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Add more details to Display Board	Extension DisplayBoard ====================== Installation ------------ This extension is included with the core software and only needs to be set up. Setting up ---------- Edit your config.php and add DisplayBoard as an extension.	Extension DisplayBoard ====================== Installation ------------ This extension is included with the core software and only needs to be set up. Setting up ---------- Edit your config.php and add DisplayBoard as an extension. Display Board Today Next Later ------------------------------ This shows a grid...
Update tutorial intro - this has been out of date since March 2019	Introduction ============ This guide will cover some common PyCC functions their basic use cases. The biggest structural difference between older versions of PyCC and v4.0.0 is that the client is divided into sub-clients which each handle a specific set of functionality. Specifically, an instance of ``CitrinationClie...	Introduction ============ This guide will cover some common PyCC functions their basic use cases. The biggest structural difference between older versions of PyCC and v4.0.0 and later is that the client is divided into sub-clients which each handle a specific set of functionality. Specifically, an instance of ``Citri...
Add multinomial example to doc TOC	.. Copyright (C) 2014 Jaakko Luttinen This file is licensed under the MIT License. See LICENSE for a text of the license. Examples ******** .. toctree:: :maxdepth: 1 regression gmm bmm hmm pca lssm lda	.. Copyright (C) 2014 Jaakko Luttinen This file is licensed under the MIT License. See LICENSE for a text of the license. Examples ******** .. toctree:: :maxdepth: 1 multinomial regression gmm bmm hmm pca lssm lda
Use newton title for install guide to replace mitaka	================================= OpenStack High Availability Guide ================================= Abstract ~~~~~~~~ This guide describes how to install and configure OpenStack for high availability. It supplements the OpenStack Installation Guides and assumes that you are familiar with the material in those guid...	================================= OpenStack High Availability Guide ================================= Abstract ~~~~~~~~ This guide describes how to install and configure OpenStack for high availability. It supplements the Installation Tutorials and Guides and assumes that you are familiar with the material in those ...
Document that we want AES-GCM	Welcome to ``cryptography`` =========================== .. warning:: ``cryptography`` is very young, and very incomplete. ``cryptography`` is a Python library which exposes cryptographic primitives and recipes. Why a new crypto library for Python? ------------------------------------ We wanted to address a few...	Welcome to ``cryptography`` =========================== .. warning:: ``cryptography`` is very young, and very incomplete. ``cryptography`` is a Python library which exposes cryptographic primitives and recipes. Why a new crypto library for Python? ------------------------------------ We wanted to address a few...
Add a note about the library status in the docs.	.. title:: Main Page Welcome To retdec-python's Documentation! ========================================= `retdec-python <https://github.com/s3rvac/retdec-python>`_ is a Python library and tools providing easy access to the `retdec.com <https://retdec.com>`_ decompilation service through their public `REST API <https:...	.. title:: Main Page Welcome To retdec-python's Documentation! ========================================= `retdec-python <https://github.com/s3rvac/retdec-python>`_ is a Python library and tools providing easy access to the `retdec.com <https://retdec.com>`_ decompilation service through their public `REST API <https:...
Add link to gh-pages site	Installation ============ On Debian based systems node.js and the node package manger can be installed with:: apt-get install nodejs npm Afterwards the required node.js modules can be installed via:: npm install Currently two modules are required: * http-server - for serving the tutorial * bower -...	Installation ============ On Debian based systems node.js and the node package manger can be installed with:: apt-get install nodejs npm Afterwards the required node.js modules can be installed via:: npm install Currently two modules are required: * http-server - for serving the tutorial * bower -...
