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<?xml version="1.0" encoding="UTF-8"?>
<prad:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/clinical/prad/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/clinical/prad/2.7/TCGA_BCR.PRAD_Clinical.xsd" schemaVersion="2.7" xmlns:prad="http://tcga.nci/bcr/xml/clinical/prad/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:clin_shared="http://tcga.nci/bcr/xml/clinical/shared/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:shared_stage="http://tcga.nci/bcr/xml/clinical/shared/stage/2.7" xmlns:prad_nte="http://tcga.nci/bcr/xml/clinical/prad/shared/new_tumor_event/2.7/1.0" xmlns:nte="http://tcga.nci/bcr/xml/clinical/shared/new_tumor_event/2.7" xmlns:rx="http://tcga.nci/bcr/xml/clinical/pharmaceutical/2.7" xmlns:rad="http://tcga.nci/bcr/xml/clinical/radiation/2.7" xmlns:follow_up_v1.0="http://tcga.nci/bcr/xml/clinical/prad/followup/2.7/1.0" xmlns:prad_shared="http://tcga.nci/bcr/xml/clinical/prad/shared/2.7">
<admin:admin>
<admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
<admin:file_uuid xsd_ver="2.6">7E2ED8FD-7842-4722-A070-37896CF6ABD5</admin:file_uuid>
<admin:batch_number xsd_ver="1.17">389.51.0</admin:batch_number>
<admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
<admin:disease_code xsd_ver="2.6">PRAD</admin:disease_code>
<admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
<admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
<admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
<admin:patient_withdrawal>
<admin:withdrawn>false</admin:withdrawn>
</admin:patient_withdrawal>
<admin:program xsi:nil="true" xsd_ver="2.7"/>
<admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
</admin:admin>
<prad:patient>
<admin:additional_studies/>
<clin_shared:tumor_tissue_site preferred_name="submitted_tumor_site" display_order="9999" cde="3427536" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516490">Prostate</clin_shared:tumor_tissue_site>
<shared:other_dx preferred_name="history_other_malignancy" display_order="21" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516507">No</shared:other_dx>
<shared:gender preferred_name="gender" display_order="14" cde="2200604" cde_ver="3.000" xsd_ver="1.8" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516500">MALE</shared:gender>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516545">Alive</clin_shared:vital_status>
<clin_shared:days_to_birth precision="day" xsd_ver="1.12" tier="1" cde="3008233" owner="TSS" procurement_status="Completed" preferred_name="birth_days_to" display_order="20" cde_ver="1.000">-18658</clin_shared:days_to_birth>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">621</clin_shared:days_to_last_followup>
<clin_shared:race_list>
<clin_shared:race preferred_name="race" display_order="96" cde="2192199" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4216678">WHITE</clin_shared:race>
</clin_shared:race_list>
<shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VL</shared:bcr_patient_barcode>
<shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">2A</shared:tissue_source_site>
<shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A8VL</shared:patient_id>
<shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">49197847-CC83-4CE1-8397-D09CEA4C4928</shared:bcr_patient_uuid>
<shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="22" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516508">No</shared:history_of_neoadjuvant_treatment>
<clin_shared:informed_consent_verified preferred_name="patient_consent_status" display_order="82" cde="3288361" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false">YES</clin_shared:informed_consent_verified>
<clin_shared:icd_o_3_site preferred_name="" display_order="9999" cde="3226281" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61.9</clin_shared:icd_o_3_site>
<clin_shared:icd_o_3_histology preferred_name="" display_order="9999" cde="3226275" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">8140/3</clin_shared:icd_o_3_histology>
<clin_shared:icd_10 preferred_name="" display_order="9999" cde="3226287" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61</clin_shared:icd_10>
<clin_shared:tissue_prospective_collection_indicator preferred_name="prospective_collection" display_order="15" cde="3088492" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516501">NO</clin_shared:tissue_prospective_collection_indicator>
<clin_shared:tissue_retrospective_collection_indicator preferred_name="retrospective_collection" display_order="16" cde="3088528" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516502">YES</clin_shared:tissue_retrospective_collection_indicator>
<clin_shared:days_to_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="3131740" owner="TSS" procurement_status="Completed" preferred_name="initial_pathologic_dx_days_to" display_order="9999" cde_ver="1.000">0</clin_shared:days_to_initial_pathologic_diagnosis>
<clin_shared:age_at_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="2006657" owner="TSS" procurement_status="Completed">51</clin_shared:age_at_initial_pathologic_diagnosis>
<clin_shared:year_of_initial_pathologic_diagnosis preferred_name="initial_pathologic_dx_year" display_order="25" cde="2896960" cde_ver="1.000" xsd_ver="1.12" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516511">2010</clin_shared:year_of_initial_pathologic_diagnosis>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516556">TUMOR FREE</clin_shared:person_neoplasm_cancer_status>
<clin_shared:ethnicity preferred_name="ethnicity" display_order="97" cde="2192217" cde_ver="2.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4217282">NOT HISPANIC OR LATINO</clin_shared:ethnicity>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">29</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2014</clin_shared:year_of_form_completion>
<shared:histological_type preferred_name="histologic_diagnosis" display_order="5" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516491">Prostate Adenocarcinoma Acinar Type</shared:histological_type>
<shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="6" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="3516492" xsi:nil="true"/>
<prad:zone_of_origin preferred_name="zone_of_origin" display_order="7" cde="65104" cde_ver="3.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516493">Peripheral Zone</prad:zone_of_origin>
<clin_shared:laterality preferred_name="laterality" display_order="12" cde="827" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516498">Left</clin_shared:laterality>
<prad:tumor_levels>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516499">Middle</prad:tumor_level>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516499">Base</prad:tumor_level>
</prad:tumor_levels>
<clin_shared:initial_pathologic_diagnosis_method preferred_name="method_initial_path_dx" display_order="9999" cde="2757941" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516512">Core needle biopsy</clin_shared:initial_pathologic_diagnosis_method>
<prad:days_to_bone_scan_performed precision="day" xsd_ver="2.4" tier="2" cde="3412936" owner="TSS" procurement_status="Completed" preferred_name="days_to_bone_scan" display_order="34" cde_ver="1.000">21</prad:days_to_bone_scan_performed>
<prad:bone_scan_results preferred_name="bone_scan_results" display_order="35" cde="3351888" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516521">Normal (no evidence of prostate cancer) [cM0]</prad:bone_scan_results>
<prad:diagnostic_ct_abd_pelvis_performed preferred_name="ct_scan_ab_pelvis_indicator" display_order="36" cde="3194099" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516522">NO</prad:diagnostic_ct_abd_pelvis_performed>
<prad:days_to_diagnostic_computed_tomography_performed precision="day" xsd_ver="2.4" tier="2" cde="3414503" owner="TSS" procurement_status="Not Available" preferred_name="days_to_ct_scan_ab_pelvis" display_order="40" cde_ver="1.000"/>
<prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_ct_abd_pelvis_result preferred_name="ct_scan_ab_pelvis_results" display_order="41" cde="3351890" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516527"/>
</prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_mri_performed preferred_name="" display_order="9999" cde="3607491" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516528">NO</prad:diagnostic_mri_performed>
<prad:days_to_diagnostic_mri_performed precision="day" xsd_ver="2.4" tier="2" cde="3414554" owner="TSS" procurement_status="Not Available" preferred_name="days_to_mri" display_order="46" cde_ver="1.000"/>
<prad:diagnostic_mri_results>
<prad:diagnostic_mri_result preferred_name="mri_results" display_order="47" cde="3351891" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516533"/>
</prad:diagnostic_mri_results>
<prad:lymphnodes_examined preferred_name="lymph_nodes_examined" display_order="54" cde="2200396" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516540">YES</prad:lymphnodes_examined>
<prad:number_of_lymphnodes_examined preferred_name="lymph_nodes_examined_count" display_order="56" cde="3" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516542">15</prad:number_of_lymphnodes_examined>
<prad:number_of_lymphnodes_positive_by_he preferred_name="lymph_nodes_examined_he_count" display_order="57" cde="3086388" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516543">0</prad:number_of_lymphnodes_positive_by_he>
<clin_shared:residual_tumor preferred_name="residual_tumor" display_order="58" cde="2608702" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516544">R0</clin_shared:residual_tumor>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516554"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516555"/>
<shared_stage:stage_event system="AJCC">
<shared_stage:system_version preferred_name="ajcc_staging_edition" display_order="36" cde="2722309" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_stage preferred_name="ajcc_clinical_tumor_stage" display_order="9999" cde="3440332" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:pathologic_stage preferred_name="ajcc_pathologic_tumor_stage" display_order="40" cde="3203222" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:tnm_categories>
<shared_stage:clinical_categories>
<shared_stage:clinical_T preferred_name="ajcc_tumor_clinical_ct" display_order="9999" cde="3440328" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Unknown" restricted="false" source_system_identifier="3516513"/>
<shared_stage:clinical_N preferred_name="ajcc_nodes_clinical_cn" display_order="9999" cde="3440330" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_M preferred_name="ajcc_metastasis_clinical_cm" display_order="9999" cde="3440331" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516534">M0</shared_stage:clinical_M>
</shared_stage:clinical_categories>
<shared_stage:pathologic_categories>
<shared_stage:pathologic_T preferred_name="ajcc_tumor_pathologic_pt" display_order="37" cde="3045435" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516536">T2b</shared_stage:pathologic_T>
<shared_stage:pathologic_N preferred_name="ajcc_nodes_pathologic_pn" display_order="38" cde="3203106" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516541">N0</shared_stage:pathologic_N>
<shared_stage:pathologic_M preferred_name="ajcc_metastasis_pathologic_pm" display_order="39" cde="3045439" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:pathologic_categories>
</shared_stage:tnm_categories>
<shared_stage:psa>
<shared_stage:psa_value preferred_name="psa_most_recent_results" display_order="75" cde="3351903" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516561">0.05</shared_stage:psa_value>
<shared_stage:days_to_psa precision="day" xsd_ver="2.6" tier="2" cde="3414608" owner="TSS" procurement_status="Completed" preferred_name="days_to_psa_most_recent" display_order="74" cde_ver="1.000">585</shared_stage:days_to_psa>
</shared_stage:psa>
<shared_stage:gleason_grading>
<shared_stage:gleason_score preferred_name="gleason_score" display_order="10" cde="2534619" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516496">6</shared_stage:gleason_score>
<shared_stage:primary_pattern preferred_name="gleason_pattern_primary" display_order="8" cde="2534617" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516494">3</shared_stage:primary_pattern>
<shared_stage:secondary_pattern preferred_name="gleason_pattern_secondary" display_order="9" cde="2534618" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516495">3</shared_stage:secondary_pattern>
<shared_stage:tertiary_pattern preferred_name="gleason_pattern_tertiary" display_order="11" cde="2783875" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516497">4</shared_stage:tertiary_pattern>
</shared_stage:gleason_grading>
<shared_stage:ann_arbor>
<shared_stage:b_symptoms preferred_name="b_symptoms_present_indicator" display_order="9999" cde="2902402" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:extranodal_involvement preferred_name="extranodal_lymphomatous_involvement" display_order="9999" cde="3364582" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:ann_arbor>
