending_tx_hashes | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def _get_pending_tx_hashes(self, try_methods=True):
try:
hashlist = []
if (self.pending_method == 'geth'):
txpoolcontent = web3.txpool.content
txpoolpending = txpoolcontent['pending']
for tx_sequence in txpoolpending.values():
for tx_obj in tx... | def _get_pending_tx_hashes(self, try_methods=True):
try:
hashlist = []
if (self.pending_method == 'geth'):
txpoolcontent = web3.txpool.content
txpoolpending = txpoolcontent['pending']
for tx_sequence in txpoolpending.values():
for tx_obj in tx... |
3db1d24c14bbae919c6d6d8064f990bb2fc7ede55ddc25f8f13da23ad7aafe1e | def append_current_txp(self):
'gets list of all txhash in txpool at block and appends to dataframe'
current_block = web3.eth.blockNumber
try:
console.info((('getting txpool hashes at block ' + str(current_block)) + ' ...'))
hashlist = self._get_pending_tx_hashes()
txpool_current = pd... | gets list of all txhash in txpool at block and appends to dataframe | egs/egs_ref.py | append_current_txp | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def append_current_txp(self):
current_block = web3.eth.blockNumber
try:
console.info((('getting txpool hashes at block ' + str(current_block)) + ' ...'))
hashlist = self._get_pending_tx_hashes()
txpool_current = pd.DataFrame(index=hashlist)
txpool_current['block'] = current_... | def append_current_txp(self):
current_block = web3.eth.blockNumber
try:
console.info((('getting txpool hashes at block ' + str(current_block)) + ' ...'))
hashlist = self._get_pending_tx_hashes()
txpool_current = pd.DataFrame(index=hashlist)
txpool_current['block'] = current_... |
c7d28abecf2517e7133e08cd719d829c5e721a95a861c17151dde376eb44ce3d | def make_txpool_block(self, block, alltx):
'gets txhash from all transactions in txpool at block and merges the data from alltx'
txpool_block = self.txpool_df.loc[(self.txpool_df['block'] == block)]
if (not txpool_block.empty):
txpool_block = txpool_block.drop(['block'], axis=1)
alltx.loc[(a... | gets txhash from all transactions in txpool at block and merges the data from alltx | egs/egs_ref.py | make_txpool_block | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def make_txpool_block(self, block, alltx):
txpool_block = self.txpool_df.loc[(self.txpool_df['block'] == block)]
if (not txpool_block.empty):
txpool_block = txpool_block.drop(['block'], axis=1)
alltx.loc[(alltx.index.isin(txpool_block.index), 'in_txp')] = block
txpool_block = txpool... | def make_txpool_block(self, block, alltx):
txpool_block = self.txpool_df.loc[(self.txpool_df['block'] == block)]
if (not txpool_block.empty):
txpool_block = txpool_block.drop(['block'], axis=1)
alltx.loc[(alltx.index.isin(txpool_block.index), 'in_txp')] = block
txpool_block = txpool... |
95fee4334bc707d91689e48b6d7e621fefe59326dfe6f1e47151781aded443ca | def process_block_data(self, block_transactions_df, block_obj):
'gets block-level summary data and append to block dataframe'
console.debug('Processing block data...')
if (len(block_obj.transactions) > 0):
block_transactions_df['weighted_fee'] = (block_transactions_df['round_gp_10gwei'] * block_tran... | gets block-level summary data and append to block dataframe | egs/egs_ref.py | process_block_data | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def process_block_data(self, block_transactions_df, block_obj):
console.debug('Processing block data...')
if (len(block_obj.transactions) > 0):
block_transactions_df['weighted_fee'] = (block_transactions_df['round_gp_10gwei'] * block_transactions_df['gas_offered'])
block_mingasprice = block... | def process_block_data(self, block_transactions_df, block_obj):
console.debug('Processing block data...')
