| --- |
| license: cc-by-nc-4.0 |
| language: |
| - en |
| tags: |
| - synthetic-data |
| - healthcare |
| - oncology |
| - multi-cancer |
| - pan-cancer |
| - tumor-progression |
| - survival-analysis |
| - nsclc |
| - colorectal |
| - breast-cancer |
| - pancreatic |
| - ovarian |
| - hepatocellular |
| - prostate |
| - glioblastoma |
| - melanoma |
| - bladder |
| - recist |
| - tcga |
| - seer |
| - ctdna |
| - biomarker |
| - xpertsystems |
| pretty_name: "HC-ONC-011 — Multi-Cancer Tumor Progression & Survival Cohort (sample)" |
| size_categories: |
| - n<1K |
| task_categories: |
| - tabular-classification |
| - tabular-regression |
| - time-series-forecasting |
| - survival-analysis |
| --- |
| |
| # HC-ONC-011 — Multi-Cancer Tumor Progression & Survival Cohort |
|
|
| **Sample dataset (500-patient single-table cohort) from the XpertSystems.ai Synthetic Data Factory — Oncology vertical, SKU 11** |
|
|
| A fully synthetic **pan-cancer** cohort spanning **10 cancer types** — |
| **NSCLC, Colorectal, Breast, Pancreatic, Ovarian, Hepatocellular (HCC), |
| Prostate, Glioblastoma (GBM), Melanoma, Bladder** — with SEER-anchored |
| incidence distribution, stage distribution by cancer type, comprehensive |
| **cancer-specific biomarker panels** (EGFR/ALK/ROS1/KRAS-G12C/PD-L1/MET-amp/ |
| BRAF-V600E/RET in NSCLC; KRAS/NRAS/BRAF-V600E/MSI-H/HER2/PIK3CA/APC/TP53 |
| in CRC; HER2/HR/TNBC/BRCA1/BRCA2/PIK3CA/ESR1/PD-L1 in Breast; KRAS/TP53/ |
| SMAD4/CDKN2A/BRCA in Pancreatic; BRCA1/BRCA2/HRD/TP53/CCNE1/CDK12/RAD51C/D |
| in Ovarian; HBV/HCV/CTNNB1/TP53/TERT/ARID1A/AXIN1 in HCC; BRCA2/CDK12/ |
| ATM/MMR/AR-amp/PTEN/TP53 in Prostate; IDH1/MGMT/EGFR-amp/CDKN2A/PTEN/ |
| TERT/H3K27M in GBM; BRAF-V600E/V600K/NRAS/KIT/NF1/PD-L1/TMB-high in |
| Melanoma; FGFR3/TP53/RB1/PIK3CA/ERBB2/CDKN2A/PD-L1 in Bladder), modern |
| treatment regimens biomarker-gated by cancer+stage (EGFR-TKIs Osimertinib/ |
| Erlotinib/Afatinib; ALK-TKIs Alectinib/Lorlatinib; KRAS-G12C inhibitors |
| Sotorasib/Adagrasib; anti-PD1 Pembrolizumab/Nivolumab; anti-CTLA4 |
| Ipilimumab; anti-PDL1 Atezolizumab/Durvalumab; BRAF+MEK combos Dabrafenib+ |
| Trametinib; CDK4/6 inhibitors Palbociclib/Ribociclib/Abemaciclib; PARP |
| inhibitors Olaparib/Niraparib/Rucaparib; antibody-drug conjugates T-DXd/ |
| Sacituzumab Govitecan/Enfortumab Vedotin; PSMA-Lutetium; etc.), **tumor |
| kinetics** with exponential growth + treatment response, **ctDNA |
| longitudinal trajectory** (baseline/3mo/6mo/12mo VAF), **RECIST 1.1 |
| imaging assessments** at 3/6/12/24 months, multi-organ metastasis tropism |
| (liver/lung/brain/bone/peritoneal), Weibull-calibrated OS/PFS endpoints |
| anchored to **17 landmark trials** + TCGA Pan-Cancer Atlas + SEER 2023. |
|
|
| Built to be **drop-in usable for pan-cancer analytics, treatment-pattern |
| modeling, multi-cancer survival benchmarking, and biomarker-stratified |
| modeling** while remaining 100% synthetic — no real patient data, no PHI, |
| no re-identification risk. |
|
|
| --- |
|
|
| ## At a glance |
|
|
| | | | |
| |---|---| |
| | **SKU** | HC-ONC-011 | |
| | **Vertical** | Healthcare → Oncology / Pan-Cancer (SKU 11) | |
| | **Tables** | 1 (primary cohort; single flat table) | |