Put the links at the end of the document	================== Admin-tools Zinnia ================== Admin-tools-zinnia is package providing new dashboard modules related to your `Zinnia`_ application for `django-admin-tools`_. .. _Zinnia: http://django-blog-zinnia.com/ .. _django-admin-tools: http://pypi.python.org/pypi/django-admin-tools/ Installation =====...	================== Admin-tools Zinnia ================== Admin-tools-zinnia is package providing new dashboard modules related to your `Zinnia`_ application for `django-admin-tools`_. Installation ============ * Install the package on your system: :: $ pip install django-admin-tools $ pip install admin-tools-zi...
Add the max-line-length to the usage help	==== Doc8 ==== Doc8 is a opinionated style checker for sphinx (or other) `rst`_ documentation. QuickStart ========== :: pip install doc8 To run doc8 just invoke it against any doc directory:: $ doc8 coolproject/docs Usage ===== :: $ ./doc8 -h usage: doc8 [-h] [--config path] [--allow-long-ti...	==== Doc8 ==== Doc8 is a opinionated style checker for sphinx (or other) `rst`_ documentation. QuickStart ========== :: pip install doc8 To run doc8 just invoke it against any doc directory:: $ doc8 coolproject/docs Usage ===== :: $ ./doc8 -h usage: doc8 [-h] [--config path] [--allow-long-ti...
Add build and coverage status	Ravel ===== Ravel is a tool for building Quality-Based Narratives (QBNs), as `pioneered`_ by Failbetter Games, with a syntax inspired by Inkle Studios' `Ink`_ format and YAML. The goals of Ravel are manifold: - Provide a flexible engine for authoring, testing, and running QBNs. - Provide a simple, text-based authori...	Ravel ===== [![Build Status](https://travis-ci.org/eykd/ravel.svg?branch=master)](https://travis-ci.org/eykd/ravel) [![Coverage Status](https://coveralls.io/repos/github/eykd/ravel/badge.svg?branch=master)](https://coveralls.io/github/eykd/ravel?branch=master) Ravel is a tool for building Quality-Based Narratives (Q...
Fix formatting of contributor page	If you would like to contribute to the development of OpenStack, you must follow the steps in this page: http://docs.openstack.org/infra/manual/developers.html Once those steps have been completed, changes to OpenStack should be submitted for review via the Gerrit tool, following the workflow documented at: ht...	If you would like to contribute to the development of OpenStack, you must follow the steps in this page: http://docs.openstack.org/infra/manual/developers.html Once those steps have been completed, changes to OpenStack should be submitted for review via the Gerrit tool, following the workflow documented at: http://doc...
Add notice about subprotocol name and IANA registration	Swindon-lattice Protocol ======================== The protocol is higher level-protocol on top of websockets that allows routing messages between backends, push from any backend to any user, publish-subscribe and few other useful things. The protocol is designed to cover large number of cases including different appl...	Swindon-lattice Protocol ======================== The protocol is higher level-protocol on top of websockets that allows routing messages between backends, push from any backend to any user, publish-subscribe and few other useful things. The protocol is designed to cover large number of cases including different appl...
Update the docs to hint database timeouts	Plugin configuration options ============================ This plugin can be configured via your ``config/app.php``. It works similar to how all other CakePHP engine-based libraries work (Cache, Email, Log), and as such you can have multiple backends under different names. Here is an example config stanza: .. code:: ...	Plugin configuration options ============================ This plugin can be configured via your ``config/app.php``. It works similar to how all other CakePHP engine-based libraries work (Cache, Email, Log), and as such you can have multiple backends under different names. Here is an example config stanza: .. code:: ...
Add a link to the repository	Fortran 90 ========== External links: * `Fortran Best Practices <https://github.com/qsnake/qsnake/wiki/Fortran-best-practices>`_ Contents: .. toctree:: :maxdepth: 2 src/rosetta.rst src/gotchas.rst	Fortran 90 ========== External links: * `Fortran Best Practices <https://github.com/qsnake/qsnake/wiki/Fortran-best-practices>`_ Contents: .. toctree:: :maxdepth: 2 src/rosetta.rst src/gotchas.rst This web is opensource. If you have ideas for improvement, please send a pull request against the reposit...
