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551d7656dfcd2d9ac6106ecaf6448701f59205fd
393
py
Python
closest_numbers.py
odellus/year_of_code
bfa2b30893bcc12f46e73ac34c63b5b05b27af5f
[ "MIT" ]
1
2017-01-03T02:24:34.000Z
2017-01-03T02:24:34.000Z
closest_numbers.py
odellus/year_of_code
bfa2b30893bcc12f46e73ac34c63b5b05b27af5f
[ "MIT" ]
null
null
null
closest_numbers.py
odellus/year_of_code
bfa2b30893bcc12f46e73ac34c63b5b05b27af5f
[ "MIT" ]
null
null
null
def closestNumbers(numbers): numbers.sort() mindiff = sys.maxint n = len(numbers) for k in range(n-1): absdiff = abs(numbers[k] - numbers[k+1]) if absdiff < mindiff: mindiff = absdiff for k in range(n-1): absdiff = abs(numbers[k] - numbers[k+1]) if absdiff == mindiff: print "{0} {1}".format(numbers[k],numbers[k+1])
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py
Python
denverapi/bdtp.py
xcodz-dot/denver
4142594756ceb7edb23d77cf7549f8d770185def
[ "MIT" ]
4
2020-09-26T08:48:53.000Z
2020-12-02T21:50:28.000Z
denverapi/bdtp.py
xcodz-dot/denver
4142594756ceb7edb23d77cf7549f8d770185def
[ "MIT" ]
22
2020-09-26T08:12:13.000Z
2020-12-03T04:01:13.000Z
denverapi/bdtp.py
xcodz-dot/denver-api
4142594756ceb7edb23d77cf7549f8d770185def
[ "MIT" ]
3
2020-09-26T17:25:14.000Z
2020-12-02T21:47:18.000Z
""" ##Big Data Transfer Protocol ###What does it do This protocol sends big data on a address (IPv4,port) without worrying about pipe errors. """ __author__ = "Xcodz" __version__ = "2021.2.24" import abc import socket import time import typing from . import thread_control default_buffer_size = 100000 class _BaseSender(abc.ABC): @abc.abstractmethod def send(self, c): pass class _BaseReceiver(abc.ABC): @abc.abstractmethod def recv(self, c): pass class DataSenderHost(_BaseSender): """ it is used for sending data as a host or in other words, server to create a new DataSenderHost please use function implementation for it """ def __init__(self): self.data = b"" self.address: tuple = ("", 0) self.data_send: int = 0 self.buffer_size: int = default_buffer_size self.task = False def send(self, connected_socket: socket.socket = None): """ use this function to initiate the connection and send the data. `connected_socket` can be supplied if you want to send over a already connected socket. """ if connected_socket is None: s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) s.bind(self.address) s.listen(5) connection, _ = s.accept() else: connection = connected_socket if isinstance(self.data, bytes): for line in range(0, len(self.data), self.buffer_size): lts = self.data[line : line + self.buffer_size] connection.sendall(lts) self.data_send += self.buffer_size elif isinstance(self.data, typing.BinaryIO): while True: line = self.data.read(self.buffer_size) if line == b"": break connection.sendall(line) self.data_send += self.buffer_size connection.send(b"") if connected_socket is None: connection.close() s.close() self.task = True class DataSenderPort(_BaseSender): """ it is used for sending data as a client to create a new DataSenderPort please use function implementation for it """ def __init__(self): self.data: bytes = b"" self.address: tuple = ("", 0) self.data_send: int = 0 self.buffer_size: int = default_buffer_size self.task = False def send(self, connected_socket: socket.socket = None): """ use this function to initiate the connection and send the data. `connected_socket` can be supplied if you want to send over a already connected socket. """ if connected_socket is None: s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) s.connect(self.address) else: s = connected_socket if isinstance(self.data, bytes): for x in range(0, len(self.data), self.buffer_size): lts = self.data[x : x + self.buffer_size] s.sendall(lts) self.data_send += self.buffer_size elif isinstance(self.data, typing.BinaryIO): while True: line = self.data.read(self.buffer_size) if line == b"": break s.sendall(line) self.data_send += self.buffer_size s.send(b"") if connected_socket is None: s.close() self.task = True class DataReceiverHost(_BaseReceiver): """ it is used for receiving data as a server or host to create a new DataReceiverHost please use function implementation for it """ def __init__(self): self.address: tuple = ("", 0) self.data_recv: int = 0 self.buffer_size: int = default_buffer_size self.data = b"" self.task = False def recv(self, connected_socket: socket.socket = None): """ use this function to initiate the connection and start receiving the data. `connected_socket` can be supplied if you want to receive over a already connected socket. """ if connected_socket is None: s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) s.bind(self.address) s.listen(5) connection, _ = s.accept() else: connection = connected_socket recv_bytes = b"\0" while recv_bytes != b"": recv_bytes = connection.recv(self.buffer_size) self.data += recv_bytes self.data_recv += self.buffer_size if connected_socket is None: connection.close() s.close() self.task = True class DataReceiverPort(_BaseReceiver): """ it is used for receiving data as a client to create a new DataReceiverPort please use function implementation for it """ def __init__(self): self.address: tuple = ("", 0) self.data_recv: int = 0 self.buffer_size: int = default_buffer_size self.data = b"" self.task = False def recv(self, connected_socket: socket.socket = None): """ use this function to initiate the connection and start receiving the data. `connected_socket` can be supplied if you want to receive over a already connected socket. """ if connected_socket is None: s = socket.socket(socket.AF_INET, socket.SOCK_STREAM) s.connect(self.address) connection = s else: connection = connected_socket recv_bytes = b"\0" while recv_bytes != b"": recv_bytes = connection.recv(self.buffer_size) self.data += recv_bytes self.data_recv += self.buffer_size if connected_socket is None: connection.close() self.task = True def new_send_data_host(data: bytes, addr: tuple = None, buffer_size=None): """ Make a new `DataSenderHost` with provided arguments. It's better to not supply `addr` if you are going to use the object on existing connection. It is also not recommended to change `buffer_size` because this argument is supposed to be same at both the sender and receiver. You can then use the `send` method of the returned object to send the provided data. Example: ```python from denverapi import bdtp import socket # Without existing connection my_sender = bdtp.new_send_data_host(b"Some Data", ("127.0.0.1", 7575)) my_sender.send() # With existing connection my_server = socket.socket() my_server.bind(("127.0.0.1", 1234)) my_server.listen(5) my_connection, address = my_server.accept() my_sender = bdtp.new_send_data_host(b"Some Data") my_sender.send(my_connection) # With changed buffer size my_sender = bdtp.new_send_data_host(b"Some Data", ("127.0.0.1", 12345), 3) my_sender.send() ``` """ sender_object = DataSenderHost() sender_object.data = data sender_object.address = addr if buffer_size is not None: sender_object.buffer_size = buffer_size return sender_object def new_send_data_port(data: bytes, addr: tuple = None, buffer_size=None): """ Make a new `DataSenderPort` with provided arguments. It's better to not supply `addr` if you are going to use the object on existing connection. It is also not recommended to change `buffer_size` because this argument is supposed to be same at both the sender and receiver. You can then use the `send` method of the returned object to send the provided data. Example: ```python from denverapi import bdtp import socket # Without existing connection my_sender = bdtp.new_send_data_port(b"Some Data", ("127.0.0.1", 7575)) my_sender.send() # With existing connection my_connection = socket.socket() my_connection.connect(("127.0.0.1", 1234)) my_sender = bdtp.new_send_data_port(b"Some Data") my_sender.send(my_connection) # With changed buffer size my_sender = bdtp.new_send_data_host(b"Some Data", ("127.0.0.1", 12345), 3) my_sender.send() ``` """ sender_object = DataSenderPort() sender_object.data = data sender_object.address = addr if buffer_size is not None: sender_object.buffer_size = buffer_size return sender_object def new_receive_data_host(addr: tuple = None, buffer_size=None): """ Make a new `DataReceiverHost` object to receive data sent by sender. It is not recommended to supply `addr` if you are going to use it with existing connection. It is highly discouraged to use `buffer_size` argument as it is supposed to be kept same at both sender and receiver. You can use the returned object's `recv` method to start receiving data. Once receiving is complete. data will be stored