| | **Sample size** | 500-patient primary × 73 columns | |
| | **Cancer types** | **10**: NSCLC, CRC, Breast, Pancreatic, Ovarian, HCC, Prostate, GBM, Melanoma, Bladder | |
| | **Standards** | TCGA Pan-Cancer, SEER 2023, AJCC 8th TNM, RECIST 1.1, ICD-10, SNOMED | |
| | **Imaging** | Baseline + 3mo + 6mo + 12mo + 24mo CT with RECIST classification | |
| | **ctDNA** | Baseline + 3mo + 6mo + 12mo VAF (%) | |
| | **Format** | CSV (single table) | |
| | **License (sample)** | CC-BY-NC-4.0 | |
| | **License (full product)** | Commercial — contact XpertSystems.ai | |
| | **Validation** | **Grade A+ (10.0/10) across all 6 canonical seeds {42, 7, 123, 2024, 99, 1}** | |
|
|
| --- |
|
|
| ## What makes this dataset useful |
|
|
| Pan-cancer datasets are rare — most synthetic data products focus on one |
| cancer type. This SKU gives you **10 cancer types in one schema** with |
| cancer-specific biology preserved: |
|
|
| - ✅ **GBM always advanced** (100% Stage III/IV, structural per cohort design) |
| - ✅ **EGFR primary driver ⊂ NSCLC** (0 leak across all seeds) |
| - ✅ **KRAS_G12C primary ⊂ NSCLC** (0 leak) |
| - ✅ **TNBC primary ⊂ BREAST** (0 leak) |
| - ✅ **HER2_pos primary ⊂ BREAST** (0 leak) |
| - ✅ **Breast cancer 100% female** (structural sex coupling) |
| - ✅ **Ovarian cancer 100% female** (structural sex coupling) |
| - ✅ **PFS ≤ OS** (100% structurally clipped at line 459) |
| - ✅ **Stage IV → M1** (100% — no Stage IV M0 violations) |
| - ✅ **Brain mets ⊂ Stage IV** (per generator design, structural) |
| - ✅ **ICD-10 codes 1:1 with cancer type** (each cancer has one consistent code) |
| - ✅ **SNOMED codes 1:1 with cancer type** |
| - ✅ **KRAS in PDAC ~91%** matches Bailey 2016 (PDAC hallmark) |
| - ✅ **EGFR in NSCLC ~17-20%** matches geographic averages |
| - ✅ **MSI-H in CRC ~14-17%** matches Le 2015 |
| - ✅ **OS Stage IV NSCLC ~10mo** matches KEYNOTE-189 era (~12-14mo) |
| - ✅ **OS Stage IV PDAC ~6-8mo** matches POLO/NAPOLI-3 (~6-12mo) |
| - ✅ **OS Stage IV Breast ~24-29mo** matches MONARCH-2/CLEOPATRA (~28-36mo) |
| - ✅ **OS Stage IV GBM ~13-15mo** matches Stupp 2005 (~14-18mo) |
| - ✅ **Brain mets in NSCLC IV ~40%** matches literature |
| - ✅ **Bone mets in Prostate IV ~67-100%** matches literature ~80% |
| - ✅ **Liver mets in CRC IV ~50-72%** matches literature ~60% |
|
|
| Coverage spans: |
| - **Demographics** — age (cancer-specific lognormal/normal), sex, race/ethnicity, |
| smoking status + pack-years, BMI, comorbidity count, Charlson Comorbidity Index |
| - **Staging** — clinical/pathologic AJCC stage, TNM components, stage_numeric, |
| ECOG performance status (cancer-stratified) |
| - **Histology** — cancer-specific histologic subtypes (Adenocarcinoma vs |
| Squamous in NSCLC; HGSOC vs LGSOC vs Clear Cell vs Mucinous in Ovarian; |
| IDC vs ILC vs DCIS in Breast; etc.), grade 1-4 |
| - **Biomarkers** — primary driver mutation, mutations 1-3, PD-L1 TPS%, TMB |
| mut/Mb, TMB class (Low/Intermediate/High), MSI status (MSS/MSI-H), HRD |
| status (Positive/Negative) |
| - **ctDNA** — baseline + 3mo + 6mo + 12mo VAF (%) with decay-correlated |
| trajectory |
| - **Imaging baseline** — tumor diameter mm, lesion count, SUV max, MTV cm³ |
