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from rdkit import Geometry from rdkit.Chem.FeatMaps import FeatMaps, FeatMapPoint import re """ ScoreMode=All DirScoreMode=Ignore BeginParams family=Aromatic radius=2.5 width=1.0 profile=Gaussian family=Acceptor radius=1.5 EndParams # optional BeginPoints family=Acceptor pos=(1.0, 0.0, 5.0) weight=1.25 dir=(1,...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/FeatMaps/FeatMapParser.py
0.489015
0.265901
FeatMapParser.py
pypi
import copy from rdkit.Chem.FeatMaps import FeatMaps class MergeMethod(object): # Put the new point at the weighted average position of the two fused points WeightedAverage = 0 # Put the new point at the un-weighted average position of the two fused points Average = 1 # Put the new point at the position of ...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/FeatMaps/FeatMapUtils.py
0.607197
0.505432
FeatMapUtils.py
pypi
import logging from rdkit import Chem from rdkit.Chem import AllChem from .utils import memoized_property log = logging.getLogger(__name__) class Normalization(object): """A normalization transform defined by reaction SMARTS.""" def __init__(self, name, transform): """ :param string name:...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolStandardize/normalize.py
0.54577
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normalize.py
pypi
import logging from rdkit import Chem log = logging.getLogger(__name__) MAX_STRUCTURES = 1000 class ResonanceEnumerator(object): """Simple wrapper around RDKit ResonanceMolSupplier. """ def __init__(self, kekule_all=False, allow_incomplete_octets=False, unconstrained_cations=False, ...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolStandardize/resonance.py
0.864782
0.472501
resonance.py
pypi
import logging import sys from rdkit import Chem from .errors import StopValidateError from .validations import VALIDATIONS #: The default format for log messages. SIMPLE_FORMAT = '%(levelname)s: [%(validation)s] %(message)s' #: A more detailed format for log messages. Specify when initializing a Validator. LONG_F...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolStandardize/validate.py
0.734405
0.288403
validate.py
pypi
import logging from rdkit import Chem from rdkit.Chem import rdMolDescriptors from .utils import memoized_property log = logging.getLogger(__name__) class FragmentPattern(object): """A fragment defined by a SMARTS pattern.""" def __init__(self, name, smarts): """Initialize a FragmentPattern with ...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolStandardize/fragment.py
0.508544
0.252154
fragment.py
pypi
import copy import logging from rdkit import Chem from rdkit.Chem.rdchem import BondDir, BondStereo, BondType from .utils import memoized_property, pairwise log = logging.getLogger(__name__) class TautomerTransform(object): """Rules to transform one tautomer to another. Each TautomerTransform is defined b...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolStandardize/tautomer.py
0.562537
0.558568
tautomer.py
pypi
import copy import logging from rdkit import Chem from .metal import MetalDisconnector from .fragment import PREFER_ORGANIC, LargestFragmentChooser, FragmentRemover from .normalize import NORMALIZATIONS, MAX_RESTARTS, Normalizer from .tautomer import TAUTOMER_TRANSFORMS, TAUTOMER_SCORES, MAX_TAUTOMERS, TautomerCanoni...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolStandardize/standardize.py
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standardize.py
pypi
import logging from rdkit import Chem from .errors import StopValidateError from .fragment import REMOVE_FRAGMENTS class Validation(object): """The base class that all :class:`~molvs.validations.Validation` subclasses must inherit from.""" def __init__(self, log): self.log = logging.LoggerAdapter(l...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolStandardize/validations.py
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validations.py
pypi
import logging from rdkit import Chem log = logging.getLogger(__name__) # TODO: This won't disconnect e.g. covalent [Na]Cl... class MetalDisconnector(object): """Class for breaking covalent bonds between metals and organic atoms under certain conditions.""" def __init__(self): log.debug('Initial...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolStandardize/metal.py
0.433981
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metal.py
pypi
import copy import logging from rdkit import Chem from .utils import memoized_property log = logging.getLogger(__name__) class AcidBasePair(object): """An acid and its conjugate base, defined by SMARTS. A strength-ordered list of AcidBasePairs can be used to ensure the strongest acids in a molecule ionize...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolStandardize/charge.py
0.68595
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charge.py
pypi
import pickle from rdkit import Chem, DataStructs similarityMethods = { 'RDK': DataStructs.ExplicitBitVect, 'AtomPairs': DataStructs.IntSparseIntVect, 'TopologicalTorsions': DataStructs.LongSparseIntVect, 'Pharm2D': DataStructs.SparseBitVect, 'Gobbi2D': DataStructs.SparseBitVect, 'Morgan': DataStructs.UI...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/MolDb/FingerprintUtils.py
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FingerprintUtils.py
pypi
import sys import argparse from rdkit import Chem from rdkit import Geometry from rdkit.Chem import rdDepictor def AlignDepict(mol, core, corePattern=None, acceptFailure=False): """ Arguments: - mol: the molecule to be aligned, this will come back with a single conformer. - c...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/ChemUtils/AlignDepict.py
0.408985
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AlignDepict.py
pypi
from rdkit import DataStructs from rdkit.DataStructs import TopNContainer class SimilarityScreener(object): """ base class important attributes: probe: the probe fingerprint against which we screen. metric: a function that takes two arguments and returns a similarity measur...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Fingerprints/SimilarityScreener.py
0.670069
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SimilarityScreener.py
pypi
import pickle import numpy from rdkit import DataStructs from rdkit.Chem.Fingerprints import FingerprintMols, MolSimilarity from rdkit.ML.Cluster import Murtagh message = FingerprintMols.message error = FingerprintMols.error def GetDistanceMatrix(data, metric, isSimilarity=1): """ data should be a list of tuples ...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Fingerprints/ClusterMols.py
