Instruction
stringlengths
362
7.83k
output_code
stringlengths
1
945
Given snippet: <|code_start|> @todo: Add stencil components to L{texture_formats}. @author: Stephan Wenger @date: 2012-02-29 """ format_to_length = { #_gl.GL_COLOR_INDEX: 1, _gl.GL_STENCIL_INDEX: 1, _gl.GL_DEPTH_COMPONENT: 1, _gl.GL_RED: 1, _gl.GL_GREEN: 1, _gl.GL_BLUE...
((uint8, 1), _gl.GL_R8UI, (_gl.GL_UNSIGNED_BYTE, _gl.GL_RED_INTEGER )),
Given the code snippet: <|code_start|> @author: Stephan Wenger @date: 2012-02-29 """ format_to_length = { #_gl.GL_COLOR_INDEX: 1, _gl.GL_STENCIL_INDEX: 1, _gl.GL_DEPTH_COMPONENT: 1, _gl.GL_RED: 1, _gl.GL_GREEN: 1, _gl.GL_BLUE: 1, _gl.GL_ALPHA: 1, _gl.GL_...
((uint16, 1), _gl.GL_R16UI, (_gl.GL_UNSIGNED_SHORT, _gl.GL_RED_INTEGER )),
Using the snippet: <|code_start|>@date: 2012-02-29 """ format_to_length = { #_gl.GL_COLOR_INDEX: 1, _gl.GL_STENCIL_INDEX: 1, _gl.GL_DEPTH_COMPONENT: 1, _gl.GL_RED: 1, _gl.GL_GREEN: 1, _gl.GL_BLUE: 1, _gl.GL_ALPHA: 1, _gl.GL_RGB: 3, _gl.GL_BGR: 3,...
((uint32, 1), _gl.GL_R32UI, (_gl.GL_UNSIGNED_INT, _gl.GL_RED_INTEGER )),
Predict the next line for this snippet: <|code_start|>@todo: Add stencil components to L{texture_formats}. @author: Stephan Wenger @date: 2012-02-29 """ format_to_length = { #_gl.GL_COLOR_INDEX: 1, _gl.GL_STENCIL_INDEX: 1, _gl.GL_DEPTH_COMPONENT: 1, _gl.GL_RED: 1, _gl.GL_GREEN...
((int8, 1), _gl.GL_R8I, (_gl.GL_BYTE, _gl.GL_RED_INTEGER )),
Given snippet: <|code_start|>"""Constants and enums. @todo: Add stencil components to L{texture_formats}. @author: Stephan Wenger @date: 2012-02-29 """ format_to_length = { #_gl.GL_COLOR_INDEX: 1, _gl.GL_STENCIL_INDEX: 1, _gl.GL_DEPTH_COMPONENT: 1, _gl.GL_RED: 1, _gl.GL_GREEN...
((int16, 1), _gl.GL_DEPTH_COMPONENT16, (_gl.GL_SHORT, _gl.GL_DEPTH_COMPONENT)),
Given the following code snippet before the placeholder: <|code_start|>"""Constants and enums. @todo: Add stencil components to L{texture_formats}. @author: Stephan Wenger @date: 2012-02-29 """ format_to_length = { #_gl.GL_COLOR_INDEX: 1, _gl.GL_STENCIL_INDEX: 1, _gl.GL_DEPTH_COMPONENT: 1, ...
((int32, 1), _gl.GL_DEPTH_COMPONENT24, (_gl.GL_INT, _gl.GL_DEPTH_COMPONENT)),
Here is a snippet: <|code_start|>"""Constants and enums. @todo: Add stencil components to L{texture_formats}. @author: Stephan Wenger @date: 2012-02-29 """ format_to_length = { #_gl.GL_COLOR_INDEX: 1, _gl.GL_STENCIL_INDEX: 1, _gl.GL_DEPTH_COMPONENT: 1, _gl.GL_RED: 1, _gl.GL_G...
((float32, 1), _gl.GL_DEPTH_COMPONENT32F, (_gl.GL_FLOAT, _gl.GL_DEPTH_COMPONENT)),
Based on the snippet: <|code_start|> ((int32, 2), _gl.GL_RG32I, (_gl.GL_INT, _gl.GL_RG_INTEGER )), ((float32, 2), _gl.GL_RG32F, (_gl.GL_FLOAT, _gl.GL_RG )), ((uint8, 3), _gl.GL_RGB8UI, (_gl.GL_UNSIGNED_BYTE, _gl.GL_RGB_INTEGER )), ((int8, 3), ...
texture_compare_funcs = Enum(
Given snippet: <|code_start|> self._setter = setter self._set_args = set_args self._dtype = dtype if dtype else int32 self._shape = None if shape is None else tuple(shape) if hasattr(shape, "__iter__") and not isinstance(shape, str) else (shape,) self._enum = enum self._na...