Update link for NCI Cloud Resources	********************* About the TARGET Data ********************* The ISB-CGC currently hosts over 70 terabytes of TARGET_ data in Google Cloud Storage (GCS_) and in BigQuery_. .. _TARGET: https://ocg.cancer.gov/programs/target .. _GCS: https://cloud.google.com/storage/ .. _BigQuery: https://cloud.google.com/bi...	********************* About the TARGET Data ********************* The ISB-CGC currently hosts over 70 terabytes of TARGET_ data in Google Cloud Storage (GCS_) and in BigQuery_. .. _TARGET: https://ocg.cancer.gov/programs/target .. _GCS: https://cloud.google.com/storage/ .. _BigQuery: https://cloud.google.com/bi...
Add link to GitHub repo; remove unused links	Spaceland: access shapefiles in Python ====================================== Spaceland is a modern Python library for fast, Pythonic access to `ESRI shapefiles`_. Or, at least, that's what it will be. While Spaceland is in active development it's still early days and the library isn't yet feature-complete. What it...	Spaceland: access shapefiles in Python ====================================== Spaceland is a modern Python library for fast, Pythonic access to `ESRI shapefiles`_. Or, at least, that's what it will be. While Spaceland is in active development it's still early days and the library isn't yet feature-complete. What it...
Fix articles example in the documentation	The Stencil template language ============================= Stencil is a simple and powerful template language for Swift. It provides a syntax similar to Django and Mustache. If you're familiar with these, you will feel right at home with Stencil. .. code-block:: html+django There are {{ articles.count }} articl...	The Stencil template language ============================= Stencil is a simple and powerful template language for Swift. It provides a syntax similar to Django and Mustache. If you're familiar with these, you will feel right at home with Stencil. .. code-block:: html+django There are {{ articles.count }} articl...
Add note that this SDK is a 3rd party package	.. title:: Firebase PHP SDK ############################## Firebase PHP SDK Documentation ############################## This SDK makes it easy to interact with `Google Firebase <https://firebase.google.com>`_ applications. .. code-block:: php $firebase = Firebase::fromServiceAccount(__DIR__.'/google-service-ac...	.. title:: Firebase PHP SDK ############################## Firebase PHP SDK Documentation ############################## This SDK makes it easy to interact with `Google Firebase <https://firebase.google.com>`_ applications. .. note:: This is a 3rd party SDK and not maintained or supported by Firebase or Google. ...
Fix it for real this time.	.. :changelog: Release History =============== Unreleased (2019-07-xx) ----------------------- Added +++++ - `apt_install.sh` in utils/ that lists Ubuntu/apt package requirements. - `load_modules.sh` in utils/ that sets up Raijin environment. Fixed +++++ - Errors being caused by newer version of networkx. Nx 2.3 now ...	.. :changelog: Release History =============== Unreleased (2019-07-xx) ----------------------- Added +++++ - `apt_install.sh` in utils/ that lists Ubuntu/apt package requirements. - `load_modules.sh` in utils/ that sets up Raijin environment. Fixed +++++ - Errors being caused by newer version of networkx. Nx 2.3 now ...
Update the "Getting started" documentation to reflect getting the program from PyPI.	.. _install: Getting started =============== The source code for ``RnaChipIntegrator`` can be obtained from https://github.com/fls-bioinformatics-core/RnaChipIntegrator/releases It's recommended to download either a ``tar.gz`` or ``zip`` archive, unpack and then install using ``pip``, for example by running:: p...	.. _install: Getting started =============== The easiest way to get the latest version of ``RnaChipIntegrator`` is to use Python's ``pip`` utility to install the latest version of the program directly from the `Python Package Index (PyPI) <https://pypi.python.org/pypi/>`_, by doing:: pip install RnaChipIntegrato...