0.753648
0.416737
ClusterMols.py
pypi
import numpy from rdkit import Geometry from rdkit.Chem import ChemicalFeatures from rdkit.RDLogger import logger logger = logger() class Pharmacophore: def __init__(self, feats, initMats=True): self._initializeFeats(feats) nf = len(feats) self._boundsMat = numpy.zeros((nf, nf), dtype=numpy.float64) ...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Pharm3D/Pharmacophore.py
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Pharmacophore.py
pypi
from matplotlib.lines import Line2D from matplotlib.patches import Polygon from matplotlib.pyplot import figure from rdkit.Chem.Draw.canvasbase import CanvasBase class Canvas(CanvasBase): def __init__(self, size, name='', imageType='png'): self._name = name self.size = size dpi = max(size[0], size[1])...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Draw/mplCanvas.py
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mplCanvas.py
pypi
import re from rdkit.Chem.Draw.canvasbase import CanvasBase from rdkit.sping import pid faceMap = {'sans': 'helvetica', 'serif': 'times'} def convertColor(color): return pid.Color(color[0], color[1], color[2]) class Canvas(CanvasBase): def __init__(self, size, name, imageType='png'): if imageType == "pdf...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Draw/spingCanvas.py
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spingCanvas.py
pypi
""" Interactive molecule rendering through rdkit-structure-renderer.js """ from xml.dom import minidom import uuid import base64 import json import re import logging from . import rdMolDraw2D from IPython.display import HTML, display from rdkit import Chem from rdkit.Chem import Draw log = logging.getLogger(__name__) ...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Draw/InteractiveRenderer.py
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InteractiveRenderer.py
pypi
import math class CanvasBase: """Base class for specialized canvas backends""" def addCanvasLine(self, p1, p2, color=(0, 0, 0), color2=None, **kwargs): """Draw a single line on the canvas This function will draw a line between `p1` and `p2` with the given `color`. If `co...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Draw/canvasbase.py
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canvasbase.py
pypi
import os import warnings from collections import namedtuple from importlib.util import find_spec from io import BytesIO import numpy from rdkit import Chem from rdkit import RDConfig from rdkit import rdBase from rdkit.Chem import rdDepictor from rdkit.Chem.Draw import rdMolDraw2D from rdkit.Chem.Draw.MolDrawing impo...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Draw/__init__.py
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__init__.py
pypi
from rdkit.Chem.Draw.canvasbase import CanvasBase from rdkit.Chem.Draw.rdMolDraw2DQt import rdkitQtVersion if rdkitQtVersion.startswith('6'): try: from PyQt6 import QtCore from PyQt6 import QtGui except ImportError: # PySide version numbers leapt at Qt6 from PySide6 import QtCore from PySide6 ...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Draw/qtCanvas.py
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qtCanvas.py
pypi
import copy import time from rdkit import Chem, Geometry from rdkit.Chem import AllChem from rdkit.Chem.Subshape import BuilderUtils from rdkit.Chem.Subshape import SubshapeObjects import pickle class SubshapeCombineOperations(object): UNION = 0 SUM = 1 INTERSECT = 2 class SubshapeBuilder(object): gridDi...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Subshape/SubshapeBuilder.py
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SubshapeBuilder.py
pypi
class SkeletonPoint(object): location = None shapeMoments = None shapeDirs = None molFeatures = None featmapFeatures = None fracVol = 0.0 def __init__(self, *args, **kwargs): self._initMemberData() self.location = kwargs.get('location', None) def _initMemberData(self): self.shapeMoments ...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/Chem/Subshape/SubshapeObjects.py
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SubshapeObjects.py
pypi
class Color: """This class is used to represent color. Components red, green, blue are in the range 0 (dark) to 1 (full intensity).""" def __init__(self, red=0, green=0, blue=0): "Initialize with red, green, blue in range [0-1]." _float = float d = self.__dict__ d[...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/sping/colors.py
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colors.py
pypi
from math import sin, cos, pi, ceil def bezierArc(x1, y1, x2, y2, startAng=0, extent=90): """bezierArc(x1,y1, x2,y2, startAng=0, extent=90) --> List of Bezier curve control points. (x1, y1) and (x2, y2) are the corners of the enclosing rectangle. The coordinate system has coordinates that increase to the right an...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/sping/PDF/pdfgeom.py
0.831725
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pdfgeom.py
pypi
from wxPython.wx import * from rdkit.sping import pid as sping_pid class WxCanvasError(RuntimeError): pass class PiddleWxDc(sping_pid.Canvas): def __init__(self, aWxDc, size=(300, 300), name="piddleWX"): sping_pid.Canvas.__init__(self, size, name) self.dc = aWxDc self.dc.BeginDrawing() def __del...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/sping/WX/pidWxDc.py
0.799129
0.205456
pidWxDc.py
pypi
""" Functionality implemented: x drawLine x drawPolygon x drawString x drawImage Known problems: """ from rdkit.sping import pid from qt import * from qtcanvas import * from math import * import copy def _ColorToQt(color): """ convenience function for converting a sping.pid color to a Qt color """...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/sping/Qt/pidQt.py
0.674908
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pidQt.py
pypi
import os import re from rdkit import RDConfig if not RDConfig.usePgSQL: _atomDbName = os.path.join(RDConfig.RDDataDir, 'atomdb.gdb') else: _atomDbName = "::RDData" def GetAtomicData(atomDict, descriptorsDesired, dBase=_atomDbName, table='atomic_data', where='', user='sysdba', password='ma...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/utils/chemutils.py
0.470493
0.269857
chemutils.py
pypi
from sping import pid as piddle class VisOpts(object): circRad = 10 minCircRad = 4 maxCircRad = 16 circColor = piddle.Color(0.6, 0.6, 0.9) terminalEmptyColor = piddle.Color(.8, .8, .2) terminalOnColor = piddle.Color(0.8, 0.8, 0.8) terminalOffColor = piddle.Color(0.2, 0.2, 0.2) outlineColor = piddle.tr...
