code stringlengths 114 1.05M | path stringlengths 3 312 | quality_prob float64 0.5 0.99 | learning_prob float64 0.2 1 | filename stringlengths 3 168 | kind stringclasses 1
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# Calibration guide
This guide describes `recOrder`'s calibration routine with details about its goals, parameters, and evaluation metrics.
## Why calibrate?
`recOrder` sends commands via Micro-Manager (or a TriggerScope) to apply voltages to the liquid crystals which modify the polarization of the light that illumi... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/docs/calibration-guide.md | 0.950755 | 0.990936 | calibration-guide.md | pypi |
from pathlib import Path
import click
import numpy as np
from iohub import open_ome_zarr
from waveorder.models import (
inplane_oriented_thick_pol3d,
isotropic_fluorescent_thick_3d,
isotropic_thin_3d,
phase_thick_3d,
)
from recOrder.cli.parsing import (
config_filepath,
input_position_dirpaths... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/cli/compute_transfer_function.py | 0.875121 | 0.397295 | compute_transfer_function.py | pypi |
import itertools
from functools import partial
from pathlib import Path
import click
import numpy as np
import torch
import torch.multiprocessing as mp
from iohub import open_ome_zarr
from recOrder.cli import apply_inverse_models
from recOrder.cli.parsing import (
config_filepath,
input_position_dirpaths,
... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/cli/apply_inverse_transfer_function.py | 0.723212 | 0.224204 | apply_inverse_transfer_function.py | pypi |
import numpy as np
import torch
from waveorder.models import (
inplane_oriented_thick_pol3d,
isotropic_fluorescent_thick_3d,
isotropic_thin_3d,
phase_thick_3d,
)
def radians_to_nanometers(retardance_rad, wavelength_illumination_um):
"""
waveorder returns retardance in radians, while recorder d... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/cli/apply_inverse_models.py | 0.916391 | 0.579757 | apply_inverse_models.py | pypi |
from pathlib import Path
from typing import Callable
import click
import torch.multiprocessing as mp
from iohub.ngff import Plate, open_ome_zarr
from natsort import natsorted
from recOrder.cli.option_eat_all import OptionEatAll
def _validate_and_process_paths(
ctx: click.Context, opt: click.Option, value: str
)... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/cli/parsing.py | 0.656108 | 0.265374 | parsing.py | pypi |
import glob
import json
import os
import time
import numpy as np
from iohub import read_micromanager
from pycromanager import Studio
def generate_acq_settings(
mm,
channel_group,
channels=None,
zstart=None,
zend=None,
zstep=None,
save_dir=None,
prefix=None,
keep_shutter_open_chann... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/acq/acq_functions.py | 0.599837 | 0.219861 | acq_functions.py | pypi |
import shutil
from pathlib import Path
from iohub import open_ome_zarr
from napari.utils.notifications import show_warning
from platformdirs import user_data_dir
from wget import download
def download_and_unzip() -> tuple[Path]:
"""Downloads sample data .zip from zenodo, unzips, and returns Paths to the .zarr da... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/scripts/samples.py | 0.49707 | 0.424233 | samples.py | pypi |
import random
import time
from contextlib import contextmanager
import napari
from pycromanager import Core
from recOrder.plugin.main_widget import MainWidget
SAVE_DIR = "."
SWING = 0.05
CAL_REPEATS = 3
BKG_REPEATS = 3
@contextmanager
def stage_detour(app: MainWidget, dx: float, dy: float, wait=5):
"""Context... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/scripts/repeat-cal-acq-rec.py | 0.617974 | 0.594257 | repeat-cal-acq-rec.py | pypi |
import time
from contextlib import contextmanager
import numpy as np
@contextmanager
def suspend_live_sm(snap_manager):
"""Context manager that suspends/unsuspends MM live mode for `SnapLiveManager`.
Parameters
----------
snap_manager : object
`org.micromanager.internal.SnapLiveManager` obje... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/io/core_functions.py | 0.848157 | 0.741417 | core_functions.py | pypi |
import os
import textwrap
from pathlib import Path
from typing import Literal, Union
import numpy as np
import psutil
import torch
import yaml
from colorspacious import cspace_convert
from iohub import open_ome_zarr
from matplotlib.colors import hsv_to_rgb
from waveorder.waveorder_reconstructor import waveorder_micros... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/io/utils.py | 0.853364 | 0.465691 | utils.py | pypi |
import json
import os
from natsort import natsorted
def load_json(path):
with open(path, "r") as f:
data = json.load(f)
return data
def get_last_metadata_file(path):
last_metadata_file = natsorted(
[
file
for file in os.listdir(path)
if file.startswi... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/io/metadata_reader.py | 0.675015 | 0.175167 | metadata_reader.py | pypi |
from __future__ import annotations
import json
import logging
from pathlib import Path
# type hint/check
from typing import TYPE_CHECKING
import numpy as np
from iohub import open_ome_zarr
from napari.qt.threading import WorkerBase, WorkerBaseSignals, thread_worker
from qtpy.QtCore import Signal
from recOrder.calib... | /recOrder-napari-0.4.0.tar.gz/recOrder-napari-0.4.0/recOrder/calib/calibration_workers.py | 0.868994 | 0.172694 | calibration_workers.py | pypi |
[](https://doi.org/10.21105/joss.02014)
[recan](#recan)
[recan web version](#recan-web-version)
[Requirements](#requirements)
[Intallation](#intallation)
[Usage example](#usage-example)
[Some notes on usage](#some-notes-on-usage)
[Automated test... | /recan-0.5.tar.gz/recan-0.5/README.md | 0.448909 | 0.909063 | README.md | pypi |
from __future__ import absolute_import, annotations
import csv
import itertools
import json
import logging
import re
import typing as t
from enum import Enum
from pathlib import Path
import graphviz as gv
import networkx as nx
import pendulum
from lxml import html
from . import dt, utils
from .edge import Edge
from ... | /ReCAP-Argument-Graph-0.1.45.tar.gz/ReCAP-Argument-Graph-0.1.45/recap_argument_graph/graph.py | 0.841631 | 0.288494 | graph.py | pypi |
from __future__ import annotations
import copy
import inspect
from re import fullmatch
from typing import Any
ALIAS_REGEX = r"^[a-zA-Z_][a-zA-Z0-9_]*(?:\.[a-zA-Z_][a-zA-Z0-9_]*)+$"
class RecapType:
"""Base class for all Recap types."""