_value = coerce_array(_value, dtype=self._dtype)
Continue the code snippet: <|code_start|>"""Base classes for descriptors and descriptor owners. @bug: L{Proxy} is currently unaware of its context. @author: Stephan Wenger @date: 2012-02-29 """ class Proxy(object): def __init__(self, getter=None, get_args=(), setter=None, set_args=(), dtype=None, shape=(), enum...
self._dtype = dtype if dtype else int32
Given the following code snippet before the placeholder: <|code_start|> return getattr(self._obj, self._name) def __set__(self, obj, value): setattr(self._obj, self._name, value) def __delete__(self, obj): delattr(self._obj, self._name) class ItemProxy(object): def __init__(self, o...
setattr(parent, key, with_obj(parent, value))
Given the following code snippet before the placeholder: <|code_start|>"""Datatypes for use with L{ShaderProgram}s. @author: Stephan Wenger @date: 2012-02-29 """ class ShaderDatatype(object): _gltype_db = {} _db = {} def __init__(self, name, _gltype, dtype=int32, shape=1, texture=False, atomic=True): ...
Datatype._gltype_db[self._gltype] = self
Given the following code snippet before the placeholder: <|code_start|>"""Datatypes for use with L{ShaderProgram}s. @author: Stephan Wenger @date: 2012-02-29 """ class ShaderDatatype(object): _gltype_db = {} _db = {} def __init__(self, name, _gltype, dtype=int32, shape=1, texture=False, atomic=True): ...
if self._dtype == int32 or self._dtype == bool8:
Given snippet: <|code_start|>"""Datatypes for use with L{ShaderProgram}s. @author: Stephan Wenger @date: 2012-02-29 """ class ShaderDatatype(object): _gltype_db = {} _db = {} <|code_end|> , continue by predicting the next line. Consider current file imports: import numpy as _np import glitter.raw as _gl f...
def __init__(self, name, _gltype, dtype=int32, shape=1, texture=False, atomic=True):
Predict the next line after this snippet: <|code_start|> @author: Stephan Wenger @date: 2012-02-29 """ class ShaderDatatype(object): _gltype_db = {} _db = {} def __init__(self, name, _gltype, dtype=int32, shape=1, texture=False, atomic=True): self._name = name self._gltype = _gltype ...
elif self._dtype == uint32:
Predict the next line after this snippet: <|code_start|>@date: 2012-02-29 """ class ShaderDatatype(object): _gltype_db = {} _db = {} def __init__(self, name, _gltype, dtype=int32, shape=1, texture=False, atomic=True): self._name = name self._gltype = _gltype self._dtype = dtype ...
elif self._dtype == float32:
Continue the code snippet: <|code_start|> class ShaderDatatype(object): _gltype_db = {} _db = {} def __init__(self, name, _gltype, dtype=int32, shape=1, texture=False, atomic=True): self._name = name self._gltype = _gltype self._dtype = dtype self._shape = (shape,) if not ...
elif self._dtype == float64:
Given snippet: <|code_start|> fovy = 45.0 * np.pi / 180.0 aspect = self.width / float(self.height) znear = 0.001 zfar = 1000.0 focal = 1.0 / np.tan(fovy / 2.0) persp_mat = np.zeros((4, 4)) persp_mat[0, 0] = focal / aspect persp_mat[1, 1] = focal pe...
if get_shift_state():
Continue the code snippet: <|code_start|>''' Created on Jan 4, 2017 @author: lubo ''' def test_multiplier(model_fixture): <|code_end|> . Use current file imports: import numpy as np import pytest from scgv.views.sample import SamplesViewer and context (classes, functions, or code) from other files: # Path: scgv/...
sample = SamplesViewer(model_fixture)
Using the snippet: <|code_start|>''' Created on Dec 21, 2016 @author: lubo ''' # import pytest def test_data_model_make_01(example_data): <|code_end|> , determine the next line of code. You have imports: import numpy as np from scgv.models.model import DataModel # , gate_compare from scgv.models.featuremat_model i...
model = DataModel(example_data)
Using the snippet: <|code_start|>''' Created on Dec 21, 2016 @author: lubo ''' # import pytest def test_data_model_make_01(example_data): model = DataModel(example_data) assert model is not None model.make() sectors_legend = model.make_sectors_legend() print(sectors_legend) def test_make_featu...