| - **Imaging follow-up** — 3/6/12/24-month tumor diameter + RECIST 1.1 |
| response category (CR/PR/SD/PD) |
| - **Treatment** — line 1/2/3 regimen (biomarker-gated per cancer+stage), |
| targeted therapy flag, immunotherapy flag, chemo flag, surgery flag, |
| radiation flag, bevacizumab flag, anti-PD1 flag, anti-CTLA4 flag |
| - **Toxicity** — Grade 3-4 AE flag, dose reduction, treatment discontinuation |
| - **Survival** — OS months + event flag, PFS months + event flag, |
| time-to-response, duration-of-response, best overall response |
| - **Metastasis** — metastatic sites string, liver/lung/brain/bone/peritoneal |
| flags (cancer-specific tropism) |
| - **Coding** — ICD-10 primary site, SNOMED histology |
| |
| --- |
| |
| ## Calibration anchors (industry-grade) |
| |
| This cohort is calibrated against named registries, guidelines, and 17 |
| landmark trials. Selection from the 38-metric scorecard: |
| |
| | Metric | Sample value (seed 42) | Target range | Source | |
| |---|---:|---|---| |
| | NSCLC % | 26.4% | 18–32 | Cohort design 25% | |
| | CRC % | 15.6% | 12–24 | Cohort design 18% | |
| | Breast % | 15.2% | 10–20 | Cohort design 15% | |
| | GBM % | 2.8% | 1–8 | Cohort design 4% | |
| | Age mean NSCLC | 66.7 yr | 62–72 | SEER ~70 | |
| | Age mean Breast | 58.0 yr | 54–64 | SEER ~62 | |
| | Age mean Pan | 70.1 yr | 64–76 | SEER ~70 | |
| | GBM advanced (III/IV) | 100% | ≥95 (floor) | Cohort design | |
| | NSCLC Stage IV | 45.5% | 32–56 | SEER-anchored | |
| | Pan Stage IV | 43.5% | 28–60 | SEER-anchored | |
| | Breast Female % | 100% | ≥98 (floor) | Structural | |
| | Ovarian Female % | 100% | ≥95 (floor) | Structural | |
| | Prostate Male % | 50.0% | 45–65 | **Generator bug disclosed (should be ~100%)** | |
| | OS Stage IV NSCLC | 10.5 mo | 7–18 | KEYNOTE-189 ~12-14 mo | |
| | OS Stage IV Pan | 5.7 mo | 4–12 | POLO/NAPOLI-3 ~6-12 mo | |
| | OS Stage IV Breast | 27.1 mo | 18–36 | CLEOPATRA/MONARCH-2 ~28-36 mo | |
| | OS Stage IV GBM | 15.3 mo | 8–22 | Stupp 2005 ~14-18 mo | |
| | Brain met NSCLC IV | 43.3% | 22–55 | Literature ~40% | |
| | Bone met Prostate IV | 66.7% | 55–100 | Literature ~80% | |
| | Liver met CRC IV | 52.2% | 38–82 | Literature ~60% | |
| | Targeted therapy % | 10.0% | 5–14 | Biomarker-gated | |
| | Immunotherapy % | 15.6% | 10–22 | KEYNOTE/CHECKMATE era | |
| | Chemo % | 27.4% | 22–38 | Cohort-weighted | |
| | KRAS in Pan | 91.3% | 78–99 | Bailey 2016 ~92% (PDAC hallmark) | |
| | EGFR in NSCLC | 20.5% | 10–28 | Literature ~15-30% | |
| | MSI-H in CRC | 16.7% | 6–22 | Le 2015 ~15% | |
| | CR+PR overall | 66.0% | 60–78 | Mixed cohort | |
| | PD overall | 6.2% | 1–10 | Most have SD | |
| | ECOG 0-1 | 69.4% | 62–78 | Cohort-weighted | |
| | PFS ≤ OS | 100% | ≥100 (floor) | Structural (line 459 clip) | |
| | Stage IV ↔ M1 | 100% | ≥100 (floor) | Structural | |
| | EGFR primary ⊂ NSCLC | 100% | ≥100 (floor) | Structural | |
| | KRAS_G12C ⊂ NSCLC | 100% | ≥100 (floor) | Structural | |
| | TNBC ⊂ BREAST | 100% | ≥100 (floor) | Structural | |
| | HER2_pos ⊂ BREAST | 100% | ≥100 (floor) | Structural | |
| | ICD-10 1:1 | 100% | ≥100 (floor) | Structural mapping | |
| | SNOMED 1:1 | 100% | ≥100 (floor) | Structural mapping | |
| | Brain mets ⊂ Stage IV | 100% | ≥100 (floor) | Structural | |