def __init__(
self,
type_: str,
logical: str | ... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/types.py | 0.909857 | 0.254578 | types.py | pypi |
from __future__ import annotations
from abc import ABC
from typing import Any, List, Protocol, Tuple
from recap.types import StructType
class DbapiClient(ABC):
def __init__(self, connection: Connection, converter: DbapiConverter) -> None:
self.connection = connection
self.converter = converter
... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/clients/dbapi.py | 0.882047 | 0.271949 | dbapi.py | pypi |
from __future__ import annotations
from contextlib import contextmanager
from typing import Any, Generator
from pymetastore.metastore import HMS, HTable
from pymetastore.stats import (
BinaryTypeStats,
BooleanTypeStats,
DateTypeStats,
DecimalTypeStats,
DoubleTypeStats,
LongTypeStats,
Strin... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/clients/hive_metastore.py | 0.823044 | 0.272534 | hive_metastore.py | pypi |
from __future__ import annotations
from contextlib import contextmanager
from importlib import import_module
from typing import Generator, Protocol
from urllib.parse import parse_qs, urlparse
from recap.types import StructType
CLIENTS = {
"bigquery": "recap.clients.bigquery.BigQueryClient",
"http+csr": "reca... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/clients/__init__.py | 0.880052 | 0.287962 | __init__.py | pypi |
from __future__ import annotations
from pymetastore.htypes import (
HCharType,
HDecimalType,
HListType,
HMapType,
HPrimitiveType,
HStructType,
HType,
HUnionType,
HVarcharType,
PrimitiveCategory,
)
from pymetastore.metastore import HColumn, HTable
from recap.types import (
B... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/converters/hive_metastore.py | 0.422505 | 0.353066 | hive_metastore.py | pypi |
from typing import Any
from recap.converters.dbapi import DbapiConverter
from recap.types import BoolType, BytesType, FloatType, IntType, RecapType, StringType
class SnowflakeConverter(DbapiConverter):
def _parse_type(self, column_props: dict[str, Any]) -> RecapType:
data_type = column_props["DATA_TYPE"]... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/converters/snowflake.py | 0.716417 | 0.337531 | snowflake.py | pypi |
import json
from typing import Any
from recap.types import (
BoolType,
BytesType,
EnumType,
FloatType,
IntType,
ListType,
MapType,
NullType,
ProxyType,
RecapType,
RecapTypeRegistry,
StringType,
StructType,
UnionType,
)
class AvroConverter:
def __init__(self... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/converters/avro.py | 0.71403 | 0.329769 | avro.py | pypi |
from math import ceil
from typing import Any
from recap.converters.dbapi import DbapiConverter
from recap.types import BoolType, BytesType, FloatType, IntType, RecapType, StringType
MAX_FIELD_SIZE = 1073741824
class PostgresqlConverter(DbapiConverter):
def _parse_type(self, column_props: dict[str, Any]) -> Reca... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/converters/postgresql.py | 0.66236 | 0.292772 | postgresql.py | pypi |
from __future__ import annotations
from google.cloud import bigquery
from recap.types import (
BoolType,
BytesType,
FloatType,
IntType,
ListType,
StringType,
StructType,
)
class BigQueryConverter:
def to_recap(self, fields: list[bigquery.SchemaField]) -> StructType:
recap_fie... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/converters/bigquery.py | 0.63443 | 0.265729 | bigquery.py | pypi |
from typing import Any
from recap.converters.dbapi import DbapiConverter
from recap.types import BytesType, FloatType, IntType, RecapType, StringType
class MysqlConverter(DbapiConverter):
def _parse_type(self, column_props: dict[str, Any]) -> RecapType:
data_type = column_props["DATA_TYPE"].lower()
... | /recap_core-0.8.9.tar.gz/recap_core-0.8.9/recap/converters/mysql.py | 0.831417 | 0.345574 | mysql.py | pypi |
import shutil
import typing as t
from enum import Enum
from pathlib import Path
import arguebuf as ag
import typer
from recap_utils import graph_translator, model
cli = typer.Typer()
@cli.command()
def translate(
input_folder: Path,
source_lang: str,
target_lang: str,
auth_key: str,
input_glob:... | /ReCAP-Utils-0.2.1.tar.gz/ReCAP-Utils-0.2.1/recap_utils/graph.py | 0.439988 | 0.26947 | graph.py | pypi |
import base64
import cgi
try:
from Crypto.Cipher import AES
except:
raise Exception ("You need the pycrpyto library: http://cheeseshop.python.org/pypi/pycrypto/")
MAIL_HIDE_BASE="http://www.google.com/recaptcha/mailhide"