/rdkit_pypi-2023.3.1b1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl/rdkit/DataStructs/HierarchyVis.py
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HierarchyVis.py
pypi
import rdkit_step class RdkitStep(object): """Helper class needed for the stevedore integration. This must provide a description() method that returns a dict containing a description of this node, and create_node() and create_tk_node() methods for creating the graphical and non-graphical nodes. ...
/rdkit_step-2023.2.22.tar.gz/rdkit_step-2023.2.22/rdkit_step/rdkit_step.py
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0.526404
rdkit_step.py
pypi
properties = { "3D-Descriptors": { "Asphericity": { "name": "asphericity", "dimensionality": "scalar", "type": "float", "units": "", "description": "Molecular asphericity", "citations": ["doi:10.1063/1.464689"], }, "Ecce...
/rdkit_step-2023.2.22.tar.gz/rdkit_step-2023.2.22/rdkit_step/metadata.py
0.686685
0.639328
metadata.py
pypi
import pprint # noqa: F401 import rdkit_step # noqa: F401 import seamm from seamm_util import ureg, Q_, units_class # noqa: F401 import seamm_widgets as sw class TkRdkit(seamm.TkNode): """ The graphical part of a RDKit step in a flowchart. Paramaters ---------- tk_flowchart : TkFlowchart = No...
/rdkit_step-2023.2.22.tar.gz/rdkit_step-2023.2.22/rdkit_step/tk_rdkit.py
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tk_rdkit.py
pypi
import logging import seamm import pprint # noqa: F401 logger = logging.getLogger(__name__) class RdkitParameters(seamm.Parameters): """ The control parameters for RDKit. The developer will add a dictionary of Parameters to this class. The keys are parameters for the current plugin, which themselve...
/rdkit_step-2023.2.22.tar.gz/rdkit_step-2023.2.22/rdkit_step/rdkit_parameters.py
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rdkit_parameters.py
pypi
import itertools from typing import Optional, Dict, List, Union, Set, Tuple from typing_extensions import Literal import numpy as np from rdkit import Chem as rdChem from rdkit.Chem import AllChem as rdAllChem from rdkit_utilities import rdForceFieldHelpers def GetExclusions(mol: rdChem.Mol) -> Set[Tuple[int, int]...
/rdkit_utilities-0.2.1.tar.gz/rdkit_utilities-0.2.1/rdkit_utilities/rdDistGeom.py
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rdDistGeom.py
pypi
from typing import List, Tuple, Union, Dict, Any from rdkit import Chem as rdChem import numpy as np from .utilities import isiterable def AddConformerWithCoordinates( mol: rdChem.Mol, coordinates: np.ndarray, ) -> int: """Add conformer to molecule with coordinates in angstrom""" from rdkit import G...
/rdkit_utilities-0.2.1.tar.gz/rdkit_utilities-0.2.1/rdkit_utilities/rdchem.py
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rdchem.py
pypi
from typing import Union, List, Tuple from typing_extensions import Literal from rdkit import Chem as rdChem from rdkit.Chem import rdForceFieldHelpers as rdFF from rdkit.ForceField.rdForceField import ForceField as RDForceField RDKIT_FF_NAMES = ["UFF", "MMFF", "MMFF94", "MMFF94S"] RDKIT_FF_NAME_TYPE = Literal[(*RDKI...
/rdkit_utilities-0.2.1.tar.gz/rdkit_utilities-0.2.1/rdkit_utilities/rdForceFieldHelpers.py
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rdForceFieldHelpers.py
pypi
from typing import List, Set, Union import numpy as np from rdkit import Chem as rdChem _RDPROP_ATOM_SMARTS = "_smarts_query" def GetAtomNeighborIndices( mol: rdChem.Mol, centralAtomIndices: Union[Set[int], List[int]] = [], includeCentralAtoms: bool = True, numAtomNeighbors: int = 0, ) -> Set[int]: ...
/rdkit_utilities-0.2.1.tar.gz/rdkit_utilities-0.2.1/rdkit_utilities/rdmolops.py
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rdmolops.py
pypi
from typing import Tuple, List import itertools from rdkit import Chem as rdChem from rdkit.Chem import rdChemReactions def ClickReaction( reaction: rdChemReactions.ChemicalReaction, reactants: Tuple[rdChem.Mol, ...], ) -> List[rdChem.Mol]: """Run a "click" reaction by manually building a molecule O...
/rdkit_utilities-0.2.1.tar.gz/rdkit_utilities-0.2.1/rdkit_utilities/rdChemReactions.py
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rdChemReactions.py
pypi
from typing import Optional, List, Any import numpy as np def compute_atom_distance_matrix(coordinates: np.ndarray) -> np.ndarray: """Compute atom-to-atom distance for each conformer Parameters ---------- coordinates: numpy.ndarray 3D matrix of coordinates, with shape (n_conformers, n_atoms,...