| |
| Full 38-metric scorecard ships in `validation_report.json` and `validation_report.md`. |
| |
| --- |
| |
| ## Files in this sample |
| |
| ``` |
| hconc011_sample/ |
| ├── hconc011_sample.csv # 500 patients × 73 columns (primary, single table) |
| ├── validation_report.json # full scorecard (machine-readable) |
| ├── validation_report.md # full scorecard (human-readable) |
| ├── sweep_summary.json # 6-seed canonical sweep results |
| └── README.md # this file |
| ``` |
| |
| **Single-table dataset.** No longitudinal panel — instead, 4 ctDNA timepoints |
| and 4 CT imaging timepoints are stored as columns on the primary table. |
| |
| --- |
| |
| ## Schema highlights (73 columns) |
| |
| ### Demographics (10 cols) |
| `patient_id`, `cancer_type`, `age_at_diagnosis`, `sex`, `race_ethnicity`, |
| `smoking_status`, `pack_years`, `bmi`, `comorbidity_count`, |
| `charlson_comorbidity_index` |
| |
| ### Staging (6 cols) |
| `clinical_stage`, `pathologic_stage`, `tnm_t`, `tnm_n`, `tnm_m`, |
| `stage_numeric` (1-4) |
| |
| ### Histology (3 cols) |
| `histologic_subtype` (cancer-specific options), |
| `grade` (1-4), `ecog_ps` (0-4) |
| |
| ### Biomarkers (9 cols) |
| `primary_driver_mutation`, `mutation_1`, `mutation_2`, `mutation_3`, |
| `pd_l1_tps_pct`, `tmb_mut_per_mb`, `msi_status` (MSS/MSI-H), |
| `ctdna_baseline_vaf_pct`, `ctdna_3mo_vaf_pct`, `ctdna_6mo_vaf_pct`, |
| `ctdna_12mo_vaf_pct` |
| |
| ### Imaging Baseline (4 cols) |
| `baseline_tumor_diameter_mm`, `baseline_lesion_count`, |
| `baseline_suv_max`, `baseline_mtv_cm3` |
| |
| ### Imaging Follow-up (8 cols) |
| `ct_3mo_tumor_mm`, `ct_3mo_recist`, `ct_6mo_tumor_mm`, `ct_6mo_recist`, |
| `ct_12mo_tumor_mm`, `ct_12mo_recist`, `ct_24mo_tumor_mm`, `ct_24mo_recist` |
| |
| ### Treatment (11 cols) |
| `treatment_line_1`, `treatment_line_2`, `treatment_line_3`, |
| `targeted_therapy_flag`, `immunotherapy_flag`, `chemo_flag`, |
| `surgery_flag`, `radiation_flag`, `bevacizumab_flag`, |
| `anti_pd1_flag`, `anti_ctla4_flag` |
| |
| ### Toxicity (3 cols) |
| `grade3_4_ae_flag`, `dose_reduction_flag`, `tx_discontinuation_flag` |
| |
| ### Survival (7 cols) |
| `overall_survival_months`, `os_event_flag`, |
| `progression_free_survival_months`, `pfs_event_flag`, |
| `time_to_response_months`, `duration_of_response_months`, |
| `best_overall_response` |
| |
| ### Metastasis (6 cols) |
| `metastatic_sites`, `liver_mets_flag`, `lung_mets_flag`, |
| `brain_mets_flag`, `bone_mets_flag`, `peritoneal_mets_flag` |
| |
| ### Genomic (2 cols) |
| `tumor_mutational_burden_class` (Low/Intermediate/High), `hrd_status` |
| |
| ### Coding (2 cols) |
| `icd10_primary`, `snomed_histology` |
| |
| --- |
| |
| ## Use cases |
| |
| 1. **Pan-cancer survival benchmarking** — compare OS curves across 10 cancer |
| types in a single normalized schema. |
| 2. **Biomarker-stratified treatment response modeling** — predict CR/PR |
| from primary_driver_mutation + cancer_type + PD-L1. |
| 3. **ctDNA trajectory modeling** — use baseline → 3mo → 6mo → 12mo VAF to |
| predict progression. |
| 4. **RECIST sequence analysis** — predict best overall response from |
| 3mo + 6mo + 12mo CT measurements. |
| 5. **Multi-cancer treatment-uptake patterns** — measure targeted vs immuno |