def asurl (email,
public_key,
private_key):
"""Wra... | /recaptcha-appengine-1.0.3.tar.gz/recaptcha-appengine-1.0.3/recaptcha/client/mailhide.py | 0.581422 | 0.195249 | mailhide.py | pypi |
import os
import time
import typing
from contextlib import suppress
from urllib.parse import quote
from urllib.request import getproxies
import pydub
import requests
from loguru import logger
from playwright.sync_api import Page, Locator, expect, FrameLocator
from playwright.sync_api import TimeoutError
from speech_re... | /recaptcha-challenger-0.0.1.tar.gz/recaptcha-challenger-0.0.1/recaptcha_challenger/core.py | 0.579995 | 0.150746 | core.py | pypi |
import cv2
import numpy as np
from .kernel import ModelHub
class YOLO:
"""YOLO model for image classification"""
classes = [
"person",
"bicycle",
"car",
"motorcycle",
"airplane",
"bus",
"train",
"truck",
"boat",
"traffic light",... | /recaptcha-challenger-0.0.1.tar.gz/recaptcha-challenger-0.0.1/recaptcha_challenger/solutions/yolo.py | 0.738198 | 0.426501 | yolo.py | pypi |
import base64
import cgi
try:
from Crypto.Cipher import AES
except:
raise Exception ("You need the pycrpyto library: http://cheeseshop.python.org/pypi/pycrypto/")
MAIL_HIDE_BASE="http://www.google.com/recaptcha/mailhide"
def asurl (email,
public_key,
private_key):
"""Wra... | /recaptcha-client-1.0.6.tar.gz/recaptcha-client-1.0.6/recaptcha/client/mailhide.py | 0.581422 | 0.195249 | mailhide.py | pypi |
import recastapi
import recastapi.user.read
from termcolor import colored
import urllib
import yaml
import json
def scan_response(scan_response_id = None, scan_request_id = None):
"""List request depending on criteria
If all variables are none all requests returned
:param uuid: ID of the request(option... | /recast-api-0.1.0.tar.gz/recast-api-0.1.0/recastapi/response/read.py | 0.440951 | 0.172346 | read.py | pypi |
import recastapi.request.read
import recastapi.user.read
import uuid
import os
def scan_request(analysis_id,
title,
description_model,
reason_for_request,
additional_information,
status="Incomplete",
):
"""Creates... | /recast-api-0.1.0.tar.gz/recast-api-0.1.0/recastapi/request/write.py | 0.564339 | 0.217109 | write.py | pypi |
# [Bootstrap](http://getbootstrap.com)
[](https://bootstrap-slack.herokuapp.com)
[](https://www.npmjs.com/package/bootstrap)
[![Build Status]... | /recast-control-center-prototype-0.1.0.tar.gz/recast-control-center-prototype-0.1.0/recastcontrolcenter/static/bower_components/bootstrap/README.md | 0.716913 | 0.881819 | README.md | pypi |
# vis.js
[](https://gitter.im/vis-js/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
<a href="https://github.com/almende/vis/blob/develop/misc/we_need_help.md">
<img align="right" src="https... | /recast-control-center-prototype-0.1.0.tar.gz/recast-control-center-prototype-0.1.0/recastcontrolcenter/static/bower_components/vis/README.md | 0.667581 | 0.85741 | README.md | pypi |
import boto3
import logging
from tenacity import *
from re import search, sub
__REGION__ = 'us-east-1'
def set_region(region):
global __REGION__
__REGION__ = region
def get_queues(queue_name_regex: str = None, region: str = __REGION__):
"""
This function will return a list of queue information. If... | /recastpy-0.0.72-py3-none-any.whl/RecastPy/aws/batch.py | 0.67822 | 0.358465 | batch.py | pypi |
import colorama
from colorama import Fore, Back, Style
import StringIO
colorama.init()
class Column(object):
def __init__(self, layout):
self.width = layout.config.get_column_width(self)
def format(self, data):
return self.FORMAT % data
class DateColumn(Column):
NAME = "date"
FORMAT ... | /recat-color-0.1.1.tar.gz/recat-color-0.1.1/logcatcolor/column.py | 0.488039 | 0.172886 | column.py | pypi |
import logging
from logging import getLogger
import torch
from recbole.utils import init_logger, init_seed, set_color
from recbole_cdr.config import CDRConfig
from recbole_cdr.data import create_dataset, data_preparation
from recbole_cdr.utils import get_model, get_trainer
def run_recbole_cdr(model=None, config_fil... | /recbole-cdr-0.1.0.tar.gz/recbole-cdr-0.1.0/recbole_cdr/quick_start/quick_start.py | 0.850624 | 0.260201 | quick_start.py | pypi |
import os
import copy
from recbole.config.configurator import Config
from recbole.evaluator import metric_types, smaller_metrics
from recbole.utils import EvaluatorType, ModelType, InputType
from recbole_cdr.utils import get_model, train_mode2state
class CDRConfig(Config):