<shared_stage:serum_markers preferred_name="" display_order="9999" cde="3901772" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:igcccg_stage preferred_name="" display_order="9999" cde="3901822" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:masaoka_stage preferred_name="" display_order="9999" cde="3952848" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:stage_event>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516564">NO</clin_shared:postoperative_rx_tx>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516563">NO</clin_shared:radiation_therapy>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516565"/>
<prad:biochemical_recurrence preferred_name="biochemical_recurrence_indicator" display_order="76" cde="3351904" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516562">NO</prad:biochemical_recurrence>
<prad:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<prad_nte:new_tumor_events>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516566">NO</nte:new_tumor_event_after_initial_treatment>
</prad_nte:new_tumor_events>
<rx:drugs/>
<rad:radiations/>
<prad:follow_ups>
<follow_up_v1.0:follow_up version="1.0" sequence="1">
<clin_shared:bcr_followup_barcode preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VL-F71759</clin_shared:bcr_followup_barcode>
<clin_shared:bcr_followup_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">6E1A6CED-30C0-4A4D-A550-82214C73826D</clin_shared:bcr_followup_uuid>
<clin_shared:followup_case_report_form_submission_reason preferred_name="followup_reason" display_order="4" cde="3233305" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136738">Scheduled Follow-up Submission</clin_shared:followup_case_report_form_submission_reason>
<clin_shared:lost_follow_up preferred_name="followup_lost_to" display_order="5" cde="61333" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136739">NO</clin_shared:lost_follow_up>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136740"/>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136741"/>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136743">Alive</clin_shared:vital_status>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136742"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">621</clin_shared:days_to_last_followup>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136752"/>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136753"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136754"/>
<clin_shared:followup_treatment_success preferred_name="treatment_outcome_at_tcga_followup" display_order="45" cde="3104050" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136779">Complete Remission/Response</clin_shared:followup_treatment_success>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136755">NO</nte:new_tumor_event_after_initial_treatment>
<nte:days_to_new_tumor_event_after_initial_treatment precision="day" xsd_ver="2.2" tier="1" cde="3392464" owner="TSS" procurement_status="Not Applicable" preferred_name="new_tumor_event_dx_days_to" display_order="85" cde_ver="1.000"/>
<nte:new_neoplasm_event_type preferred_name="new_tumor_event_type" display_order="81" cde="3119721" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136756"/>
<nte:new_neoplasm_event_occurrence_anatomic_site preferred_name="new_tumor_event_site" display_order="86" cde="3108271" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136765"/>
<nte:new_neoplasm_occurrence_anatomic_site_text preferred_name="new_tumor_event_site_other" display_order="87" cde="3128033" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136766"/>
<nte:additional_radiation_therapy preferred_name="new_tumor_event_radiation_tx" display_order="94" cde="3427615" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136777"/>
<nte:additional_pharmaceutical_therapy preferred_name="new_tumor_event_pharmaceutical_tx" display_order="95" cde="3427616" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136778"/>
<follow_up_v1.0:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<follow_up_v1.0:days_to_second_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414617" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_second" display_order="38" cde_ver="1.000"/>
<follow_up_v1.0:days_to_third_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414621" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_third" display_order="42" cde_ver="1.000"/>
<prad_shared:tumor_progression_post_ht preferred_name="progression_after_hormone_tx" display_order="88" cde="3158820" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136767"/>
<follow_up_v1.0:type_ofprogression_of_disease_ht preferred_name="progression_after_hormone_tx_type" display_order="89" cde="3354944" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136768"/>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">31</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2015</clin_shared:year_of_form_completion>
</follow_up_v1.0:follow_up>
</prad:follow_ups>
</prad:patient>
</prad:tcga_bcr>
|
<?xml version="1.0" encoding="UTF-8"?>
<prad:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/clinical/prad/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/clinical/prad/2.7/TCGA_BCR.PRAD_Clinical.xsd" schemaVersion="2.7" xmlns:prad="http://tcga.nci/bcr/xml/clinical/prad/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:clin_shared="http://tcga.nci/bcr/xml/clinical/shared/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:shared_stage="http://tcga.nci/bcr/xml/clinical/shared/stage/2.7" xmlns:prad_nte="http://tcga.nci/bcr/xml/clinical/prad/shared/new_tumor_event/2.7/1.0" xmlns:nte="http://tcga.nci/bcr/xml/clinical/shared/new_tumor_event/2.7" xmlns:rx="http://tcga.nci/bcr/xml/clinical/pharmaceutical/2.7" xmlns:rad="http://tcga.nci/bcr/xml/clinical/radiation/2.7" xmlns:follow_up_v1.0="http://tcga.nci/bcr/xml/clinical/prad/followup/2.7/1.0" xmlns:prad_shared="http://tcga.nci/bcr/xml/clinical/prad/shared/2.7">
<admin:admin>
<admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
<admin:file_uuid xsd_ver="2.6">13F0E1EF-4F73-442C-A662-9143555CBE82</admin:file_uuid>
<admin:batch_number xsd_ver="1.17">389.51.0</admin:batch_number>
<admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
<admin:disease_code xsd_ver="2.6">PRAD</admin:disease_code>
<admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
<admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
<admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
<admin:patient_withdrawal>
<admin:withdrawn>false</admin:withdrawn>
</admin:patient_withdrawal>
<admin:program xsi:nil="true" xsd_ver="2.7"/>
<admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
</admin:admin>
<prad:patient>
<admin:additional_studies/>
<clin_shared:tumor_tissue_site preferred_name="submitted_tumor_site" display_order="9999" cde="3427536" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516775">Prostate</clin_shared:tumor_tissue_site>
<shared:other_dx preferred_name="history_other_malignancy" display_order="21" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516792">No</shared:other_dx>
<shared:gender preferred_name="gender" display_order="14" cde="2200604" cde_ver="3.000" xsd_ver="1.8" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516785">MALE</shared:gender>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516830">Alive</clin_shared:vital_status>
<clin_shared:days_to_birth precision="day" xsd_ver="1.12" tier="1" cde="3008233" owner="TSS" procurement_status="Completed" preferred_name="birth_days_to" display_order="20" cde_ver="1.000">-20958</clin_shared:days_to_birth>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">1332</clin_shared:days_to_last_followup>
<clin_shared:race_list>
<clin_shared:race preferred_name="race" display_order="96" cde="2192199" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4216227">WHITE</clin_shared:race>
</clin_shared:race_list>
<shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VO</shared:bcr_patient_barcode>
<shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">2A</shared:tissue_source_site>
<shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A8VO</shared:patient_id>
<shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">91C0D161-2B59-4B7A-8C19-6D26DEA31849</shared:bcr_patient_uuid>
<shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="22" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516793">No</shared:history_of_neoadjuvant_treatment>
<clin_shared:informed_consent_verified preferred_name="patient_consent_status" display_order="82" cde="3288361" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false">YES</clin_shared:informed_consent_verified>
<clin_shared:icd_o_3_site preferred_name="" display_order="9999" cde="3226281" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61.9</clin_shared:icd_o_3_site>
<clin_shared:icd_o_3_histology preferred_name="" display_order="9999" cde="3226275" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">8140/3</clin_shared:icd_o_3_histology>
<clin_shared:icd_10 preferred_name="" display_order="9999" cde="3226287" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61</clin_shared:icd_10>
<clin_shared:tissue_prospective_collection_indicator preferred_name="prospective_collection" display_order="15" cde="3088492" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516786">NO</clin_shared:tissue_prospective_collection_indicator>
<clin_shared:tissue_retrospective_collection_indicator preferred_name="retrospective_collection" display_order="16" cde="3088528" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516787">YES</clin_shared:tissue_retrospective_collection_indicator>
<clin_shared:days_to_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="3131740" owner="TSS" procurement_status="Completed" preferred_name="initial_pathologic_dx_days_to" display_order="9999" cde_ver="1.000">0</clin_shared:days_to_initial_pathologic_diagnosis>
<clin_shared:age_at_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="2006657" owner="TSS" procurement_status="Completed">57</clin_shared:age_at_initial_pathologic_diagnosis>
<clin_shared:year_of_initial_pathologic_diagnosis preferred_name="initial_pathologic_dx_year" display_order="25" cde="2896960" cde_ver="1.000" xsd_ver="1.12" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516796">2010</clin_shared:year_of_initial_pathologic_diagnosis>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516841">TUMOR FREE</clin_shared:person_neoplasm_cancer_status>
<clin_shared:ethnicity preferred_name="ethnicity" display_order="97" cde="2192217" cde_ver="2.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4217001">NOT HISPANIC OR LATINO</clin_shared:ethnicity>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">30</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2014</clin_shared:year_of_form_completion>
<shared:histological_type preferred_name="histologic_diagnosis" display_order="5" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516776">Prostate Adenocarcinoma Acinar Type</shared:histological_type>
<shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="6" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="3516777" xsi:nil="true"/>
<prad:zone_of_origin preferred_name="zone_of_origin" display_order="7" cde="65104" cde_ver="3.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516778">Overlapping / Multiple Zones</prad:zone_of_origin>
<clin_shared:laterality preferred_name="laterality" display_order="12" cde="827" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516783">Bilateral</clin_shared:laterality>
<prad:tumor_levels>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516784">Apex</prad:tumor_level>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516784">Middle</prad:tumor_level>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516784">Base</prad:tumor_level>
</prad:tumor_levels>
<clin_shared:initial_pathologic_diagnosis_method preferred_name="method_initial_path_dx" display_order="9999" cde="2757941" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516797">Core needle biopsy</clin_shared:initial_pathologic_diagnosis_method>
<prad:days_to_bone_scan_performed precision="day" xsd_ver="2.4" tier="2" cde="3412936" owner="TSS" procurement_status="Completed" preferred_name="days_to_bone_scan" display_order="34" cde_ver="1.000">22</prad:days_to_bone_scan_performed>
<prad:bone_scan_results preferred_name="bone_scan_results" display_order="35" cde="3351888" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516806">Normal (no evidence of prostate cancer) [cM0]</prad:bone_scan_results>
<prad:diagnostic_ct_abd_pelvis_performed preferred_name="ct_scan_ab_pelvis_indicator" display_order="36" cde="3194099" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516807">YES</prad:diagnostic_ct_abd_pelvis_performed>
<prad:days_to_diagnostic_computed_tomography_performed precision="day" xsd_ver="2.4" tier="2" cde="3414503" owner="TSS" procurement_status="Completed" preferred_name="days_to_ct_scan_ab_pelvis" display_order="40" cde_ver="1.000">11</prad:days_to_diagnostic_computed_tomography_performed>
<prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_ct_abd_pelvis_result preferred_name="ct_scan_ab_pelvis_results" display_order="41" cde="3351890" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516812">No Evidence of Extraprostatic Extension</prad:diagnostic_ct_abd_pelvis_result>
</prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_mri_performed preferred_name="" display_order="9999" cde="3607491" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516813">YES</prad:diagnostic_mri_performed>
<prad:days_to_diagnostic_mri_performed precision="day" xsd_ver="2.4" tier="2" cde="3414554" owner="TSS" procurement_status="Completed" preferred_name="days_to_mri" display_order="46" cde_ver="1.000">84</prad:days_to_diagnostic_mri_performed>
<prad:diagnostic_mri_results>
<prad:diagnostic_mri_result preferred_name="mri_results" display_order="47" cde="3351891" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516818">Extraprostatic Extension Localized (e.g. seminal vesicles)</prad:diagnostic_mri_result>
</prad:diagnostic_mri_results>
<prad:lymphnodes_examined preferred_name="lymph_nodes_examined" display_order="54" cde="2200396" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516825">NO</prad:lymphnodes_examined>
<prad:number_of_lymphnodes_examined preferred_name="lymph_nodes_examined_count" display_order="56" cde="3" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516827"/>
<prad:number_of_lymphnodes_positive_by_he preferred_name="lymph_nodes_examined_he_count" display_order="57" cde="3086388" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516828"/>
<clin_shared:residual_tumor preferred_name="residual_tumor" display_order="58" cde="2608702" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516829">R1</clin_shared:residual_tumor>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516839"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516840"/>
<shared_stage:stage_event system="AJCC">
<shared_stage:system_version preferred_name="ajcc_staging_edition" display_order="36" cde="2722309" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_stage preferred_name="ajcc_clinical_tumor_stage" display_order="9999" cde="3440332" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:pathologic_stage preferred_name="ajcc_pathologic_tumor_stage" display_order="40" cde="3203222" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:tnm_categories>
<shared_stage:clinical_categories>
<shared_stage:clinical_T preferred_name="ajcc_tumor_clinical_ct" display_order="9999" cde="3440328" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516798">T1c</shared_stage:clinical_T>
<shared_stage:clinical_N preferred_name="ajcc_nodes_clinical_cn" display_order="9999" cde="3440330" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_M preferred_name="ajcc_metastasis_clinical_cm" display_order="9999" cde="3440331" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516819">M0</shared_stage:clinical_M>
</shared_stage:clinical_categories>
<shared_stage:pathologic_categories>
<shared_stage:pathologic_T preferred_name="ajcc_tumor_pathologic_pt" display_order="37" cde="3045435" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516823">T3a</shared_stage:pathologic_T>
<shared_stage:pathologic_N preferred_name="ajcc_nodes_pathologic_pn" display_order="38" cde="3203106" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516826"/>
<shared_stage:pathologic_M preferred_name="ajcc_metastasis_pathologic_pm" display_order="39" cde="3045439" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:pathologic_categories>
</shared_stage:tnm_categories>
<shared_stage:psa>
<shared_stage:psa_value preferred_name="psa_most_recent_results" display_order="75" cde="3351903" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516846">0.05</shared_stage:psa_value>
<shared_stage:days_to_psa precision="day" xsd_ver="2.6" tier="2" cde="3414608" owner="TSS" procurement_status="Completed" preferred_name="days_to_psa_most_recent" display_order="74" cde_ver="1.000">1332</shared_stage:days_to_psa>
</shared_stage:psa>
<shared_stage:gleason_grading>
<shared_stage:gleason_score preferred_name="gleason_score" display_order="10" cde="2534619" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516781">6</shared_stage:gleason_score>
<shared_stage:primary_pattern preferred_name="gleason_pattern_primary" display_order="8" cde="2534617" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516779">3</shared_stage:primary_pattern>
<shared_stage:secondary_pattern preferred_name="gleason_pattern_secondary" display_order="9" cde="2534618" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516780">3</shared_stage:secondary_pattern>
<shared_stage:tertiary_pattern preferred_name="gleason_pattern_tertiary" display_order="11" cde="2783875" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516782">4</shared_stage:tertiary_pattern>
</shared_stage:gleason_grading>
<shared_stage:ann_arbor>
<shared_stage:b_symptoms preferred_name="b_symptoms_present_indicator" display_order="9999" cde="2902402" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:extranodal_involvement preferred_name="extranodal_lymphomatous_involvement" display_order="9999" cde="3364582" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:ann_arbor>
<shared_stage:serum_markers preferred_name="" display_order="9999" cde="3901772" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:igcccg_stage preferred_name="" display_order="9999" cde="3901822" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:masaoka_stage preferred_name="" display_order="9999" cde="3952848" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:stage_event>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516849">NO</clin_shared:postoperative_rx_tx>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516848">NO</clin_shared:radiation_therapy>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3516850"/>
<prad:biochemical_recurrence preferred_name="biochemical_recurrence_indicator" display_order="76" cde="3351904" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516847">NO</prad:biochemical_recurrence>
<prad:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<prad_nte:new_tumor_events>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3516851">NO</nte:new_tumor_event_after_initial_treatment>
</prad_nte:new_tumor_events>
<rx:drugs/>
<rad:radiations/>
<prad:follow_ups>
<follow_up_v1.0:follow_up version="1.0" sequence="1">
<clin_shared:bcr_followup_barcode preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VO-F71780</clin_shared:bcr_followup_barcode>
<clin_shared:bcr_followup_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">3A8226A3-E762-4CD4-A32A-64E485053187</clin_shared:bcr_followup_uuid>
<clin_shared:followup_case_report_form_submission_reason preferred_name="followup_reason" display_order="4" cde="3233305" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136608">Scheduled Follow-up Submission</clin_shared:followup_case_report_form_submission_reason>
<clin_shared:lost_follow_up preferred_name="followup_lost_to" display_order="5" cde="61333" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136609">NO</clin_shared:lost_follow_up>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136610">NO</clin_shared:radiation_therapy>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136611">NO</clin_shared:postoperative_rx_tx>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136613">Alive</clin_shared:vital_status>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136612"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">1701</clin_shared:days_to_last_followup>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136622"/>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136623"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136624"/>
<clin_shared:followup_treatment_success preferred_name="treatment_outcome_at_tcga_followup" display_order="45" cde="3104050" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136649">Complete Remission/Response</clin_shared:followup_treatment_success>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4136625">NO</nte:new_tumor_event_after_initial_treatment>
<nte:days_to_new_tumor_event_after_initial_treatment precision="day" xsd_ver="2.2" tier="1" cde="3392464" owner="TSS" procurement_status="Not Applicable" preferred_name="new_tumor_event_dx_days_to" display_order="85" cde_ver="1.000"/>
<nte:new_neoplasm_event_type preferred_name="new_tumor_event_type" display_order="81" cde="3119721" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136626"/>
<nte:new_neoplasm_event_occurrence_anatomic_site preferred_name="new_tumor_event_site" display_order="86" cde="3108271" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136635"/>
<nte:new_neoplasm_occurrence_anatomic_site_text preferred_name="new_tumor_event_site_other" display_order="87" cde="3128033" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136636"/>
<nte:additional_radiation_therapy preferred_name="new_tumor_event_radiation_tx" display_order="94" cde="3427615" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136647"/>
<nte:additional_pharmaceutical_therapy preferred_name="new_tumor_event_pharmaceutical_tx" display_order="95" cde="3427616" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136648"/>
<follow_up_v1.0:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<follow_up_v1.0:days_to_second_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414617" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_second" display_order="38" cde_ver="1.000"/>
<follow_up_v1.0:days_to_third_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414621" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_third" display_order="42" cde_ver="1.000"/>
<prad_shared:tumor_progression_post_ht preferred_name="progression_after_hormone_tx" display_order="88" cde="3158820" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136637"/>
<follow_up_v1.0:type_ofprogression_of_disease_ht preferred_name="progression_after_hormone_tx_type" display_order="89" cde="3354944" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4136638"/>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">31</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2015</clin_shared:year_of_form_completion>
</follow_up_v1.0:follow_up>
</prad:follow_ups>
</prad:patient>
</prad:tcga_bcr>
|
<?xml version="1.0" encoding="UTF-8"?>
<prad:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/clinical/prad/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/clinical/prad/2.7/TCGA_BCR.PRAD_Clinical.xsd" schemaVersion="2.7" xmlns:prad="http://tcga.nci/bcr/xml/clinical/prad/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:clin_shared="http://tcga.nci/bcr/xml/clinical/shared/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:shared_stage="http://tcga.nci/bcr/xml/clinical/shared/stage/2.7" xmlns:prad_nte="http://tcga.nci/bcr/xml/clinical/prad/shared/new_tumor_event/2.7/1.0" xmlns:nte="http://tcga.nci/bcr/xml/clinical/shared/new_tumor_event/2.7" xmlns:rx="http://tcga.nci/bcr/xml/clinical/pharmaceutical/2.7" xmlns:rad="http://tcga.nci/bcr/xml/clinical/radiation/2.7" xmlns:follow_up_v1.0="http://tcga.nci/bcr/xml/clinical/prad/followup/2.7/1.0" xmlns:prad_shared="http://tcga.nci/bcr/xml/clinical/prad/shared/2.7">
<admin:admin>
<admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
<admin:file_uuid xsd_ver="2.6">89B056B9-2922-4AB0-A282-83A2D28DEE09</admin:file_uuid>
<admin:batch_number xsd_ver="1.17">389.51.0</admin:batch_number>
<admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
<admin:disease_code xsd_ver="2.6">PRAD</admin:disease_code>
<admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
<admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
<admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
<admin:patient_withdrawal>
<admin:withdrawn>false</admin:withdrawn>
</admin:patient_withdrawal>
<admin:program xsi:nil="true" xsd_ver="2.7"/>
<admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
</admin:admin>
<prad:patient>
<admin:additional_studies/>
<clin_shared:tumor_tissue_site preferred_name="submitted_tumor_site" display_order="9999" cde="3427536" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517155">Prostate</clin_shared:tumor_tissue_site>
<shared:other_dx preferred_name="history_other_malignancy" display_order="21" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517172">No</shared:other_dx>
<shared:gender preferred_name="gender" display_order="14" cde="2200604" cde_ver="3.000" xsd_ver="1.8" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517165">MALE</shared:gender>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517210">Alive</clin_shared:vital_status>
<clin_shared:days_to_birth precision="day" xsd_ver="1.12" tier="1" cde="3008233" owner="TSS" procurement_status="Completed" preferred_name="birth_days_to" display_order="20" cde_ver="1.000">-17365</clin_shared:days_to_birth>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">995</clin_shared:days_to_last_followup>
