npz
dict | __key__
string | __url__
string |
|---|---|---|
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{"x":[[[0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,(...TRUNCATED)
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{"x":[[[0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,(...TRUNCATED)
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{"x":[[[0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,(...TRUNCATED)
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{"x":[[[0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,(...TRUNCATED)
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{"x":[[[0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,(...TRUNCATED)
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{"x":[[[0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,(...TRUNCATED)
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|
Two datasets, namely diet_conditions_20240411 and crispr_screen_20240615, are included. Image files for each dataset are archived into several .tar files. Inside each .tar file, the name of each image file is the ID of the cell.
The imaging channels of each file are Alb, polyT, rRNA, M6PR, CathB, Perilipin, Sqstm1, LC3b, TOMM20, Calreticulin, pS6RP, Na+/K+ATPase, SNAP23, TOM70, Rab7, mtRNA, Vimentin, Gapdh.
The RNA expression levels, spatial coordinates, and conditions of individual cells of the diet_conditions_20240411 dataset are in the RNA_scaled_diet_conditions_20240411.h5ad file. The protein intensity levels are in the protein_intensities_diet_conditions_20240411.h5ad file.
The RNA expression levels, spatial coordinates, and perturbation information of individual cells of the crispr_screen_20240615 dataset are in the RNA_scaled_crispr_screen_20240615.h5ad file. The protein intensity levels are in the protein_intensities_crispr_screen_20240615.h5ad file (only for cells with targeting or control guide RNAs).
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