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``` %load_ext autoreload %autoreload 2 import numpy as np import random import torch from collections import defaultdict from scipy.sparse import csr_matrix from sklearn.cluster import AgglomerativeClustering from tqdm.auto import tqdm from src.data.filesystem import fopen from src.data.ancestry import load_train_test...
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##### Copyright 2019 The TensorFlow Authors. ``` #@title Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # https://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or ...
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``` #hide #skip ! [ -e /content ] && pip install -Uqq fastai # upgrade fastai on colab # default_exp losses # default_cls_lvl 3 #export from fastai.imports import * from fastai.torch_imports import * from fastai.torch_core import * from fastai.layers import * #hide from nbdev.showdoc import * ``` # Loss Functions > C...
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<img src="images/qiskit-heading.gif" alt="Note: In order for images to show up in this jupyter notebook you need to select File => Trusted Notebook" width="500 px" align="left"> # Qiskit Tutorials *** Welcome Qiskitters. The easiest way to get started is to use [the Binder image](https://mybinder.org/v2/gh/qiskit/...
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``` # HIDDEN from datascience import * %matplotlib inline import matplotlib.pyplot as plots plots.style.use('fivethirtyeight') import math import numpy as np from scipy import stats import ipywidgets as widgets import nbinteract as nbi ``` ### The Central Limit Theorem ### Very few of the data histograms that we have ...
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# Plotting aggregate variables Pyam offers many great visualisation and analysis tools. In this notebook we highlight the `aggregate` and `stack_plot` methods of an `IamDataFrame`. ``` import numpy as np import pandas as pd import pyam %matplotlib inline import matplotlib.pyplot as plt ``` Here we provide some samp...
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Author: Saeed Amen (@thalesians) - Managing Director & Co-founder of [the Thalesians](http://www.thalesians.com) ## Introduction With the UK general election in early May 2015, we thought it would be a fun exercise to demonstrate how you can investigate market price action over historial elections. We shall be using ...
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# Introduction to Bayesian Optimization with GPyOpt ### Written by Javier Gonzalez, Amazon Research Cambridge *Last updated Monday, 22 May 2017.* ===================================================================================================== 1. **How to use GPyOpt?** 2. **The Basics of Bayesian Optimization...
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<a href="https://colab.research.google.com/github/Cloblak/aipi540_deeplearning/blob/main/1D_CNN_Attempts/1D_CNN_asof_111312FEB.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a> ``` !pip install alpaca_trade_api ``` Features To Consider - Targets are...
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# Spark on Kubernetes Preparing the notebook https://towardsdatascience.com/make-kubeflow-into-your-own-data-science-workspace-cc8162969e29 ## Setup service account permissions https://github.com/kubeflow/kubeflow/issues/4306 issue with launching spark-operator from jupyter notebook Run command in your shell (not i...
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``` from Maze import Maze from sarsa_agent import SarsaAgent import numpy as np import matplotlib.pyplot as plt from matplotlib import animation from IPython.display import HTML ``` ## Designing the maze ``` arr=np.array([[0,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0], [0,1,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,...
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## VAE MNIST example: BO in a latent space In this tutorial, we use the MNIST dataset and some standard PyTorch examples to show a synthetic problem where the input to the objective function is a `28 x 28` image. The main idea is to train a [variational auto-encoder (VAE)](https://arxiv.org/abs/1312.6114) on the MNIST...
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``` import numpy as np import matplotlib.pyplot as plt import pandas as pd import matplotlib %matplotlib inline matplotlib.rcParams['figure.figsize'] = (12, 8) # set default figure size, 8in by 6in ``` # Ensemble Learning Sometimes aggregrates or ensembles of many different opinions on a question can perform as well ...
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<a href="https://colab.research.google.com/github/NeuromatchAcademy/course-content/blob/master/tutorials/W1D2_ModelingPractice/student/W1D2_Tutorial2.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a> # Neuromatch Academy: Week1, Day 2, Tutorial 2 #Tu...