in object's `data` attribute as bytes. ```python from denverapi import bdtp import socket # Without existing connection my_receiver = bdtp.new_receive_data_host(("127.0.0.1", 7575)) my_receiver.recv() # With existing connection my_connection = socket.socket() my_connection.connect(("127.0.0.1", 1234)) my_receiver = bdtp.new_receive_data_host() my_receiver.recv(my_connection) # With changed buffer size my_receiver = bdtp.new_receive_data_host(("127.0.0.1", 12345), 3) my_receiver.recv() ``` """ sender_object = DataReceiverHost() sender_object.address = addr if buffer_size is not None: sender_object.buffer_size = buffer_size return sender_object def new_receive_data_port(addr: tuple, buffer_size=None): """ Make a new `DataReceiverHost` object to receive data sent by sender. It is not recommended to supply `addr` if you are going to use it with existing connection. It is highly discouraged to use `buffer_size` argument as it is supposed to be kept same at both sender and receiver. You can use the returned object's `recv` method to start receiving data. Once receiving is complete. data will be stored in object's `data` attribute as bytes. ```python from denverapi import bdtp import socket # Without existing connection my_receiver = bdtp.new_receive_data_port(("127.0.0.1", 7575)) my_receiver.recv() # With existing connection my_connection = socket.socket() my_connection.connect(("127.0.0.1", 1234)) my_receiver = bdtp.new_receive_data_port() my_receiver.recv(my_connection) # With changed buffer size my_receiver = bdtp.new_receive_data_port(("127.0.0.1", 12345), 3) my_receiver.recv() ``` """ sender_object = DataReceiverPort() sender_object.address = addr if buffer_size is not None: sender_object.buffer_size = buffer_size return sender_object def attach_speed_logger(data_object) -> typing.List[int]: """ Attaches a speed logger that captures the speed of transfer for either receiver object or sender object. Returns a list that gets updated as the speed transfer continues. To get the average speed use `average_speed_log`. Example: ```python from denverapi import bdtp sender = bdtp.new_receive_data_port(b"Hello World"*10000, ("localhost", 8000)) speed_log = bdtp.attach_speed_logger(sender) sender.send() speed = bdtp.average_speed_log(speed_log) ``` """ spl = [] @thread_control.runs_parallel def sps(spl, d: _BaseSender): old = 0 new = 0 spl.append(d.buffer_size) while not d.task: time.sleep(0.01) new = d.data_send spl.append(new - old) old = new @thread_control.runs_parallel def spr(spl, d: _BaseReceiver): old = 0 new = 0 spl.append(d.buffer_size) while not d.task: time.sleep(0.01) new = d.data_recv spl.append(new - old) old = new (spr if isinstance(data_object, _BaseReceiver) else sps)(spl, data_object) return spl def launch(data_object, connected_socket=None): """ Just a simple function that starts a sender or receiver object. It is here because it looks good when using this. """ if isinstance(data_object, _BaseSender): data_object.send(connected_socket) else: data_object.recv(connected_socket) def average_speed_log(spl: list) -> int: """ Finds average speed of the connection. It strips out 0 from the end and starting of `spl` and then finds the average and returns it """ while spl[0] == 0: spl.pop(0) while spl[-1] == 0: spl.pop() return (sum(spl) / len(spl)) * 100 def main(): """ Nothing more than a test """ print("Reading Data") datats = open(input("File > "), "r+b").read() print("Read Data") print("Making Classes") sc = new_send_data_port(datats, ("127.0.0.1", 4623)) rc = new_receive_data_host(("127.0.0.1", 4623)) spl = attach_speed_logger(rc) from threading import Thread Thread(target=launch, args=(sc,)).start() rc.recv() print(len(spl)) print( f"Data Send:\n\tlen: {len(sc.data)}\nData Received:\n\tlen: {len(rc.data)}\n\tis_equal: {rc.data == sc.data}" ) print(f"Average Speed: {average_speed_log(spl)} bytes per second") if __name__ == "__main__": main()
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9b8fd2bf80fa07a3bd7f3ddd5254592ae0988fc9
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py
Python
pics/admin.py
Joseph-Odhiambo/Gallary
f8dfab1149f11de94519afe597fe87f4ed28b9a5
[ "MIT" ]
1
2021-05-19T12:58:15.000Z
2021-05-19T12:58:15.000Z
pics/admin.py
HASSAN1A/Gallery
a73bd93bcecbb830b4d676c9e9dd306880cac6f2
[ "MIT" ]
null
null
null
pics/admin.py
HASSAN1A/Gallery
a73bd93bcecbb830b4d676c9e9dd306880cac6f2
[ "MIT" ]
null
null
null
from django.contrib import admin from .models import Image,Areas,Category # Register your models here. admin.site.register(Image) admin.site.register(Areas) admin.site.register(Category)
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32da7030ea8ed7c10970c252248ba50cc03bff1f
152
py
Python
kfdda/models/__init__.py
ll1l11/pymysql-test
de5747366bbf23ecb0b1f01059b3a69c8ac4936d
[ "MIT" ]
null
null
null
kfdda/models/__init__.py
ll1l11/pymysql-test
de5747366bbf23ecb0b1f01059b3a69c8ac4936d
[ "MIT" ]
null
null
null
kfdda/models/__init__.py
ll1l11/pymysql-test
de5747366bbf23ecb0b1f01059b3a69c8ac4936d
[ "MIT" ]
null
null
null
# -*- coding: utf-8 -*- from ..core import db from ..helpers import JSONSerializer class BaseModel(db.Model, JSONSerializer): __abstract__ = True
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32e4f05624819cc83857abc3b6af4086f2c2a88e
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py
Python
setup.py
kimballa/arduino-dbg
639d73b6d96996218cf9aafde52f3683c9d93775
[ "BSD-3-Clause" ]
null
null
null
setup.py
kimballa/arduino-dbg
639d73b6d96996218cf9aafde52f3683c9d93775
[ "BSD-3-Clause" ]
null
null
null
setup.py
kimballa/arduino-dbg
639d73b6d96996218cf9aafde52f3683c9d93775
[ "BSD-3-Clause" ]
null
null
null
# Minimal setup.py # # Enables installing requirements as declared in setup.cfg. # From this directory, run: # pip install . from setuptools import setup setup()
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0
0
1
0
true
0
0.5
0
0.5
0
1
0
0
null
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
1
0
1
0
0
0
0
4
32ff2b91e7cdacd12f1c52a76ec14a6214fafa45
452
py
Python
main.py
rishi-chauhan/sudoku
2b07954b2f3ab5146ab0f96eb4d0509a3ea45eb2
[ "MIT" ]
null
null
null
main.py
rishi-chauhan/sudoku
2b07954b2f3ab5146ab0f96eb4d0509a3ea45eb2
[ "MIT" ]
null
null
null
main.py
rishi-chauhan/sudoku
2b07954b2f3ab5146ab0f96eb4d0509a3ea45eb2
[ "MIT" ]
null
null
null
"""Main class for sudoku game. Run this to solve the game.""" from board import Board # ENTRIES contains the values of each cell ENTRIES = [0, 0, 0, 2, 6, 0, 7, 0, 1, 6, 8, 0, 0, 7, 0, 0, 9, 0, 1, 9, 0, 0, 0, 4, 5, 0, 0, 8, 2, 0, 1, 0, 0, 0, 4, 0, 0, 0, 4, 6, 0, 2, 9, 0, 0, 0, 5, 0, 0, 0, 3, 0, 2, 8, 0, 0, 9, 3, 0, 0, 0, 7, 4, 0, 4, 0, 0, 5, 0, 0, 3, 6, 7, 0, 3, 0, 1, 8, 0, 0, 0] board = Board(ENTRIES)
37.666667
67
0.446903
107
452
1.88785
0.271028
0.217822
0.118812
0.059406
0.049505
0
0
0
0
0
0
0.272727
0.34292
452
11
68
41.090909
0.407407
0.214602
0
0
0
0
0
0
0
0
0
0
0
1
0
false
0
0.142857
0
0.142857
0
0
0
1
null
1
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
1
0
0
0
0
0
0
0
null
0
0
0
0
0
0
0
0
0
0
0
0
0
4
fd51dbb2cb05ef487bcf83c509336b681bc19872
769
py
Python
regcore/tests/layer_tests.py
navigo/regulations-core
0b2a2034baacfa1cc5ff87f14db7d1aaa8d260c3
[ "CC0-1.0" ]
17
2016-06-14T19:06:02.000Z
2021-10-03T23:46:00.000Z
regcore/tests/layer_tests.py
navigo/regulations-core
0b2a2034baacfa1cc5ff87f14db7d1aaa8d260c3
[ "CC0-1.0" ]
42
2016-04-06T22:34:26.000Z
2020-04-14T22:00:24.000Z
regcore/tests/layer_tests.py
navigo/regulations-core
0b2a2034baacfa1cc5ff87f14db7d1aaa8d260c3
[ "CC0-1.0" ]
20
2016-05-04T06:04:34.000Z
2020-10-07T16:16:03.000Z
from django.test import TestCase from regcore.layer import standardize_params class LayerParamsTests(TestCase): def test_old_format(self): lp = standardize_params('label', 'version') self.assertEqual(lp.doc_type, 'cfr') self.assertEqual(lp.doc_id, 'version/label') self.assertEqual(lp.tree_id, 'label') def test_new_format(self): lp = standardize_params('cfr', 'version/label') self.assertEqual(lp.doc_type, 'cfr') self.assertEqual(lp.doc_id, 'version/label') self.assertEqual(lp.tree_id, 'label') lp = standardize_params('preamble', 'docid') self.assertEqual(lp.doc_type, 'preamble') self.assertEqual(lp.doc_id, 'docid') self.assertEqual(lp.tree_id, 'docid')
33.434783
55
0.669701
96
769
5.1875
0.28125
0.271084
0.307229
0.240964
0.636546
0.35743
0.35743
0.35743
0.35743
0.35743
0
0
0.19896
769
22
56
34.954545
0.808442
0
0
0.352941
0
0
0.131339
0
0
0
0
0
0.529412
1
0.117647
false
0
0.117647
0
0.294118
0
0
0
0
null
1
1
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
null
0
0
0
1
0
0
0
0
0
0
0
0
0
4