<clin_shared:race_list>
<clin_shared:race preferred_name="race" display_order="96" cde="2192199" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4217095">ASIAN</clin_shared:race>
</clin_shared:race_list>
<shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VT</shared:bcr_patient_barcode>
<shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">2A</shared:tissue_source_site>
<shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A8VT</shared:patient_id>
<shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">931B549F-B9F2-4E8D-83ED-FF663671883C</shared:bcr_patient_uuid>
<shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="22" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517173">No</shared:history_of_neoadjuvant_treatment>
<clin_shared:informed_consent_verified preferred_name="patient_consent_status" display_order="82" cde="3288361" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false">YES</clin_shared:informed_consent_verified>
<clin_shared:icd_o_3_site preferred_name="" display_order="9999" cde="3226281" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61.9</clin_shared:icd_o_3_site>
<clin_shared:icd_o_3_histology preferred_name="" display_order="9999" cde="3226275" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">8140/3</clin_shared:icd_o_3_histology>
<clin_shared:icd_10 preferred_name="" display_order="9999" cde="3226287" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61</clin_shared:icd_10>
<clin_shared:tissue_prospective_collection_indicator preferred_name="prospective_collection" display_order="15" cde="3088492" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517166">NO</clin_shared:tissue_prospective_collection_indicator>
<clin_shared:tissue_retrospective_collection_indicator preferred_name="retrospective_collection" display_order="16" cde="3088528" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517167">YES</clin_shared:tissue_retrospective_collection_indicator>
<clin_shared:days_to_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="3131740" owner="TSS" procurement_status="Completed" preferred_name="initial_pathologic_dx_days_to" display_order="9999" cde_ver="1.000">0</clin_shared:days_to_initial_pathologic_diagnosis>
<clin_shared:age_at_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="2006657" owner="TSS" procurement_status="Completed">47</clin_shared:age_at_initial_pathologic_diagnosis>
<clin_shared:year_of_initial_pathologic_diagnosis preferred_name="initial_pathologic_dx_year" display_order="25" cde="2896960" cde_ver="1.000" xsd_ver="1.12" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517176">2011</clin_shared:year_of_initial_pathologic_diagnosis>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Discrepancy" restricted="false" source_system_identifier="3517221" xsi:nil="true"/>
<clin_shared:ethnicity preferred_name="ethnicity" display_order="97" cde="2192217" cde_ver="2.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4216488">NOT HISPANIC OR LATINO</clin_shared:ethnicity>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">29</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2014</clin_shared:year_of_form_completion>
<shared:histological_type preferred_name="histologic_diagnosis" display_order="5" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517156">Prostate Adenocarcinoma Acinar Type</shared:histological_type>
<shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="6" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="3517157" xsi:nil="true"/>
<prad:zone_of_origin preferred_name="zone_of_origin" display_order="7" cde="65104" cde_ver="3.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517158">Overlapping / Multiple Zones</prad:zone_of_origin>
<clin_shared:laterality preferred_name="laterality" display_order="12" cde="827" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517163">Bilateral</clin_shared:laterality>
<prad:tumor_levels>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517164">Apex</prad:tumor_level>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517164">Middle</prad:tumor_level>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517164">Base</prad:tumor_level>
</prad:tumor_levels>
<clin_shared:initial_pathologic_diagnosis_method preferred_name="method_initial_path_dx" display_order="9999" cde="2757941" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517177">Core needle biopsy</clin_shared:initial_pathologic_diagnosis_method>
<prad:days_to_bone_scan_performed precision="day" xsd_ver="2.4" tier="2" cde="3412936" owner="TSS" procurement_status="Completed" preferred_name="days_to_bone_scan" display_order="34" cde_ver="1.000">4</prad:days_to_bone_scan_performed>
<prad:bone_scan_results preferred_name="bone_scan_results" display_order="35" cde="3351888" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517186">Normal (no evidence of prostate cancer) [cM0]</prad:bone_scan_results>
<prad:diagnostic_ct_abd_pelvis_performed preferred_name="ct_scan_ab_pelvis_indicator" display_order="36" cde="3194099" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517187">YES</prad:diagnostic_ct_abd_pelvis_performed>
<prad:days_to_diagnostic_computed_tomography_performed precision="day" xsd_ver="2.4" tier="2" cde="3414503" owner="TSS" procurement_status="Completed" preferred_name="days_to_ct_scan_ab_pelvis" display_order="40" cde_ver="1.000">-2</prad:days_to_diagnostic_computed_tomography_performed>
<prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_ct_abd_pelvis_result preferred_name="ct_scan_ab_pelvis_results" display_order="41" cde="3351890" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517192">No Evidence of Extraprostatic Extension</prad:diagnostic_ct_abd_pelvis_result>
</prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_mri_performed preferred_name="" display_order="9999" cde="3607491" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517193">YES</prad:diagnostic_mri_performed>
<prad:days_to_diagnostic_mri_performed precision="day" xsd_ver="2.4" tier="2" cde="3414554" owner="TSS" procurement_status="Completed" preferred_name="days_to_mri" display_order="46" cde_ver="1.000">4</prad:days_to_diagnostic_mri_performed>
<prad:diagnostic_mri_results>
<prad:diagnostic_mri_result preferred_name="mri_results" display_order="47" cde="3351891" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517198">No Evidence of Extraprostatic Extension</prad:diagnostic_mri_result>
</prad:diagnostic_mri_results>
<prad:lymphnodes_examined preferred_name="lymph_nodes_examined" display_order="54" cde="2200396" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517205">YES</prad:lymphnodes_examined>
<prad:number_of_lymphnodes_examined preferred_name="lymph_nodes_examined_count" display_order="56" cde="3" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517207">16</prad:number_of_lymphnodes_examined>
<prad:number_of_lymphnodes_positive_by_he preferred_name="lymph_nodes_examined_he_count" display_order="57" cde="3086388" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517208">2</prad:number_of_lymphnodes_positive_by_he>
<clin_shared:residual_tumor preferred_name="residual_tumor" display_order="58" cde="2608702" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517209">R1</clin_shared:residual_tumor>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517219"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517220"/>
<shared_stage:stage_event system="AJCC">
<shared_stage:system_version preferred_name="ajcc_staging_edition" display_order="36" cde="2722309" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_stage preferred_name="ajcc_clinical_tumor_stage" display_order="9999" cde="3440332" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:pathologic_stage preferred_name="ajcc_pathologic_tumor_stage" display_order="40" cde="3203222" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:tnm_categories>
<shared_stage:clinical_categories>
<shared_stage:clinical_T preferred_name="ajcc_tumor_clinical_ct" display_order="9999" cde="3440328" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517179">T2c</shared_stage:clinical_T>
<shared_stage:clinical_N preferred_name="ajcc_nodes_clinical_cn" display_order="9999" cde="3440330" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_M preferred_name="ajcc_metastasis_clinical_cm" display_order="9999" cde="3440331" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517199">M0</shared_stage:clinical_M>
</shared_stage:clinical_categories>
<shared_stage:pathologic_categories>
<shared_stage:pathologic_T preferred_name="ajcc_tumor_pathologic_pt" display_order="37" cde="3045435" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517204">T4</shared_stage:pathologic_T>
<shared_stage:pathologic_N preferred_name="ajcc_nodes_pathologic_pn" display_order="38" cde="3203106" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517206">N1</shared_stage:pathologic_N>
<shared_stage:pathologic_M preferred_name="ajcc_metastasis_pathologic_pm" display_order="39" cde="3045439" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:pathologic_categories>
</shared_stage:tnm_categories>
<shared_stage:psa>
<shared_stage:psa_value preferred_name="psa_most_recent_results" display_order="75" cde="3351903" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517226">0.05</shared_stage:psa_value>
<shared_stage:days_to_psa precision="day" xsd_ver="2.6" tier="2" cde="3414608" owner="TSS" procurement_status="Completed" preferred_name="days_to_psa_most_recent" display_order="74" cde_ver="1.000">995</shared_stage:days_to_psa>
</shared_stage:psa>
<shared_stage:gleason_grading>
<shared_stage:gleason_score preferred_name="gleason_score" display_order="10" cde="2534619" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517161">9</shared_stage:gleason_score>
<shared_stage:primary_pattern preferred_name="gleason_pattern_primary" display_order="8" cde="2534617" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517159">4</shared_stage:primary_pattern>
<shared_stage:secondary_pattern preferred_name="gleason_pattern_secondary" display_order="9" cde="2534618" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517160">5</shared_stage:secondary_pattern>
<shared_stage:tertiary_pattern preferred_name="gleason_pattern_tertiary" display_order="11" cde="2783875" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517162"/>
</shared_stage:gleason_grading>
<shared_stage:ann_arbor>
<shared_stage:b_symptoms preferred_name="b_symptoms_present_indicator" display_order="9999" cde="2902402" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:extranodal_involvement preferred_name="extranodal_lymphomatous_involvement" display_order="9999" cde="3364582" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:ann_arbor>
<shared_stage:serum_markers preferred_name="" display_order="9999" cde="3901772" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:igcccg_stage preferred_name="" display_order="9999" cde="3901822" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:masaoka_stage preferred_name="" display_order="9999" cde="3952848" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:stage_event>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517229">YES</clin_shared:postoperative_rx_tx>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517228">YES</clin_shared:radiation_therapy>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Discrepancy" restricted="false" source_system_identifier="3517230" xsi:nil="true"/>
<prad:biochemical_recurrence preferred_name="biochemical_recurrence_indicator" display_order="76" cde="3351904" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517227">NO</prad:biochemical_recurrence>
<prad:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<prad_nte:new_tumor_events>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517231">NO</nte:new_tumor_event_after_initial_treatment>
</prad_nte:new_tumor_events>
<rx:drugs>
<rx:drug>
<rx:tx_on_clinical_trial preferred_name="" display_order="9999" cde="3925111" cde_ver="" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842930">NO</rx:tx_on_clinical_trial>
<rx:regimen_number preferred_name="" display_order="9999" cde="2744948" cde_ver="" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<rx:bcr_drug_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VT-D64628</rx:bcr_drug_barcode>
<rx:bcr_drug_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">9804256C-57A6-4DD3-9AAA-5E51F57DAA41</rx:bcr_drug_uuid>
<rx:total_dose preferred_name="total_dose" display_order="999" cde="1515" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<rx:total_dose_units preferred_name="pharmaceutical_tx_total_dose_units" display_order="999" cde="3088785" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<rx:prescribed_dose preferred_name="prescribed_dose" display_order="999" cde="2184728" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<rx:prescribed_dose_units preferred_name="pharmaceutical_tx_dose_units" display_order="999" cde="3065815" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<rx:number_cycles preferred_name="pharma_adjuvant_cycles_count" display_order="999" cde="62590" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<rx:days_to_drug_therapy_start precision="day" xsd_ver="1.12" tier="2" cde="3392465" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_started_days_to" display_order="26" cde_ver="1.000">85</rx:days_to_drug_therapy_start>