/rdkit_utilities-0.2.1.tar.gz/rdkit_utilities-0.2.1/rdkit_utilities/utilities.py
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utilities.py
pypi
import functools from typing import Optional, Dict from rdkit import Chem as rdChem __all__ = [ "reorder_constructed_molecule", "MolFromSmiles", "MolFromSmarts", ] def reorder_constructed_molecule(func): @functools.wraps(func) def wrapper( *args, orderByMapNumber: bool = False, ...
/rdkit_utilities-0.2.1.tar.gz/rdkit_utilities-0.2.1/rdkit_utilities/_io/_rdmolfiles.py
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_rdmolfiles.py
pypi
See: https://rdkit.readthedocs.org/en/latest/Cartridge.html#reference-guide https://github.com/rdkit/rdkit/issues/1762 Types: mol : rdkit molecule qmol : rdkit query molecule sfp : sparse fp bfp : bitvector fp Parameters: rdkit.tanimoto_threshold : threshold value for the Tanimoto similarity rdkit.dice_thres...
/rdktools-0.9.5.tar.gz/rdktools-0.9.5/pgsql/NOTES.md
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NOTES.md
pypi
import math import matplotlib.pyplot as plt from .Generaldistribution import Distribution class Gaussian(Distribution): """ Gaussian distribution class for calculating and visualizing a Gaussian distribution. Attributes: mean (float) representing the mean value of the distribution stdev (float) representing ...
/rdm_distributions-0.5.tar.gz/rdm_distributions-0.5/rdm_distributions/Gaussiandistribution.py
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Gaussiandistribution.py
pypi
|Build_Status| |Coverage_Status| |PyPi_version| |RDMCL| -------------- Recursive Dynamic Markov Clustering =================================== A method for identifying hierarchical orthogroups among homologous sequences ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 'Orthology' is a t...
/rdmcl-1.1.0.tar.gz/rdmcl-1.1.0/README.rst
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README.rst
pypi
from behave import * import re import os from rdopkg.utils import distgitmagic from rdopkg.utils import specfile from rdopkg.utils.distgitmagic import git from rdopkg.utils.testing import exdiff def _create_distgit(context, version, release, magic_comments=None): name = 'foo-bar' context.execute_steps(u'Give...
/rdopkg-1.6.0.tar.gz/rdopkg-1.6.0/features/steps/distgit.py
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distgit.py
pypi
import socket import json __RDOS_Host__ = '127.0.0.1' __RDOS_Port__ = '9393' # List to save REQUEST Parameters send FROM SERVER for query Match __RDOS_Req__ = {"parameters": "request"} __RDOS_Gen__ = {} class RdosClient(): # Function client_init connects to server and sends JSON Parameters needed # Function...
/rdospy-0.1.3-py3-none-any.whl/rdospy-0.1.3.data/scripts/client.py
0.488039
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client.py
pypi
from __future__ import annotations from typing import TypeVar import numpy as np import numpy.typing as npt Array = TypeVar("Array", npt.NDArray, list) def _compute_distances( points: npt.NDArray[float], start: npt.NDArray[float], end: npt.NDArray[float] ) -> npt.NDArray[float]: """Compute the distances be...
/rdp-algo-0.1.1.tar.gz/rdp-algo-0.1.1/rdp_algo/__init__.py
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__init__.py
pypi
import re from pathlib import Path from playwright.sync_api import sync_playwright, Playwright, Browser, Page from typing import Optional, Literal from rdp_manipulations.logger import logger from image_processing.main import is_image_contain, is_image_identic, image_locate_center BASE_DIR = Path(__file__).parent.reso...
/rdp_manipulations-0.3.4-py3-none-any.whl/rdp_manipulations/main.py
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main.py
pypi
import numpy as np import cv2 # type: ignore from rdp_manipulations.logger import logger from typing import Optional ImageLocatorType = Optional[dict[str, float]] ImageLocatorCenterType = Optional[tuple[float, float]] def image_diff(image_path1: str, image_path2: str) -> float: image1 = cv2.imread(image_path1)...
/rdp_manipulations-0.3.4-py3-none-any.whl/image_processing/main.py
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0.45048
main.py
pypi
import numpy as np import numpy.typing as npt from numba import njit, prange, float64 from numba.np.extensions import cross2d _rdp_quick_use_cache_ = True @njit(float64[:](float64[:], float64[:, :]), parallel=True, cache=_rdp_quick_use_cache_) def _compute_distance_single_point(p1: npt.NDArray[float], p_array: npt.N...
/rdp_quick-1.0.3-py3-none-any.whl/rdp_quick/compute_distance.py
0.835215
0.781831
compute_distance.py
pypi
import numpy as np import numpy.typing as npt import typing from scipy.signal import find_peaks def compute_curvature_2d(x: npt.NDArray[float], y: npt.NDArray[float], gradient_nargs: typing.Union[dict, None] = None) -> npt.NDArray[float]: """ Computes the curvature of the line made of the points x and y :...
/rdp_quick-1.0.3-py3-none-any.whl/rdp_quick/curvature.py
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0.706558
curvature.py
pypi
import numpy as np import numpy.typing as npt from rdp_quick.check_window import check_windows from rdp_quick.curvature import compute_curvature_and_build_windows import typing def rdp_initial_windows(p_array: npt.NDArray[float], epsilon: float, initial_windows: typing.List[typing.Tuple[int, i...