b5bf895845b26e76fb4d05e08f9ee6d0b182cce7
37
py
Python
reto_numeros_nones.py
Naxred/PensamientoComputacionalPython
a19fe394fd8b6265d486d432bbc5774d0cf35368
[ "Unlicense" ]
null
null
null
reto_numeros_nones.py
Naxred/PensamientoComputacionalPython
a19fe394fd8b6265d486d432bbc5774d0cf35368
[ "Unlicense" ]
null
null
null
reto_numeros_nones.py
Naxred/PensamientoComputacionalPython
a19fe394fd8b6265d486d432bbc5774d0cf35368
[ "Unlicense" ]
null
null
null
for x in range(1,100,2): print(x)
18.5
24
0.594595
9
37
2.444444
0.888889
0
0
0
0
0
0
0
0
0
0
0.172414
0.216216
37
2
25
18.5
0.586207
0
0
0
0
0
0
0
0
0
0
0
0
1
0
false
0
0
0
0
0.5
1
1
0
null
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
0
0
0
0
0
1
0
4
b5da3aa622fc6ae31ee50b900da3081886393cc7
215
py
Python
category_tree/helper.py
bharathramh92/shop
0c5800b2d36fbe1bfffaf555c3dc741d020aa5d7
[ "MIT" ]
1
2016-05-27T22:13:37.000Z
2016-05-27T22:13:37.000Z
category_tree/helper.py
bharathramh92/shop
0c5800b2d36fbe1bfffaf555c3dc741d020aa5d7
[ "MIT" ]
null
null
null
category_tree/helper.py
bharathramh92/shop
0c5800b2d36fbe1bfffaf555c3dc741d020aa5d7
[ "MIT" ]
null
null
null
from category_tree.categories import data def get_store_name_from_child(store_id): while data[store_id]['parent_category'] is not None: store_id = data[store_id]['parent_category'] return store_id
26.875
56
0.75814
33
215
4.575758
0.545455
0.231788
0.145695
0.225166
0.331126
0
0
0
0
0
0
0
0.15814
215
7
57
30.714286
0.834254
0
0
0
0
0
0.139535
0
0
0
0
0
0
1
0.2
false
0
0.2
0
0.6
0
0
0
0
null
1
0
1
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
0
0
0
0
1
0
0
4
b5f35bed476c5278cc37b5eb93da2b3545e9bfe8
957
py
Python
magmango/tests/test_potcar.py
nimalec/Magno
016bed1c2fb8275ac76ece3d0b7f39c4ebc45551
[ "MIT" ]
1
2021-01-08T18:22:13.000Z
2021-01-08T18:22:13.000Z
magmango/tests/test_potcar.py
nimalec/Magno
016bed1c2fb8275ac76ece3d0b7f39c4ebc45551
[ "MIT" ]
null
null
null
magmango/tests/test_potcar.py
nimalec/Magno
016bed1c2fb8275ac76ece3d0b7f39c4ebc45551
[ "MIT" ]
null
null
null
import unittest import os import numpy as np from pymatgen import Structure from magmango.calculation.potcar import PotcarSettings # # class PotcarSettingsTest(unittest.TestCase): # def setUp(self): # self.potcar_file_path = "data/potcar_pto" # #self.structure = Structure.from_file(self.poscar_file_path) # # def test_from_input(self): # #poscar_sett = PoscarSettings(self.structure, self.poscar_file_path) # #self.assertEqual(poscar_sett._structure, self.structure) # # # def test_from_file(self): # # poscar_infile_sett = PoscarSettings() # # poscar_infile_sett.poscar_from_file(self.poscar_file_path) # # struct = poscar_infile_sett._structure # # self.assertEqual(struct, self.structure) # # def test_update_settings(self): # poscar_infile_sett = PoscarSettings() # poscar_infile_sett.poscar_from_file(self.poscar_file_path) # poscar_sett = poscar_infile_sett._structure
35.444444
76
0.736677
116
957
5.732759
0.284483
0.105263
0.144361
0.108271
0.285714
0.285714
0.246617
0.246617
0.246617
0.246617
0
0
0.167189
957
26
77
36.807692
0.834379
0.810867
0
0
0
0
0
0
0
0
0
0
0
1
0
true
0
1
0
1
0
0
0
0
null
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
null
0
0
0
0
0
0
1
0
1
0
1
0
0
4
bd167da504ac1a51b81416178b209b951582f2de
583
py
Python
cpc/type/__init__.py
U-Ar/Cpresto
f723458fb237c9e3e8bc8a6afdf7c81858a65363
[ "BSD-3-Clause" ]
1
2021-05-09T07:10:19.000Z
2021-05-09T07:10:19.000Z
cpc/type/__init__.py
U-Ar/Cpresto
f723458fb237c9e3e8bc8a6afdf7c81858a65363
[ "BSD-3-Clause" ]
null
null
null
cpc/type/__init__.py
U-Ar/Cpresto
f723458fb237c9e3e8bc8a6afdf7c81858a65363
[ "BSD-3-Clause" ]
null
null
null
from .ArrayType import * from .ArrayTypeRef import * from .CompositeType import * from .FunctionType import * from .FunctionTypeRef import * from .IntegerType import * from .IntegerTypeRef import * from .NamedType import * from .ParamTypes import * from .PointerType import * from .PointerTypeRef import * from .StructType import * from .StructTypeRef import * from .Type import * from .TypeRef import * from .TypeTable import * from .UnionType import * from .UnionTypeRef import * from .UserType import * from .UserTypeRef import * from .VoidType import * from .VoidTypeRef import *
26.5
30
0.7753
66
583
6.848485
0.363636
0.464602
0
0
0
0
0
0
0
0
0
0
0.149228
583
22
31
26.5
0.91129
0
0
0
0
0
0
0
0
0
0
0
0
1
0
true
0
1
0
1
0
0
0
0
null
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
1
0
1
0
1
0
0
4
bd16c8b39601a36ca38158d3199f58ce464da6a0
41
py
Python
packages/speex.py
mhutch/bockbuild
0d989e2d0259d17d41a195f8d28b3844a4652e7b
[ "MIT" ]
null
null
null
packages/speex.py
mhutch/bockbuild
0d989e2d0259d17d41a195f8d28b3844a4652e7b
[ "MIT" ]
null
null
null
packages/speex.py
mhutch/bockbuild
0d989e2d0259d17d41a195f8d28b3844a4652e7b
[ "MIT" ]
null
null
null
XiphPackage ('speex', 'speex', '1.2rc1')
20.5
40
0.634146
5
41
5.2
0.8
0
0
0
0
0
0
0
0
0
0
0.081081
0.097561
41
1
41
41
0.621622
0
0
0
0
0
0.390244
0
0
0
0
0
0
1
0
true
0
0
0
0
0
1
1
0
null
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
1
0
0
0
0
0
0
4
bd2f0d561dd6a11311d27d509b7dfde5f4ee84a5
114
py
Python
portabletext_html/__init__.py
otovo/python-sanity-html
e445dd9d0f05f8cfe424112e568f37c36e663096
[ "Apache-2.0" ]
13
2021-04-14T11:19:20.000Z
2021-11-26T11:56:39.000Z
portabletext_html/__init__.py
otovo/python-sanity-html
e445dd9d0f05f8cfe424112e568f37c36e663096
[ "Apache-2.0" ]
25
2021-04-14T12:48:50.000Z
2021-11-29T08:11:14.000Z
portabletext_html/__init__.py
otovo/python-portabletext-html
31718a70db58afd143976bf0edfb42239f1800dc
[ "Apache-2.0" ]
null
null
null
from portabletext_html.renderer import PortableTextRenderer, render __all__ = ['PortableTextRenderer', 'render']
28.5
67
0.824561
10
114
8.9
0.8
0.58427
0
0
0
0
0
0
0
0
0
0
0.087719
114
3
68
38
0.855769
0
0
0
0
0
0.22807
0
0
0
0
0
0
1
0
false
0
0.5
0
0.5
0
1
0
0
null
1
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
0
0
1
0
0
0
0
4
1fa2167771953e0aff81f31c29233d456380649d
67
py
Python
latex/slides/resources/01_getting_started/present_main.py
AntonObersteiner/python-lessons
1d5536f0777853fba437566672cfb1d613984945
[ "CC-BY-4.0" ]
null
null
null
latex/slides/resources/01_getting_started/present_main.py
AntonObersteiner/python-lessons
1d5536f0777853fba437566672cfb1d613984945
[ "CC-BY-4.0" ]
null
null
null
latex/slides/resources/01_getting_started/present_main.py
AntonObersteiner/python-lessons
1d5536f0777853fba437566672cfb1d613984945
[ "CC-BY-4.0" ]
null
null
null
print(present("Py-Kurs", "am Di in der 5.", "dem FSR-Kurssystem"))
33.5
66
0.656716
12
67
3.666667
1
0
0
0
0
0
0
0
0
0
0
0.016949
0.119403
67
1
67
67
0.728814
0
0
0
0
0
0.597015
0
0
0
0
0
0
1
0
true
0
0
0
0
1
1
0
0
null
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
1
0
0
0
0
1
0
4
1ffbe3042328109603927698807569c875283801
180
py
Python
atividades/ex31.py
Fleen66/Python_exercises
fd05fdf1181da833a1a1bc9f4a476afc8f467977
[ "MIT" ]
null
null
null
atividades/ex31.py
Fleen66/Python_exercises
fd05fdf1181da833a1a1bc9f4a476afc8f467977
[ "MIT" ]
null
null
null
atividades/ex31.py
Fleen66/Python_exercises
fd05fdf1181da833a1a1bc9f4a476afc8f467977
[ "MIT" ]
null
null
null
distancia = int(input('Digite a distancia de sua viagem: ')) if distancia <= 200: preco = distancia * 0.50 print(preco) else: preco = distancia * 0.40 print(preco)
22.5
60
0.644444
25
180
4.64
0.64
0.241379
0.258621
0
0
0
0
0
0
0
0
0.065217
0.233333
180
7
61
25.714286
0.775362
0
0
0.285714
0
0
0.188889
0
0
0
0
0
0
1
0
false
0
0
0
0
0.285714
1
0
0
null
1
1
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
0
0
0
0
0
0
0
4
950b9bd680855e1bc01f2dffb96d063d03df4633
137
py
Python
plasmapy/utils/pytest_helpers/__init__.py
seanjunheng2/PlasmaPy
7b4e4aaf8b03d88b654456bca881329ade09e377
[ "BSD-2-Clause", "MIT", "BSD-2-Clause-Patent", "BSD-1-Clause", "BSD-3-Clause" ]
429
2016-10-31T19:40:32.000Z
2022-03-25T12:27:11.000Z
plasmapy/utils/pytest_helpers/__init__.py
RAJAGOPALAN-GANGADHARAN/PlasmaPy
6df9583cc47375687a07300c0aa11ba31634d770
[ "BSD-2-Clause", "MIT", "BSD-2-Clause-Patent", "BSD-1-Clause", "BSD-3-Clause" ]
1,400
2015-11-24T23:00:44.000Z
2022-03-30T21:03:25.000Z
plasmapy/utils/pytest_helpers/__init__.py
RAJAGOPALAN-GANGADHARAN/PlasmaPy
6df9583cc47375687a07300c0aa11ba31634d770
[ "BSD-2-Clause", "MIT", "BSD-2-Clause-Patent", "BSD-1-Clause", "BSD-3-Clause" ]
289
2015-11-24T18:54:57.000Z
2022-03-18T17:26:59.000Z
from plasmapy.utils.pytest_helpers.pytest_helpers import ( assert_can_handle_nparray, run_test, run_test_equivalent_calls, )
22.833333
58
0.79562
18
137
5.555556
0.777778
0.26
0
0
0
0
0
0
0
0
0
0
0.145985
137
5
59
27.4
0.854701
0
0
0
0