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# Welcome to nbdev > Create delightful python projects using Jupyter Notebooks - image:images/nbdev_source.gif `nbdev` is a library that allows you to develop a python library in [Jupyter Notebooks](https://jupyter.org/), putting all your code, tests and documentation in one place. That is: you now have a true [liter...
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# Study Path And Where To Find Resources **Author: Yulun Wu** Welcome aboard! AI is one of the most prospective fields today. Personally I believe AI technology will start a technology revolution and totally revamp the world as well as our lives. The definition of AI is broad, in AIwaffle Courses, *AI*, *Machine Le...
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``` from nbdev import * %nbdev_default_export merge #export from nbdev.imports import * ``` # Fix merge conflicts > Fix merge conflicts in jupyter notebooks When working with jupyter notebooks (which are json files behind the scenes) and GitHub, it is very common that a merge conflict (that will add new lines in the...
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<a href="https://colab.research.google.com/github/Ivan-Nebogatikov/HumanActivityRecognitionOutliersDetection/blob/main/Processing.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a> Скачиваем данные, преобразуем их в одну таблицу ``` import numpy as np...
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# SF Salaries Exercise - Solutions Welcome to a quick exercise for you to practice your pandas skills! We will be using the [SF Salaries Dataset](https://www.kaggle.com/kaggle/sf-salaries) from Kaggle! Just follow along and complete the tasks outlined in bold below. The tasks will get harder and harder as you go along...
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$\newcommand{\xv}{\mathbf{x}} \newcommand{\wv}{\mathbf{w}} \newcommand{\yv}{\mathbf{y}} \newcommand{\zv}{\mathbf{z}} \newcommand{\uv}{\mathbf{u}} \newcommand{\vv}{\mathbf{v}} \newcommand{\Chi}{\mathcal{X}} \newcommand{\R}{\rm I\!R} \newcommand{\sign}{\text{sign}} \newcommand{\Tm}{\mathbf{T}} \newcommand{\Xm}{...
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# GOOGLE PLAYSTORE ANALYSIS The dataset used in this analysis is taken from [kaggle datasets](https://www.kaggle.com/datasets) In this analysis we took a raw data which is in csv format and then converted it into a dataframe.Performed some operations, cleaning of the data and finally visualizing some necessary conclu...
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_Lambda School Data Science_ # Make explanatory visualizations Tody we will reproduce this [example by FiveThirtyEight:](https://fivethirtyeight.com/features/al-gores-new-movie-exposes-the-big-flaw-in-online-movie-ratings/) ``` from IPython.display import display, Image url = 'https://fivethirtyeight.com/wp-cont...
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# Exam 2 - Gema Castillo García ``` %load_ext sql %config SqlMagic.autocommit=True %sql mysql+pymysql://root:root@127.0.0.1:3306/mysql ``` ## Problem 1: Controls Write a Python script that proves that the lines of data in Germplasm.tsv, and LocusGene are in the same sequence, based on the AGI Locus Code (ATxGxxxxx...
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# Quick Multi-Processing Tests ``` import numpy as np import matplotlib.pyplot as plt from concurrent.futures import ThreadPoolExecutor, ProcessPoolExecutor import time import numba import pandas as pd import pyspark from pyspark.sql import SparkSession ``` Defining a an arbitrary function for testing. The function ...
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``` # Import the libraries import numpy as np import pandas as pd import os import seaborn as sns import matplotlib.pyplot as plt import warnings import numpy as np import itertools import statsmodels.api as sm import matplotlib from textwrap import wrap from matplotlib import ticker from datetime import datetime war...
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# Bayesian Randomized Benchmarking Demo This is a bayesian pyMC3 implementation on top of frequentist interleaved RB from qiskit experiments Based on this [WIP tutorial](https://github.com/Qiskit/qiskit-experiments/blob/main/docs/tutorials/rb_example.ipynb) on july 10 2021 ``` import numpy as np import copy import...