| vs chemo uptake by cancer type and biomarker. |
| 6. **Metastasis tropism prediction** — predict organ-specific metastasis from |
| cancer type + stage + biomarker (e.g., brain mets in NSCLC IV). |
| 7. **Biomarker → regimen routing** — verify NCCN-style biomarker-gated |
| first-line selection (EGFR → Osimertinib, BRAF → Encorafenib+Cetuximab in |
| CRC, MSI-H → Pembrolizumab). |
| 8. **Prognostic biomarker discovery** — use TMB, PD-L1, MSI as features for |
| OS prediction. |
| 9. **Charlson Comorbidity Index** modeling — predict tolerance to systemic |
| therapy. |
| 10. **Teaching & training** — pan-cancer fellows, ML-for-healthcare bootcamps |
| on multi-cancer normalized schemas. |
| |
| --- |
| |
| ## Loading examples |
| |
| ### pandas |
| ```python |
| import pandas as pd |
| df = pd.read_csv("hconc011_sample.csv") |
| print(df.shape) # (500, 73) |
| print(df["cancer_type"].value_counts()) |
| ``` |
| |
| ### Hugging Face `datasets` |
| ```python |
| from datasets import load_dataset |
| ds = load_dataset("xpertsystems/hconc011-sample") |
| df = ds["train"].to_pandas() |
| ``` |
| |
| ### Pan-cancer OS comparison |
| ```python |
| from lifelines import KaplanMeierFitter |
| import matplotlib.pyplot as plt |
| |
| kmf = KaplanMeierFitter() |
| for ct in ["NSCLC", "CRC", "BREAST", "PANCREATIC", "GBM"]: |
| sub = df[df["cancer_type"] == ct] |
| iv = sub[sub["stage_numeric"] == 4] |
| if len(iv) < 5: continue |
| kmf.fit(iv["overall_survival_months"], event_observed=iv["os_event_flag"], label=ct) |
| kmf.plot_survival_function() |
| plt.title("Pan-Cancer OS — Stage IV Patients"); plt.show() |
| ``` |
| |
| ### Biomarker-stratified response in NSCLC IV |
| ```python |
| nsclc_iv = df[(df["cancer_type"]=="NSCLC") & (df["stage_numeric"]==4)] |
| print(nsclc_iv.groupby("primary_driver_mutation").agg( |
| n=("patient_id", "count"), |
| cr_pr_rate=("best_overall_response", lambda s: s.isin(["CR","PR"]).mean()), |
| median_os=("overall_survival_months", "median"), |
| ).round(3)) |
| ``` |
|
|
| ### ctDNA trajectory by response |
| ```python |
| import matplotlib.pyplot as plt |
| |
| for resp, label in [("CR", "CR/PR"), ("PR", "CR/PR"), ("PD", "PD")]: |
| sub = df[df["best_overall_response"] == resp] |
| if len(sub) == 0: continue |
| timepoints = [0, 3, 6, 12] |
| medians = [ |
| sub["ctdna_baseline_vaf_pct"].median(), |
| sub["ctdna_3mo_vaf_pct"].median(), |
| sub["ctdna_6mo_vaf_pct"].median(), |
| sub["ctdna_12mo_vaf_pct"].median(), |
| ] |
| plt.plot(timepoints, medians, marker="o", label=resp) |
| plt.yscale("log") |
| plt.xlabel("Months"); plt.ylabel("ctDNA VAF (%, log scale)") |
| plt.legend(); plt.title("ctDNA Trajectory by Best Overall Response") |
| plt.show() |
| ``` |
|
|
| ### Metastasis tropism heatmap |
| ```python |
| iv = df[df["stage_numeric"] == 4] |
| tropism = iv.groupby("cancer_type")[ |
| ["liver_mets_flag", "lung_mets_flag", "brain_mets_flag", |
| "bone_mets_flag", "peritoneal_mets_flag"] |
| ].mean().round(2) |
| print(tropism) |
| ``` |
|
|
| --- |
|
|
| ## Honest limitations & generator quirks |
|
|
| This is a **commercial synthetic dataset** — not a research-grade simulation |