0
0
0
0
0
0
0
0.2
1
0
true
0
0.2
0
0.2
0
1
0
0
null
1
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
1
0
0
0
0
0
0
4
9512a6419412924d68f8311278ec236177bb738a
138
py
Python
api/models/province.py
krosben/api-ctan
01d5e29694e6f4e35fbe6797c319b109e5bc1c3f
[ "MIT" ]
null
null
null
api/models/province.py
krosben/api-ctan
01d5e29694e6f4e35fbe6797c319b109e5bc1c3f
[ "MIT" ]
6
2020-06-05T23:40:32.000Z
2021-06-10T19:03:25.000Z
api/models/province.py
krosben/api-ctan
01d5e29694e6f4e35fbe6797c319b109e5bc1c3f
[ "MIT" ]
null
null
null
from django.db import models class Province(models.Model): name = models.CharField(max_length=50, help_text="Name of the province")
23
76
0.76087
21
138
4.904762
0.809524
0
0
0
0
0
0
0
0
0
0
0.016807
0.137681
138
5
77
27.6
0.84874
0
0
0
0
0
0.144928
0
0
0
0
0
0
1
0
false
0
0.333333
0
1
0
1
0
0
null
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
null
0
0
0
0
0
0
0
0
1
0
1
0
0
4
1f17a8045e62dbb0dc195713bf778e0658496213
131
py
Python
src/pricehist/beanprice/alphavantage.py
chrisberkhout/pricehist
a54da85a6fae15e2f771e8612aed089407ec5c22
[ "MIT" ]
4
2021-09-15T03:23:10.000Z
2022-02-08T23:31:10.000Z
src/pricehist/beanprice/alphavantage.py
chrisberkhout/pricehist
a54da85a6fae15e2f771e8612aed089407ec5c22
[ "MIT" ]
null
null
null
src/pricehist/beanprice/alphavantage.py
chrisberkhout/pricehist
a54da85a6fae15e2f771e8612aed089407ec5c22
[ "MIT" ]
null
null
null
from pricehist import beanprice from pricehist.sources.alphavantage import AlphaVantage Source = beanprice.source(AlphaVantage())
26.2
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0.847328
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1f41eb6162eb883a714a301cdb2d992b3f4f957d
119
py
Python
examples/__init__.py
DiMoser/PyPinT
3cba394d0fd87055ab412d35fe6dbf4a3b0dbe73
[ "MIT" ]
null
null
null
examples/__init__.py
DiMoser/PyPinT
3cba394d0fd87055ab412d35fe6dbf4a3b0dbe73
[ "MIT" ]
null
null
null
examples/__init__.py
DiMoser/PyPinT
3cba394d0fd87055ab412d35fe6dbf4a3b0dbe73
[ "MIT" ]
null
null
null
# coding=utf-8 """Examples demonstrating usage of PyPinT .. moduleauthor:: Torbjörn Klatt <t.klatt@fz-juelich.de> """
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4
1f6aef11602a1e5873d6782928e3986a359ca69a
123
py
Python
carin/help.py
fiskurgit/Carin
41f5e8003d169f1f0454e7b674daf341d238f061
[ "Unlicense" ]
null
null
null
carin/help.py
fiskurgit/Carin
41f5e8003d169f1f0454e7b674daf341d238f061
[ "Unlicense" ]
null
null
null
carin/help.py
fiskurgit/Carin
41f5e8003d169f1f0454e7b674daf341d238f061
[ "Unlicense" ]
null
null
null
def show_help(): print("Carbon Intensity API Help") def show_bad_argument_help(): print("app -e generation")
11.181818
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0.674797
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123
4.647059
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10
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4
1f7102de5fec932b92f1cdaf56485f914e53929e
79
py
Python
pyup/settings.py
Callek/pyup
e29014320accdca2947b9e18c215d2144752081a
[ "MIT" ]
445
2016-01-14T09:19:26.000Z
2022-03-16T13:19:33.000Z
pyup/settings.py
Callek/pyup
e29014320accdca2947b9e18c215d2144752081a
[ "MIT" ]
387
2015-12-28T09:54:32.000Z
2022-01-04T00:45:00.000Z
pyup/settings.py
Callek/pyup
e29014320accdca2947b9e18c215d2144752081a
[ "MIT" ]
96
2016-01-19T19:25:00.000Z
2021-09-30T18:22:02.000Z
api_key = None def configure(key=None): global api_key api_key = key
11.285714
24
0.670886
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79
3.846154
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0.36
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79
6
25
13.166667
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4
1f907167fd216693dde972de5a46db5460599384
183
py
Python
src/emuvim/api/util/process_utils.py
RafaelSche/vim-emu
6503ba9fcbe13ca73c94d318157a1ba78ef26b5b
[ "Apache-2.0" ]
34
2016-09-05T06:11:12.000Z
2021-12-24T08:45:24.000Z
src/emuvim/api/util/process_utils.py
RafaelSche/vim-emu
6503ba9fcbe13ca73c94d318157a1ba78ef26b5b
[ "Apache-2.0" ]
89
2016-07-19T14:14:27.000Z
2020-01-09T07:19:45.000Z
src/emuvim/api/util/process_utils.py
RafaelSche/vim-emu
6503ba9fcbe13ca73c94d318157a1ba78ef26b5b
[ "Apache-2.0" ]
32
2016-07-19T14:58:06.000Z
2020-05-05T13:30:01.000Z
import logging import subprocess import time def wait_until(cmd): logging.debug('waiting for %s\n' % cmd) while subprocess.call(cmd, shell=True) != 0: time.sleep(1)
18.3
48
0.677596
27
183
4.555556
0.740741
0
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0.013699
0.202186
183
9
49
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1
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4
2f194f4c6d0e43f1d9af761e30aabf62de1d5d85
393
py
Python
tests/analysis/test_general.py
trumanw/ScaffoldGraph
a594e5c5effe6c5e45c0061a235ccbeb64e416f9
[ "MIT" ]
121
2019-12-12T15:30:16.000Z
2022-02-28T02:00:54.000Z
tests/analysis/test_general.py
trumanw/ScaffoldGraph
a594e5c5effe6c5e45c0061a235ccbeb64e416f9
[ "MIT" ]
8
2020-04-04T15:37:26.000Z
2021-11-17T07:30:31.000Z
tests/analysis/test_general.py
trumanw/ScaffoldGraph
a594e5c5effe6c5e45c0061a235ccbeb64e416f9
[ "MIT" ]
28
2019-12-16T11:58:53.000Z
2021-11-19T09:57:46.000Z
""" scaffoldgraph tests.analysis.test_general """ from scaffoldgraph.analysis import get_singleton_scaffolds, get_virtual_scaffolds from ..test_network import long_test_network def test_get_virtual_scaffolds(network): v = get_virtual_scaffolds(network) assert len(v) == 19 def test_get_singleton_scaffolds(network): s = get_singleton_scaffolds(network) assert len(s) == 3
23.117647
81
0.78626
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393
5.596154
0.384615
0.219931
0.216495
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0.132316
393
16
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4
2f19e1c9987607e703c57f23deb45035eb248b71
87
py
Python
izone/apps/secret/apps.py
shenjl/vmatrix
8f510d04005aa707cb6b296825f459f852cb59f6
[ "MIT" ]
null
null
null
izone/apps/secret/apps.py
shenjl/vmatrix
8f510d04005aa707cb6b296825f459f852cb59f6
[ "MIT" ]
2
2020-02-11T23:34:28.000Z
2020-06-05T17:33:09.000Z
izone/apps/secret/apps.py
selonsy/vmatrix
8f510d04005aa707cb6b296825f459f852cb59f6
[ "MIT" ]
null
null
null
from django.apps import AppConfig class SecretConfig(AppConfig): name = 'secret'
14.5
33
0.747126
10
87
6.5
0.9
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5
34
17.4
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0
0
4
2f79b110e6695d3ccede296e521acb7c60c79294
889
py
Python
src/backend/common/models/notifications/tests/verification_test.py
bovlb/the-blue-alliance
29389649d96fe060688f218d463e642dcebfd6cc
[ "MIT" ]
null
null
null
src/backend/common/models/notifications/tests/verification_test.py
bovlb/the-blue-alliance
29389649d96fe060688f218d463e642dcebfd6cc
[ "MIT" ]
null
null
null
src/backend/common/models/notifications/tests/verification_test.py
bovlb/the-blue-alliance
29389649d96fe060688f218d463e642dcebfd6cc
[ "MIT" ]
null
null
null
from backend.common.consts.notification_type import NotificationType from backend.common.models.notifications.verification import ( VerificationNotification, ) def test_str(): notification = VerificationNotification("https://thebluealliance.com/", "password") assert "{'verification_key': " in str(notification) def test_type(): assert VerificationNotification._type() == NotificationType.VERIFICATION def test_data_payload(): notification = VerificationNotification("https://thebluealliance.com/", "password") assert notification.data_payload is None def test_webhook_message_data(): notification = VerificationNotification("https://thebluealliance.com/", "password") assert notification.webhook_message_data is not None verification_key = notification.webhook_message_data.get("verification_key", None) assert verification_key is not None
34.192308
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889
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4
85d564c27e33a35fe1a491c27c616e6e1a78f815
2,604
py
Python
DailyProgrammer/DP20160818B.py
DayGitH/Python-Challenges
bc32f1332a92fcc2dfa6f5ea4d95f8a8d64c3edf
[ "MIT" ]
2
2020-12-23T18:59:22.000Z
2021-04-14T13:16:09.000Z
DailyProgrammer/DP20160818B.py
DayGitH/Python-Challenges
bc32f1332a92fcc2dfa6f5ea4d95f8a8d64c3edf
[ "MIT" ]
null
null
null
DailyProgrammer/DP20160818B.py
DayGitH/Python-Challenges
bc32f1332a92fcc2dfa6f5ea4d95f8a8d64c3edf
[ "MIT" ]
null
null
null
