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license: cc-by-4.0
configs:
- config_name: cells
data_files: cells/cells.parquet
- config_name: proteins
data_files: proteins/proteins.parquet
---
# BioReason-Cell-Contextual-Data
Context tables for human cell lines and proteins, for the BioReason Cell project.
## `cells`
14 human cell lines.
| column | description |
|---|---|
| `cell_type` | cell line name |
| `description` | origin, driver mutations, signaling state and post-transcriptional regulatory context of the cell line |
## `proteins`
101 proteins.
| column | description |
|---|---|
| `protein` | gene symbol |
| `protein_name` | UniProt protein name |
| `uniprot_id` | UniProt accession |
| `functional_roles` | mRNA stabilizer, mRNA destabilizer, splicing factor, localization factor, or uncharacterized |
| `protein_function` | function summary focused on mRNA regulation |
| `mirna_crosstalk_roles` | competitive protectors, cooperative enhancers, miRNA biogenesis, miRNA biogenesis inhibitors, ago associated |
| `domains` | protein domains |
| `subcellular_location` | subcellular locations |
| `interacting_proteins` | interacting proteins from this table |
## License
CC BY 4.0
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