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<a href="https://colab.research.google.com/github/DSNortsev/CSE-694-Case-Studies-in-Deep-Learning/blob/master/HW2/HW2.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a> ``` import seaborn as sns import pandas as pd import matplotlib.pyplot as plt from ...
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``` import numpy as np import xarray as xr import math import matplotlib.pyplot as plt import pandas as pd import seaborn as sns import os import f90nml from salishsea_tools import metric_tools_5x5 as met %matplotlib inline plt.rcParams['image.cmap'] = 'jet' plt.rc('xtick', labelsize=20) plt.rc('ytick', labelsize=20)...
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# Plagiarism Detection, Feature Engineering In this project, you will be tasked with building a plagiarism detector that examines an answer text file and performs binary classification; labeling that file as either plagiarized or not, depending on how similar that text file is to a provided, source text. Your first ...
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# **Optimización - Actividad 3** ![researchgate-logo.png](https://www.uninorte.edu.co/Uninorte/images/topbar_un/headerlogo_un.png) * Estudiante: Alejandro Jesús Manotas Marmolejo * Código: 200108289 # **Pregunta 1.** Considere $N$ funciones convexas $f_i(x):\Re\Rightarrow \Re$, para $1 \le i \le N$, demuestre ...
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... ***CURRENTLY UNDER DEVELOPMENT*** ... ## Obtain synthetic waves and water level timeseries under a climate change scenario (future AWTs occurrence probability) inputs required: * Historical DWTs (for plotting) * Historical wave families (for plotting) * Synthetic DWTs climate change * Historical intrada...
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# Strings in Python ## What is a string? A "string" is a series of characters of arbitrary length. Strings are immutable - they cannot be changed once created. When you modify a string, you automatically make a copy and modify the copy. ``` s1 = 'Godzilla' print s1, s1.upper(), s1 ``` ## String literals A "literal...
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# Intel® Distribution for GDB* In this notebook, we will cover using the Intel® Distribution for GDB* to debug oneAPI applications on the GPU. ##### Sections - [Intel Distribution for GDB Overview](#Intel-Distribution-for-GDB-Overview) - [How does the Intel Distribution for GDB debug GPUs?](#How-does-Intel-Distributi...
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# RefAssig V0.0 this is my faster simple version of the PMI and Abstract gene count scoring system. Improvements: * rapid access * streamlined function calls * clean data output * xml abstract data parsing --- ## 1.0 Libraries and input The work flow looks like this: 1. read in a list of chemicals as a csv with a ...
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# Cyclical Systems: An Example of the Crank-Nicolson Method ## CH EN 2450 - Numerical Methods **Prof. Tony Saad (<a>www.tsaad.net</a>) <br/>Department of Chemical Engineering <br/>University of Utah** <hr/> ``` import numpy as np from numpy import * # %matplotlib notebook # %matplotlib nbagg %matplotlib inline %config...
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# Unsupervised neural computation - Practical Dependencies: - Python (>= 2.6 or >= 3.3) - NumPy (>= 1.6.1) - SciPy (>= 0.12) - SciKit Learn (>=0.18.1) Just as there are different ways in which we ourselves learn from our own surrounding environments, so it is with neural networks. In a broad sense, we may categorize ...
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# 2021-05-10 Daily Practice - [x] Practice - [ ] SQL - [x] Algorithms - [ ] Solve + Design - [ ] Learn - [ ] Write - [ ] Build --- ## Practice - [x] https://leetcode.com/problems/reverse-integer/ - [x] https://leetcode.com/problems/longest-common-prefix/ - [x] https://leetcode.com/problems/maximum-subarray/ -...