<rx:days_to_drug_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3392470" owner="TSS" procurement_status="Completed" preferred_name="pharmaceutical_tx_ended_days_to" display_order="16" cde_ver="1.000">1086</rx:days_to_drug_therapy_end>
<rx:therapy_types>
<rx:therapy_type preferred_name="pharmaceutical_therapy_type" display_order="7" cde="2793530" cde_ver="1.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842933">Hormone Therapy</rx:therapy_type>
<rx:therapy_type_notes preferred_name="pharma_type_other" display_order="999" cde="2001762" cde_ver="4.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
</rx:therapy_types>
<rx:drug_name preferred_name="pharmaceutical_therapy_drug_name" display_order="22" cde="2975232" cde_ver="1.000" xsd_ver="1.10" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842931">Lupron</rx:drug_name>
<rx:clinical_trail_drug_classification preferred_name="clinical_trial_drug_classification" display_order="6" cde="3378323" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3842932"/>
<clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<rx:route_of_administrations>
<rx:route_of_administration preferred_name="route_of_administration" display_order="999" cde="2003586" cde_ver="6.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
</rx:route_of_administrations>
<rx:therapy_ongoing preferred_name="pharmaceutical_tx_ongoing_indicator" display_order="12" cde="3103479" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842938">NO</rx:therapy_ongoing>
<clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842943">Stable Disease</clin_shared:measure_of_response>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">4</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">12</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2014</clin_shared:year_of_form_completion>
</rx:drug>
</rx:drugs>
<rad:radiations>
<rad:radiation>
<rad:bcr_radiation_barcode xsd_ver="1.15" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VT-R64625</rad:bcr_radiation_barcode>
<rad:bcr_radiation_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">75D9201B-00AF-41E6-BD55-F4093E8698EA</rad:bcr_radiation_uuid>
<rad:days_to_radiation_therapy_start precision="day" xsd_ver="1.12" tier="2" cde="3008313" owner="TSS" procurement_status="Completed" preferred_name="radiation_therapy_started_days_to" display_order="33" cde_ver="1.000">137</rad:days_to_radiation_therapy_start>
<rad:days_to_radiation_therapy_end precision="day" xsd_ver="1.12" tier="2" cde="3008333" owner="TSS" procurement_status="Completed" preferred_name="radiation_therapy_ended_days_to" display_order="17" cde_ver="1.000">193</rad:days_to_radiation_therapy_end>
<rad:radiation_type preferred_name="radiation_therapy_type" display_order="4" cde="2842944" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842891">External</rad:radiation_type>
<rad:radiation_type_notes preferred_name="radiation_type_other" display_order="999" cde="2195477" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<rad:radiation_dosage preferred_name="radiation_total_dose" display_order="6" cde="2721441" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842893">7200</rad:radiation_dosage>
<rad:units preferred_name="radiation_adjuvant_units" display_order="7" cde="61446" cde_ver="3.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842894">cGy</rad:units>
<rad:numfractions preferred_name="radiation_adjuvant_fractions_total" display_order="8" cde="61465" cde_ver="3.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3842895"/>
<rad:anatomic_treatment_site preferred_name="radiation_therapy_site" display_order="5" cde="2793522" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842892">Primary Tumor Field</rad:anatomic_treatment_site>
<clin_shared:regimen_indication preferred_name="therapy_regimen" display_order="999" cde="2793511" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<clin_shared:regimen_indication_notes preferred_name="therapy_regimen_other" display_order="999" cde="2793516" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<rad:radiation_treatment_ongoing preferred_name="radiation_therapy_ongoing_indicator" display_order="13" cde="2842745" cde_ver="1.000" xsd_ver="1.12" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842900">NO</rad:radiation_treatment_ongoing>
<rad:course_number preferred_name="course_number" display_order="999" cde="2732184" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Not Available" restricted="false"/>
<clin_shared:measure_of_response preferred_name="treatment_best_response" display_order="17" cde="2857291" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3842905">Stable Disease</clin_shared:measure_of_response>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">4</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">12</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2014</clin_shared:year_of_form_completion>
</rad:radiation>
</rad:radiations>
<prad:follow_ups>
<follow_up_v1.0:follow_up version="1.0" sequence="1">
<clin_shared:bcr_followup_barcode preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VT-F71798</clin_shared:bcr_followup_barcode>
<clin_shared:bcr_followup_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">2194A7E8-9DD7-4E55-9EF6-BACD266E1E90</clin_shared:bcr_followup_uuid>
<clin_shared:followup_case_report_form_submission_reason preferred_name="followup_reason" display_order="4" cde="3233305" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137453">Scheduled Follow-up Submission</clin_shared:followup_case_report_form_submission_reason>
<clin_shared:lost_follow_up preferred_name="followup_lost_to" display_order="5" cde="61333" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137454">NO</clin_shared:lost_follow_up>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137455"/>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137456"/>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137458">Alive</clin_shared:vital_status>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137457"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">1373</clin_shared:days_to_last_followup>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137467"/>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137468"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137469"/>
<clin_shared:followup_treatment_success preferred_name="treatment_outcome_at_tcga_followup" display_order="45" cde="3104050" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137529">Stable Disease</clin_shared:followup_treatment_success>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137470">NO</nte:new_tumor_event_after_initial_treatment>
<nte:days_to_new_tumor_event_after_initial_treatment precision="day" xsd_ver="2.2" tier="1" cde="3392464" owner="TSS" procurement_status="Not Applicable" preferred_name="new_tumor_event_dx_days_to" display_order="85" cde_ver="1.000"/>
<nte:new_neoplasm_event_type preferred_name="new_tumor_event_type" display_order="81" cde="3119721" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137471"/>
<nte:new_neoplasm_event_occurrence_anatomic_site preferred_name="new_tumor_event_site" display_order="86" cde="3108271" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137480"/>
<nte:new_neoplasm_occurrence_anatomic_site_text preferred_name="new_tumor_event_site_other" display_order="87" cde="3128033" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137481"/>
<nte:additional_radiation_therapy preferred_name="new_tumor_event_radiation_tx" display_order="94" cde="3427615" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137527"/>
<nte:additional_pharmaceutical_therapy preferred_name="new_tumor_event_pharmaceutical_tx" display_order="95" cde="3427616" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137528"/>
<follow_up_v1.0:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<follow_up_v1.0:days_to_second_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414617" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_second" display_order="38" cde_ver="1.000"/>
<follow_up_v1.0:days_to_third_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414621" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_third" display_order="42" cde_ver="1.000"/>
<prad_shared:tumor_progression_post_ht preferred_name="progression_after_hormone_tx" display_order="88" cde="3158820" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137482"/>
<follow_up_v1.0:type_ofprogression_of_disease_ht preferred_name="progression_after_hormone_tx_type" display_order="89" cde="3354944" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137483"/>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">31</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2015</clin_shared:year_of_form_completion>
</follow_up_v1.0:follow_up>
</prad:follow_ups>
</prad:patient>
</prad:tcga_bcr>
|
<?xml version="1.0" encoding="UTF-8"?>
<prad:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/clinical/prad/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/clinical/prad/2.7/TCGA_BCR.PRAD_Clinical.xsd" schemaVersion="2.7" xmlns:prad="http://tcga.nci/bcr/xml/clinical/prad/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:clin_shared="http://tcga.nci/bcr/xml/clinical/shared/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:shared_stage="http://tcga.nci/bcr/xml/clinical/shared/stage/2.7" xmlns:prad_nte="http://tcga.nci/bcr/xml/clinical/prad/shared/new_tumor_event/2.7/1.0" xmlns:nte="http://tcga.nci/bcr/xml/clinical/shared/new_tumor_event/2.7" xmlns:rx="http://tcga.nci/bcr/xml/clinical/pharmaceutical/2.7" xmlns:rad="http://tcga.nci/bcr/xml/clinical/radiation/2.7" xmlns:follow_up_v1.0="http://tcga.nci/bcr/xml/clinical/prad/followup/2.7/1.0" xmlns:prad_shared="http://tcga.nci/bcr/xml/clinical/prad/shared/2.7">
<admin:admin>
<admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
<admin:file_uuid xsd_ver="2.6">456E0D8B-3028-41AC-B751-075FA99E7A91</admin:file_uuid>
<admin:batch_number xsd_ver="1.17">389.51.0</admin:batch_number>
<admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
<admin:disease_code xsd_ver="2.6">PRAD</admin:disease_code>
<admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
<admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
<admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
<admin:patient_withdrawal>
<admin:withdrawn>false</admin:withdrawn>
</admin:patient_withdrawal>
<admin:program xsi:nil="true" xsd_ver="2.7"/>
<admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
</admin:admin>
<prad:patient>
<admin:additional_studies/>
<clin_shared:tumor_tissue_site preferred_name="submitted_tumor_site" display_order="9999" cde="3427536" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517250">Prostate</clin_shared:tumor_tissue_site>
<shared:other_dx preferred_name="history_other_malignancy" display_order="21" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517267">No</shared:other_dx>
<shared:gender preferred_name="gender" display_order="14" cde="2200604" cde_ver="3.000" xsd_ver="1.8" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517260">MALE</shared:gender>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517305">Alive</clin_shared:vital_status>
<clin_shared:days_to_birth precision="day" xsd_ver="1.12" tier="1" cde="3008233" owner="TSS" procurement_status="Completed" preferred_name="birth_days_to" display_order="20" cde_ver="1.000">-19065</clin_shared:days_to_birth>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">671</clin_shared:days_to_last_followup>
<clin_shared:race_list>
<clin_shared:race preferred_name="race" display_order="96" cde="2192199" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Unknown" restricted="false" source_system_identifier="4216771"/>
</clin_shared:race_list>
<shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VV</shared:bcr_patient_barcode>
<shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">2A</shared:tissue_source_site>
<shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A8VV</shared:patient_id>
<shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">75A7AFB5-66D5-47E3-8A8A-3E3A1E749A96</shared:bcr_patient_uuid>
<shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="22" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517268">No</shared:history_of_neoadjuvant_treatment>
<clin_shared:informed_consent_verified preferred_name="patient_consent_status" display_order="82" cde="3288361" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false">YES</clin_shared:informed_consent_verified>
<clin_shared:icd_o_3_site preferred_name="" display_order="9999" cde="3226281" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61.9</clin_shared:icd_o_3_site>