""" [2016-08-18] Challenge #279 [Intermediate] Text Reflow https://www.reddit.com/r/dailyprogrammer/comments/4ybbcz/20160818_challenge_279_intermediate_text_reflow/ #Description: Text reflow means to break up lines of text so that they fit within a certain width. It is useful in e.g. mobile browsers. When you zoom in on a web page the lines will become too long to fit the width of the screen, unless the text is broken up into shorter lines. #Input: You will be given a text with a maximum line width of 80 characters. #Output: Produce the same text with a maximum line width of 40 characters #Challenge Input: In the beginning God created the heavens and the earth. Now the earth was formless and empty, darkness was over the surface of the deep, and the Spirit of God was hovering over the waters. And God said, "Let there be light," and there was light. God saw that the light was good, and he separated the light from the darkness. God called the light "day," and the darkness he called "night." And there was evening, and there was morning - the first day. #Challenge Output: In the beginning God created the heavens and the earth. Now the earth was formless and empty, darkness was over the surface of the deep, and the Spirit of God was hovering over the waters. And God said, "Let there be light," and there was light. God saw that the light was good, and he separated the light from the darkness. God called the light "day," and the darkness he called "night." And there was evening, and there was morning - the first day. #Bonus: Let's get rid of the jagged right margin of the text and make the output prettier. Output the text with full justification; Adjusting the word spacing so that the text is flush against both the left and the right margin. #Bonus Output: In the beginning God created the heavens and the earth. Now the earth was formless and empty, darkness was over the surface of the deep, and the Spirit of God was hovering over the waters. And God said, "Let there be light," and there was light. God saw that the light was good, and he separated the light from the darkness. God called the light "day," and the darkness he called "night." And there was evening, and there was morning - the first day. #Finally This challenge is posted by /u/slampropp Also have a good challenge idea? Consider submitting it to /r/dailyprogrammer_ideas """ def main(): pass if __name__ == "__main__": main()
40.061538
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0
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4
c8063918c58e85541c9a3697d5b6790d29d944d4
103
py
Python
chapter2/chapter2_type_hints_01.py
GoodMonsters/Building-Data-Science-Applications-with-FastAPI
d2218d225c5b93723ecf46c19619ed5d3f2473e6
[ "MIT" ]
107
2021-03-26T20:18:51.000Z
2022-03-26T03:38:08.000Z
chapter2/chapter2_type_hints_01.py
GoodMonsters/Building-Data-Science-Applications-with-FastAPI
d2218d225c5b93723ecf46c19619ed5d3f2473e6
[ "MIT" ]
4
2021-06-09T08:48:21.000Z
2021-12-27T09:04:43.000Z
chapter2/chapter2_type_hints_01.py
GoodMonsters/Building-Data-Science-Applications-with-FastAPI
d2218d225c5b93723ecf46c19619ed5d3f2473e6
[ "MIT" ]
58
2021-03-12T20:51:19.000Z
2022-03-27T15:49:49.000Z
def greeting(name: str) -> str: return f"Hello, {name}" print(greeting("John")) # "Hello, John"
17.166667
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4
c81398777499e20a3165a99b2f64b68aeafcfd64
54
py
Python
emma.py
patrickdijusto/python.hub
776a6a843dbd8895c414dcb8e7730c8cb2f3894d
[ "MIT" ]
null
null
null
emma.py
patrickdijusto/python.hub
776a6a843dbd8895c414dcb8e7730c8cb2f3894d
[ "MIT" ]
null
null
null
emma.py
patrickdijusto/python.hub
776a6a843dbd8895c414dcb8e7730c8cb2f3894d
[ "MIT" ]
null
null
null
def fun(name, age=20): print(name, age) fun('Emma')
10.8
22
0.62963
10
54
3.4
0.7
0.411765
0
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0.148148
54
4
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0
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0
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4
c84446517bb1f74fa114d36c91ba50e5edd245d3
125,439
py
Python
scripts/ui/images_rc.py
ROOSTER-fleet-management/multi_robot_sim
c5f50b271e7c21d95a843ede1d9227720974764a
[ "Apache-2.0" ]
1
2021-02-25T19:11:03.000Z
2021-02-25T19:11:03.000Z
scripts/ui/images_rc.py
ROOSTER-fleet-management/multi_robot_sim
c5f50b271e7c21d95a843ede1d9227720974764a
[ "Apache-2.0" ]
null
null
null
scripts/ui/images_rc.py
ROOSTER-fleet-management/multi_robot_sim
c5f50b271e7c21d95a843ede1d9227720974764a
[ "Apache-2.0" ]
null
null
null
# -*- coding: utf-8 -*- # Resource object code # # Created by: The Resource Compiler for PyQt4 (Qt v4.8.7) # # WARNING! All changes made in this file will be lost! from PyQt4 import QtCore qt_resource_data = "\ \x00\x00\x05\x96\ \x89\ \x50\x4e\x47\x0d\x0a\x1a\x0a\x00\x00\x00\x0d\x49\x48\x44\x52\x00\ \x00\x00\x18\x00\x00\x00\x18\x08\x06\x00\x00\x00\xe0\x77\x3d\xf8\ \x00\x00\x05\x5d\x49\x44\x41\x54\x78\xda\x95\x96\x69\x4c\x54\x57\ \x14\xc7\xff\xf7\xbd\x37\xf3\x66\x65\x66\x80\x8a\xa0\x42\xb1\x0c\ \x28\x08\x28\x0a\x55\x03\x56\xfd\x60\xda\x6a\xa3\x69\xb4\x19\xd2\ \x98\xa6\x68\xfb\xa1\xbb\xdd\xd2\x6a\x93\x7e\xeb\x87\xda\x34\xa6\ \x36\x26\xd5\x82\xda\x46\x99\x44\x53\x63\x6c\x6c\x62\x23\xae\x31\ \xad\x5a\x97\x28\x08\x6e\xd0\x61\x5f\xc2\xc0\x2c\x0c\xcc\x5b\x6e\ \xcf\x1b\x90\x92\x8a\x45\x4f\x66\xf2\x26\xf3\xe6\x9d\xdf\xfd\x9f\ \xff\xb9\xe7\x0e\xc3\x23\x22\x32\xa7\xb8\x1a\x29\xee\x2a\x26\xcb\ \xf8\xbf\xe0\x8a\x02\xf4\x06\x6b\x1c\x8d\xd7\x36\x4d\x76\x9f\x4d\ \xf6\x65\x38\xb7\xa8\x56\x2c\xce\xf3\x99\xde\x5c\x03\x74\x06\x00\ \x81\x8d\xff\x92\x89\x0c\x5c\x4b\x7c\x00\x74\x15\x30\x49\x88\xef\ 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\x00\x6f\x00\x64\x00\x69\x00\x66\x00\x79\x00\x2e\x00\x70\x00\x6e\x00\x67\ \x00\x10\ \x09\x29\x3d\x67\ \x00\x4e\ \x00\x65\x00\x77\x00\x20\x00\x64\x00\x6f\x00\x63\x00\x75\x00\x6d\x00\x65\x00\x6e\x00\x74\x00\x2e\x00\x70\x00\x6e\x00\x67\ \x00\x08\ \x08\xc8\x5c\x67\ \x00\x53\ \x00\x61\x00\x76\x00\x65\x00\x2e\x00\x70\x00\x6e\x00\x67\ \x00\x0a\ \x0a\xcc\xfb\x07\ \x00\x46\ \x00\x6f\x00\x6c\x00\x64\x00\x65\x00\x72\x00\x2e\x00\x70\x00\x6e\x00\x67\ \x00\x15\ \x06\x50\xf8\x47\ \x00\x4c\ \x00\x61\x00\x75\x00\x6e\x00\x63\x00\x68\x00\x20\x00\x49\x00\x63\x00\x6f\x00\x6e\x00\x20\x00\x4d\x00\x75\x00\x6c\x00\x74\x00\x69\ \x00\x2e\x00\x70\x00\x6e\x00\x67\ \x00\x09\ \x06\xc7\xd8\x67\ \x00\x41\ \x00\x62\x00\x6f\x00\x75\x00\x74\x00\x2e\x00\x70\x00\x6e\x00\x67\ " qt_resource_struct = "\ \x00\x00\x00\x00\x00\x02\x00\x00\x00\x01\x00\x00\x00\x01\ \x00\x00\x00\x00\x00\x02\x00\x00\x00\x0f\x00\x00\x00\x02\ \x00\x00\x00\xc0\x00\x00\x00\x00\x00\x01\x00\x00\x26\x66\ \x00\x00\x00\xa6\x00\x00\x00\x00\x00\x01\x00\x00\x20\xb2\ \x00\x00\x00\x54\x00\x00\x00\x00\x00\x01\x00\x00\x0d\xc6\ \x00\x00\x01\x46\x00\x00\x00\x00\x00\x01\x00\x00\x3c\xa1\ \x00\x00\x00\x10\x00\x00\x00\x00\x00\x01\x00\x00\x00\x00\ \x00\x00\x00\x3c\x00\x00\x00\x00\x00\x01\x00\x00\x08\xa0\ \x00\x00\x01\x76\x00\x00\x00\x00\x00\x01\x00\x00\x6e\x73\ \x00\x00\x00\x7a\x00\x00\x00\x00\x00\x01\x00\x00\x17\x95\ \x00\x00\x00\x28\x00\x00\x00\x00\x00\x01\x00\x00\x05\x9a\ \x00\x00\x01\x16\x00\x00\x00\x00\x00\x01\x00\x00\x33\x1c\ \x00\x00\x00\xf0\x00\x00\x00\x00\x00\x01\x00\x00\x2e\x9f\ \x00\x00\x01\x2c\x00\x00\x00\x00\x00\x01\x00\x00\x38\xb0\ \x00\x00\x00\x90\x00\x00\x00\x00\x00\x01\x00\x00\x1b\xca\ \x00\x00\x00\x66\x00\x00\x00\x00\x00\x01\x00\x00\x13\xf6\ \x00\x00\x00\xd6\x00\x00\x00\x00\x00\x01\x00\x00\x2a\xea\ " def qInitResources(): QtCore.qRegisterResourceData(0x01, qt_resource_struct, qt_resource_name, qt_resource_data) def qCleanupResources(): QtCore.qUnregisterResourceData(0x01, qt_resource_struct, qt_resource_name, qt_resource_data) qInitResources()
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3.005674
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0.036416
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0
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4
c856f5773044e5156600553546b88ed62d7ca1dd
235
py
Python
trip_distributer/admin.py
princegoyani/TRIP-DISTRIBUTER
22793ae603508c9388d03f044759dc925462595a
[ "BSD-3-Clause" ]
null
null
null
trip_distributer/admin.py
princegoyani/TRIP-DISTRIBUTER
22793ae603508c9388d03f044759dc925462595a
[ "BSD-3-Clause" ]
null
null
null
trip_distributer/admin.py
princegoyani/TRIP-DISTRIBUTER
22793ae603508c9388d03f044759dc925462595a
[ "BSD-3-Clause" ]
null
null
null
from django.contrib import admin from .models import User , Trip, Notification , Spending # Register your models here. admin.site.register(User) admin.site.register(Trip) admin.site.register(Notification) admin.site.register(Spending)
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235
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4
c867e56be1f71eb568a6e918ed29a6d7c65c450d
58
py
Python
mean-var-std/main.py