/rdp_quick-1.0.3-py3-none-any.whl/rdp_quick/__init__.py
0.916724
0.698542
__init__.py
pypi
# rdpy3- for Python3 **this is a fork for porting rdpy3to Python3** Remote Desktop Protocol in twisted python. rdpy3is a pure Python implementation of the Microsoft RDP (Remote Desktop Protocol) protocol (client and server side). rdpy3is built over the event driven network engine Twisted. rdpy3support standard RDP ...
/rdpy3-3.0.4.tar.gz/rdpy3-3.0.4/README.md
0.633297
0.924722
README.md
pypi
from __future__ import print_function import sys, os, getopt from PyQt5 import QtCore, QtGui from rdpy3.protocol.rfb import rfb import rdpy3.core.log as log from rdpy3.ui.qt5 import qtImageFormatFromRFBPixelFormat from twisted.internet import task #set log level log._LOG_LEVEL = log.Level.INFO class RFBScreenShotFac...
/rdpy3-3.0.4.tar.gz/rdpy3-3.0.4/bin/rdpy3-vncscreenshot.py
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0.150403
rdpy3-vncscreenshot.py
pypi
# RDROBUST The `rdrobust` package implements the statistical inference and graphical procedures for Regression Discontinuity designs employing local polynomial and partitioning methods. It provides point estimators, confidence intervals estimators, bandwidth selectors, automatic RD plots, and many other features. Thi...
/rdrobust-1.0.8.tar.gz/rdrobust-1.0.8/README.md
0.421909
0.949153
README.md
pypi
from typing import Any, List, Dict import logging import json from os import getenv import importlib logger = logging.getLogger(__name__) logger.setLevel(logging.INFO) def str2bool(v): TRUE_STRS = ("true", "verdade", "yes", "sim", "t", "v", "y", "s", "1") FALSE_STRS = ("false", "falso", "no", "nao", "não", ...
/rds-core-0.2.3.tar.gz/rds-core-0.2.3/rds/core/helpers/__init__.py
0.555556
0.199016
__init__.py
pypi
import datetime from typing import Dict, Union, Any, List from dynaconf.utils.boxing import DynaBox from rds.core.config import settings from rds.core.helpers import instantiate_class __search_engine_cache: Dict[str, Any] = {} def get_search_engine_config(alias: str = "default") -> DynaBox: return settings.SEAR...
/rds-core-0.2.3.tar.gz/rds-core-0.2.3/rds/core/searchengine/__init__.py
0.781289
0.244126
__init__.py
pypi
from typing import Any, List, Dict, Union from rds.core.cache.base import BaseCache from rds.core.searchengine import search_engine as search_engine_func class SearchEngineCache(BaseCache): def __init__(self, **params: Dict[str, Any]) -> None: super(SearchEngineCache, self).__init__(**params) sel...
/rds-core-0.2.3.tar.gz/rds-core-0.2.3/rds/core/cache/search_engine.py
0.835249
0.196152
search_engine.py
pypi
from typing import Any, Union, List, Dict from rds.core.cache import MISSING_KEY, DEFAULT_TTL class BaseCache: def __init__(self, **params: Dict[str, Any]) -> None: self.default_ttl = int(str(params.get("ttl", DEFAULT_TTL))) def get_ttl(self, ttl: Union[int, None] = None) -> int: return ttl i...
/rds-core-0.2.3.tar.gz/rds-core-0.2.3/rds/core/cache/base.py
0.931455
0.297451
base.py
pypi
import logging from typing import Union, Dict, Any, List from datetime import datetime from rds.core.helpers import get_dict_by_pathname strptime = datetime.strptime logger = logging.getLogger(__name__) logger.setLevel(logging.INFO) class Field: def __init__(self, source_field: Union[str, object, None], none_a...
/rds-core-0.2.3.tar.gz/rds-core-0.2.3/rds/core/transformers/fields/__init__.py
0.872639
0.152979
__init__.py
pypi
import boto.ec2 import boto.rds2 from docopt import docopt from boto.ec2.cloudwatch import MetricAlarm from .constants import VERSION DEBUG = False def get_rds_instances(region): """ Retrieves the list of all RDS instances Args: region (str) Returns: (list) List of valid state RDS ...
/rds-create-cpu-alarms-1.6.tar.gz/rds-create-cpu-alarms-1.6/rds_create_cpu_alarms/main.py
0.708616
0.377713
main.py
pypi
from typing import Any, List, Dict import opensearchpy import elasticsearch from rds_framework.cache.base import BaseCache from rds_framework.searchengine import search_engine as search_engine_func class SearchEngineCache(BaseCache): def __init__(self, **params: Dict[str, Any]) -> None: super(SearchEngi...
/rds-framework-0.0.9.tar.gz/rds-framework-0.0.9/rds_framework/cache/search_engine.py
0.810891
0.163212
search_engine.py
pypi
from typing import Any, Union, List, Dict DEFAULT_TTL = 300 MISSING_KEY = object() class BaseCache: def __init__(self, **params: Dict[str, Any]) -> None: self.default_ttl = int(str(params.get("ttl", DEFAULT_TTL))) def get_ttl(self, ttl: Union[int, None] = None) -> int: return ttl if (isins...
/rds-framework-0.0.9.tar.gz/rds-framework-0.0.9/rds_framework/cache/base.py
0.92138
0.317387
base.py
pypi
```{todo} THIS IS SUPPOSED TO BE AN EXAMPLE. MODIFY IT ACCORDING TO YOUR NEEDS! The document assumes you are using a source repository service that promotes a contribution model similar to [GitHub's fork and pull request workflow]. While this is true for the majority of services (like GitHub, GitLab, BitBu...
