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2026-06-25 01:30:20 UTC
/autofs/projects-t3/lilab/yangqisu/repos/data_perturb_v2/copilot/plans/active/plans-20260624-perturb-data-lab-demo-docs
/autofs/projects-t3/lilab/yangqisu/.local/miniforge3/envs/py313_torch211/bin/python
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[ { "dataset_id": "marson_d2_rest", "output_file": "h5ad/demo_marson_d2_rest.h5ad", "source_path": "/autofs/projects-t3/lilab/yangqisu/repos/data_perturb_v2/perturb/marson2025_data/D2_Rest.assigned_guide.h5ad", "source_schema_path": "/autofs/projects-t3/lilab/yangqisu/repos/data_perturb_v2/tcell_corpu...

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Check out the documentation for more information.

perturb-data-lab demo subsets

Generated: 2026-06-25 01:30:20 UTC

This Phase 2 package contains two small real .h5ad demo subsets prepared from the full Marson and Xorion source datasets for the perturb-data-lab public-demo plan.

Included datasets

Dataset Cells Features H5AD Reviewed schema copy Notes
marson_d2_rest 2720 18130 h5ad/demo_marson_d2_rest.h5ad schemas/marson_d2_rest.final-schema.yaml schema_decisions/marson_d2_rest.md
xorion_hct116_dual_guide 2720 38606 h5ad/demo_xorion_hct116_dual_guide.h5ad schemas/xorion_hct116_dual_guide.final-schema.yaml schema_decisions/xorion_hct116_dual_guide.md

Sampling rule

  • Random seed: 20260624
  • Treated labels per dataset: top 24 labels by source cell count
  • Target cells per treated label: 80
  • Control cells per dataset: 800
  • Native feature axes were preserved in full for both datasets.

Provenance files

  • provenance/phase2_subset_manifest.json
  • checksums.txt
  • demo_inputs.csv

Phase boundary

  • The reviewed schema copies are included for packaging, but demo-specific schema adaptation and canonicalization validation remain Phase 3 work.
  • If HuggingFace upload is blocked, this folder is the ready-to-upload local package.
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