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<table class="ee-notebook-buttons" align="left"> <td><a target="_parent" href="https://github.com/giswqs/geemap/tree/master/tutorials/Image/06_convolutions.ipynb"><img width=32px src="https://www.tensorflow.org/images/GitHub-Mark-32px.png" /> View source on GitHub</a></td> <td><a target="_parent" href="https:...
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<h1 align="center">Theano</h1> ``` !pip install numpy matplotlib !pip install --upgrade https://github.com/Theano/Theano/archive/master.zip !pip install --upgrade https://github.com/Lasagne/Lasagne/archive/master.zip ``` ### Разминка ``` import theano import theano.tensor as T %pylab inline ``` #### будущий пар...
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查看当前GPU信息 ``` from tensorflow.python.client import device_lib device_lib.list_local_devices() !pip install bert-tensorflow import pandas as pd import tensorflow as tf import tensorflow_hub as hub import pickle import bert from bert import run_classifier from bert import optimization from bert import tokenization def ...
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# Anna KaRNNa In this notebook, I'll build a character-wise RNN trained on Anna Karenina, one of my all-time favorite books. It'll be able to generate new text based on the text from the book. This network is based off of Andrej Karpathy's [post on RNNs](http://karpathy.github.io/2015/05/21/rnn-effectiveness/) and [i...
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## Change sys.path to use my tensortrade instead of the one in env ``` import sys sys.path.append("/Users/jasonfiacco/Documents/Yale/Senior/thesis/deeptrader") print(sys.path) ``` ## Read PredictIt Data Instead ``` import ssl import pandas as pd ssl._create_default_https_context = ssl._create_unverified_context # O...
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## 1. Convert pdf to image ``` ## NOTE: install tesseract (https://github.com/UB-Mannheim/tesseract/wiki) and Poppler first # !pip install pytesseract # !pip install Pillow # !pip install pdf2image # import statements from PIL import Image from pdf2image import convert_from_path import sys import os import numpy as np...
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[Table of Contents](./table_of_contents.ipynb) # Smoothing ``` #format the book %matplotlib inline from __future__ import division, print_function from book_format import load_style load_style() ``` ## Introduction The performance of the Kalman filter is not optimal when you consider future data. For example, suppo...
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# 準備 ``` # バージョン指定時にコメントアウト #!pip install torch==1.7.0 #!pip install torchvision==0.8.1 import torch import torchvision # バージョンの確認 print(torch.__version__) print(torchvision.__version__) # Google ドライブにマウント from google.colab import drive drive.mount('/content/gdrive') %cd '/content/gdrive/MyDrive/Colab Notebooks/gan_...
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# Optimization and gradient descent method ``` from IPython.display import IFrame IFrame(src="https://cdnapisec.kaltura.com/p/2356971/sp/235697100/embedIframeJs/uiconf_id/41416911/partner_id/2356971?iframeembed=true&playerId=kaltura_player&entry_id=1_wota11ay&flashvars[streamerType]=auto&amp;flashvars[localizationCod...
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``` import numpy as np import pandas as pd import random df = pd.read_csv('/Users/josephbell/Downloads/iris.csv') df = df.drop("Id", axis = 1) df = df.rename(columns = {"Species" : "target"}) df.head() # train test split def train_test_split(df, target, test_size): # shuffles data random_df = df.sample(frac=1) ...
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# One-step error probability Write a computer program implementing asynchronous deterministic updates for a Hopfield network. Use Hebb's rule with $w_{ii}=0$. Generate and store p=[12,24,48,70,100,120] random patterns with N=120 bits. Each bit is either +1 or -1 with probability $\tfrac{1}{2}$. For each value of ppp...
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# Acquiring Data from open repositories A crucial step in the work of a computational biologist is not only to analyse data, but acquiring datasets to analyse as well as toy datasets to test out computational methods and algorithms. The internet is full of such open datasets. Sometimes you have to sign up and make a u...
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# View Campaign and Interactions In the first notebook `Personalize_BuildCampaign.ipynb` you successfully built and deployed a recommendation model using deep learning with Amazon Personalize. This notebook will expand on that and will walk you through adding the ability to react to real time behavior of users. If th...