featuremat_model = FeaturematModel(model)
Given the following code snippet before the placeholder: <|code_start|>''' Created on Dec 2, 2016 @author: lubo ''' @pytest.fixture def example_data(): return 'exampledata/example.archive.zip' @pytest.fixture def example_dir(): return 'exampledata/example.directory' @pytest.fixture def model_fixture(exam...
model = DataModel(example_data)
Based on the snippet: <|code_start|> QApplication.setOverrideCursor(Qt.ArrowCursor) print("UCSC Genome Broser position not found....") return QApplication.setOverrideCursor(Qt.ArrowCursor) chrom_end, pos_end = self.browse_position chrom_start, pos_start = se...
samples_viewer = SamplesViewer(self.model)
Based on the snippet: <|code_start|>''' Created on Jan 18, 2017 @author: lubo ''' def test_data_model_make_01(example_data): model = DataModel(example_data) assert model is not None model.make() <|code_end|> , predict the immediate next line with the help of imports: import numpy as np from scgv.model...
sector_model = SectorsDataModel(model)
Continue the code snippet: <|code_start|> print(model.column_labels[m - 1]) assert sector_model.sector[0] == 1 assert sector_model.column_labels[0] == model.column_labels[m] def test_sector_order_experiments(): elements = np.array([0, 1, 2, 3]) leaves = np.array([3, 1, 2, 0]) sectors = np.arra...
single_sector_model = SingleSectorDataModel(model, 1)
Next line prediction: <|code_start|>''' Created on Jan 18, 2017 @author: lubo ''' def test_data_model_make_01(example_data): <|code_end|> . Use current file imports: (import numpy as np from scgv.models.sector_model import SectorsDataModel, SingleSectorDataModel from scgv.models.model import DataModel) and contex...
model = DataModel(example_data)
Continue the code snippet: <|code_start|> ''' Change filepath = your data file from ncbi Change column_num = Column number of data file ''' filepath = r"" column_num = 0 if not DATABASE_URI.startswith('mysql+pymysql://'): DATABASE_URI = 'mysql+pymysql://'+DATABASE_URI.split('://')[1] <|code_end|> . Use current fi...
upload(DATABASE_URI, filepath, gene_commit, column_num, cache_size=100000, echo=True, log=True)
Given the code snippet: <|code_start|>''' ''' class TestFunctions(unittest.TestCase): # replace the function:multiply that we import # if not decorated,the function imported is used @mock.patch('test_sample.function_as_sample.multiply') def test_add_and_multiply(self,mock_multiply): x = 3 ...
addition, multiple = add_and_multiply(x, y)
Based on the snippet: <|code_start|> class PanoDocument(TableBase, PluginDocument): __tablename__ = 'pano' def __init__(self, owner, title='Untitled', text=''): super().__init__() self.owner = owner self.title = title self.text = text self.description = 'not support ...
class Pano(Plugin):
Given the following code snippet before the placeholder: <|code_start|> class PanoDocument(TableBase, PluginDocument): __tablename__ = 'pano' def __init__(self, owner, title='Untitled', text=''): super().__init__() self.owner = owner self.title = title self.text = text ...
text = Column(Text())
Here is a snippet: <|code_start|> class PanoDocument(TableBase, PluginDocument): __tablename__ = 'pano' def __init__(self, owner, title='Untitled', text=''): super().__init__() self.owner = owner self.title = title self.text = text self.description = 'not support des...
text = Column(Text())
Here is a snippet: <|code_start|> class PanoDocument(TableBase, PluginDocument): __tablename__ = 'pano' def __init__(self, owner, title='Untitled', text=''): super().__init__() self.owner = owner self.title = title self.text = text self.description = 'not support des...
created = Column(Integer())
Given the code snippet: <|code_start|> class PanoDocument(TableBase, PluginDocument): __tablename__ = 'pano' def __init__(self, owner, title='Untitled', text=''): super().__init__() self.owner = owner self.title = title self.text = text self.description = 'not suppor...
public = Column(Boolean())
Using the snippet: <|code_start|> class PanoDocument(TableBase, PluginDocument): __tablename__ = 'pano' def __init__(self, owner, title='Untitled', text=''): super().__init__() self.owner = owner self.title = title self.text = text self.description = 'not support des...