/rds2py-0.2.0.tar.gz/rds2py-0.2.0/CONTRIBUTING.md
0.606382
0.921781
CONTRIBUTING.md
pypi
from typing import Union, Dict, Optional from bertopic import _ctfidf import numpy as np from sklearn.feature_extraction.text import CountVectorizer from scipy.sparse.csr import csr_matrix from rdsmproj.preprocess import tokenize_text def _top_n_idx_sparse(matrix: csr_matrix, n: int) -> np.ndarray: """ Return indi...
/tm_lda/_ctfidf.py
0.950273
0.733953
_ctfidf.py
pypi
from pathlib import Path from typing import Union, Optional import time import logging from gensim.models.ldamodel import LdaModel from gensim.test.utils import datapath from gensim.corpora.dictionary import Dictionary import psutil from hyperopt import STATUS_OK from rdsmproj import utils from rdsmproj.tm_lda import ...
/tm_lda/lda_model.py
0.822296
0.249722
lda_model.py
pypi
from typing import Dict, Union, Optional from pathlib import Path from wordcloud import WordCloud import matplotlib.pyplot as plt import seaborn as sns import numpy as np import gensim from gensim.models.coherencemodel import CoherenceModel from gensim.corpora.dictionary import Dictionary from rdsmproj import utils f...
/tm_lda/topic_tools.py
0.935876
0.592136
topic_tools.py
pypi
from pathlib import Path from typing import Optional, Union import optuna from hyperopt import hp, tpe, Trials, fmin, atpe, rand from gensim.models.phrases import ENGLISH_CONNECTOR_WORDS from rdsmproj.tm_lda import lda_model as lm from rdsmproj import preprocess as pp from rdsmproj import utils from rdsmproj.tm_t2v.top...
/tm_lda/main_legacy.py
0.770033
0.211865
main_legacy.py
pypi
import os import sys def which(cmd, mode=os.F_OK | os.X_OK, path=None): """Given a command, mode, and a PATH string, return the path which conforms to the given mode on the PATH, or None if there is no such file. `mode` defaults to os.F_OK | os.X_OK. `path` defaults to the result of os.environ.ge...
/rdspgbadger-1.2.2.tar.gz/rdspgbadger-1.2.2/package/which.py
0.432183
0.293341
which.py
pypi
from typing import List, Iterator, Union from rdsr_navigator.concept_name import ConceptName from rdsr_navigator.repr_display import reper_html from rdsr_navigator.sr_exceptions import SrMissingContentException import rdsr_navigator.value_extractors as ves _VALUE_EXTRACTORS: List[ves.ValueExtractorBase] = [ves.CodeMea...
/rdsr_navigator-0.3.1.tar.gz/rdsr_navigator-0.3.1/rdsr_navigator/sr_element.py
0.883783
0.252315
sr_element.py
pypi
# rdstation-python ![](https://img.shields.io/badge/version-0.2.2-success) ![](https://img.shields.io/badge/Python-3.8%20|%203.9%20|%203.10%20|%203.11-4B8BBE?logo=python&logoColor=white) *rdstation-python* is an API wrapper for RD Station, written in Python. 1. [RD Station Marketing](#1-rd-station-marketing) (This p...
/rdstation_python-0.2.2.tar.gz/rdstation_python-0.2.2/README.md
0.413122
0.839701
README.md
pypi
<div align="center"> <br/> <p align="center"> <i>This repository is part of <a href="https://sdv.dev">The Synthetic Data Vault Project</a>, a project from <a href="https://datacebo.com">DataCebo</a>.</i> </p> [![Development Status](https://img.shields.io/badge/Development%20Status-5%20--%20Production/Stable-green)...
/rdt_identity-1.7.0.tar.gz/rdt_identity-1.7.0/README.md
0.834306
0.989129
README.md
pypi
# Release workflow The process of releasing a new version involves several steps: 1. [Install RDT from source](#install-rdt-from-source) 2. [Linting and tests](#linting-and-tests) 3. [Documentation](#documentation) 4. [Milestone](#milestone) 5. [HISTORY.md](#history.md) 6. [Distribution](#distribution) 7. [Inte...
/rdt_identity-1.7.0.tar.gz/rdt_identity-1.7.0/RELEASE.md
0.415254
0.907845
RELEASE.md
pypi
# History ## 1.7.0 - 2023-08-22 This release adds 3 new transformers: 1. `UniformEncoder` - A categorical and boolean transformer that converts the column into a uniform distribution. 2. `OrderedUniformEncoder` - The same as above, but the order for the categories can be specified, changing which range in the unifor...
/rdt_identity-1.7.0.tar.gz/rdt_identity-1.7.0/HISTORY.md
0.86012
0.758063
HISTORY.md
pypi
<div align="center"> <br/> <p align="center"> <i>This repository is part of <a href="https://sdv.dev">The Synthetic Data Vault Project</a>, a project from <a href="https://datacebo.com">DataCebo</a>.</i> </p> [![Development Status](https://img.shields.io/badge/Development%20Status-5%20--%20Production/Stable-green)...
/rdt-1.7.0.tar.gz/rdt-1.7.0/README.md
0.834306
0.989129
README.md
pypi
# Release workflow The process of releasing a new version involves several steps: 1. [Install RDT from source](#install-rdt-from-source) 2. [Linting and tests](#linting-and-tests) 3. [Documentation](#documentation) 4. [Milestone](#milestone) 5. [HISTORY.md](#history.md) 6. [Distribution](#distribution) 7. [Inte...