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``` import os import math import torch from torch.autograd import Variable from torch.optim import Adam from torch import nn import torch.nn.functional as F from torchvision import transforms from torch.utils.data import DataLoader, random_split, Dataset from scipy.io import wavfile import scipy.signal import numpy as ...
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## Import the Libraries ``` import os import warnings warnings.filterwarnings('ignore') # importing packages import pandas as pd import re import numpy as np import seaborn as sns import matplotlib.pyplot as plt %matplotlib inline # sklearn packages from sklearn import metrics from sklearn.model_selection import t...
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## The next step in the gap analysis is to calculate the Turbine Ideal Energy (TIE) for the wind farm based on SCADA data ``` %load_ext autoreload %autoreload 2 ``` This notebook provides an overview and walk-through of the turbine ideal energy (TIE) method in OpenOA. The TIE metric is defined as the amount of electr...
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# Code Review #1 Purpose: To introduce the group to looking at code analytically Created By: Hawley Helmbrecht Creation Date: 10-12-21 # Introduction to Analyzing Code All snipets within this section are taken from the Hitchhiker's Guide to Python (https://docs.python-guide.org/writing/style/) ### Example 1: Exp...
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___ <img src='logo.png' /></a> ___ # Python Crash Course Exercises - Solutions ## Exercises Answer the questions or complete the tasks outlined in bold below, use the specific method described if applicable. ** What is 7 to the power of 4?** ``` 7**4 ``` ** Split this string:** s = "Hi there Sam!" **int...
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# TV Script Generation In this project, you'll generate your own [Seinfeld](https://en.wikipedia.org/wiki/Seinfeld) TV scripts using RNNs. You'll be using part of the [Seinfeld dataset](https://www.kaggle.com/thec03u5/seinfeld-chronicles#scripts.csv) of scripts from 9 seasons. The Neural Network you'll build will ge...
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**Recursion and Higher Order Functions** Today we're tackling recursion, and touching on higher-order functions in Python. A **recursive** function is one that calls itself. A classic example: the Fibonacci sequence. The Fibonacci sequence was originally described to model population growth, and is self-refer...
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# Introduction to `pandas` ``` import numpy as np import pandas as pd ``` ## Series and Data Frames ### Series objects A `Series` is like a vector. All elements must have the same type or are nulls. ``` s = pd.Series([1,1,2,3] + [None]) s ``` ### Size ``` s.size ``` ### Unique Counts ``` s.value_counts() ``` ...
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``` import os, gc, sys import pygrib import regionmask import cartopy import cartopy.crs as ccrs import numpy as np import pandas as pd import xarray as xr import geopandas as gpd import multiprocessing as mp import matplotlib.pyplot as plt from glob import glob from functools import partial from matplotlib import gr...
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``` import numpy as np import matplotlib.pyplot as plt import matplotlib import os, sys import argparse import torch from Code.Utils import from_pickle from Code.models import cartpole from Code.integrate_models import implicit_integration_DEL, integrate_ODE from Code.symo import SyMo_RT from Code.NN import LODE_RT, N...
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# SLU13: Bias-Variance trade-off & Model Selection -- Examples --- <a id='top'></a> ### 1. Model evaluation * a. [Train-test split](#traintest) * b. [Train-val-test split](#val) * c. [Cross validation](#crossval) ### 2. [Learning curves](#learningcurves) # 1. Model evaluation ``` import matplotlib.pyplot as plt ...
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``` import matplotlib.pyplot as plt import numpy as np import scipy.io as scio import linearRegCostFunction as lrcf import trainLinearReg as tlr import learningCurve as lc import polyFeatures as pf import featureNormalize as fn import plotFit as plotft import validationCurve as vc plt.ion() np.set_printoptions(formatte...