PanoDocument.__table__.create(engine)
Given snippet: <|code_start|> def list(self, **kwargs): docs = self.documents.list(self.user.id) return dict(ids=list(map(lambda x:x.id, docs))) def load(self, id, **kwargs): id = int(id) doc = self.documents.get(id) if not (doc and (doc.owner == self.user.id or doc.publ...
for i in session.query(PanoDocument).filter(PanoDocument.last_modified > time()-7*24*3600).all():
Continue the code snippet: <|code_start|> doc.comments = repr(comments) self.documents.update(doc) return {} def submit_praise(self, modify, event_id, **kwargs): modify = modify=='true' if type(modify) is str else bool(modify) id = int(event_id) doc = self.documents.g...
for res in session.query(Gene).filter(Gene.gene_id == s):
Predict the next line for this snippet: <|code_start|> class user_model(Plugin): def __init__(self): super().__init__() print('user_model plugin loaded') self.name = 'user_model' def process(self, request): if request['action'] == 'validate_login': print('Login: ',...
session.add(user)
Given the following code snippet before the placeholder: <|code_start|> class user_model(Plugin): def __init__(self): super().__init__() print('user_model plugin loaded') self.name = 'user_model' def process(self, request): if request['action'] == 'validate_login': ...
user = User.get_user_by_email(email)
Given the code snippet: <|code_start|>"""This is an example plugin for BioHub. It manages all text files, and print some debug messages.""" class TextFileDocument(TableBase, PluginDocument): __tablename__ = 'textfile' def __init__(self, owner, title='Untitled', text=''): super().__init__() ...
class TextFile(Plugin):
Predict the next line after this snippet: <|code_start|>"""This is an example plugin for BioHub. It manages all text files, and print some debug messages.""" class TextFileDocument(TableBase, PluginDocument): __tablename__ = 'textfile' def __init__(self, owner, title='Untitled', text=''): super()...
text = Column(Text())
Using the snippet: <|code_start|>"""This is an example plugin for BioHub. It manages all text files, and print some debug messages.""" class TextFileDocument(TableBase, PluginDocument): __tablename__ = 'textfile' def __init__(self, owner, title='Untitled', text=''): super().__init__() sel...
text = Column(Text())
Based on the snippet: <|code_start|>"""This is an example plugin for BioHub. It manages all text files, and print some debug messages.""" class TextFileDocument(TableBase, PluginDocument): __tablename__ = 'textfile' def __init__(self, owner, title='Untitled', text=''): super().__init__() ...
TextFileDocument.__table__.create(engine)
Given the code snippet: <|code_start|> SPFA_time = datetime.now() time_point["SPFA"] = SPFA_time - convert_time path_list = [] for j in Astar(s, t, k): # not founded if j == -1: break # overtime if j == 0: break path = [] for nod...
class Path_Finder_New(Plugin):
Predict the next line for this snippet: <|code_start|> home = Blueprint('home', __name__) @home.route('/') def index(): if current_user.is_authenticated: return redirect(url_for('static', filename='projects.html')) return redirect(url_for('static', filename='login.html')) @home.route('/validateLogin...
login_user(session.query(User).get(id))
Continue the code snippet: <|code_start|> home = Blueprint('home', __name__) @home.route('/') def index(): if current_user.is_authenticated: return redirect(url_for('static', filename='projects.html')) return redirect(url_for('static', filename='login.html')) @home.route('/validateLogin', methods=['...
login_user(session.query(User).get(id))
Predict the next line for this snippet: <|code_start|> class PluginDocument(object): """Abstract class for all plugins to make their own document type.""" def __init__(self): super().__init__() if self.__class__ is PluginDocument: raise NotImplementedError <|code_end|> with the ...
id = Column(Integer(), primary_key=True)
Based on the snippet: <|code_start|> class PluginDocument(object): """Abstract class for all plugins to make their own document type.""" def __init__(self): super().__init__() if self.__class__ is PluginDocument: raise NotImplementedError <|code_end|> , predict the immediate next...
id = Column(Integer(), primary_key=True)
Given snippet: <|code_start|> class PluginDocument(object): """Abstract class for all plugins to make their own document type.""" def __init__(self): super().__init__() if self.__class__ is PluginDocument: raise NotImplementedError id = Column(Integer(), primary_key=True) ...
title = Column(String(256))
Next line prediction: <|code_start|> class PluginDocument(object): """Abstract class for all plugins to make their own document type.""" def __init__(self): super().__init__() if self.__class__ is PluginDocument: raise NotImplementedError id = Column(Integer(), primary_key=Tr...