/rdt-1.7.0.tar.gz/rdt-1.7.0/RELEASE.md
0.415254
0.907845
RELEASE.md
pypi
# History ## 1.7.0 - 2023-08-22 This release adds 3 new transformers: 1. `UniformEncoder` - A categorical and boolean transformer that converts the column into a uniform distribution. 2. `OrderedUniformEncoder` - The same as above, but the order for the categories can be specified, changing which range in the unifor...
/rdt-1.7.0.tar.gz/rdt-1.7.0/HISTORY.md
0.86012
0.758063
HISTORY.md
pypi
import math import matplotlib.pyplot as plt from .Generaldistribution import Distribution class Gaussian(Distribution): """ Gaussian distribution class for calculating and visualizing a Gaussian distribution. Attributes: mean (float) representing the mean value of the distribution stdev (float) representing ...
/rdto_probability-0.1.tar.gz/rdto_probability-0.1/rdto_probability/Gaussiandistribution.py
0.679604
0.85318
Gaussiandistribution.py
pypi
import asyncio from datetime import datetime from functools import wraps from pathlib import Path import aiohttp import click from rdwatch_cli import api from rdwatch_cli.config import get_credentials, set_credentials from rdwatch_cli.exceptions import ImageNotFound, ServerError from rdwatch_cli.validators import val...
/rdwatch_cli-0.0.5.tar.gz/rdwatch_cli-0.0.5/src/rdwatch_cli/__init__.py
0.573917
0.174024
__init__.py
pypi
import asyncio import io from dataclasses import dataclass from datetime import datetime import aiohttp import mercantile from PIL import Image from rdwatch_cli.exceptions import ImageNotFound, ServerError @dataclass class WebpTile: tile: mercantile.Tile timestamp: datetime image: Image.Image async de...
/rdwatch_cli-0.0.5.tar.gz/rdwatch_cli-0.0.5/src/rdwatch_cli/api/image.py
0.568895
0.30072
image.py
pypi
from typing import Any from typing import Optional from typing import Pattern import regex class Matches: # TODO: Generic[AnyStr] (binary pattern support) def __init__(self, pattern: str, *args: Any, **kwargs: Any) -> None: self._pattern = regex.compile(pattern, *args, **kwargs) self._fail: Opti...
/re_assert-1.1.0.tar.gz/re_assert-1.1.0/re_assert.py
0.603114
0.222236
re_assert.py
pypi
import socket import struct PROXY_TYPE_SOCKS4 = 1 PROXY_TYPE_SOCKS5 = 2 PROXY_TYPE_HTTP = 3 _defaultproxy = None _orgsocket = socket.socket class ProxyError(Exception): def __init__(self, value): self.value = value def __str__(self): return repr(self.value) class GeneralProxyError(ProxyEr...
/re_common-0.2.53.tar.gz/re_common-0.2.53/re_common/baselibrary/pakge_other/socks.py
0.522446
0.175009
socks.py
pypi
import pymssql class BaseMsSql(object): def __init__(self, host, user, pwd, db, charset, **kwargs): """ as_dict 作为字典返回 :param host: :param user: :param pwd: :param db: :param kwargs: """ self.host = host self.user = user sel...
/re_common-0.2.53.tar.gz/re_common-0.2.53/re_common/baselibrary/utils/basemssql.py
0.421909
0.230389
basemssql.py
pypi
import os import sys import importlib def import_fun(obj, mod, m=[], modename=""): """ 这个方法只能在类里面设置属性 :param obj: :param mod: :param m: :return: """ if m: for item in m: module = getattr(mod, item) setattr(obj, item, module) elif modename: se...
/re_common-0.2.53.tar.gz/re_common-0.2.53/re_common/baselibrary/utils/importfun.py
0.447943
0.206674
importfun.py
pypi
import re import string # 7-bit C1 ANSI escape sequences # https://www.cnblogs.com/longdouhzt/archive/2012/09/25/2703173.html ANSI_ESCAPE = re.compile(r'\x1B[@-_][0-?]*[ -/]*[@-~]') class BaseString(): @classmethod def r_strip_one_char(cls, string): """ 去除右边的一个字符 :param string: ...
/re_common-0.2.53.tar.gz/re_common-0.2.53/re_common/baselibrary/utils/basestring.py
0.445047
0.429669
basestring.py
pypi
import datetime import time from calendar import monthrange, Calendar # timedalte 是datetime中的一个对象,该对象表示两个时间的差值 from datetime import timedelta # microseconds (毫秒) 1 second = 1000 milliseconds # milliseconds (微秒) 1 milliseconds = 1000 milliseconds """ %Y 完整的年份 %m 月份(01 - 12) %d 一个月中的第几天(01 - 31) %H 一天中的第几个小时(24小时制,00 -...
/re_common-0.2.53.tar.gz/re_common-0.2.53/re_common/baselibrary/utils/basetime.py
0.400867
0.323701
basetime.py
pypi
import pydash from pydash import without, py_, reject, power class BasePyDash(object): @classmethod def find_index(cls, lists, callback): """ lists = [ {'name': 'Michelangelo', 'active': False}, {'name': 'Donatello', 'active': False}, {'name': 'Leonardo', '...