Hide the license rst files, as they are linked directly.	.. :author: Cask Data, Inc. :copyright: Copyright © 2014 Cask Data, Inc. ================================================= CDAP Reference: APIs, Licenses, and Dependencies ================================================= .. toctree:: :maxdepth: 3 Introduction <index> HTTP RESTful API <http-restful-api...	.. :author: Cask Data, Inc. :copyright: Copyright © 2014 Cask Data, Inc. ================================================= CDAP Reference: APIs, Licenses, and Dependencies ================================================= .. toctree:: :maxdepth: 3 Introduction <index> HTTP RESTful API <http-restful-api...
Update readme to point to stable build	========================= The ``lino_book`` package ========================= .. image:: https://readthedocs.org/projects/lino/badge/?version=latest :target: http://lino.readthedocs.io/en/latest/?badge=latest .. image:: https://coveralls.io/repos/github/lino-framework/book/badge.svg?branch=master :target: ht...	========================= The ``lino_book`` package ========================= .. image:: https://readthedocs.org/projects/lino/badge/?version=latest :target: http://lino.readthedocs.io/en/latest/?badge=latest .. image:: https://coveralls.io/repos/github/lino-framework/book/badge.svg?branch=master :target: ht...
Put missing doc in TOC	.. _developer_guide: ========================= IPython developer's guide ========================= This are two categories of developer focused documentation: 1. Documentation for developers of IPython itself. 2. Documentation for developers of third party tools and libraries that use IPython. This part of our...	.. _developer_guide: ========================= IPython developer's guide ========================= This are two categories of developer focused documentation: 1. Documentation for developers of IPython itself. 2. Documentation for developers of third party tools and libraries that use IPython. This part of our...
Convert code snipped into a doctest	========================= Using Pybtex as a library ========================= Using the BibTeX parser ======================= .. sourcecode:: pycon >>> from pybtex.database.input import bibtex >>> parser = bibtex.Parser() >>> bib_data = parser.parse_file('examples/foo.bib') >>> bib_data.entries.keys...	========================= Using Pybtex as a library ========================= Using the BibTeX parser ======================= .. doctest:: >>> from pybtex.database.input import bibtex >>> parser = bibtex.Parser() >>> bib_data = parser.parse_file('../examples/tugboat/tugboat.bib') >>> print bib_data....
Use two-level table of contents	Web Apollo 2 ------------------------ View `On Github <https://github.com/GMOD/Apollo/blob/master/docs/index.md>`__ Web Apollo 2 - An instantaneous, collaborative, genome annotation editor. The application's technology stack includes a Grails-based Java web application with flexible database backends and a Javascrip...	Web Apollo 2 ------------------------ View `On Github <https://github.com/GMOD/Apollo/blob/master/docs/index.md>`__ Web Apollo 2 - An instantaneous, collaborative, genome annotation editor. The application's technology stack includes a Grails-based Java web application with flexible database backends and a Javascrip...
Add other subpackages to API reference	API Reference ============= .. automodule:: pyeagle :members: :undoc-members:	API Reference ============= .. automodule:: pyeagle :members: :undoc-members: .. automodule:: pyeagle.types :members: :undoc-members: .. automodule:: pyeagle.geometry :members: :undoc-members:
Undo translation of 'in english'.	wallabag Dokumentation ====================== .. image:: ../img/wallabag.png :alt: wallabag Logo :align: center wallabag ist eine Read-it-later Applikation: es speichert Websites, indem es nur den Inhalt behält. Elemente wie Navigation oder Werbung werden gelöscht. Die Hauptdokumentation für diese Applikat...	wallabag Dokumentation ====================== .. image:: ../img/wallabag.png :alt: wallabag Logo :align: center wallabag ist eine Read-it-later Applikation: es speichert Websites, indem es nur den Inhalt behält. Elemente wie Navigation oder Werbung werden gelöscht. Die Hauptdokumentation für diese Applikat...