return Column(Integer(), ForeignKey('user.id'))
Using the snippet: <|code_start|> class PluginDocument(object): """Abstract class for all plugins to make their own document type.""" def __init__(self): super().__init__() if self.__class__ is PluginDocument: raise NotImplementedError id = Column(Integer(), primary_key=True)...
description = Column(Text())
Next line prediction: <|code_start|> works = Column(VARCHAR(10)) favorite = Column(INTEGER(4)) specified_u_list = Column(LONGTEXT) deep_u_list = Column(LONGTEXT) deep_count = Column(INTEGER(11)) ps_string = Column(LONGTEXT) scars = Column(VARCHAR(20)) default_scars = Column(VARCHAR(20)) ...
owner = Column(Integer, ForeignKey('user.user_id'))
Here is a snippet: <|code_start|> works = Column(VARCHAR(10)) favorite = Column(INTEGER(4)) specified_u_list = Column(LONGTEXT) deep_u_list = Column(LONGTEXT) deep_count = Column(INTEGER(11)) ps_string = Column(LONGTEXT) scars = Column(VARCHAR(20)) default_scars = Column(VARCHAR(20)) ...
owner = Column(Integer, ForeignKey('user.user_id'))
Given the code snippet: <|code_start|> class BiobrickUser(TableBase): __tablename__ = 'parts_by_user' part_id = Column(INTEGER(11), primary_key=True) <|code_end|> , generate the next line using the imports in this file: from database import TableBase, Column, ForeignKey, \ Integer, INTEGER, TINYINT, VARC...
ok = Column(TINYINT(1))
Given the following code snippet before the placeholder: <|code_start|> class BiobrickUser(TableBase): __tablename__ = 'parts_by_user' part_id = Column(INTEGER(11), primary_key=True) ok = Column(TINYINT(1)) <|code_end|> , predict the next line using imports from the current file: from database import Tab...
part_name = Column(VARCHAR(255))
Here is a snippet: <|code_start|> class BiobrickUser(TableBase): __tablename__ = 'parts_by_user' part_id = Column(INTEGER(11), primary_key=True) ok = Column(TINYINT(1)) part_name = Column(VARCHAR(255)) short_desc = Column(VARCHAR(100)) <|code_end|> . Write the next line using the current file impo...
description = Column(LONGTEXT)
Predict the next line after this snippet: <|code_start|> class BiobrickUser(TableBase): __tablename__ = 'parts_by_user' part_id = Column(INTEGER(11), primary_key=True) ok = Column(TINYINT(1)) part_name = Column(VARCHAR(255)) short_desc = Column(VARCHAR(100)) description = Column(LONGTEXT) ...
creation_date = Column(DATE)
Given the following code snippet before the placeholder: <|code_start|> class BiobrickUser(TableBase): __tablename__ = 'parts_by_user' part_id = Column(INTEGER(11), primary_key=True) ok = Column(TINYINT(1)) part_name = Column(VARCHAR(255)) short_desc = Column(VARCHAR(100)) description = Column...
m_datetime = Column(DATETIME)
Next line prediction: <|code_start|> short_desc = Column(VARCHAR(100)) description = Column(LONGTEXT) part_type = Column(VARCHAR(20)) author = Column(VARCHAR(200)) owning_group_id = Column(INTEGER(11)) status = Column(VARCHAR(20)) dominant = Column(TINYINT(1)) informational = Column(TINYI...
sources = Column(TEXT)
Continue the code snippet: <|code_start|> owning_group_id = Column(INTEGER(11)) status = Column(VARCHAR(20)) dominant = Column(TINYINT(1)) informational = Column(TINYINT(1)) discontinued = Column(INTEGER(11)) part_status = Column(VARCHAR(40)) sample_status = Column(VARCHAR(40)) p_status_c...
sequence_sha1 = Column(BINARY(20))
Continue the code snippet: <|code_start|> informational = Column(TINYINT(1)) discontinued = Column(INTEGER(11)) part_status = Column(VARCHAR(40)) sample_status = Column(VARCHAR(40)) p_status_cache = Column(VARCHAR(1000)) s_status_cache = Column(VARCHAR(1000)) creation_date = Column(DATE) ...
review_result = Column(DOUBLE(12, 0))
Next line prediction: <|code_start|> plt.plot(self.t_range, self.data_all[i, :], label='y' + str(i)) if self.unstable is not None: plt.axvline(x=self.unstable, linewidth=3, color='r') plt.show() def main(): str_eqs ="""dy0dt = -10*y[0] + 10*y[1] dy1dt = 28*y[0] - ...