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``` 100+ Python challenging programming exercises 1. Level description Level Description Level 1 Beginner means someone who has just gone through an introductory Python course. He can solve some problems with 1 or 2 Python classes or functions. Normally, the answers could directly be found in the textbooks. Level 2 In...
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# Phi_K advanced tutorial This notebook guides you through the more advanced functionality of the phik package. This notebook will not cover all the underlying theory, but will just attempt to give an overview of all the options that are available. For a theoretical description the user is referred to our paper. The ...
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## Support Vector Clustering visualized To get started, please click on the cell with the code below and hit `Shift + Enter` This may take a while. Support Vector Clustering(SVC) is a variation of Support Vector Machine (SVM). SVC is a way of determining a boudary point between different labels. It utilizes a kern...
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``` import pandas as pd import numpy as np import matplotlib.pyplot as plt import cartopy.crs as ccrs migration_patterns = pd.read_csv("./arctic_tern_migration.csv") #Data file, needs to be in working directory #Adds "Month" column to pd dataframe - "Date" is a string: "DD/MM/YYYY", takes characters 3:5=3,4 -> MM and ...
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``` import tabula import numpy as np import pandas as pd import os from pathlib import Path import PyPDF2 import re import requests import json import time # filenames = [ # os.path.expanduser('/home/parth/Documents/USICT/it_res.pdf'), # os.path.expanduser('/home/parth/Documents/USICT/cse_res...
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``` import requests from random import randint from time import sleep from bs4 import BeautifulSoup import pandas as pd # Maintenant nous avons un résumé au dessus de la fonction def get_url_micro_onde_tunisianet(): url_micro_onde_details = [] urls = [ "https://www.tunisianet.com.tn/564-four-electrique...
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# Description This notebook runs some pre-analyses using DBSCAN to explore the best set of parameters (`min_samples` and `eps`) to cluster `pca` data version. # Environment variables ``` from IPython.display import display import conf N_JOBS = conf.GENERAL["N_JOBS"] display(N_JOBS) %env MKL_NUM_THREADS=$N_JOBS %en...
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# Multi Investment Optimization In the following, we show how PyPSA can deal with multi-investment optimization, also known as multi-horizon optimization. Here, the total set of snapshots is divided into investment periods. For the model, this translates into multi-indexed snapshots with the first level being the in...
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## Rhetorical relations classification used in tree building: ESIM Prepare data and model-related scripts. Evaluate models. Make and evaluate ansembles for ESIM and BiMPM model / ESIM and feature-based model. Output: - ``models/relation_predictor_esim/*`` ``` %load_ext autoreload %autoreload 2 import os import gl...
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# Quantitative Value Strategy "Value investing" means investing in the stocks that are cheapest relative to common measures of business value (like earnings or assets). For this project, we're going to build an investing strategy that selects the 50 stocks with the best value metrics. From there, we will calculate rec...
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<a href="https://colab.research.google.com/github/ebagdasa/propaganda_as_a_service/blob/master/Spinning_Language_Models_for_Propaganda_As_A_Service.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a> # Experimenting with spinned models This is a Colab ...
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``` import matplotlib.pyplot as plt import numpy as np from mpl_toolkits.mplot3d import Axes3D import scipy as sp import sympy as sy sy.init_printing() np.set_printoptions(precision=3) np.set_printoptions(suppress=True) from IPython.core.interactiveshell import InteractiveShell InteractiveShell.ast_node_interactivity =...
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# Two Loop FDEM ``` from geoscilabs.base import widgetify import geoscilabs.em.InductionLoop as IND from ipywidgets import interact, FloatSlider, FloatText ``` ## Parameter Descriptions <img style="float: right; width: 500px" src="https://github.com/geoscixyz/geosci-labs/blob/master/images/em/InductionLoop.png?raw=t...
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# Neural Network **Learning Objectives:** * Use the `DNNRegressor` class in TensorFlow to predict median housing price The data is based on 1990 census data from California. This data is at the city block level, so these features reflect the total number of rooms in that block, or the total number of people who liv...