Remove a level of <ul> tags in user guide	.. title:: User guide: contents .. _user_guide: ========== User Guide ========== Getting started --------------- The following guides cover how to get started with a pmdarima distribution. The easiest solution is simply installing from PyPi, but if you'd like to contribute you'll need to be able to build from source...	.. title:: User guide: contents .. _user_guide: ========== User Guide ========== The following guides cover how to get started with a pmdarima distribution. The easiest solution is simply installing from PyPi, but if you'd like to contribute you'll need to be able to build from source. .. raw:: html <br/> .. t...
Use shields.io instead of pypip.in.	SQLAlchemy-Utils ================ \|Build Status\| \|Version Status\| \|Downloads\| Various utility functions, new data types and helpers for SQLAlchemy. Resources --------- - `Documentation <http://sqlalchemy-utils.readthedocs.org/>`_ - `Issue Tracker <http://github.com/kvesteri/sqlalchemy-utils/issues>`_ - `Code <htt...	SQLAlchemy-Utils ================ \|Build Status\| \|Version Status\| \|Downloads\| Various utility functions, new data types and helpers for SQLAlchemy. Resources --------- - `Documentation <http://sqlalchemy-utils.readthedocs.org/>`_ - `Issue Tracker <http://github.com/kvesteri/sqlalchemy-utils/issues>`_ - `Code <htt...
Add binascii.hexlify to retrieve the Sigfox ID and PAC.	Registering the SiPy with Sigfox -------------------------------- To ensure your device has been provisioned with Device ID and PAC number, please update to the latest :ref:`firmware <firmware_upgrades>`. In order to send a Sigfox message, you will need to register your SiPy with the Sigfox Backend. Navigate ...	Registering the SiPy with Sigfox -------------------------------- To ensure your device has been provisioned with Device ID and PAC number, please update to the latest :ref:`firmware <firmware_upgrades>`. In order to send a Sigfox message, you will need to register your SiPy with the Sigfox Backend. Navigate ...
Fix URL to the previous changelog wiki	^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Changelog for package turtlebot_teleop ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2.1.x - hydro, unstable ======================= Forthcoming ----------- 2.1.1 (2013-08-09) ------------------ * Add missing include_directories to the teleop build. * Add absolute namespaces * Rename ...	^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Changelog for package turtlebot_teleop ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2.1.x - hydro, unstable ======================= Forthcoming ----------- 2.1.1 (2013-08-09) ------------------ * Add missing include_directories to the teleop build. * Add absolute namespaces * Rename ...
Remove Indices and Tables section	SymbiFlow Architecture Definitions ================================== *Warning: This project is a work in progress and many items may be broken.* This project contains documentation of various FPGA architectures, it is currently concentrating on; * Lattice iCE40 * Artix 7 The aim is to include useful documentat...	SymbiFlow Architecture Definitions ================================== *Warning: This project is a work in progress and many items may be broken.* This project contains documentation of various FPGA architectures, it is currently concentrating on; * Lattice iCE40 * Artix 7 The aim is to include useful documentat...
Add documentation of inner modules	Welcome to pip-run documentation! ============================= .. toctree:: :maxdepth: 1 history .. automodule:: pip_run :members: :undoc-members: :show-inheritance: Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search`	Welcome to pip-run documentation! ============================= .. toctree:: :maxdepth: 1 history .. automodule:: pip_run :members: :undoc-members: :show-inheritance: .. automodule:: pip_run.commands :members: :undoc-members: :show-inheritance: .. automodule:: pip_run.deps :membe...
Fix spurious = in dib-python readme	=========== dib=-python =========== Adds a symlink to /usr/local/bin/dib-python which points at either a python2 or python3 executable. This is useful for creating #! lines for scripts that are compatible with both python2 and python3. This does not install a python if one does not exist, and instead fails.	========== dib-python ========== Adds a symlink to /usr/local/bin/dib-python which points at either a python2 or python3 executable. This is useful for creating #! lines for scripts that are compatible with both python2 and python3. This does not install a python if one does not exist, and instead fails.
