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waticlems commited on
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add tissue segmentation masks

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individual slide masks were generated using an in-house tissue segmentation model
the `pathology-whole-slide-packer` code then packs the individual slide tissue masks into a case-level mask corresponding to the packed slide

This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. .gitattributes +270 -0
  2. tissue-masks/TCGA-2A-A8VL.tif +3 -0
  3. tissue-masks/TCGA-2A-A8VO.tif +3 -0
  4. tissue-masks/TCGA-2A-A8VT.tif +3 -0
  5. tissue-masks/TCGA-2A-A8VV.tif +3 -0
  6. tissue-masks/TCGA-2A-A8VX.tif +3 -0
  7. tissue-masks/TCGA-2A-A8W1.tif +3 -0
  8. tissue-masks/TCGA-2A-A8W3.tif +3 -0
  9. tissue-masks/TCGA-2A-AAYF.tif +3 -0
  10. tissue-masks/TCGA-2A-AAYO.tif +3 -0
  11. tissue-masks/TCGA-2A-AAYU.tif +3 -0
  12. tissue-masks/TCGA-CH-5738.tif +0 -0
  13. tissue-masks/TCGA-CH-5739.tif +0 -0
  14. tissue-masks/TCGA-CH-5741.tif +3 -0
  15. tissue-masks/TCGA-CH-5746.tif +0 -0
  16. tissue-masks/TCGA-CH-5750.tif +3 -0
  17. tissue-masks/TCGA-CH-5752.tif +0 -0
  18. tissue-masks/TCGA-CH-5762.tif +3 -0
  19. tissue-masks/TCGA-CH-5763.tif +3 -0
  20. tissue-masks/TCGA-CH-5765.tif +0 -0
  21. tissue-masks/TCGA-CH-5767.tif +0 -0
  22. tissue-masks/TCGA-CH-5768.tif +0 -0
  23. tissue-masks/TCGA-EJ-5494.tif +3 -0
  24. tissue-masks/TCGA-EJ-5495.tif +3 -0
  25. tissue-masks/TCGA-EJ-5496.tif +3 -0
  26. tissue-masks/TCGA-EJ-5497.tif +3 -0
  27. tissue-masks/TCGA-EJ-5498.tif +3 -0
  28. tissue-masks/TCGA-EJ-5499.tif +3 -0
  29. tissue-masks/TCGA-EJ-5501.tif +3 -0
  30. tissue-masks/TCGA-EJ-5502.tif +3 -0
  31. tissue-masks/TCGA-EJ-5503.tif +3 -0
  32. tissue-masks/TCGA-EJ-5504.tif +3 -0
  33. tissue-masks/TCGA-EJ-5505.tif +3 -0
  34. tissue-masks/TCGA-EJ-5506.tif +3 -0
  35. tissue-masks/TCGA-EJ-5507.tif +3 -0
  36. tissue-masks/TCGA-EJ-5508.tif +3 -0
  37. tissue-masks/TCGA-EJ-5509.tif +3 -0
  38. tissue-masks/TCGA-EJ-5510.tif +3 -0
  39. tissue-masks/TCGA-EJ-5511.tif +3 -0
  40. tissue-masks/TCGA-EJ-5512.tif +3 -0
  41. tissue-masks/TCGA-EJ-5514.tif +3 -0
  42. tissue-masks/TCGA-EJ-5515.tif +3 -0
  43. tissue-masks/TCGA-EJ-5516.tif +3 -0
  44. tissue-masks/TCGA-EJ-5517.tif +3 -0
  45. tissue-masks/TCGA-EJ-5518.tif +3 -0
  46. tissue-masks/TCGA-EJ-5519.tif +3 -0
  47. tissue-masks/TCGA-EJ-5521.tif +3 -0
  48. tissue-masks/TCGA-EJ-5522.tif +3 -0
  49. tissue-masks/TCGA-EJ-5525.tif +3 -0
  50. tissue-masks/TCGA-EJ-5527.tif +3 -0
.gitattributes CHANGED
@@ -355,3 +355,273 @@ whole-slide-images/TCGA-YL-A9WK.tif filter=lfs diff=lfs merge=lfs -text
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  whole-slide-images/TCGA-YL-A9WL.tif filter=lfs diff=lfs merge=lfs -text
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  whole-slide-images/TCGA-YL-A9WX.tif filter=lfs diff=lfs merge=lfs -text
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  whole-slide-images/TCGA-YL-A9WY.tif filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  whole-slide-images/TCGA-YL-A9WL.tif filter=lfs diff=lfs merge=lfs -text
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  whole-slide-images/TCGA-YL-A9WX.tif filter=lfs diff=lfs merge=lfs -text
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  whole-slide-images/TCGA-YL-A9WY.tif filter=lfs diff=lfs merge=lfs -text
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+ tissue-masks/TCGA-2A-A8VL.tif filter=lfs diff=lfs merge=lfs -text
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+ tissue-masks/TCGA-2A-A8VO.tif filter=lfs diff=lfs merge=lfs -text
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+ tissue-masks/TCGA-2A-A8VT.tif filter=lfs diff=lfs merge=lfs -text
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+ tissue-masks/TCGA-EJ-5517.tif filter=lfs diff=lfs merge=lfs -text
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+ tissue-masks/TCGA-EJ-5519.tif filter=lfs diff=lfs merge=lfs -text
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