<clin_shared:icd_o_3_histology preferred_name="" display_order="9999" cde="3226275" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">8140/3</clin_shared:icd_o_3_histology>
<clin_shared:icd_10 preferred_name="" display_order="9999" cde="3226287" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61</clin_shared:icd_10>
<clin_shared:tissue_prospective_collection_indicator preferred_name="prospective_collection" display_order="15" cde="3088492" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517261">NO</clin_shared:tissue_prospective_collection_indicator>
<clin_shared:tissue_retrospective_collection_indicator preferred_name="retrospective_collection" display_order="16" cde="3088528" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517262">YES</clin_shared:tissue_retrospective_collection_indicator>
<clin_shared:days_to_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="3131740" owner="TSS" procurement_status="Completed" preferred_name="initial_pathologic_dx_days_to" display_order="9999" cde_ver="1.000">0</clin_shared:days_to_initial_pathologic_diagnosis>
<clin_shared:age_at_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="2006657" owner="TSS" procurement_status="Completed">52</clin_shared:age_at_initial_pathologic_diagnosis>
<clin_shared:year_of_initial_pathologic_diagnosis preferred_name="initial_pathologic_dx_year" display_order="25" cde="2896960" cde_ver="1.000" xsd_ver="1.12" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517271">2010</clin_shared:year_of_initial_pathologic_diagnosis>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517316">TUMOR FREE</clin_shared:person_neoplasm_cancer_status>
<clin_shared:ethnicity preferred_name="ethnicity" display_order="97" cde="2192217" cde_ver="2.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4216166">NOT HISPANIC OR LATINO</clin_shared:ethnicity>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">29</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2014</clin_shared:year_of_form_completion>
<shared:histological_type preferred_name="histologic_diagnosis" display_order="5" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517251">Prostate Adenocarcinoma Acinar Type</shared:histological_type>
<shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="6" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="3517252" xsi:nil="true"/>
<prad:zone_of_origin preferred_name="zone_of_origin" display_order="7" cde="65104" cde_ver="3.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517253">Peripheral Zone</prad:zone_of_origin>
<clin_shared:laterality preferred_name="laterality" display_order="12" cde="827" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517258">Right</clin_shared:laterality>
<prad:tumor_levels>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517259">Apex</prad:tumor_level>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517259">Middle</prad:tumor_level>
</prad:tumor_levels>
<clin_shared:initial_pathologic_diagnosis_method preferred_name="method_initial_path_dx" display_order="9999" cde="2757941" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517272">Core needle biopsy</clin_shared:initial_pathologic_diagnosis_method>
<prad:days_to_bone_scan_performed precision="day" xsd_ver="2.4" tier="2" cde="3412936" owner="TSS" procurement_status="Completed" preferred_name="days_to_bone_scan" display_order="34" cde_ver="1.000">167</prad:days_to_bone_scan_performed>
<prad:bone_scan_results preferred_name="bone_scan_results" display_order="35" cde="3351888" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517281">Equivocal</prad:bone_scan_results>
<prad:diagnostic_ct_abd_pelvis_performed preferred_name="ct_scan_ab_pelvis_indicator" display_order="36" cde="3194099" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517282">YES</prad:diagnostic_ct_abd_pelvis_performed>
<prad:days_to_diagnostic_computed_tomography_performed precision="day" xsd_ver="2.4" tier="2" cde="3414503" owner="TSS" procurement_status="Completed" preferred_name="days_to_ct_scan_ab_pelvis" display_order="40" cde_ver="1.000">29</prad:days_to_diagnostic_computed_tomography_performed>
<prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_ct_abd_pelvis_result preferred_name="ct_scan_ab_pelvis_results" display_order="41" cde="3351890" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517287">No Evidence of Extraprostatic Extension</prad:diagnostic_ct_abd_pelvis_result>
</prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_mri_performed preferred_name="" display_order="9999" cde="3607491" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517288">YES</prad:diagnostic_mri_performed>
<prad:days_to_diagnostic_mri_performed precision="day" xsd_ver="2.4" tier="2" cde="3414554" owner="TSS" procurement_status="Completed" preferred_name="days_to_mri" display_order="46" cde_ver="1.000">204</prad:days_to_diagnostic_mri_performed>
<prad:diagnostic_mri_results>
<prad:diagnostic_mri_result preferred_name="mri_results" display_order="47" cde="3351891" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517293">No Evidence of Extraprostatic Extension</prad:diagnostic_mri_result>
</prad:diagnostic_mri_results>
<prad:lymphnodes_examined preferred_name="lymph_nodes_examined" display_order="54" cde="2200396" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517300">YES</prad:lymphnodes_examined>
<prad:number_of_lymphnodes_examined preferred_name="lymph_nodes_examined_count" display_order="56" cde="3" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517302">16</prad:number_of_lymphnodes_examined>
<prad:number_of_lymphnodes_positive_by_he preferred_name="lymph_nodes_examined_he_count" display_order="57" cde="3086388" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517303">0</prad:number_of_lymphnodes_positive_by_he>
<clin_shared:residual_tumor preferred_name="residual_tumor" display_order="58" cde="2608702" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517304">R0</clin_shared:residual_tumor>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517314"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517315"/>
<shared_stage:stage_event system="AJCC">
<shared_stage:system_version preferred_name="ajcc_staging_edition" display_order="36" cde="2722309" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_stage preferred_name="ajcc_clinical_tumor_stage" display_order="9999" cde="3440332" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:pathologic_stage preferred_name="ajcc_pathologic_tumor_stage" display_order="40" cde="3203222" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:tnm_categories>
<shared_stage:clinical_categories>
<shared_stage:clinical_T preferred_name="ajcc_tumor_clinical_ct" display_order="9999" cde="3440328" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517274">T2b</shared_stage:clinical_T>
<shared_stage:clinical_N preferred_name="ajcc_nodes_clinical_cn" display_order="9999" cde="3440330" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_M preferred_name="ajcc_metastasis_clinical_cm" display_order="9999" cde="3440331" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517294">M0</shared_stage:clinical_M>
</shared_stage:clinical_categories>
<shared_stage:pathologic_categories>
<shared_stage:pathologic_T preferred_name="ajcc_tumor_pathologic_pt" display_order="37" cde="3045435" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517296">T2b</shared_stage:pathologic_T>
<shared_stage:pathologic_N preferred_name="ajcc_nodes_pathologic_pn" display_order="38" cde="3203106" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517301">N0</shared_stage:pathologic_N>
<shared_stage:pathologic_M preferred_name="ajcc_metastasis_pathologic_pm" display_order="39" cde="3045439" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:pathologic_categories>
</shared_stage:tnm_categories>
<shared_stage:psa>
<shared_stage:psa_value preferred_name="psa_most_recent_results" display_order="75" cde="3351903" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517321">0.05</shared_stage:psa_value>
<shared_stage:days_to_psa precision="day" xsd_ver="2.6" tier="2" cde="3414608" owner="TSS" procurement_status="Completed" preferred_name="days_to_psa_most_recent" display_order="74" cde_ver="1.000">560</shared_stage:days_to_psa>
</shared_stage:psa>
<shared_stage:gleason_grading>
<shared_stage:gleason_score preferred_name="gleason_score" display_order="10" cde="2534619" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517256">6</shared_stage:gleason_score>
<shared_stage:primary_pattern preferred_name="gleason_pattern_primary" display_order="8" cde="2534617" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517254">3</shared_stage:primary_pattern>
<shared_stage:secondary_pattern preferred_name="gleason_pattern_secondary" display_order="9" cde="2534618" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517255">3</shared_stage:secondary_pattern>
<shared_stage:tertiary_pattern preferred_name="gleason_pattern_tertiary" display_order="11" cde="2783875" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517257">4</shared_stage:tertiary_pattern>
</shared_stage:gleason_grading>
<shared_stage:ann_arbor>
<shared_stage:b_symptoms preferred_name="b_symptoms_present_indicator" display_order="9999" cde="2902402" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:extranodal_involvement preferred_name="extranodal_lymphomatous_involvement" display_order="9999" cde="3364582" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:ann_arbor>
<shared_stage:serum_markers preferred_name="" display_order="9999" cde="3901772" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:igcccg_stage preferred_name="" display_order="9999" cde="3901822" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:masaoka_stage preferred_name="" display_order="9999" cde="3952848" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:stage_event>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517324">NO</clin_shared:postoperative_rx_tx>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517323">NO</clin_shared:radiation_therapy>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517325"/>
<prad:biochemical_recurrence preferred_name="biochemical_recurrence_indicator" display_order="76" cde="3351904" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517322">NO</prad:biochemical_recurrence>
<prad:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<prad_nte:new_tumor_events>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517326">NO</nte:new_tumor_event_after_initial_treatment>
</prad_nte:new_tumor_events>
<rx:drugs/>
<rad:radiations/>
<prad:follow_ups>
<follow_up_v1.0:follow_up version="1.0" sequence="1">
<clin_shared:bcr_followup_barcode preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VV-F71800</clin_shared:bcr_followup_barcode>
<clin_shared:bcr_followup_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">FC901101-A4AB-466A-BBE9-8ADC403ECF47</clin_shared:bcr_followup_uuid>
<clin_shared:followup_case_report_form_submission_reason preferred_name="followup_reason" display_order="4" cde="3233305" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137533">Scheduled Follow-up Submission</clin_shared:followup_case_report_form_submission_reason>
<clin_shared:lost_follow_up preferred_name="followup_lost_to" display_order="5" cde="61333" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137534">NO</clin_shared:lost_follow_up>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137535"/>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137536"/>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137538">Alive</clin_shared:vital_status>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137537"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">671</clin_shared:days_to_last_followup>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137547"/>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137548"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137549"/>
<clin_shared:followup_treatment_success preferred_name="treatment_outcome_at_tcga_followup" display_order="45" cde="3104050" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137574">Complete Remission/Response</clin_shared:followup_treatment_success>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137550">NO</nte:new_tumor_event_after_initial_treatment>
<nte:days_to_new_tumor_event_after_initial_treatment precision="day" xsd_ver="2.2" tier="1" cde="3392464" owner="TSS" procurement_status="Not Applicable" preferred_name="new_tumor_event_dx_days_to" display_order="85" cde_ver="1.000"/>
<nte:new_neoplasm_event_type preferred_name="new_tumor_event_type" display_order="81" cde="3119721" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137551"/>
<nte:new_neoplasm_event_occurrence_anatomic_site preferred_name="new_tumor_event_site" display_order="86" cde="3108271" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137560"/>