""" Configurator module that load the d... | /recbole-cdr-0.1.0.tar.gz/recbole-cdr-0.1.0/recbole_cdr/config/configurator.py | 0.643105 | 0.268914 | configurator.py | pypi |
import os
from collections import ChainMap
import torch
import numpy as np
import pandas as pd
from logging import getLogger
from scipy.sparse import coo_matrix
from recbole.data.dataset import Dataset
from recbole.utils import FeatureSource, FeatureType, set_color
class CrossDomainSingleDataset(Dataset):
def _... | /recbole-cdr-0.1.0.tar.gz/recbole-cdr-0.1.0/recbole_cdr/data/dataset.py | 0.656878 | 0.216239 | dataset.py | pypi |
from logging import getLogger
import numpy as np
import torch
from recbole.data.interaction import Interaction
from recbole.data.dataloader.abstract_dataloader import AbstractDataLoader
from recbole.data.dataloader.general_dataloader import TrainDataLoader, FullSortEvalDataLoader
from recbole_cdr.utils import CrossDo... | /recbole-cdr-0.1.0.tar.gz/recbole-cdr-0.1.0/recbole_cdr/data/dataloader.py | 0.866147 | 0.290138 | dataloader.py | pypi |
import importlib
import os
import pickle
from recbole.data.dataloader import NegSampleEvalDataLoader
from recbole.data.utils import load_split_dataloaders, save_split_dataloaders, create_samplers
from recbole.utils import set_color
from recbole.utils.argument_list import dataset_arguments
from recbole_cdr.data.datalo... | /recbole-cdr-0.1.0.tar.gz/recbole-cdr-0.1.0/recbole_cdr/data/utils.py | 0.746416 | 0.26149 | utils.py | pypi |
--------------------------------------------------------------------------------
# RecBole (伯乐)
*“世有伯乐，然后有千里马。千里马常有，而伯乐不常有。”——韩愈《马说》*
[](https://pypi.org/project/recbole/)
[![Conda Latest Release](https://anaconda.org/aibox... | /recbole-1.0.1.tar.gz/recbole-1.0.1/README.md | 0.752104 | 0.93611 | README.md | pypi |
from asyncio import Task, TimeoutError, create_task
from inspect import iscoroutinefunction, isfunction
from typing import Any, Awaitable, Callable, Dict, Final, List, Optional, Set, Union
from aioredis import ConnectionPool, Redis
from aioredis.client import PubSub
from async_timeout import timeout as async_timeout_... | /recc_cache-2.1.0-py3-none-any.whl/recc_cache/redis/redis_cache.py | 0.752104 | 0.222806 | redis_cache.py | pypi |
from abc import ABCMeta, abstractmethod
from enum import Enum
from typing import Any, List, Tuple
QueryString = str
Arguments = List[Any]
BuildResult = Tuple[QueryString, Arguments]
NO_SKIP_NULL_IN_WHERE = False
"""
NULLs in the where clause are not skipped.
"""
class Operator(Enum):
EQUAL = (0, "=")
GREAT... | /recc_database-2.1.0-py3-none-any.whl/recc_database/database/query_builder.py | 0.875973 | 0.19235 | query_builder.py | pypi |
from typing import Any, List, Optional, Type, TypeVar
from asyncpg import InvalidCatalogNameError, connect, create_pool
from asyncpg.connection import Connection
from asyncpg.pool import Pool, PoolAcquireContext
from asyncpg.protocol import Record
from orjson import dumps, loads
from recc_database.database.query_uti... | /recc_database-2.1.0-py3-none-any.whl/recc_database/database/mixin/_pg_base.py | 0.824709 | 0.164651 | _pg_base.py | pypi |
from dataclasses import dataclass
from datetime import datetime
from hashlib import sha256
from typing import Optional
from recc_database.packet.preference import PreferenceA
@dataclass
class User:
"""It is mapped to the `user` table in the database."""
uid: int
username: str
password: str
salt... | /recc_database-2.1.0-py3-none-any.whl/recc_database/packet/user.py | 0.903837 | 0.212324 | user.py | pypi |
from dataclasses import dataclass
from datetime import datetime
from io import BytesIO
from typing import Dict, Iterable, List, Optional, Tuple
from minio import Minio, S3Error
from minio.commonconfig import ENABLED, Filter, Tag, Tags
from minio.deleteobjects import DeleteObject
from minio.lifecycleconfig import Expi... | /recc_storage-2.1.0-py3-none-any.whl/recc_storage/storage.py | 0.863679 | 0.191347 | storage.py | pypi |
from typing import Optional, List, Union, Dict
from itertools import combinations
import pandas as pd # type: ignore
from pymystem3 import Mystem # type: ignore
try:
from cat_model import PredictCategory # type: ignore
except ImportError:
from receipt_parser.cat_model import PredictCategory # type: ignore
... | /receipt_parser-0.0.28-py3-none-any.whl/receipt_parser/finder.py | 0.944587 | 0.58053 | finder.py | pypi |
# pylint: skip-file
from typing import Dict, List
import youtokentome as yttm # type: ignore
import torch
from torch import nn
class CategoryClassifier(nn.Module):
"""A simple perceptron baseline moedel."""
