Datasets:

---

xingjiepan

/

SCMG_data

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 2 new columns ({'perturbed_gene_name', 'Unnamed: 0'}) and 17 missing columns ({'std', 'max_ct_exp_measured', 'mean', 'mean_exp_measured', 'gene_id', 'entropy_measured', 'initial_name', 'is_normal_program', 'corr', 'leiden', 'entropy_decoded', 'mean_exp_decoded', 'is_pert_program', 'closest_initial_cluster_dist', 'max_ct_exp_decoded', 'gene_name', 'closest_initial_cluster'}).

This happened while the csv dataset builder was generating data using

hf://datasets/xingjiepan/SCMG_data/data/tutorial_data/perturbation_cluster_annotation.csv (at revision 64625be7d6283abd5236a7ddfeaba46732a0b248)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 714, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              Unnamed: 0: string
              perturbed_gene_name: string
              cluster_name: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 643
              to
              {'gene_id': Value('string'), 'gene_name': Value('string'), 'mean_exp_measured': Value('float64'), 'mean_exp_decoded': Value('float64'), 'max_ct_exp_measured': Value('float64'), 'max_ct_exp_decoded': Value('float64'), 'entropy_measured': Value('float64'), 'entropy_decoded': Value('float64'), 'corr': Value('float64'), 'mean': Value('float64'), 'std': Value('float64'), 'is_normal_program': Value('bool'), 'is_pert_program': Value('bool'), 'leiden': Value('int64'), 'initial_name': Value('string'), 'closest_initial_cluster': Value('string'), 'closest_initial_cluster_dist': Value('float64'), 'cluster_name': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1334, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 911, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 2 new columns ({'perturbed_gene_name', 'Unnamed: 0'}) and 17 missing columns ({'std', 'max_ct_exp_measured', 'mean', 'mean_exp_measured', 'gene_id', 'entropy_measured', 'initial_name', 'is_normal_program', 'corr', 'leiden', 'entropy_decoded', 'mean_exp_decoded', 'is_pert_program', 'closest_initial_cluster_dist', 'max_ct_exp_decoded', 'gene_name', 'closest_initial_cluster'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/xingjiepan/SCMG_data/data/tutorial_data/perturbation_cluster_annotation.csv (at revision 64625be7d6283abd5236a7ddfeaba46732a0b248)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)