<nte:new_neoplasm_occurrence_anatomic_site_text preferred_name="new_tumor_event_site_other" display_order="87" cde="3128033" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137561"/>
<nte:additional_radiation_therapy preferred_name="new_tumor_event_radiation_tx" display_order="94" cde="3427615" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137572"/>
<nte:additional_pharmaceutical_therapy preferred_name="new_tumor_event_pharmaceutical_tx" display_order="95" cde="3427616" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137573"/>
<follow_up_v1.0:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<follow_up_v1.0:days_to_second_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414617" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_second" display_order="38" cde_ver="1.000"/>
<follow_up_v1.0:days_to_third_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414621" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_third" display_order="42" cde_ver="1.000"/>
<prad_shared:tumor_progression_post_ht preferred_name="progression_after_hormone_tx" display_order="88" cde="3158820" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137562"/>
<follow_up_v1.0:type_ofprogression_of_disease_ht preferred_name="progression_after_hormone_tx_type" display_order="89" cde="3354944" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137563"/>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">31</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2015</clin_shared:year_of_form_completion>
</follow_up_v1.0:follow_up>
</prad:follow_ups>
</prad:patient>
</prad:tcga_bcr>
|
<?xml version="1.0" encoding="UTF-8"?>
<prad:tcga_bcr xsi:schemaLocation="http://tcga.nci/bcr/xml/clinical/prad/2.7 https://raw.githubusercontent.com/nchbcr/xsd/2.7/tcga.nci/bcr/xml/clinical/prad/2.7/TCGA_BCR.PRAD_Clinical.xsd" schemaVersion="2.7" xmlns:prad="http://tcga.nci/bcr/xml/clinical/prad/2.7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:admin="http://tcga.nci/bcr/xml/administration/2.7" xmlns:clin_shared="http://tcga.nci/bcr/xml/clinical/shared/2.7" xmlns:shared="http://tcga.nci/bcr/xml/shared/2.7" xmlns:shared_stage="http://tcga.nci/bcr/xml/clinical/shared/stage/2.7" xmlns:prad_nte="http://tcga.nci/bcr/xml/clinical/prad/shared/new_tumor_event/2.7/1.0" xmlns:nte="http://tcga.nci/bcr/xml/clinical/shared/new_tumor_event/2.7" xmlns:rx="http://tcga.nci/bcr/xml/clinical/pharmaceutical/2.7" xmlns:rad="http://tcga.nci/bcr/xml/clinical/radiation/2.7" xmlns:follow_up_v1.0="http://tcga.nci/bcr/xml/clinical/prad/followup/2.7/1.0" xmlns:prad_shared="http://tcga.nci/bcr/xml/clinical/prad/shared/2.7">
<admin:admin>
<admin:bcr xsd_ver="1.17">Nationwide Children's Hospital</admin:bcr>
<admin:file_uuid xsd_ver="2.6">04172A7C-2055-4D30-A222-7DBF32487EB6</admin:file_uuid>
<admin:batch_number xsd_ver="1.17">389.51.0</admin:batch_number>
<admin:project_code xsd_ver="2.7">TCGA</admin:project_code>
<admin:disease_code xsd_ver="2.6">PRAD</admin:disease_code>
<admin:day_of_dcc_upload xsd_ver="1.17">22</admin:day_of_dcc_upload>
<admin:month_of_dcc_upload xsd_ver="1.17">12</admin:month_of_dcc_upload>
<admin:year_of_dcc_upload xsd_ver="1.17">2016</admin:year_of_dcc_upload>
<admin:patient_withdrawal>
<admin:withdrawn>false</admin:withdrawn>
</admin:patient_withdrawal>
<admin:program xsi:nil="true" xsd_ver="2.7"/>
<admin:dbgap_registration_code xsi:nil="true" xsd_ver="2.7"/>
</admin:admin>
<prad:patient>
<admin:additional_studies/>
<clin_shared:tumor_tissue_site preferred_name="submitted_tumor_site" display_order="9999" cde="3427536" cde_ver="2.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517440">Prostate</clin_shared:tumor_tissue_site>
<shared:other_dx preferred_name="history_other_malignancy" display_order="21" cde="3382736" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517457">No</shared:other_dx>
<shared:gender preferred_name="gender" display_order="14" cde="2200604" cde_ver="3.000" xsd_ver="1.8" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517450">MALE</shared:gender>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517495">Alive</clin_shared:vital_status>
<clin_shared:days_to_birth precision="day" xsd_ver="1.12" tier="1" cde="3008233" owner="TSS" procurement_status="Completed" preferred_name="birth_days_to" display_order="20" cde_ver="1.000">-25904</clin_shared:days_to_birth>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">1033</clin_shared:days_to_last_followup>
<clin_shared:race_list>
<clin_shared:race preferred_name="race" display_order="96" cde="2192199" cde_ver="1.000" xsd_ver="1.8" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4216403">WHITE</clin_shared:race>
</clin_shared:race_list>
<shared:bcr_patient_barcode preferred_name="" display_order="9999" cde="2003301" cde_ver="" xsd_ver="1.8" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VX</shared:bcr_patient_barcode>
<shared:tissue_source_site cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">2A</shared:tissue_source_site>
<shared:patient_id cde="" cde_ver="" xsd_ver="2.4" owner="TSS" procurement_status="Completed" restricted="false">A8VX</shared:patient_id>
<shared:bcr_patient_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.3" owner="TSS" procurement_status="Completed" restricted="false">942F1788-D977-4AC0-A177-659F9D4CD077</shared:bcr_patient_uuid>
<shared:history_of_neoadjuvant_treatment preferred_name="history_neoadjuvant_treatment" display_order="22" cde="3382737" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517458">No</shared:history_of_neoadjuvant_treatment>
<clin_shared:informed_consent_verified preferred_name="patient_consent_status" display_order="82" cde="3288361" cde_ver="1.000" xsd_ver="2.4" tier="1" owner="TSS" procurement_status="Completed" restricted="false">YES</clin_shared:informed_consent_verified>
<clin_shared:icd_o_3_site preferred_name="" display_order="9999" cde="3226281" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61.9</clin_shared:icd_o_3_site>
<clin_shared:icd_o_3_histology preferred_name="" display_order="9999" cde="3226275" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">8140/3</clin_shared:icd_o_3_histology>
<clin_shared:icd_10 preferred_name="" display_order="9999" cde="3226287" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false">C61</clin_shared:icd_10>
<clin_shared:tissue_prospective_collection_indicator preferred_name="prospective_collection" display_order="15" cde="3088492" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517451">NO</clin_shared:tissue_prospective_collection_indicator>
<clin_shared:tissue_retrospective_collection_indicator preferred_name="retrospective_collection" display_order="16" cde="3088528" cde_ver="1.000" xsd_ver="2.3" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517452">YES</clin_shared:tissue_retrospective_collection_indicator>
<clin_shared:days_to_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="3131740" owner="TSS" procurement_status="Completed" preferred_name="initial_pathologic_dx_days_to" display_order="9999" cde_ver="1.000">0</clin_shared:days_to_initial_pathologic_diagnosis>
<clin_shared:age_at_initial_pathologic_diagnosis precision="day" xsd_ver="1.12" tier="1" cde="2006657" owner="TSS" procurement_status="Completed">70</clin_shared:age_at_initial_pathologic_diagnosis>
<clin_shared:year_of_initial_pathologic_diagnosis preferred_name="initial_pathologic_dx_year" display_order="25" cde="2896960" cde_ver="1.000" xsd_ver="1.12" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517461">2011</clin_shared:year_of_initial_pathologic_diagnosis>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517506">TUMOR FREE</clin_shared:person_neoplasm_cancer_status>
<clin_shared:ethnicity preferred_name="ethnicity" display_order="97" cde="2192217" cde_ver="2.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4217187">NOT HISPANIC OR LATINO</clin_shared:ethnicity>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">29</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2014</clin_shared:year_of_form_completion>
<shared:histological_type preferred_name="histologic_diagnosis" display_order="5" cde="3081934" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517441">Prostate Adenocarcinoma Acinar Type</shared:histological_type>
<shared:histological_type_other preferred_name="histologic_diagnosis_other" display_order="6" cde="3124492" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Not Applicable" restricted="false" source_system_identifier="3517442" xsi:nil="true"/>
<prad:zone_of_origin preferred_name="zone_of_origin" display_order="7" cde="65104" cde_ver="3.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517443">Peripheral Zone</prad:zone_of_origin>
<clin_shared:laterality preferred_name="laterality" display_order="12" cde="827" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517448">Bilateral</clin_shared:laterality>
<prad:tumor_levels>
<prad:tumor_level preferred_name="tumor_level" display_order="13" cde="3348845" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517449">Middle</prad:tumor_level>
</prad:tumor_levels>
<clin_shared:initial_pathologic_diagnosis_method preferred_name="method_initial_path_dx" display_order="9999" cde="2757941" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517462">Core needle biopsy</clin_shared:initial_pathologic_diagnosis_method>
<prad:days_to_bone_scan_performed precision="day" xsd_ver="2.4" tier="2" cde="3412936" owner="TSS" procurement_status="Completed" preferred_name="days_to_bone_scan" display_order="34" cde_ver="1.000">32</prad:days_to_bone_scan_performed>
<prad:bone_scan_results preferred_name="bone_scan_results" display_order="35" cde="3351888" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517471">Normal (no evidence of prostate cancer) [cM0]</prad:bone_scan_results>
<prad:diagnostic_ct_abd_pelvis_performed preferred_name="ct_scan_ab_pelvis_indicator" display_order="36" cde="3194099" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517472">YES</prad:diagnostic_ct_abd_pelvis_performed>
<prad:days_to_diagnostic_computed_tomography_performed precision="day" xsd_ver="2.4" tier="2" cde="3414503" owner="TSS" procurement_status="Completed" preferred_name="days_to_ct_scan_ab_pelvis" display_order="40" cde_ver="1.000">32</prad:days_to_diagnostic_computed_tomography_performed>
<prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_ct_abd_pelvis_result preferred_name="ct_scan_ab_pelvis_results" display_order="41" cde="3351890" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517477">Extraprostatic Extension Localized (e.g. seminal vesicles)</prad:diagnostic_ct_abd_pelvis_result>
</prad:diagnostic_ct_abd_pelvis_results>
<prad:diagnostic_mri_performed preferred_name="" display_order="9999" cde="3607491" cde_ver="" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517478">YES</prad:diagnostic_mri_performed>
<prad:days_to_diagnostic_mri_performed precision="day" xsd_ver="2.4" tier="2" cde="3414554" owner="TSS" procurement_status="Completed" preferred_name="days_to_mri" display_order="46" cde_ver="1.000">89</prad:days_to_diagnostic_mri_performed>
<prad:diagnostic_mri_results>
<prad:diagnostic_mri_result preferred_name="mri_results" display_order="47" cde="3351891" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517483">Extraprostatic Extension Localized (e.g. seminal vesicles)</prad:diagnostic_mri_result>
</prad:diagnostic_mri_results>
<prad:lymphnodes_examined preferred_name="lymph_nodes_examined" display_order="54" cde="2200396" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517490">YES</prad:lymphnodes_examined>
<prad:number_of_lymphnodes_examined preferred_name="lymph_nodes_examined_count" display_order="56" cde="3" cde_ver="3.000" xsd_ver="2.1" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517492">16</prad:number_of_lymphnodes_examined>
<prad:number_of_lymphnodes_positive_by_he preferred_name="lymph_nodes_examined_he_count" display_order="57" cde="3086388" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517493">0</prad:number_of_lymphnodes_positive_by_he>
<clin_shared:residual_tumor preferred_name="residual_tumor" display_order="58" cde="2608702" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517494">R0</clin_shared:residual_tumor>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517504"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517505"/>
<shared_stage:stage_event system="AJCC">
<shared_stage:system_version preferred_name="ajcc_staging_edition" display_order="36" cde="2722309" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_stage preferred_name="ajcc_clinical_tumor_stage" display_order="9999" cde="3440332" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:pathologic_stage preferred_name="ajcc_pathologic_tumor_stage" display_order="40" cde="3203222" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:tnm_categories>
<shared_stage:clinical_categories>
<shared_stage:clinical_T preferred_name="ajcc_tumor_clinical_ct" display_order="9999" cde="3440328" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517464">T2c</shared_stage:clinical_T>