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``` %run -p Attack_Foolbox_ResNet20.py --checkpoint "/tanresults/experiments-horesnet/cifar10-nagpreresnet20-basicblock-eta-0.999-x-baolr-pgd-seed-0/model_best.pth.tar" -a "nagpreresnet" --block-name "basicblock" --feature_vec "x" --dataset "cifar10" --eta 0.999 --depth 20 --method ifgsm --epsilon 0.031 --gpu-id 1 %run...
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# Exploring Neural Audio Synthesis with NSynth ## Parag Mital There is a lot to explore with NSynth. This notebook explores just a taste of what's possible including how to encode and decode, timestretch, and interpolate sounds. Also check out the [blog post](https://magenta.tensorflow.org/nsynth-fastgen) for more ...
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### Multiple Regression <br> a - alpha<br> b - beta<br> i - ith user<br> e - error term<br> Equation - $y_{i}$ = $a_{}$ + $b_{1}$$x_{i1}$ + $b_{2}$$x_{i2}$ + ... + $b_{k}$$x_{ik}$ + $e_{i}$ beta = [alpha, beta_1, beta_2,..., beta_k]<br> x_i = [1, x_i1, x_i2,..., x_ik]<br> <br> ``` inputs = [[123,123,243],[234,455,5...
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## A Two-sample t-test to find differentially expressed miRNA's between normal and tumor tissues in Lung Adenocarcinoma ``` import os import pandas mirna_src_dir = os.getcwd() + "/assn-mirna-luad/data/processed/miRNA/" clinical_src_dir = os.getcwd() + "/assn-mirna-luad/data/processed/clinical/" mirna_tumor_df = pand...
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# Step 7: Serve data from OpenAgua into WEAP using WaMDaM #### By Adel M. Abdallah, Dec 2020 Execute the following cells by pressing `Shift-Enter`, or by pressing the play button <img style='display:inline;padding-bottom:15px' src='play-button.png'> on the toolbar above. ## Steps 1. Import python libraries 2. Impor...
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``` import argparse import time from collections import defaultdict from pathlib import Path import h5py import fastmri import fastmri.data.transforms as T import numpy as np import requests import torch from fastmri.data import SliceDataset from fastmri.models import Unet from tqdm import tqdm # loading multi coil kn...
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# Optimizing building HVAC with Amazon SageMaker RL ``` import sagemaker import boto3 from sagemaker.rl import RLEstimator from source.common.docker_utils import build_and_push_docker_image ``` ## Initialize Amazon SageMaker ``` role = sagemaker.get_execution_role() sm_session = sagemaker.session.Session() # Sage...
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# Spleen 3D segmentation with MONAI This tutorial demonstrates how MONAI can be used in conjunction with the [PyTorch Lightning](https://github.com/PyTorchLightning/pytorch-lightning) framework. We demonstrate use of the following MONAI features: 1. Transforms for dictionary format data. 2. Loading Nifti images with ...
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# Westeros Tutorial Part 1 - Welcome to the MESSAGEix framework & Creating a baseline scenario ### *Integrated Assessment Modeling for the 21st Century* For information on how to install *MESSAGEix*, please refer to [Installation page](https://message.iiasa.ac.at/en/stable/getting_started.html) and for getting *MESS...
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## Set Up Today you will create partial dependence plots and practice building insights with data from the [Taxi Fare Prediction](https://www.kaggle.com/c/new-york-city-taxi-fare-prediction) competition. We have again provided code to do the basic loading, review and model-building. Run the cell below to set everythi...
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``` Question 1 Create a function that takes an integer and returns a list from 1 to the given number, where: 1. If the number can be divided evenly by 4, amplify it by 10 (i.e. return 10 times the number). 2. If the number cannot be divided evenly by 4, simply return the number. Examples amplify(4) ➞ [1, 2, 3, 40] amp...