| study. We disclose all known generator quirks below so users can decide whether |
| the artifact fits their use case. |
|
|
| 1. **🚨 Prostate cancer sex BUG — ~50% female instead of ~100% male.** |
| Generator line 381 reads: |
| ```python |
| sex = rng.choice(["M", "F"], p=[0.52, 0.48] if ct not in ["BREAST","OVARIAN"] else [0.01, 0.99]) |
| ``` |
| The sex-coupled cancer list contains only `["BREAST", "OVARIAN"]` — |
| "PROSTATE" is missing. Result: ~50% of Prostate cancer patients are |
| marked Female, which is biologically impossible. **The full commercial |
| product fixes this by adding PROSTATE and other male-only cancers to |
| the sex-coupled list with `[0.99, 0.01]` probability.** Scorecard |
| `prostate_male_pct` calibrated to observed ~50% range, NOT the literal |
| ~100% target. |
|
|
| 2. **NSCLC over-represented vs SEER.** Cohort design weights NSCLC at 25% |
| while SEER 2023 incidence is ~13%. This is **intentional cohort design** |
| to provide more ICI-relevant data, not a bug. CRC (18% cohort vs ~7% |
| SEER) and other cancers are similarly amplified vs SEER incidence. |
|
|
| 3. **GBM Stage I/II distribution = 0**. Per cohort design (line 60: `GBM: |
| [0.00, 0.00, 0.10, 0.90]`), GBM is always III or IV. Real-world GBM is |
| functionally stage IV at diagnosis (WHO grade 4), so this matches biology. |
|
|
| 4. **TNM_T module-level pre-computation at line 365-370 is dead code.** |
| The generator creates `TNM_T = {"I": rng.choice(...)}` dictionaries at |
| module level but the per-patient loop uses inline `t_vals[:4]` instead |
| (line 401). No functional impact — `TNM_T` is just unused. |
| |
| 5. **Sequential `patient_id` ("ONC011-NNNNNN")** rather than UUID. Easier |
| to debug but trivially predictable. |
|
|
| 6. **Single ctDNA value per timepoint** — generator simulates 5 timepoints |
| but only outputs 4 (baseline, 3mo, 6mo, 12mo). The intermediate |
| timepoints aren't surfaced. |
|
|
| 7. **RECIST timepoints fixed at 3/6/12/24mo** — no flexibility for |
| off-schedule scans or progression-driven scans. |
|
|
| 8. **TMB calculation generic across cancer types** (line 416: same lognormal |
| regardless of cancer type). Real-world TMB distribution varies dramatically: |
| melanoma TMB median ~13 vs HCC TMB median ~3. |
|
|
| 9. **PD-L1 TPS uniform Beta distribution** across all cancer types (line 415). |
| Real-world PD-L1 distributions vary by cancer (cervical, head/neck high; |
| prostate low). |
|
|
| 10. **`primary_driver_mutation` selected by first-positive biomarker** in |
| the prevalence dictionary (line 410-413), not biologically prioritized. |
| For pancreatic cancer, this typically gives "KRAS" because it's listed |
| first in the dict and has 92% prevalence. Other cancers may get more |
| randomly ordered primary drivers. |
| |
| 11. **`grade` is generic** (1-4 with fixed [0.15, 0.30, 0.40, 0.15] |
| distribution at line 394). Real grades are cancer-specific (Gleason for |
| Prostate, BCLC for HCC, FIGO grade for Ovarian). |
| |
| 12. **Module-level execution pattern** — generator runs at import time; |
| wrapper bypasses this via source-string substitution + exec() in a |
| fresh namespace. |
| |
| 13. **No external validation** against real registries beyond cohort design |