<shared_stage:clinical_N preferred_name="ajcc_nodes_clinical_cn" display_order="9999" cde="3440330" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:clinical_M preferred_name="ajcc_metastasis_clinical_cm" display_order="9999" cde="3440331" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517484">M0</shared_stage:clinical_M>
</shared_stage:clinical_categories>
<shared_stage:pathologic_categories>
<shared_stage:pathologic_T preferred_name="ajcc_tumor_pathologic_pt" display_order="37" cde="3045435" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517488">T3b</shared_stage:pathologic_T>
<shared_stage:pathologic_N preferred_name="ajcc_nodes_pathologic_pn" display_order="38" cde="3203106" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517491">N0</shared_stage:pathologic_N>
<shared_stage:pathologic_M preferred_name="ajcc_metastasis_pathologic_pm" display_order="39" cde="3045439" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:pathologic_categories>
</shared_stage:tnm_categories>
<shared_stage:psa>
<shared_stage:psa_value preferred_name="psa_most_recent_results" display_order="75" cde="3351903" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517511">0.05</shared_stage:psa_value>
<shared_stage:days_to_psa precision="day" xsd_ver="2.6" tier="2" cde="3414608" owner="TSS" procurement_status="Completed" preferred_name="days_to_psa_most_recent" display_order="74" cde_ver="1.000">1033</shared_stage:days_to_psa>
</shared_stage:psa>
<shared_stage:gleason_grading>
<shared_stage:gleason_score preferred_name="gleason_score" display_order="10" cde="2534619" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517446">8</shared_stage:gleason_score>
<shared_stage:primary_pattern preferred_name="gleason_pattern_primary" display_order="8" cde="2534617" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517444">4</shared_stage:primary_pattern>
<shared_stage:secondary_pattern preferred_name="gleason_pattern_secondary" display_order="9" cde="2534618" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517445">4</shared_stage:secondary_pattern>
<shared_stage:tertiary_pattern preferred_name="gleason_pattern_tertiary" display_order="11" cde="2783875" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517447"/>
</shared_stage:gleason_grading>
<shared_stage:ann_arbor>
<shared_stage:b_symptoms preferred_name="b_symptoms_present_indicator" display_order="9999" cde="2902402" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:extranodal_involvement preferred_name="extranodal_lymphomatous_involvement" display_order="9999" cde="3364582" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:ann_arbor>
<shared_stage:serum_markers preferred_name="" display_order="9999" cde="3901772" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:igcccg_stage preferred_name="" display_order="9999" cde="3901822" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
<shared_stage:masaoka_stage preferred_name="" display_order="9999" cde="3952848" cde_ver="" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Applicable" restricted="false"/>
</shared_stage:stage_event>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517514">NO</clin_shared:postoperative_rx_tx>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517513">NO</clin_shared:radiation_therapy>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="3517515"/>
<prad:biochemical_recurrence preferred_name="biochemical_recurrence_indicator" display_order="76" cde="3351904" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517512">NO</prad:biochemical_recurrence>
<prad:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<prad_nte:new_tumor_events>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="3517516">NO</nte:new_tumor_event_after_initial_treatment>
</prad_nte:new_tumor_events>
<rx:drugs/>
<rad:radiations/>
<prad:follow_ups>
<follow_up_v1.0:follow_up version="1.0" sequence="1">
<clin_shared:bcr_followup_barcode preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">TCGA-2A-A8VX-F71804</clin_shared:bcr_followup_barcode>
<clin_shared:bcr_followup_uuid preferred_name="" display_order="9999" cde="" cde_ver="" xsd_ver="2.5" owner="TSS" procurement_status="Completed" restricted="false">24877403-12D1-40B7-8F7F-67714B8EAC8A</clin_shared:bcr_followup_uuid>
<clin_shared:followup_case_report_form_submission_reason preferred_name="followup_reason" display_order="4" cde="3233305" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137672">Scheduled Follow-up Submission</clin_shared:followup_case_report_form_submission_reason>
<clin_shared:lost_follow_up preferred_name="followup_lost_to" display_order="5" cde="61333" cde_ver="3.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137673">NO</clin_shared:lost_follow_up>
<clin_shared:radiation_therapy preferred_name="radiation_treatment_adjuvant" display_order="77" cde="2005312" cde_ver="4.000" xsd_ver="1.9" tier="1" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137674"/>
<clin_shared:postoperative_rx_tx preferred_name="pharmaceutical_tx_adjuvant" display_order="78" cde="3397567" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137675"/>
<clin_shared:vital_status preferred_name="vital_status" display_order="59" cde="5" cde_ver="5.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137677">Alive</clin_shared:vital_status>
<clin_shared:primary_therapy_outcome_success preferred_name="treatment_outcome_first_course" display_order="79" cde="2786727" cde_ver="3.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137676"/>
<clin_shared:days_to_last_followup precision="day" xsd_ver="1.12" tier="1" cde="3008273" owner="TSS" procurement_status="Completed" preferred_name="last_contact_days_to" display_order="63" cde_ver="1.000">1378</clin_shared:days_to_last_followup>
<clin_shared:days_to_death precision="day" xsd_ver="1.12" tier="1" cde="3165475" owner="TSS" procurement_status="Not Applicable" preferred_name="death_days_to" display_order="67" cde_ver="1.000"/>
<clin_shared:person_neoplasm_cancer_status preferred_name="tumor_status" display_order="70" cde="2759550" cde_ver="1.000" xsd_ver="1.9" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137686"/>
<clin_shared:patient_death_reason preferred_name="cause_of_death" display_order="68" cde="2554674" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137687"/>
<clin_shared:source_of_patient_death_reason preferred_name="cause_of_death_source" display_order="69" cde="2390921" cde_ver="1.000" xsd_ver="2.4" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137688"/>
<clin_shared:followup_treatment_success preferred_name="treatment_outcome_at_tcga_followup" display_order="45" cde="3104050" cde_ver="2.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137713">Complete Remission/Response</clin_shared:followup_treatment_success>
<nte:new_tumor_event_after_initial_treatment preferred_name="new_tumor_event_dx_indicator" display_order="80" cde="3121376" cde_ver="1.000" xsd_ver="2.5" tier="1" owner="TSS" procurement_status="Completed" restricted="false" source_system_identifier="4137689">NO</nte:new_tumor_event_after_initial_treatment>
<nte:days_to_new_tumor_event_after_initial_treatment precision="day" xsd_ver="2.2" tier="1" cde="3392464" owner="TSS" procurement_status="Not Applicable" preferred_name="new_tumor_event_dx_days_to" display_order="85" cde_ver="1.000"/>
<nte:new_neoplasm_event_type preferred_name="new_tumor_event_type" display_order="81" cde="3119721" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137690"/>
<nte:new_neoplasm_event_occurrence_anatomic_site preferred_name="new_tumor_event_site" display_order="86" cde="3108271" cde_ver="2.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137699"/>
<nte:new_neoplasm_occurrence_anatomic_site_text preferred_name="new_tumor_event_site_other" display_order="87" cde="3128033" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137700"/>
<nte:additional_radiation_therapy preferred_name="new_tumor_event_radiation_tx" display_order="94" cde="3427615" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137711"/>
<nte:additional_pharmaceutical_therapy preferred_name="new_tumor_event_pharmaceutical_tx" display_order="95" cde="3427616" cde_ver="1.000" xsd_ver="2.5" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137712"/>
<follow_up_v1.0:days_to_first_biochemical_recurrence precision="day" xsd_ver="2.4" tier="2" cde="3414609" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_first" display_order="93" cde_ver="1.000"/>
<follow_up_v1.0:days_to_second_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414617" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_second" display_order="38" cde_ver="1.000"/>
<follow_up_v1.0:days_to_third_biochemical_recurrence precision="day" xsd_ver="2.5" tier="2" cde="3414621" owner="TSS" procurement_status="Not Available" preferred_name="days_to_biochemical_recurrence_third" display_order="42" cde_ver="1.000"/>
<prad_shared:tumor_progression_post_ht preferred_name="progression_after_hormone_tx" display_order="88" cde="3158820" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137701"/>
<follow_up_v1.0:type_ofprogression_of_disease_ht preferred_name="progression_after_hormone_tx_type" display_order="89" cde="3354944" cde_ver="1.000" xsd_ver="2.6" tier="2" owner="TSS" procurement_status="Not Available" restricted="false" source_system_identifier="4137702"/>
<clin_shared:day_of_form_completion preferred_name="form_completion_day" display_order="999" cde="2975716" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">31</clin_shared:day_of_form_completion>
<clin_shared:month_of_form_completion preferred_name="form_completion_month" display_order="999" cde="2975718" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">3</clin_shared:month_of_form_completion>
<clin_shared:year_of_form_completion preferred_name="form_completion_year" display_order="999" cde="2975720" cde_ver="1.000" xsd_ver="2.2" tier="2" owner="TSS" procurement_status="Completed" restricted="false">2015</clin_shared:year_of_form_completion>
</follow_up_v1.0:follow_up>
</prad:follow_ups>
</prad:patient>
</prad:tcga_bcr>
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"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<prad:tcga_bcr xsi:schemaLocation=\"http://tcga.nci/bcr(...TRUNCATED)
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"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<prad:tcga_bcr xsi:schemaLocation=\"http://tcga.nci/bcr(...TRUNCATED)
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"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<prad:tcga_bcr xsi:schemaLocation=\"http://tcga.nci/bcr(...TRUNCATED)
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"<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<prad:tcga_bcr xsi:schemaLocation=\"http://tcga.nci/bcr(...TRUNCATED)
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TCGA-PRAD Biochemical Recurrence Dataset
This dataset was curated as part of a research project aimed at predicting biochemical recurrence (BCR) in prostate cancer directly from H&E-stained prostatectomy specimens.
Based on the TCGA Prostate Adenocarcinoma (TCGA-PRAD) cohort, we provides curated labels for biochemical recurrence along with packed diagnostic whole-slide images and corresponding tissue masks.
📂 Repository Structure
The dataset is organized into the following folders and files:
whole-slide-images/
- Packed WSIs for the 298 TCGA-PRAD patients included in our study in
.tifformat
tissue-masks/
- Corresponding binary tissue segmentation masks, also in
.tifformat (0 = background,1 = tissue)
biotab-xml/
- Original case-specific biotab XML files for 403 TCGA-PRAD patients with at least one diagnostic slide.
- Used for extracting BCR status and metadata.
metadata.csv
- metadata prased from biotab XML files for all the 403 TCGA-PRAD patients with diagnostic slides.
bcr.csv
- Curated biochemical recurrence labels for the 298 TCGA-PRAD patients included in our study
case_id: TCGA case IDevent:1if biochemical recurrence occurred,0otherwisefollow_up_y: Time to event (ifevent=1) or time to last follow-up (ifevent=0), in years
🧬 Label Curation Process
Biochemical recurrence labels were curated from the biotab XML files, based on the following logic:
Event = 1 (Biochemical Recurrence):
biochemical_recurrence_indicator = YES, usingdays_to_biochemical_recurrence_firstas time to event.- OR
new_tumor_event_type = "Biochemical evidence of disease"with availablenew_tumor_event_dx_days_to.
Event = 0 (No Recurrence):
biochemical_recurrence_indicator = NOand no tumor event indicating recurrence.- Time to last follow-up taken from
last_contact_days_to.
Patients with incomplete or contradictory information were excluded (105 patients).
🧾 Citation
If you use this dataset in your research, please cite:
to be added soon
🔒 License
This dataset is derived from TCGA, which is distributed under the TCGA Data Use Certification.
Redistribution of image data is permitted for academic and non-commercial research purposes only.
tags: - medical - histology - tcga size_categories: - n<1K
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