PedroEduardoSS/Data-Analisys-projects
f06c2d7091a9a61509525019f2f0375e21698f6a
[ "MIT" ]
null
null
null
mean-var-std/main.py
PedroEduardoSS/Data-Analisys-projects
f06c2d7091a9a61509525019f2f0375e21698f6a
[ "MIT" ]
null
null
null
mean-var-std/main.py
PedroEduardoSS/Data-Analisys-projects
f06c2d7091a9a61509525019f2f0375e21698f6a
[ "MIT" ]
null
null
null
from mean_var_std import * calculate([0,1,2,3,4,5,6,7,8])
19.333333
30
0.689655
15
58
2.533333
1
0
0
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0.169811
0.086207
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3
30
19.333333
0.54717
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0
1
0
0
0
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4
c0712de2126b7958548be086996c8304d5bf2f45
89
py
Python
Project/Connect/apps.py
AashishKhanal69/PeakyBlinders_ADC7_PartII
a4474c02be4ee8f8405b51df2f1d215e56ac192d
[ "bzip2-1.0.6" ]
null
null
null
Project/Connect/apps.py
AashishKhanal69/PeakyBlinders_ADC7_PartII
a4474c02be4ee8f8405b51df2f1d215e56ac192d
[ "bzip2-1.0.6" ]
null
null
null
Project/Connect/apps.py
AashishKhanal69/PeakyBlinders_ADC7_PartII
a4474c02be4ee8f8405b51df2f1d215e56ac192d
[ "bzip2-1.0.6" ]
null
null
null
from django.apps import AppConfig class ConnectConfig(AppConfig): name = 'Connect'
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89
6.7
0.9
0
0
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0
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0.168539
89
5
34
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4
c074c692de4483f97d3f233f58a66ad3a9239b2d
1,337
py
Python
src/scs_core/osio/data/message_body.py
seoss/scs_core
0d4323c5697a39eb44a887f179ba5dca3716c1d2
[ "MIT" ]
3
2019-03-12T01:59:58.000Z
2020-09-12T07:27:42.000Z
src/scs_core/osio/data/message_body.py
seoss/scs_core
0d4323c5697a39eb44a887f179ba5dca3716c1d2
[ "MIT" ]
1
2018-04-20T07:58:38.000Z
2021-03-27T08:52:45.000Z
src/scs_core/osio/data/message_body.py
seoss/scs_core
0d4323c5697a39eb44a887f179ba5dca3716c1d2
[ "MIT" ]
4
2017-09-29T13:08:43.000Z
2019-10-09T09:13:58.000Z
""" Created on 7 Nov 2016 @author: Bruno Beloff (bruno.beloff@southcoastscience.com) example: 25 June 2016 17:44:28 BST: {"datum":{"conc":92,"dens":184},"measured-at":"2016-06-25T17:41:01+01:00"} """ from collections import OrderedDict from scs_core.data.json import JSONable # -------------------------------------------------------------------------------------------------------------------- class MessageBody(JSONable): """ classdocs """ # ---------------------------------------------------------------------------------------------------------------- def __init__(self, data): """ Constructor """ self.__data = data # string # ---------------------------------------------------------------------------------------------------------------- def as_json(self): jdict = OrderedDict() jdict['data'] = self.data return jdict # ---------------------------------------------------------------------------------------------------------------- @property def data(self): return self.__data # ---------------------------------------------------------------------------------------------------------------- def __str__(self, *args, **kwargs): return "MessageBody:{data:%s}" % self.data
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1
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4
c07be394b73091661999efe65e37d5d6f073209b
4,205
py
Python
src/evaluation/regression.py
lyonva/Nue
90680de00b0c76f6bfdbed71b785671e7c3a3f54
[ "Apache-2.0" ]
null
null
null
src/evaluation/regression.py
lyonva/Nue
90680de00b0c76f6bfdbed71b785671e7c3a3f54
[ "Apache-2.0" ]
null
null
null
src/evaluation/regression.py
lyonva/Nue
90680de00b0c76f6bfdbed71b785671e7c3a3f54
[ "Apache-2.0" ]
null
null
null
from evaluation import MetricScorer from .formulas import mar, sa, sd, sdar, effect_size, mmre, mdmre, pred25, pred40 from baseline import MARP0 class MAR(MetricScorer): def setConstants(self): self.name = "mar" self.problem = "regression" self.greater_is_better = False self.lo = 0 self.hi = 20000 # Not really, but upped bound is infinity self.baseline = MARP0 self.unifeature = False self.composite = None def _score_func(self, y_true, y_pred, X=None, estimator=None): return mar(self, y_true, y_pred) class SDAR(MetricScorer): def setConstants(self): self.name = "sdar" self.problem = "regression" self.greater_is_better = False self.lo = 0 self.hi = 200000 # Not really, but upped bound is infinity self.baseline = MARP0 self.unifeature = False self.composite = None def _score_func(self, y_true, y_pred, X=None, estimator=None): return sdar(self, y_true, y_pred) class SA(MetricScorer): def setConstants(self): self.name = "sa" self.problem = "regression" self.greater_is_better = True self.lo = 0 self.hi = 1 # Not really, but upped bound is infinity self.baseline = MARP0 self.unifeature = False self.composite = None def _score_func(self, y_true, y_pred, X=None, estimator=None): return sa(self, y_true, y_pred) class SD(MetricScorer): def setConstants(self): self.name = "sd" self.problem = "regression" self.greater_is_better = True self.lo = 0 self.hi = 1 # Not really, but upped bound is infinity self.baseline = MARP0 self.unifeature = False self.composite = None def _score_func(self, y_true, y_pred, X=None, estimator=None): return sd(self, y_true, y_pred) class EFFECTSIZE(MetricScorer): def setConstants(self): self.name = "effect size" self.problem = "regression" self.greater_is_better = True self.lo = 0 self.hi = 1 # Not really, but upped bound is infinity self.baseline = MARP0 self.unifeature = False self.composite = None def _score_func(self, y_true, y_pred, X=None, estimator=None): return effect_size(self, y_true, y_pred) class MMRE(MetricScorer): def setConstants(self): self.name = "mmre" self.problem = "regression" self.greater_is_better = False self.lo = 0 self.hi = 20000 # Not really, but upped bound is infinity self.baseline = MARP0 self.unifeature = False self.composite = None def _score_func(self, y_true, y_pred, X=None, estimator=None): return mmre(self, y_true, y_pred) class MdMRE(MetricScorer): def setConstants(self): self.name = "mdmre" self.problem = "regression" self.greater_is_better = False self.lo = 0 self.hi = 20000 # Not really, but upped bound is infinity self.baseline = MARP0 self.unifeature = False self.composite = None def _score_func(self, y_true, y_pred, X=None, estimator=None): return mdmre(self, y_true, y_pred) class PRED25(MetricScorer): def setConstants(self): self.name = "pred25" self.problem = "regression" self.greater_is_better = True self.lo = 0 self.hi = 1 # Not really, but upped bound is infinity self.baseline = MARP0 self.unifeature = False self.composite = None def _score_func(self, y_true, y_pred, X=None, estimator=None): return pred25(self, y_true, y_pred) class PRED40(MetricScorer): def setConstants(self): self.name = "pred40" self.problem = "regression" self.greater_is_better = True self.lo = 0 self.hi = 1 # Not really, but upped bound is infinity self.baseline = MARP0 self.unifeature = False self.composite = None def _score_func(self, y_true, y_pred, X=None, estimator=None): return pred40(self, y_true, y_pred)
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4
c0a387ecd74cdd18e1dae76a145f773dea75a7b7
262
py
Python
src/syntax/statements/__init__.py
andaviaco/tronido
08a1619a0e8c10f35ed6710eb6e1f72dc5b87421
[ "MIT" ]
null
null
null
src/syntax/statements/__init__.py
andaviaco/tronido
08a1619a0e8c10f35ed6710eb6e1f72dc5b87421
[ "MIT" ]
null
null
null
src/syntax/statements/__init__.py
andaviaco/tronido
08a1619a0e8c10f35ed6710eb6e1f72dc5b87421
[ "MIT" ]
null
null
null
from .ifstat import IfStat from .returnstat import ReturnStat from .whilestat import WhileStat from .breakstat import BreakStat from .switchstat import SwitchStat from .casestat import CaseStat from .forstat import ForStat from .continuestat import ContinueStat
29.111111
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262
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8
39
32.75
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c0a82c8edb06be2ad657e3733a1e2ee863cd955f
32
py
Python
resolwe/rest/__init__.py
plojyon/resolwe
1bee6f0860fdd087534adf1680e9350d79ab97cf
[ "Apache-2.0" ]
27
2015-12-07T18:29:12.000Z
2022-03-16T08:01:47.000Z
resolwe/rest/__init__.py
plojyon/resolwe
1bee6f0860fdd087534adf1680e9350d79ab97cf
[ "Apache-2.0" ]
681
2015-12-01T11:52:24.000Z
2022-03-21T07:43:37.000Z
resolwe/rest/__init__.py
plojyon/resolwe
1bee6f0860fdd087534adf1680e9350d79ab97cf
[ "Apache-2.0" ]
28
2015-12-01T08:32:57.000Z
2021-12-14T00:04:16.000Z
"""Resolwe REST API helpers."""