if (len(block_obj.transactions) > 0):
block_transactions_df['weighted_fee'] = (block_transactions_df['round_gp_10gwei'] * block_transactions_df['gas_offered'])
block_mingasprice = block... |
be47456a184558f7b554d6fbda97f5a3df0258d7d423ef8d470db7727d6fc510 | def analyze_last200blocks(self, block):
'analyzes % of last 200 blocks by min mined gas price, summary stats '
blockdata = self.blockdata_df
recent_blocks = blockdata.loc[((blockdata['block_number'] > (block - 200)), ['mingasprice', 'block_number', 'gaslimit', 'time_mined', 'speed'])]
gaslimit = recent_... | analyzes % of last 200 blocks by min mined gas price, summary stats | egs/egs_ref.py | analyze_last200blocks | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def analyze_last200blocks(self, block):
' '
blockdata = self.blockdata_df
recent_blocks = blockdata.loc[((blockdata['block_number'] > (block - 200)), ['mingasprice', 'block_number', 'gaslimit', 'time_mined', 'speed'])]
gaslimit = recent_blocks['gaslimit'].mean()
last10 = recent_blocks.sort_values('b... | def analyze_last200blocks(self, block):
' '
blockdata = self.blockdata_df
recent_blocks = blockdata.loc[((blockdata['block_number'] > (block - 200)), ['mingasprice', 'block_number', 'gaslimit', 'time_mined', 'speed'])]
gaslimit = recent_blocks['gaslimit'].mean()
last10 = recent_blocks.sort_values('b... |
667ce0256e8718188d56fcae546d1e1d5e2a0ee7beef756e2005a7bef3808330 | def write_to_sql(self):
'write data to mysql for analysis'
self.blockdata_df = self.blockdata_df.sort_values(by=['block_number'], ascending=False)
self.blockdata_df = self.blockdata_df.head(1500)
self.blockdata_df.to_sql(con=engine, name='blockdata2', if_exists='replace', index=False)
console.info((... | write data to mysql for analysis | egs/egs_ref.py | write_to_sql | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def write_to_sql(self):
self.blockdata_df = self.blockdata_df.sort_values(by=['block_number'], ascending=False)
self.blockdata_df = self.blockdata_df.head(1500)
self.blockdata_df.to_sql(con=engine, name='blockdata2', if_exists='replace', index=False)
console.info((('wrote ' + str(len(self.blockdata... | def write_to_sql(self):
self.blockdata_df = self.blockdata_df.sort_values(by=['block_number'], ascending=False)
self.blockdata_df = self.blockdata_df.head(1500)
self.blockdata_df.to_sql(con=engine, name='blockdata2', if_exists='replace', index=False)
console.info((('wrote ' + str(len(self.blockdata... |
fe86d9efa482b58236dacac41b2733e59740e39f7cdb3e5a0007755c73a49994 | def prune(self, block):
'keep dataframes and databases from getting too big'
console.info('pruning blockdata')
deleteBlock = (block - 5000)
self.blockdata_df = self.blockdata_df.loc[(self.blockdata_df['block_number'] > deleteBlock)] | keep dataframes and databases from getting too big | egs/egs_ref.py | prune | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def prune(self, block):
console.info('pruning blockdata')
deleteBlock = (block - 5000)
self.blockdata_df = self.blockdata_df.loc[(self.blockdata_df['block_number'] > deleteBlock)] | def prune(self, block):
console.info('pruning blockdata')
deleteBlock = (block - 5000)
self.blockdata_df = self.blockdata_df.loc[(self.blockdata_df['block_number'] > deleteBlock)]<|docstring|>keep dataframes and databases from getting too big<|endoftext|> |
5f0b9865b5b0deaaf80ad116c0b9d84b100344c645791d7a19494cea41499d64 | def load_txdata(self):
'load data from mysql into dataframes'
try:
ins = inspect(engine)
if ('alltx' in ins.get_table_names()):
alltx = pd.read_sql('SELECT * from alltx order by block_posted desc limit 100000', con=engine)
alltx.set_index('index', drop=True, inplace=True)... | load data from mysql into dataframes | egs/egs_ref.py | load_txdata | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def load_txdata(self):
try:
ins = inspect(engine)
if ('alltx' in ins.get_table_names()):
alltx = pd.read_sql('SELECT * from alltx order by block_posted desc limit 100000', con=engine)
alltx.set_index('index', drop=True, inplace=True)
if ('level_0' in alltx.co... | def load_txdata(self):
try:
ins = inspect(engine)
if ('alltx' in ins.get_table_names()):
alltx = pd.read_sql('SELECT * from alltx order by block_posted desc limit 100000', con=engine)
alltx.set_index('index', drop=True, inplace=True)
if ('level_0' in alltx.co... |
1f9667573f9cf9599f1fd5996cf4176f08b5adc2c9588a3695731ea8e4a2210d | def listen(self):
'listens for new pending tx and adds them to the alltx dataframe'
current_block = web3.eth.blockNumber
console.info((('listening for new transactions at block ' + str(current_block)) + '....'))
self.new_tx_list = []
try:
while True:
if (self.process_block < (cur... | listens for new pending tx and adds them to the alltx dataframe | egs/egs_ref.py | listen | ethgasstation/ethgasstation-adaptive-oracle | 47 | python | def listen(self):
current_block = web3.eth.blockNumber
console.info((('listening for new transactions at block ' + str(current_block)) + '....'))
self.new_tx_list = []
try:
while True:
if (self.process_block < (current_block - 5)):
console.warn('blocks jumped, sk... | def listen(self):
current_block = web3.eth.blockNumber
console.info((('listening for new transactions at block ' + str(current_block)) + '....'))
self.new_tx_list = []
try:
while True:
if (self.process_block < (current_block - 5)):
console.warn('blocks jumped, sk... |
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