/re_common-0.2.53.tar.gz/re_common-0.2.53/re_common/baselibrary/utils/basepydash.py
0.478529
0.319148
basepydash.py
pypi
from re_common.baselibrary.utils.baselist import BaseList class JavaCodeDeal(object): def __init__(self): self.strings = """ """ self.lists = [] self.baselist = BaseList() self.keylist = [] def set_strings(self, strings): """ 设置源数据 :param strin...
/re_common-0.2.53.tar.gz/re_common-0.2.53/re_common/baselibrary/tools/java_code_deal.py
0.430028
0.185966
java_code_deal.py
pypi
from email.mime.multipart import MIMEMultipart from email.mime.text import MIMEText import smtplib def build_mime_message( mail_from: str, mail_to: str, subject: str, html_content: str, mime_subtype: str = 'mixed', mime_charset: str = 'utf-8'): """ Build a MIME message that can be used ...
/re_data-0.10.8b1-py3-none-any.whl/re_data/notifications/email.py
0.552298
0.174709
email.py
pypi
from re import sub from tabulate import tabulate import requests from typing import Any, Dict, Optional, List, Tuple from datetime import datetime def slack_notify(webhook_url: str, body: dict) -> None: """ Send a message to a slack webhook :param webhook_url: str Slack incoming webhook url e.g ht...
/re_data-0.10.8b1-py3-none-any.whl/re_data/notifications/slack.py
0.76708
0.434041
slack.py
pypi
from enum import Enum try: from typing import Literal, Union except ImportError: from typing_extensions import Literal from typing import Optional class LocationHint(Enum): USA = { "locale": "en-US", "LocationHint": [ { "country": "United States", ...
/re_edge_gpt-0.0.6-py3-none-any.whl/re_edge_gpt/locale.py
0.712832
0.36591
locale.py
pypi
import uuid from datetime import datetime from typing import Union from .conversation_style import CONVERSATION_STYLE_TYPE from .conversation_style import ConversationStyle from .utilities import get_location_hint_from_locale from .utilities import get_ran_hex from .utilities import guess_locale class ChatHubRequest...
/re_edge_gpt-0.0.6-py3-none-any.whl/re_edge_gpt/request.py
0.505371
0.176814
request.py
pypi
import collections import importlib.util import inspect import logging import os import re import sys from functools import wraps from typing import Callable, TypeVar has_validators = False try: import validators has_validators = True except: pass from .message import Message from .shortestPrefix import...
/re-ircbot-1.7.0.tar.gz/re-ircbot-1.7.0/IrcBot/utils.py
0.607896
0.155206
utils.py
pypi
import socket import struct from enum import Enum from IrcBot.utils import debug, log BUFFSIZE = 2048 class DccServer(Enum): SEND = 0 GET = 1 # Stolen from https://github.com/jaraco/irc/blob/5ee34d886507aea3a9edb045d258098a78d1117b/irc/client.py def ip_num_to_quad(num: int): """Convert an IP number as...
/re-ircbot-1.7.0.tar.gz/re-ircbot-1.7.0/IrcBot/dcc.py
0.798933
0.468243
dcc.py
pypi
from __future__ import annotations import re __pdoc__ = {} class Rstr(str): """ Subclass of str which adds methods for composing regex patterns """ re = re """ `Rstr` contains a reference to the standard library's `re` module. It is not necessary to import `re` separately, you can acces...
/re_patterns-1.1.0-py3-none-any.whl/re_patterns/__init__.py
0.861276
0.86771
__init__.py
pypi
import random from unicorn_binance_websocket_api.exceptions import StreamRecoveryError, UnknownExchange from unicorn_binance_websocket_api.sockets import BinanceWebSocketApiSocket from unicorn_binance_websocket_api.restclient import BinanceWebSocketApiRestclient from unicorn_binance_websocket_api.restserver import Bi...
/re_unicorn_binance_websocket_api-1.41.2-py3-none-any.whl/unicorn_binance_websocket_api/manager.py
0.751101
0.165627
manager.py
pypi
<p align="center"> <img src="https://github.com/chriskiehl/re-wx-images/raw/images/logo/rewx.png"> </p> <p align="center">A Python library for building modern declarative desktop applications</p> <hr/> <table> <tr> <td> <img src="https://github.com/chriskiehl/re-wx-images/raw/images/screenshots/basic-...
/re-wx-0.1.0.tar.gz/re-wx-0.1.0/README.md
0.698227
0.913252
README.md
pypi
import wx from random import randint, random from typing import Callable from typing_extensions import TypedDict from rewx import Component, wsx, create_element, render import rewx.components as c class Parent(Component): """ The main 'container' component. It's the root for all state management. It pass...
/re-wx-0.1.0.tar.gz/re-wx-0.1.0/rewx/examples/issue0003c.py
0.661486
0.244617
issue0003c.py
pypi
import ruamel.yaml from lark import Lark from y.yreference import YReference parser = Lark('''%import common.NUMBER %import common.SIGNED_NUMBER %import common.ESCAPED_STRING %import common.CNAME %import common.WS ?expression: "(" ...
/re_y-2.1.7-py3-none-any.whl/y/yinterpreter.py
0.718594
0.376251
yinterpreter.py
pypi
from ruamel.yaml.comments import CommentedMap, CommentedSeq class YReference: """ A reference to a value in a YAML document. Can be used to interact with YAML documents regardless of whether the value and its parent values exist. """ def __init__(self, context): """ :param contex...
/re_y-2.1.7-py3-none-any.whl/y/yreference.py
0.627951
0.359786
yreference.py
pypi