class Simulation(Plugin):
Continue the code snippet: <|code_start|>"""This is an ABACUS plugin. request = { "action": "design" or "singleMutationScan" "id": user_id "inpath": inputFilePath "filename": filename "amount": amount #optional "tag":tag "design": desginpath "mutationScan": scanpath "abacuspath":...
class ABACUS(Plugin):
Predict the next line for this snippet: <|code_start|> class FeatureUser(TableBase): __tablename__ = 'parts_seq_features_by_user' feature_id = Column(INTEGER(11), primary_key=True) feature_type = Column(VARCHAR(200)) start_pos = Column(INTEGER(11)) end_pos = Column(INTEGER(11)) label = Column(...
part_id = Column(INTEGER(11), ForeignKey('parts.part_id'))
Continue the code snippet: <|code_start|> class FeatureUser(TableBase): __tablename__ = 'parts_seq_features_by_user' feature_id = Column(INTEGER(11), primary_key=True) <|code_end|> . Use current file imports: from database import TableBase, Column, ForeignKey, INTEGER, VARCHAR and context (classes, function...
feature_type = Column(VARCHAR(200))
Next line prediction: <|code_start|> class FeatureOfficial(TableBase): __tablename__ = 'parts_seq_features' feature_id = Column(INTEGER(11), primary_key=True) feature_type = Column(VARCHAR(200)) start_pos = Column(INTEGER(11)) end_pos = Column(INTEGER(11)) label = Column(VARCHAR(200)) <|code_e...
part_id = Column(INTEGER(11), ForeignKey('parts.part_id'))
Continue the code snippet: <|code_start|> class FeatureOfficial(TableBase): __tablename__ = 'parts_seq_features' feature_id = Column(INTEGER(11), primary_key=True) <|code_end|> . Use current file imports: from database import TableBase, Column, ForeignKey, INTEGER, VARCHAR and context (classes, functions, o...
feature_type = Column(VARCHAR(200))
Next line prediction: <|code_start|> class Document(TableBase): """An object refer to an actual plugin-managed document. Every actual document is not only saved in plugins' table, but also has an entry here, so that we can easily get all documents belong to a specific user.""" __tablename__ = 'document' ...
def __init__(self, plugin_name: str, doc: PluginDocument):
Using the snippet: <|code_start|> class Document(TableBase): """An object refer to an actual plugin-managed document. Every actual document is not only saved in plugins' table, but also has an entry here, so that we can easily get all documents belong to a specific user.""" __tablename__ = 'document' ...
document_id = Column(Integer(), primary_key=True)
Given the following code snippet before the placeholder: <|code_start|> class Document(TableBase): """An object refer to an actual plugin-managed document. Every actual document is not only saved in plugins' table, but also has an entry here, so that we can easily get all documents belong to a specific user."...
document_id = Column(Integer(), primary_key=True)
Using the snippet: <|code_start|> class Document(TableBase): """An object refer to an actual plugin-managed document. Every actual document is not only saved in plugins' table, but also has an entry here, so that we can easily get all documents belong to a specific user.""" __tablename__ = 'document' ...
plugin_name = Column(String(256))
Given snippet: <|code_start|> class Document(TableBase): """An object refer to an actual plugin-managed document. Every actual document is not only saved in plugins' table, but also has an entry here, so that we can easily get all documents belong to a specific user.""" __tablename__ = 'document' de...
owner = Column(Integer(), ForeignKey('user.id'))
Given the code snippet: <|code_start|> plugin = Blueprint('plugin', __name__) @plugin.route('/', methods=['GET', 'POST']) def plugin_request(): plugin_name = request.values['plugin'] if 'plugin' in request.values else '' req = {v: request.values[v] for v in request.values} if 'file' in request.files and r...
rtv = plugin_manager.send_request(plugin_name, req)
Given snippet: <|code_start|> class Link(TableBase): """A link between two nodes, for path_finder.""" __tablename__ = 'link' link_id = Column(Integer, primary_key=True, autoincrement=True) <|code_end|> , continue by predicting the next line. Consider current file imports: from database import TableBase, ...
tax_id = Column(String(10))
Given the following code snippet before the placeholder: <|code_start|>dis = {} node_count = 0 class State: def __init__(self, f, g, cur, prepath): # f is the distance to src, g is the distance to dst self.f = f self.g = g self.cur = cur self.prepath = prepath def __lt__(self...
for u_node in session.query(biosys_single).filter(biosys_single.gene_id == u):
Predict the next line for this snippet: <|code_start|> p_queue.put(State(s.g + 1 + dis[v], s.g + 1, v, s.prepath + [v])) if (datetime.now() - time_monitor).seconds > 5: yield "Timeout" return def path_finder(s, t, k, maxlen): # s:starting point, t:terminal point, k:num...