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4
c0d6aa4598374762a450e52b8af29f49f301387d
105
py
Python
oyster/celeryconfig.py
jamesturk/oyster
c6e93fdd48ed1ead1ea5b163c6ba9cf227f831ae
[ "BSD-3-Clause" ]
1
2020-09-03T08:10:43.000Z
2020-09-03T08:10:43.000Z
oyster/celeryconfig.py
jamesturk/oyster
c6e93fdd48ed1ead1ea5b163c6ba9cf227f831ae
[ "BSD-3-Clause" ]
null
null
null
oyster/celeryconfig.py
jamesturk/oyster
c6e93fdd48ed1ead1ea5b163c6ba9cf227f831ae
[ "BSD-3-Clause" ]
null
null
null
from oyster.conf import settings CELERY_IMPORTS = ['oyster.tasks'] + list(settings.CELERY_TASK_MODULES)
26.25
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4
c0d85d28668ecd7ceba3957da1e2fcc7a48d395d
83
py
Python
kwueBackend/kwue/apps.py
bounswe/bounswe2016group4
cbc8201aa86049b81f20ef44ee37eb065a469d46
[ "Apache-2.0" ]
6
2016-02-14T18:04:48.000Z
2016-12-18T20:09:15.000Z
kwueBackend/kwue/apps.py
bounswe/bounswe2016group4
cbc8201aa86049b81f20ef44ee37eb065a469d46
[ "Apache-2.0" ]
113
2016-02-14T18:06:57.000Z
2021-06-10T17:57:12.000Z
kwueBackend/kwue/apps.py
bounswe/bounswe2016group4
cbc8201aa86049b81f20ef44ee37eb065a469d46
[ "Apache-2.0" ]
1
2017-02-15T18:48:55.000Z
2017-02-15T18:48:55.000Z
from django.apps import AppConfig class KwueConfig(AppConfig): name = 'kwue'
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34
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4
8d0629eab200e0d853386685fca3ce29b3fc85c5
295
py
Python
models/account.py
Tingesplatform/tokenomics
b541a54b1709a1282c5133e731b26a6ca05ac901
[ "MIT" ]
2
2021-01-12T04:44:06.000Z
2022-03-15T23:34:41.000Z
models/account.py
Tingesplatform/tokenomics
b541a54b1709a1282c5133e731b26a6ca05ac901
[ "MIT" ]
5
2019-01-14T07:17:34.000Z
2021-06-01T23:38:58.000Z
models/account.py
Tingesplatform/tokenomics
b541a54b1709a1282c5133e731b26a6ca05ac901
[ "MIT" ]
2
2019-01-11T17:07:48.000Z
2022-03-03T17:26:41.000Z
import os class Account: ACCOUNTS_STORAGE = {} """Ethereum account""" def __init__(self): self.address = "0x" + os.urandom(20).hex() self.ACCOUNTS_STORAGE[self.address] = self def __str__(self): return f'Account {self.address}' __repr__ = __str__
19.666667
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295
4.823529
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1
1
0
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4
23944dce2a5292a5f4dccddbeb6c459b0db88881
821
py
Python
punk/aggregator/aggregateByDateTimeCategory.py
NewKnowledge/punk
53007a38433023f9a9f5cf39786b1c5a28f1f996
[ "MIT" ]
2
2017-08-23T16:58:01.000Z
2020-07-03T01:53:34.000Z
punk/aggregator/aggregateByDateTimeCategory.py
NewKnowledge/punk
53007a38433023f9a9f5cf39786b1c5a28f1f996
[ "MIT" ]
11
2017-08-18T17:19:21.000Z
2022-03-18T15:54:40.000Z
punk/aggregator/aggregateByDateTimeCategory.py
NewKnowledge/punk
53007a38433023f9a9f5cf39786b1c5a28f1f996
[ "MIT" ]
2
2017-09-11T19:38:04.000Z
2020-05-28T00:58:05.000Z
import pandas as pd from typing import List, NamedTuple from .timeseries import agg_by_category_by_date from primitive_interfaces.base import PrimitiveBase class AggregateByDateTimeCategory(PrimitiveBase[pd.DataFrame, List[str]]): __author__ = 'distil' def __init__(self): pass def get_params(self) -> dict: return {} def set_params(self, params: dict) -> None: self.params = params def get_call_metadata(self) -> {}: return {} def fit(self): pass def produce(self, inputs: pd.DataFrame, values: List[str] = [], groupby : List[str] = [], datetime=None, intervals=None, aggregation=None): return agg_by_category_by_date(inputs, datetime, values, groupby, interval=intervals, agg=aggregation)
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4
23971993e9893cd5f385730b84276166fd285f88
184
py
Python
printshops/apps.py
amid-africa/photoorder
407cf58b3dbd3e2144a8533f489889295f946776
[ "MIT" ]
null
null
null
printshops/apps.py
amid-africa/photoorder
407cf58b3dbd3e2144a8533f489889295f946776
[ "MIT" ]
null
null
null
printshops/apps.py
amid-africa/photoorder
407cf58b3dbd3e2144a8533f489889295f946776
[ "MIT" ]
null
null
null
from django.apps import AppConfig class PrintshopsConfig(AppConfig): name = 'printshops' """ Register our signals """ def ready(self): import printshops.signals
18.4
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184
6.631579
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184
9
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4
23a0582a156a5116f9a3e62beef47135533e30c9
203
py
Python
tests/decisionreqdef/test_module.py
fasfoxcom/pycamunda
6bbebe1db40ce9fb29a9d420366e6dca1892df7b
[ "MIT" ]
null
null
null
tests/decisionreqdef/test_module.py
fasfoxcom/pycamunda
6bbebe1db40ce9fb29a9d420366e6dca1892df7b
[ "MIT" ]
null
null
null
tests/decisionreqdef/test_module.py
fasfoxcom/pycamunda
6bbebe1db40ce9fb29a9d420366e6dca1892df7b
[ "MIT" ]
null
null
null
# -*- coding: utf-8 -*- def test_all_contains_only_valid_names(): import pycamunda.decisionreqdef for name in pycamunda.decisionreqdef.__all__: getattr(pycamunda.decisionreqdef, name)
22.555556
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6.086957
0.73913
0.492857
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8
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25.375
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4
23bd7796ce5dbbe94cd644365987adb6f71698db
191
py
Python
mtga_event_prize_level.py
everybodyeverybody/mtga_earnings_calculator
4be67e37299c122eba110eb07308426d8078c645
[ "MIT" ]
null
null
null
mtga_event_prize_level.py
everybodyeverybody/mtga_earnings_calculator
4be67e37299c122eba110eb07308426d8078c645
[ "MIT" ]
null
null
null
mtga_event_prize_level.py
everybodyeverybody/mtga_earnings_calculator
4be67e37299c122eba110eb07308426d8078c645
[ "MIT" ]
null
null
null
#!/usr/bin/env python3.7 from decimal import Decimal from collections import namedtuple EventPrizeLevel = namedtuple( "EventPrizeLevel", ["packs", "gems", "gold"], defaults=[0, 0, 0], )
23.875
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7
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4
23d1de5c4b1de87a253332547b768f99517edb24
326
py
Python
lfs/core/admin.py
restless/django-lfs
4058f9d45b416ef2e8c28a87856ea0f1550b523d
[ "BSD-3-Clause" ]
1
2020-02-26T03:07:39.000Z
2020-02-26T03:07:39.000Z
lfs/core/admin.py
mxins/django-lfs
bf42ed80ce0e1ec96db6ab985adcc614ea79dfc8
[ "BSD-3-Clause" ]
null
null
null
lfs/core/admin.py
mxins/django-lfs
bf42ed80ce0e1ec96db6ab985adcc614ea79dfc8
[ "BSD-3-Clause" ]
null
null
null
# django imports from django.contrib import admin # lfs imports from lfs.core.models import Action from lfs.core.models import ActionGroup from lfs.core.models import Shop from lfs.core.models import Country admin.site.register(Shop) admin.site.register(Action) admin.site.register(ActionGroup) admin.site.register(Country)
23.285714
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0.254682
0.344569
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23ecadb81a5ec6b2f9e0c728e946a750d6f1f36e
93
py
Python
modules/tankshapes/__init__.py
bullseyestudio/guns-game
3104c44e43ea7f000f6b9e756d622f98110d0a21
[ "Apache-2.0", "BSD-3-Clause" ]
null
null
null
modules/tankshapes/__init__.py
bullseyestudio/guns-game
3104c44e43ea7f000f6b9e756d622f98110d0a21
[ "Apache-2.0", "BSD-3-Clause" ]
1
2018-11-21T04:50:57.000Z
2018-11-21T04:50:57.000Z
modules/tankshapes/__init__.py
bullseyestudio/guns-game
3104c44e43ea7f000f6b9e756d622f98110d0a21
[ "Apache-2.0", "BSD-3-Clause" ]
null
null
null
""" Tank shapes package for Guns. This init file marks the package as a usable module. """
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4
23edadd6c1315ae3bef9cd266a3d92857c911930
229
py
Python
tfbs_footprinter-runner.py
thirtysix/TFBS_footprinting
f627e0a5186e00fe166dad46b21d9b2742b51760
[ "MIT" ]
null
null
null
tfbs_footprinter-runner.py
thirtysix/TFBS_footprinting
f627e0a5186e00fe166dad46b21d9b2742b51760
[ "MIT" ]
null
null
null
tfbs_footprinter-runner.py
thirtysix/TFBS_footprinting
f627e0a5186e00fe166dad46b21d9b2742b51760
[ "MIT" ]
null
null
null
#!/usr/bin/env python # -*- coding: utf-8 -*- """Convenience wrapper for running tfbs_footprinter directly from source tree.""" from tfbs_footprinter.tfbs_footprinter import main if __name__ == '__main__': main()