Fix example in documentation, NFC	.. title:: clang-tidy - modernize-replace-random-shuffle modernize-replace-random-shuffle ================================ This check will find occurrences of ``std::random_shuffle`` and replace it with ``std::shuffle``. In C++17 ``std::random_shuffle`` will no longer be available and thus we need to replace it. Bel...	.. title:: clang-tidy - modernize-replace-random-shuffle modernize-replace-random-shuffle ================================ This check will find occurrences of ``std::random_shuffle`` and replace it with ``std::shuffle``. In C++17 ``std::random_shuffle`` will no longer be available and thus we need to replace it. Bel...
Add version and license images.	.. image:: http://vmlaker.github.io/coils/logo.png :alt: Coils Logo :target: http://vmlaker.github.io/coils .. image:: https://api.travis-ci.org/vmlaker/coils.png?branch=master :alt: Build Result Image :target: https://travis-ci.org/vmlaker/coils Coils ===== Read `the docs <http://vmlaker.github.io/coils>`_....	.. image:: http://vmlaker.github.io/coils/logo.png :alt: Coils Logo :target: http://vmlaker.github.io/coils .. image:: https://img.shields.io/pypi/v/coils.svg :alt: Pypi version :target: https://pypi.python.org/pypi/coils .. image:: https://api.travis-ci.org/vmlaker/coils.png?branch=master :alt: Build Result ...
Add performance tips for modeling	.. note that if this is changed from the default approach of using an include (in index.rst) to a separate performance page, the header needs to be changed from === to ***, the filename extension needs to be changed from .inc.rst to .rst, and a link needs to be added in the subpackage toctree .. _astropy-mo...	.. note that if this is changed from the default approach of using an include (in index.rst) to a separate performance page, the header needs to be changed from === to ***, the filename extension needs to be changed from .inc.rst to .rst, and a link needs to be added in the subpackage toctree .. _astropy-mo...
Add note about more warnings in Stratego editor	============= Spoofax 2.5.0 ============= This is a stub for the release notes of Spoofax 2.5.0. See the corresponding :ref:`migration guide <2.5.0-migration-guide>` for migrating from Spoofax 2.4.0 to Spoofax 2.5.0. Changes -------	============= Spoofax 2.5.0 ============= This is a stub for the release notes of Spoofax 2.5.0. See the corresponding :ref:`migration guide <2.5.0-migration-guide>` for migrating from Spoofax 2.4.0 to Spoofax 2.5.0. Changes ------- Stratego ^^^^^^^^ - Stratego editor now gives warnings when using `left`, `right` ...
Add DART client to docs	Literature clients (:py:mod:`indra.literature`) =============================================== .. automodule:: indra.literature :members: Pubmed client (:py:mod:`indra.literature.pubmed_client`) -------------------------------------------------------- .. automodule:: indra.literature.pubmed_client :members:...	Literature clients (:py:mod:`indra.literature`) =============================================== .. automodule:: indra.literature :members: Pubmed client (:py:mod:`indra.literature.pubmed_client`) -------------------------------------------------------- .. automodule:: indra.literature.pubmed_client :members:...
Remove obsolete docs on pep8 sanity test.	:orphan: .. _testing_pep8: *** PEP 8 *** .. contents:: Topics `PEP 8`_ style guidelines are enforced by `pycodestyle`_ on all python files in the repository by default. Current Rule Set ================ By default all files are tested using the current rule set. All `PEP 8`_ tests are executed, except those l...	:orphan: .. _testing_pep8: *** PEP 8 *** .. contents:: Topics `PEP 8`_ style guidelines are enforced by `pycodestyle`_ on all python files in the repository by default. Running Locally =============== The `PEP 8`_ check can be run locally with:: ansible-test sanity --test pep8 [file-or-directory-path-to...