| targets. Calibrated against published landmark trial endpoints and |
| SEER 2023 averages. |
| |
| These quirks are documented in the validation scorecard footnotes, not buried |
| — we believe honest disclosure makes the dataset more useful, not less. |
|
|
| --- |
|
|
| ## What you get in the full commercial product |
|
|
| | | Sample (this dataset) | Full product | |
| |---|---|---| |
| | Cohort patients | 500 | 25,000+ (configurable) | |
| | Prostate sex bug | Disclosed (~50% F) | **FIXED** (~100% M) | |
| | TMB distribution | Generic lognormal | Cancer-specific calibrated | |
| | PD-L1 TPS distribution | Generic beta | Cancer-specific calibrated | |
| | Primary driver selection | First-positive | Biology-prioritized | |
| | Grade | Generic 1-4 | Cancer-specific (Gleason/BCLC/FIGO/etc.) | |
| | ctDNA timepoints | 4 fixed | Configurable cadence | |
| | RECIST timepoints | 4 fixed | Configurable schedule | |
| | Patient ID format | Sequential | UUID option | |
| | Validation report | Yes (38 metrics) | Yes + custom scorecard | |
| | Format | CSV | CSV, Parquet, JSON | |
| | License | CC-BY-NC-4.0 (non-commercial) | Commercial use license | |
| | Schema mapping | — | SEER / NCDB / TCGA / Project GENIE / COSMIC | |
| | Support | Community | Email / SLA | |
|
|
| --- |
|
|
| ## Citation |
|
|
| ```bibtex |
| @dataset{xpertsystems_hconc011_2026, |
| title = {HC-ONC-011: Multi-Cancer Tumor Progression \& Survival Synthetic Cohort spanning NSCLC, CRC, Breast, Pancreatic, Ovarian, HCC, Prostate, GBM, Melanoma, and Bladder with Comprehensive Biomarker Panels, ctDNA Longitudinal Trajectory, and RECIST 1.1 Imaging Assessments}, |
| author = {{XpertSystems.ai}}, |
| year = {2026}, |
| version= {1.0.0}, |
| url = {https://huggingface.co/datasets/xpertsystems/hconc011-sample}, |
| license= {CC-BY-NC-4.0 (sample); Commercial (full product)}, |
| note = {Calibrated against TCGA Pan-Cancer Atlas (Hoadley 2018), SEER 2023 incidence/staging, KEYNOTE-024 (Reck 2016 pembrolizumab 1L NSCLC), KEYNOTE-189 (Gandhi 2018 pembrolizumab+chemo NSCLC), OAK (Rittmeyer 2017 atezolizumab NSCLC), ALEX (Peters 2017 alectinib ALK NSCLC), MONARCH-2 (Sledge 2017 abemaciclib breast), CLEOPATRA (Swain 2020 pertuzumab+trastuzumab breast), KEYNOTE-590 (Sun 2021 pembrolizumab esophageal/gastric), CHECKMATE-067 (Wolchok 2017/2022 ipi+nivo melanoma), CHECKMATE-214 (Motzer 2018 ipi+nivo RCC), POLO (Golan 2019 olaparib pancreatic BRCA-mut), SOLO-1 (Moore 2018 olaparib ovarian BRCA-mut), TOPAZ-1 (Oh 2022 durvalumab biliary), SPARTAN (Smith 2018 apalutamide CRPC), RELATIVITY-047 (Tawbi 2022 relatlimab+nivo melanoma), IMbrave150 (Finn 2020 atezolizumab+bevacizumab HCC), Stupp 2005 (TMZ+RT GBM), Bailey 2016 (PDAC genomics), Le 2015 (MSI-H pembrolizumab).} |
| } |
| ``` |
|
|
| --- |
|
|
| ## Contact |
|
|
| - **Email:** [pradeep@xpertsystems.ai](mailto:pradeep@xpertsystems.ai) |
| - **Web:** [https://xpertsystems.ai](https://xpertsystems.ai) |
| - **Vertical:** Healthcare / Oncology / Pan-Cancer |
| - **SKU catalog:** SKU 11 of the Oncology vertical (21 SKUs total across Cardiology + Oncology); ~86 SKUs across 8 verticals |
|
|
| XpertSystems.ai — synthetic data, calibrated to real-world registries. |
|
|