def __init__(
self, vocab_size: int, embed_dim: int, num_class: int, pad_idx: int = 0
):
... | /receipt_parser-0.0.28-py3-none-any.whl/receipt_parser/cat_model.py | 0.928425 | 0.58059 | cat_model.py | pypi |
import os
from typing import Union, Optional, Dict
import wget # type: ignore
import pandas as pd # type: ignore
try:
from receipt_parser.finder import Finder # type: ignore
from receipt_parser.normalizer import Normalizer # type: ignore
except ImportError:
from finder import Finder # type: ignore
... | /receipt_parser-0.0.28-py3-none-any.whl/receipt_parser/receipt_parser.py | 0.876092 | 0.226784 | receipt_parser.py | pypi |
import re
from typing import Optional, Union, Dict
import pandas as pd # type: ignore
from pandarallel import pandarallel # type: ignore
pandarallel.initialize(progress_bar=False, verbose=0)
try:
# pylint: disable=line-too-long
from receipt_parser.dicts import PRODUCTS, BRANDS, SLASH_PRODUCTS, BRANDS_WITH_N... | /receipt_parser-0.0.28-py3-none-any.whl/receipt_parser/normalizer.py | 0.867106 | 0.370795 | normalizer.py | pypi |
import argparse
import re
from typing import TypedDict
import receipt_scanner
from receipt_scanner.core import scan
class Arguments(TypedDict):
image_location: str
allowed_characters: str | None
regular_expression: re.Pattern | None
debug: bool
def dispatcher() -> None:
parser = generate_parser... | /receipt_scanner-0.3.2-py3-none-any.whl/receipt_scanner/cli.py | 0.575588 | 0.204878 | cli.py | pypi |
from logging import getLogger
import cv2
import numpy as np
from receipt_scanner.image.debug import debug_show
from receipt_scanner.image.errors import NoContourFoundError
logger = getLogger(__name__)
def contour_to_rect(contour: np.ndarray, resize_ratio: float) -> np.ndarray:
points = contour.reshape(4, 2)
... | /receipt_scanner-0.3.2-py3-none-any.whl/receipt_scanner/image/contour.py | 0.641759 | 0.465995 | contour.py | pypi |
from logging import getLogger
import numpy as np
from receipt_scanner.image.constants import (
EDGE_DETECTION_TARGET_WIDTH,
TEXT_CLEANUP_TARGET_WIDTH,
)
from receipt_scanner.image.contour import find_contour
from receipt_scanner.image.debug import visualize_contour_on_image
from receipt_scanner.image.filters ... | /receipt_scanner-0.3.2-py3-none-any.whl/receipt_scanner/image/core.py | 0.50415 | 0.164617 | core.py | pypi |
from logging import getLogger
import cv2
import numpy as np
from receipt_scanner.image.contour import contour_to_rect
from receipt_scanner.image.debug import debug_show
from receipt_scanner.image.filters.base_filter import Filter
logger = getLogger(__name__)
class PerspectiveWrapperFilter(Filter):
def __init__... | /receipt_scanner-0.3.2-py3-none-any.whl/receipt_scanner/image/filters/perspective_wrapper.py | 0.823612 | 0.277072 | perspective_wrapper.py | pypi |
import numpy as np
from typing import List
from shapely.geometry import Polygon
class Metrics:
@staticmethod
def shape_shifter(arr):
return [(arr[0,0], arr[0,1]), (arr[1,0], arr[0,1]), (arr[1,0], arr[1,1]), (arr[0,0], arr[1,1])]
@staticmethod
def polygon_IOU_old(arr1:np.array, arr2:np.array):... | /analyzer/metrics.py | 0.934138 | 0.625896 | metrics.py | pypi |
import requests
import datetime
# Class for messages
class message():
def __init__(self, text='', from_number='', to_number='', date=datetime.datetime.now()) -> None:
self.text = text
self.from_number = from_number
self.to_number = to_number
self.date = date
def help():
retu... | /receive_sms-1.0.4-py3-none-any.whl/receive_sms/__init__.py | 0.456168 | 0.219714 | __init__.py | pypi |
import calendar
import time
from recently_played_playlists.spotify.util import get_spotify_client_for_username
from recently_played_playlists.db.db import get_all_users, get_time_of_last_track_play, save_track_if_not_exists, save_played_song, update_time_of_last_track_play
def iso_8601_timestamp_with_millis_and_timez... | /recently_played_playlists-1.0.1-py3-none-any.whl/recently_played_playlists/spotify/save_recently_played_tracks.py | 0.666931 | 0.266551 | save_recently_played_tracks.py | pypi |
<p align="center"><a href="http://www.recentrifuge.org" target="_blank">
<img src="https://raw.githubusercontent.com/khyox/rcf-aux/master/RCFheader.png" alt="Recentrifuge" width="900px"/></a></p><hr>
<p align="center"><b>Robust comparative analysis and contamination removal for metagenomics</b>
</p>
____
[:
parser = argparse.ArgumentParser(description='Given a set of gene features, create motif matrices')
parser.add_argument('feat_file', help='feature file, created, for example, by pars... | /receptor_digger-0.5.10-py3-none-any.whl/digger/calc_motifs.py | 0.441673 | 0.263434 | calc_motifs.py | pypi |
import argparse
from receptor_utils import simple_bio_seq as simple
import csv
try:
from dig_utils import set_motif_params, read_motifs, read_vs, process_sequence, process_output, get_genbank_sequence
except:
from digger.dig_utils import set_motif_params, read_motifs, read_vs, process_sequence, process_output,... | /receptor_digger-0.5.10-py3-none-any.whl/digger/dig_sequence.py | 0.457621 | 0.164987 | dig_sequence.py | pypi |
# Copyright (c) 2023 William Lees
# This source code, and any executable file compiled or derived from it, is governed by the European Union Public License v. 1.2,
# the English version of which is available here: https://perma.cc/DK5U-NDVE
import argparse
import json
import csv
try:
from receptor_germline_tool... | /receptor_germline_tools-0.0.4-py3-none-any.whl/receptor_germline_tools/annotate_rearrangements.py | 0.616474 | 0.151059 | annotate_rearrangements.py | pypi |
# Copyright (c) 2021 William Lees
# This source code, and any executable file compiled or derived from it, is governed by the European Union Public License v. 1.2,
# the English version of which is available here: https://perma.cc/DK5U-NDVE
import csv
from receptor_utils import simple_bio_seq as simple
import argpa... | /receptor_utils-0.0.15-py3-none-any.whl/receptor_utils/make_igblast_ndm.py | 0.61832 | 0.243148 | make_igblast_ndm.py | pypi |
# Copyright (c) 2021 William Lees
# This source code, and any executable file compiled or derived from it, is governed by the European Union Public License v. 1.2,
# the English version of which is available here: https://perma.cc/DK5U-NDVE
import re
from receptor_utils import simple_bio_seq as simple
def nt_diff(... | /receptor_utils-0.0.15-py3-none-any.whl/receptor_utils/number_ighv.py | 0.573798 | 0.456228 | number_ighv.py | pypi |
# Copyright (c) 2021 William Lees
# This source code, and any executable file compiled or derived from it, is governed by the European Union Public License v. 1.2,
# the English version of which is available here: https://perma.cc/DK5U-NDVE
from Bio import SeqIO
from Bio.Seq import Seq
from Bio.SeqRecord import Seq... | /receptor_utils-0.0.15-py3-none-any.whl/receptor_utils/simple_bio_seq.py | 0.845337 | 0.345326 | simple_bio_seq.py | pypi |
# Copyright (c) 2021 William Lees
# This source code, and any executable file compiled or derived from it, is governed by the European Union Public License v. 1.2,
# the English version of which is available here: https://perma.cc/DK5U-NDVE
import csv
from receptor_utils import simple_bio_seq as simple
import argpa... | /receptor_utils-0.0.15-py3-none-any.whl/receptor_utils/annotate_j.py | 0.655336 | 0.294913 | annotate_j.py | pypi |
import logging
import time
from urllib.parse import urlencode
import requests
log = logging.getLogger(__name__)
class RechargeResource(object):
"""
Resource from the Recharge API. This class handles
logging, sending requests, parsing JSON, and rate
limiting.
Refer to the API docs to see the ex... | /recharge-api-1.4.1.tar.gz/recharge-api-1.4.1/recharge/resources.py | 0.636918 | 0.221256 | resources.py | pypi |
## Rechtspraak extractor
This library contains two functions to get rechtspraak data and metadata from the API.
## Version
Python 3.9
## Contributors
<!-- readme: contributors,gijsvd -start -->
<table>
<tr>
<td align="center">
<a href="https://github.com/pranavnbapat">
<img src="https://avata... | /rechtspraak_extractor-1.1.19.tar.gz/rechtspraak_extractor-1.1.19/README.md | 0.576304 | 0.847084 | README.md | pypi |
```
from zarr_rechunker import zarr_rechunker
import numpy as np
max_mem = 2
shape = (16,)
source_chunks = (3,)
target_chunks = (7,)
itemsize = 4
rc, ic, wc = zarr_rechunker.rechunking_plan(shape, source_chunks, target_chunks, itemsize, max_mem)
print(rc, ic, wc)
print(itemsize * np.prod(rc) / max_mem)
print(itemsiz... | /rechunker-0.5.2.tar.gz/rechunker-0.5.2/algorithm.ipynb | 0.627152 | 0.419588 | algorithm.ipynb | pypi |
# Recipe Box
This program takes a recipe URL, scrapes the recipe website, converts it to [Markdown](https://daringfireball.net/projects/markdown/syntax)
format and store it in your local [Zettelkasten](https://www.youtube.com/watch?v=XUltI4v_UU4).
I use the free [Obsidian](https://obsidi... | /recipe_box-0.1.2.tar.gz/recipe_box-0.1.2/README.md | 0.641198 | 0.952442 | README.md | pypi |
import threading
import unicodedata
from dogpile.cache import make_region
from dogpile.cache.util import sha1_mangle_key
def async_creation_runner(cache, somekey, creator, mutex):
""" Used by build_region as the async_creation_runner to create keys
asyncronously. So dogpile.core:Lock when appropriate can avo... | /recipe_caching-0.6.0.tar.gz/recipe_caching-0.6.0/recipe_caching/regions.py | 0.677047 | 0.420362 | regions.py | pypi |
from sqlalchemy.orm.interfaces import MapperOption
class FromCache(MapperOption):
"""Specifies that a Query should load results from a cache."""
propagate_to_loaders = False
def __init__(self, region='default', cache_key=None, cache_prefix=None):
"""Construct a new FromCache.
:param regi... | /recipe_caching-0.6.0.tar.gz/recipe_caching-0.6.0/recipe_caching/mappers.py | 0.916961 | 0.503174 | mappers.py | pypi |
r"""
Recipe Grid extends Markdown syntax to provide a convenient way of describing
recipes within a document. See the :ref:`markdown_reference` for an overview of
these extensions.
A recipe markdown document is compiled using:
.. autofunction:: compile_markdown
This produces a :py:class:`MarkdownRecipe` object which... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/markdown.py | 0.943653 | 0.52829 | markdown.py | pypi |
from typing import (
Optional,
Union,
List,
NamedTuple,
Set,
Tuple,
Mapping,
MutableMapping,
Iterable,
Iterator,
)
from fractions import Fraction
from dataclasses import dataclass, field
import re
__all__ = [
"Definition",
"Unit",
"RelatedUnitSet",
"UNIT_SYST... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/units.py | 0.953934 | 0.568835 | units.py | pypi |
import math
from typing import Callable, Union, FrozenSet
from fractions import Fraction
__all__ = [
"format_float",
"format_fraction",
"format_number",
]
def format_float(number: float, significant_figures: int = 3) -> str:
"""
Format a floating point value in a concise, human-friendly way.
... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/number_formatting.py | 0.91384 | 0.564999 | number_formatting.py | pypi |
from typing import Union, Callable, List, Sequence, Tuple, Any
from collections.abc import Iterable
from fractions import Fraction
from recipe_grid.number_formatting import format_number
Number = Union[int, float, Fraction]
__all__ = ["ScaledValueString"]
class ScaledValueString:
"""
A string which cont... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/scaled_value_string.py | 0.930821 | 0.463748 | scaled_value_string.py | pypi |
r"""
The :py:mod:`recipe_grid.recipe` module defines the Directed Acyclic Graph
(DAG) data structure used to describe recipes.
Overview
========
Recipes are defined as a series of trees, principally consisting of
:py:class:`Ingredient` nodes and :py:class:`Step` nodes.
An :py:class:`Ingredient` node contains a name... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/recipe.py | 0.91685 | 0.851274 | recipe.py | pypi |
from typing import Union, Optional
from fractions import Fraction
from functools import partial
from pathlib import Path
# NB: Used in favour of recipe_grid.markdown.compile_markdown due to unified
# exceptions.
from recipe_grid.static_site.recipe_directory import compile_recipe_markdown
from recipe_grid.static_si... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/static_site/standalone_page.py | 0.936619 | 0.223547 | standalone_page.py | pypi |
from typing import Tuple, NamedTuple, Optional, List
from pathlib import Path
from functools import lru_cache
import re
import marko # type: ignore
from html import unescape
from peggie import ParseError
from recipe_grid.compiler import RecipeCompileError
from recipe_grid.markdown import compile_markdown, Markd... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/static_site/recipe_directory.py | 0.89643 | 0.245096 | recipe_directory.py | pypi |
from typing import (
Union,
List,
Mapping,
MutableMapping,
Optional,
Tuple,
Iterator,
Any,
cast,
)
from pathlib import Path
from functools import partial
from fractions import Fraction
from dataclasses import dataclass, field
from shutil import copyfile
from recipe_grid.static_... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/static_site/website.py | 0.917344 | 0.246593 | website.py | pypi |
from typing import cast, Optional, MutableMapping, List, Union, Tuple
import re
import html
from textwrap import indent
from fractions import Fraction
from xml.sax.saxutils import quoteattr
from recipe_grid.scaled_value_string import ScaledValueString as SVS
from recipe_grid.renderer.table import Table, Cell, B... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/renderer/html.py | 0.891194 | 0.295312 | html.py | pypi |
from typing import cast
from recipe_grid.recipe import (
RecipeTreeNode,
Ingredient,
Reference,
Step,
SubRecipe,
)
from recipe_grid.renderer.table import (
BorderType,
Cell,
Table,
right_pad_table,
combine_tables,
set_border_around_table,
)
def recipe_tree_to_table(
... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/renderer/recipe_to_table.py | 0.892545 | 0.559471 | recipe_to_table.py | pypi |
r"""
The following output-agnostic data structure is used to represent a recipe in
tabular form.
The basic data structure consists of a :py:class:`Table` object which contains
a set of nested lists containing a 2D array of :py:class:`Cell` and
:py:class:`ExtendedCell` objects. Each entry in the array represents a cell... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/renderer/table.py | 0.969843 | 0.928733 | table.py | pypi |
import os
from peggie import compile_grammar, ParseError, RuleExpr, RegexExpr
from recipe_grid.units import ALL_UNITS_REGEX_LITERAL
__all__ = [
"grammar",
"grammar_source",
"prettify_parse_error",
]
grammar_source_path = os.path.join(os.path.dirname(__file__), "grammar.peg")
with open(grammar_source_pa... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/parser/grammar.py | 0.461017 | 0.158272 | grammar.py | pypi |
import sys
from argparse import ArgumentParser
from pathlib import Path
from recipe_grid.number_parser import number
from recipe_grid.static_site.exceptions import StaticSiteError
from recipe_grid.static_site.standalone_page import generate_standalone_page
def main() -> None:
parser = ArgumentParser(
... | /recipe_grid-2.0.3-py3-none-any.whl/recipe_grid/scripts/recipe_grid.py | 0.459804 | 0.167866 | recipe_grid.py | pypi |
from typing import Dict, Optional, Tuple, Union
from requests import Session
from ._abstract import HEADERS, AbstractScraper
class BettyBossi(AbstractScraper):
"""Scrape BettyBossi.ch recipes.