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``` import numpy as np import pandas as pd from matplotlib import pyplot as plt from tqdm import tqdm as tqdm %matplotlib inline import torch import torchvision import torchvision.transforms as transforms import torch.nn as nn import torch.optim as optim import torch.nn.functional as F import random # from google.co...
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# Statistical analysis on NEMSIS ## BMI 6106 - Final Project #### Project by: Anwar Alsanea <br> Luz Gabriela Iorg <br> Jorge Rojas <br> ## Abstract <br> The National Emergency Medical Services Information System (NEMSIS) is a national database that contains Emergency Medical Services (EMS) data collected for the Un...
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``` from tensorflow.python.client import device_lib device_lib.list_local_devices() import time import copy import numpy as np import os import subprocess import sys import torch import torch.backends.cudnn as cudnn import torch.nn as nn import torch.optim as optim from matplotlib import pyplot as plt from torch.utils....
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``` import numpy as np import pandas as pd import matplotlib.pyplot as plt from matplotlib import style import matplotlib.ticker as ticker import seaborn as sns from sklearn.datasets import load_boston from sklearn.ensemble import RandomForestClassifier from sklearn.metrics import accuracy_score from sklearn.metrics im...
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# Binary classification from 2 features using K Nearest Neighbors (KNN) Classification using "raw" python or libraries. The binary classification is on a single boundary defined by a continuous function and added white noise ``` import numpy as np from numpy import random import matplotlib.pyplot as plt import matpl...
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``` %matplotlib inline ``` ===================================================================== Compute Phase Slope Index (PSI) in source space for a visual stimulus ===================================================================== This example demonstrates how the Phase Slope Index (PSI) [1]_ can be computed i...
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# 📝 Exercise M7.03 As with the classification metrics exercise, we will evaluate the regression metrics within a cross-validation framework to get familiar with the syntax. We will use the Ames house prices dataset. ``` import pandas as pd import numpy as np ames_housing = pd.read_csv("../datasets/house_prices.csv...
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# Flights data preparation ``` from pyspark.sql import SQLContext from pyspark.sql import DataFrame from pyspark.sql import Row from pyspark.sql.types import * import pandas as pd import StringIO import matplotlib.pyplot as plt hc = sc._jsc.hadoopConfiguration() hc.set("hive.execution.engine", "mr") ``` ## Function t...
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<a href="https://colab.research.google.com/github/harnalashok/hadoop/blob/main/hadoop_spark_install_on_Colab.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a> ``` # Last amended: 30th March, 2021 # Myfolder: github/hadoop # Objective: # i) ...
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# OBJECTF Predire $\rho$, $\sigma_a$ et $\sigma_c$ en fonction de $E_r$, $F_r$, et $T_r$ a droite du domaine en toute temps # PREPARATION ## Les imports ``` %reset -f import matplotlib.pyplot as plt import numpy as np import pandas as pd from ast import literal_eval as l_eval np.set_printoptions(precision = 3) ``` ...
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## Phase 3 - deployment #### This notebook will provide and overview how to deploy and predict the CPE in two ways - The model was build/export in the last notebook (Phase_2_Advanced_Analytics__predictions) <br> This notebook show another option to save/export the model using the H2O flow UI and complement the inform...
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# Comprehensive Example ``` # Enabling the `widget` backend. # This requires jupyter-matplotlib a.k.a. ipympl. # ipympl can be install via pip or conda. %matplotlib widget import matplotlib.pyplot as plt import numpy as np # Testing matplotlib interactions with a simple plot fig = plt.figure() plt.plot(np.sin(np.lins...
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<a href="https://colab.research.google.com/github/jdz014/DS-Unit-2-Applied-Modeling/blob/master/module2-wrangle-ml-datasets/LS_DS12_232_assignment.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a> Lambda School Data Science *Unit 2, Sprint 3, Module ...
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