class Path_Finder(Plugin):
Based on the snippet: <|code_start|>dis = {} node_count = 0 class State: def __init__(self, f, g, cur, prepath): # f is the distance to src, g is the distance to dst self.f = f self.g = g self.cur = cur self.prepath = prepath def __lt__(self, x): if self.f == x.f: ...
for u_node in session.query(biosys_single).filter(biosys_single.gene_id == u):
Here is a snippet: <|code_start|> return p_queue.put(State(dis[src], 0, src, [src])) while not p_queue.empty(): s = p_queue.get() if s.cur == dst: yield s.prepath cnt += 1 if cnt == pathnum: break for v in Graph[s.cur]: ...
node = session.query(Gene).get(gene_id)
Given the following code snippet before the placeholder: <|code_start|> #from .FeatureOfficial import FeatureOfficial class BiobrickOfficial(TableBase): __tablename__ = 'parts' part_id = Column(INTEGER(11), primary_key=True) <|code_end|> , predict the next line using imports from the current file: from data...
ok = Column(TINYINT(1))
Given snippet: <|code_start|> #from .FeatureOfficial import FeatureOfficial class BiobrickOfficial(TableBase): __tablename__ = 'parts' part_id = Column(INTEGER(11), primary_key=True) ok = Column(TINYINT(1)) <|code_end|> , continue by predicting the next line. Consider current file imports: from database...
part_name = Column(VARCHAR(255))
Here is a snippet: <|code_start|> #from .FeatureOfficial import FeatureOfficial class BiobrickOfficial(TableBase): __tablename__ = 'parts' part_id = Column(INTEGER(11), primary_key=True) ok = Column(TINYINT(1)) part_name = Column(VARCHAR(255)) short_desc = Column(VARCHAR(100)) <|code_end|> . Writ...
description = Column(LONGTEXT)
Predict the next line for this snippet: <|code_start|> #from .FeatureOfficial import FeatureOfficial class BiobrickOfficial(TableBase): __tablename__ = 'parts' part_id = Column(INTEGER(11), primary_key=True) ok = Column(TINYINT(1)) part_name = Column(VARCHAR(255)) short_desc = Column(VARCHAR(100)...
creation_date = Column(DATE)
Predict the next line after this snippet: <|code_start|> #from .FeatureOfficial import FeatureOfficial class BiobrickOfficial(TableBase): __tablename__ = 'parts' part_id = Column(INTEGER(11), primary_key=True) ok = Column(TINYINT(1)) part_name = Column(VARCHAR(255)) short_desc = Column(VARCHAR(10...
m_datetime = Column(DATETIME)
Given the code snippet: <|code_start|> short_desc = Column(VARCHAR(100)) description = Column(LONGTEXT) part_type = Column(VARCHAR(20)) author = Column(VARCHAR(200)) owning_group_id = Column(INTEGER(11)) status = Column(VARCHAR(20)) dominant = Column(TINYINT(1)) informational = Column(TIN...
source = Column(TEXT)
Using the snippet: <|code_start|> owning_group_id = Column(INTEGER(11)) status = Column(VARCHAR(20)) dominant = Column(TINYINT(1)) informational = Column(TINYINT(1)) discontinued = Column(INTEGER(11)) part_status = Column(VARCHAR(40)) sample_status = Column(VARCHAR(40)) p_status_cache = C...
sequence_sha1 = Column(BINARY(20))
Predict the next line after this snippet: <|code_start|> informational = Column(TINYINT(1)) discontinued = Column(INTEGER(11)) part_status = Column(VARCHAR(40)) sample_status = Column(VARCHAR(40)) p_status_cache = Column(VARCHAR(1000)) s_status_cache = Column(VARCHAR(1000)) creation_date = Co...
review_result = Column(DOUBLE(12, 0))
Given snippet: <|code_start|> return {'success': False, 'reason': 'plugin not found'} try: rtv = self.plugins[plugin].process(request) if 'success' not in rtv: rtv['success'] = True except Exception as e: rtv = {'success': False, 'reason': t...
return session.query(self.document_table).get(pid)
Next line prediction: <|code_start|> def get_plugins(self): return self.plugins def send_request(self, plugin, request): if plugin not in self.plugins: return {'success': False, 'reason': 'plugin not found'} try: rtv = self.plugins[plugin].process(request) ...