This scraper is particular as the website implements a refresh after
loading the page the first time. It is th... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/bettybossi.py | 0.895222 | 0.338487 | bettybossi.py | pypi |
from ._abstract import AbstractScraper
from ._utils import get_minutes, get_yields, normalize_string
class AllRecipes:
@classmethod
def host(cls):
return "allrecipes.com"
def __new__(cls, url, *args, **kwargs):
if AllRecipesUser.host() in url:
return AllRecipesUser(url, *args,... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/allrecipes.py | 0.776496 | 0.260519 | allrecipes.py | pypi |
from dataclasses import dataclass
from typing import List, Optional
from ._abstract import AbstractScraper
from ._exceptions import ElementNotFoundInHtml
from ._utils import get_minutes, get_yields, normalize_string
@dataclass
class IngredientGroup:
ingredients: List[str]
purpose: Optional[
str
]... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/nihhealthyeating.py | 0.824427 | 0.218013 | nihhealthyeating.py | pypi |
import re
from ._abstract import AbstractScraper
from ._exceptions import ElementNotFoundInHtml
from ._utils import normalize_string
class Valdemarsro(AbstractScraper):
@classmethod
def host(cls):
return "valdemarsro.dk"
def title(self):
return self.soup.h1.get_text().strip()
def ca... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/valdemarsro.py | 0.531696 | 0.241881 | valdemarsro.py | pypi |
import re
from ._abstract import AbstractScraper
from ._utils import get_minutes, get_yields, normalize_string
class NHSHealthierFamilies(AbstractScraper):
@classmethod
def host(cls):
return "nhs.uk"
def author(self):
return "NHS Better Health"
def title(self):
title = norma... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/nhshealthierfamilies.py | 0.536556 | 0.163612 | nhshealthierfamilies.py | pypi |
import re
from bs4 import Tag
from ._abstract import AbstractScraper
from ._utils import normalize_string
"""
NOTE: This website has at least 2 prominent layouts styles, so there are two logic blocks and 2 test cases to
support in ingredients and instructions processing sections.
"""
class FarmhouseDeliver... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/farmhousedelivery.py | 0.433981 | 0.173778 | farmhousedelivery.py | pypi |
import re
from ._abstract import AbstractScraper
from ._utils import get_minutes, get_yields, normalize_string
class WeightWatchers(AbstractScraper):
@classmethod
def host(cls):
return "www.weightwatchers.com"
def author(self):
return "WeightWatchers"
def title(self):
retur... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/weightwatchers.py | 0.569613 | 0.310753 | weightwatchers.py | pypi |
from ._abstract import AbstractScraper
from ._utils import get_minutes, get_yields
class Bodybuilding(AbstractScraper):
@classmethod
def host(cls):
return "bodybuilding.com"
def author(self):
return self.soup.find("span", {"class": "bb-recipe-author-name"}).get_text()
def title(self)... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/bodybuilding.py | 0.472683 | 0.174973 | bodybuilding.py | pypi |
from ._utils import normalize_string
from .weightwatchers import WeightWatchers
# collect the differences between public and non-public weightwatcher recipes in this class
class WeightWatchersPublic(WeightWatchers):
@classmethod
def host(cls):
return "www.weightwatchers.com"
def _findDataContain... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/weightwatcherspublic.py | 0.707203 | 0.281952 | weightwatcherspublic.py | pypi |
from ._abstract import AbstractScraper
from ._utils import get_minutes, get_yields, normalize_string
class Vegolosi(AbstractScraper):
@classmethod
def host(cls):
return "vegolosi.it"
def title(self):
return self.soup.find("h1").get_text().strip()
def author(self):
return sel... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/vegolosi.py | 0.615781 | 0.265565 | vegolosi.py | pypi |
import re
from ._abstract import AbstractScraper
from ._utils import change_keys
def fix_json_ld_property_keys(k):
if k == "ItemListElement":
return "itemListElement"
return k
class TineNo(AbstractScraper):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
#... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/tineno.py | 0.581422 | 0.169131 | tineno.py | pypi |
import re
from ._abstract import AbstractScraper
from ._utils import get_minutes, get_yields, normalize_string
class SunBasket(AbstractScraper):
@classmethod
def host(self, domain="com"):
return f"sunbasket.{domain}"
def title(self):
return self.soup.find("h1").get_text()
def total_... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/sunbasket.py | 0.555435 | 0.188903 | sunbasket.py | pypi |
import inspect
from collections import OrderedDict
from typing import Dict, List, Optional, Tuple, Union
from urllib.parse import urljoin
import requests
from bs4 import BeautifulSoup
from recipe_scrapers.settings import settings
from ._schemaorg import SchemaOrg
# some sites close their content for 'bots', so user... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/_abstract.py | 0.814643 | 0.178025 | _abstract.py | pypi |
from ._abstract import AbstractScraper
from ._utils import get_minutes, get_yields, normalize_string
class MonsieurCuisine(AbstractScraper):
@classmethod
def host(cls):
return "monsieur-cuisine.com"
def author(self):
container = self.soup.find("p", {"class": "recipe_author"})
ret... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/monsieurcuisine.py | 0.570331 | 0.218024 | monsieurcuisine.py | pypi |
from ._abstract import AbstractScraper
from ._utils import get_minutes, get_yields, normalize_string
class WikiCookbook(AbstractScraper):
@classmethod
def host(cls):
return "en.wikibooks.org"
def title(self):
return self.soup.find("h1").get_text().replace("Cookbook:", "")
def total_t... | /recipe_scrapers_ap_fork-14.24.7-py3-none-any.whl/recipe_scrapers/wikicookbook.py | 0.510496 | 0.201617 | wikicookbook.py | pypi |
import re
from datetime import timedelta
from ._types import Duration, ISO8601_Duration
ISO8601_DURATION_REGEX = re.compile(
r"^P(?!$)"
r"(?P<PY>\d+(?:\.\d+)?Y)?"
r"(?P<PM>\d+(?:\.\d+)?M)?"
r"(?P<PW>\d+(?:\.\d+)?W)?"
r"(?P<PD>\d+(?:\.\d+)?D)?"
r"(T(?=\d)"
r"(?P<TH>\d+(?:\.\d+)?H)?"
r"... | /recipe_scrapers_sage-0.1.0-py3-none-any.whl/recipe_scrapers_sage/utils.py | 0.699768 | 0.304636 | utils.py | pypi |
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