table.__table__.create(engine)
Next line prediction: <|code_start|> plugin_manager = PluginManager() class Documents: def __init__(self, plugin: Plugin): self.plugin = plugin self.type_name = None self.document_table = None def set_document_type(self, name: str): self.type_name = name def set_document...
doc = Document(self.plugin.name, pdoc)
Given the code snippet: <|code_start|> except Exception as e: rtv = {'success': False, 'reason': type(e).__name__ + ': ' + str(e)} return rtv plugin_manager = PluginManager() class Documents: def __init__(self, plugin: Plugin): self.plugin = plugin self.type_name = Non...
def create(self, pdoc: PluginDocument):
Continue the code snippet: <|code_start|>"""This plugin can search other plugins, list them and auto-load some plugins.""" class Plugins(Plugin): auto_load_list_file = 'plugins/plugins/auto_load_list' def __init__(self): super().__init__() for p in self.auto_load_list: <|code_end|> . Use cu...
plugin_manager.load_plugin(p)
Using the snippet: <|code_start|> def random_string(N): return ''.join(random.choice(string.ascii_uppercase + string.ascii_lowercase + string.digits) for i in range(N)) class User(TableBase, UserMixin): """A user.""" __tablename__ = 'user' <|code_end|> , determine the next line of code. You have imports...
id = Column(Integer, primary_key=True)
Here is a snippet: <|code_start|> def random_string(N): return ''.join(random.choice(string.ascii_uppercase + string.ascii_lowercase + string.digits) for i in range(N)) class User(TableBase, UserMixin): """A user.""" __tablename__ = 'user' <|code_end|> . Write the next line using the current file import...
id = Column(Integer, primary_key=True)
Using the snippet: <|code_start|> def random_string(N): return ''.join(random.choice(string.ascii_uppercase + string.ascii_lowercase + string.digits) for i in range(N)) class User(TableBase, UserMixin): """A user.""" __tablename__ = 'user' id = Column(Integer, primary_key=True) <|code_end|> , determ...
email = Column(String(63), unique=True)
Predict the next line for this snippet: <|code_start|> if os.getenv('FLASK_TESTING'): avatar = Column(String(16777215)) else: avatar = Column(MEDIUMTEXT()) description = Column(Text()) education = Column(Text()) major = Column(Text()) def __init__(self, email, password, username)...
return session.query(cls).filter_by(email=email).first()
Here is a snippet: <|code_start|> def random_string(N): return ''.join(random.choice(string.ascii_uppercase + string.ascii_lowercase + string.digits) for i in range(N)) class User(TableBase, UserMixin): """A user.""" __tablename__ = 'user' id = Column(Integer, primary_key=True) email = Column(St...
description = Column(Text())
Predict the next line for this snippet: <|code_start|> def random_string(N): return ''.join(random.choice(string.ascii_uppercase + string.ascii_lowercase + string.digits) for i in range(N)) class User(TableBase, UserMixin): """A user.""" __tablename__ = 'user' id = Column(Integer, primary_key=True) ...
avatar = Column(MEDIUMTEXT())
Using the snippet: <|code_start|> subprocess.check_output('gcc -o ../logparser/SLCT/slct -O2 ../logparser/SLCT/cslct.c', stderr=subprocess.STDOUT, shell=True) except: print("Compile error! Please check GCC installed.\n") raise headers, regex = gener...
matcher = regexmatch.PatternMatch(outdir=para['savePath'], logformat=log_format)
Given the following code snippet before the placeholder: <|code_start|> class Chromosome: """ A chromosome in this class is a dictionary key: int value: List[Templates] """ def __init__(self, p_templates: dict()): """ The constructor with an attribute of type List of Tem...
def add_template(self, template: Template):
Predict the next line after this snippet: <|code_start|> is_hex1 = re.findall('(^|\s)([0-9a-f]){8,}(\s|$)', log_message) if is_hex1: log_message = re.sub('(^|\s)([0-9a-f]){8,}(\s|$)', sub_sign, log_message) is_mac_address = re.findall('([0-9A-F]{2}[:-]){5,}([0-9A-F]{2})', log_message) if ...
message = Message(log_message.split())
Predict the next line after this snippet: <|code_start|>#!/usr/bin/env python sys.path.append('../') input_dir = '../logs/HDFS/' # The input directory output_dir = 'logmatch_result/' # The result directory log_filepath = input_dir + 'HDFS_2k.log' # The input log file path log_format = '<Date> <Time> <Pid>...
matcher = regexmatch.PatternMatch(outdir=output_dir, n_workers=n_workers, logformat=log_format)