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9b019d69f7dc7afa332c3b317d1c035ebf327b40
94
py
Python
dive_sites/apps.py
Scuba-Chris/dive_site_api
9c5f2a26e6c8a1e2eeaf6cd1b4174e764f83a6b6
[ "MIT" ]
null
null
null
dive_sites/apps.py
Scuba-Chris/dive_site_api
9c5f2a26e6c8a1e2eeaf6cd1b4174e764f83a6b6
[ "MIT" ]
7
2020-06-05T21:03:39.000Z
2021-09-22T18:33:33.000Z
dive_sites/apps.py
Scuba-Chris/dive_site_api
9c5f2a26e6c8a1e2eeaf6cd1b4174e764f83a6b6
[ "MIT" ]
null
null
null
from django.apps import AppConfig class DiveSitesConfig(AppConfig): name = 'dive_sites'
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6.454545
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5
34
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4
9b076c62dfd81be9905f0f82e953e93e7d7c02e5
313
py
Python
covid19_id/pemeriksaan_vaksinasi/vaksinasi_harian.py
hexatester/covid19-id
8d8aa3f9092a40461a308f4db054ab4f95374849
[ "MIT" ]
null
null
null
covid19_id/pemeriksaan_vaksinasi/vaksinasi_harian.py
hexatester/covid19-id
8d8aa3f9092a40461a308f4db054ab4f95374849
[ "MIT" ]
null
null
null
covid19_id/pemeriksaan_vaksinasi/vaksinasi_harian.py
hexatester/covid19-id
8d8aa3f9092a40461a308f4db054ab4f95374849
[ "MIT" ]
null
null
null
import attr from covid19_id.utils import ValueInt @attr.dataclass(slots=True) class VaksinasiHarian: key_as_string: str key: int doc_count: int jumlah_vaksinasi_2: ValueInt jumlah_vaksinasi_1: ValueInt jumlah_jumlah_vaksinasi_1_kum: ValueInt jumlah_jumlah_vaksinasi_2_kum: ValueInt
20.866667
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14
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4
9b26d22dac1fa85ff57a7518cc0afd23693491bf
111
py
Python
adonai/user/api/queries.py
Egnod/adonai
b365d81c826fd7b626c9145154ee0136ea73fac1
[ "MIT" ]
6
2020-01-20T20:02:09.000Z
2020-02-24T08:40:23.000Z
adonai/user/api/queries.py
Egnod/adonai
b365d81c826fd7b626c9145154ee0136ea73fac1
[ "MIT" ]
null
null
null
adonai/user/api/queries.py
Egnod/adonai
b365d81c826fd7b626c9145154ee0136ea73fac1
[ "MIT" ]
null
null
null
from .user.queries import UserQuery # isort:skip from .user_group.queries import UserGroupQuery # isort:skip
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4
f19bffe1d8db01545aa2bac87ec675c56149bef9
195
py
Python
kali/comandosOs.py
NandoDev-lab/AssistenteEmPython
3d6e7c4abef39154e710e82807d0534586294c1c
[ "MIT" ]
1
2021-06-30T18:08:42.000Z
2021-06-30T18:08:42.000Z
kali/comandosOs.py
NandoDev-lab/AssistenteEmPython
3d6e7c4abef39154e710e82807d0534586294c1c
[ "MIT" ]
null
null
null
kali/comandosOs.py
NandoDev-lab/AssistenteEmPython
3d6e7c4abef39154e710e82807d0534586294c1c
[ "MIT" ]
null
null
null
import sys import os import subprocess import pyautogui import time subprocess.run("C:/Windows/system32/cmd.exe") time.sleep(3) pyautogui.typewrite("python")
8.478261
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23
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4
f1d17c8b8c557bcd6739e64fad4920995078f733
160
py
Python
7KYU/words_to_sentence.py
yaznasivasai/python_codewars
25493591dde4649dc9c1ec3bece8191a3bed6818
[ "MIT" ]
4
2021-07-17T22:48:03.000Z
2022-03-25T14:10:58.000Z
7KYU/words_to_sentence.py
yaznasivasai/python_codewars
25493591dde4649dc9c1ec3bece8191a3bed6818
[ "MIT" ]
null
null
null
7KYU/words_to_sentence.py
yaznasivasai/python_codewars
25493591dde4649dc9c1ec3bece8191a3bed6818
[ "MIT" ]
3
2021-06-14T14:18:16.000Z
2022-03-16T06:02:02.000Z
def words_to_sentence(words: list) -> str: """ This function create a string from a list of strings, separated by space. """ return ' '.join(words)
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4
f1d3eb9d9dab05a31381c38ed24576dd96752996
920
py
Python
python_submitty_utils/tests/test_string_utils.py
zeez2030/Submitty
7118944ff4adc6f15d76984eb10a1e862926d724
[ "BSD-3-Clause" ]
411
2016-06-14T20:52:25.000Z
2022-03-31T21:20:25.000Z
python_submitty_utils/tests/test_string_utils.py
KaelanWillauer/Submitty
cf9b6ceda15ec0a661e2ca81ea7864790094c64a
[ "BSD-3-Clause" ]
5,730
2016-05-23T21:04:32.000Z
2022-03-31T10:08:06.000Z
python_submitty_utils/tests/test_string_utils.py
KaelanWillauer/Submitty
cf9b6ceda15ec0a661e2ca81ea7864790094c64a
[ "BSD-3-Clause" ]
423
2016-09-22T21:11:30.000Z
2022-03-29T18:55:28.000Z
import unittest from submitty_utils import string_utils class TestUser(unittest.TestCase): def testNegativeLength(self): self.assertEqual(string_utils.generate_random_string(-1), '') def testZeroLength(self): self.assertEqual(string_utils.generate_random_string(0), '') def testPositiveLength(self): self.assertEqual(len(string_utils.generate_random_string(1)), 1) def testRandom(self): # Very low chance of generating the same string twice. for _ in range(10): self.assertNotEqual(string_utils.generate_random_string(10), string_utils.generate_random_string(10)) self.assertNotEqual(string_utils.generate_random_string(100), string_utils.generate_random_string(100)) self.assertNotEqual(string_utils.generate_random_string(1000), string_utils.generate_random_string(1000)) if __name__ == '__main__': unittest.main()
36.8
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0.265116
0.348837
0.609302
0.609302
0.389147
0.313178
0
0
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0.031169
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920
24
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0
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4
9e477dd3df7f5df09267317cd3bfe78b579ab14e
212
py
Python
coaster/views/__init__.py
AferriDaniel/coaster
3ffbc9d33c981284593445299aaee0c3cc0cdb0b
[ "BSD-2-Clause" ]
48
2015-01-15T08:57:24.000Z
2022-01-26T04:04:34.000Z
coaster/views/__init__.py
AferriDaniel/coaster
3ffbc9d33c981284593445299aaee0c3cc0cdb0b
[ "BSD-2-Clause" ]
169
2015-01-16T13:17:38.000Z
2021-05-31T13:23:23.000Z
coaster/views/__init__.py
AferriDaniel/coaster
3ffbc9d33c981284593445299aaee0c3cc0cdb0b
[ "BSD-2-Clause" ]
17
2015-02-15T07:39:04.000Z
2021-10-05T11:20:22.000Z
""" View helpers ============ Coaster provides classes, functions and decorators for common scenarios in view handlers. """ # flake8: noqa from .classview import * from .decorators import * from .misc import *
16.307692
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4
9e66515414c951c5a5647702f8a347abcfdec43d
10,659
py
Python
unittests/TestGameServerController.py
dgsd-consulting/python_cowbull_server
b3f5e36c98c29701b0faf0adcf5d7b56a91a7402
[ "Apache-2.0" ]
1
2019-01-22T03:48:30.000Z
2019-01-22T03:48:30.000Z
unittests/TestGameServerController.py
dgsd-consulting/python_cowbull_server
b3f5e36c98c29701b0faf0adcf5d7b56a91a7402
[ "Apache-2.0" ]
1
2019-04-14T21:15:17.000Z
2019-08-08T01:25:29.000Z
unittests/TestGameServerController.py
davidjsanders/python_cowbull_server
b3f5e36c98c29701b0faf0adcf5d7b56a91a7402
[ "Apache-2.0" ]
2
2018-09-20T20:28:48.000Z
2018-10-02T20:57:45.000Z
import json from unittest import TestCase from flask import Flask from flask_controllers.GameServerController import GameServerController from flask_helpers.VersionHelpers import VersionHelpers from python_cowbull_server import app from python_cowbull_server.Configurator import Configurator from flask_helpers.ErrorHandler import ErrorHandler from Persistence.PersistenceEngine import PersistenceEngine class TestGameServerController(TestCase): def setUp(self): self.info = VersionHelpers() app.testing = True self.app = app.test_client() self.c = Configurator() self.c.execute_load(self.app.application) # Force use of File persister p = {"engine_name": "file", "parameters": {}} self.app.application.config["PERSISTER"] = PersistenceEngine(**p) if self.info.major < 3: self.json_raises = ValueError else: self.json_raises = json.JSONDecodeError def test_gsc_init(self): GameServerController() def test_gsc_bad_init(self): self.app.application.config["PERSISTER"] = None try: GameServerController() except ValueError as ve: self.assertIn("No persistence engine is defined", str(ve)) def test_gsc_valid_init(self): gsc = GameServerController() self.assertIsNone(gsc.game_version) self.assertIsInstance(gsc.handler, ErrorHandler) def test_gsc_get_game(self): with self.app as c: response = c.get('/v1/game') self.assertEqual(response.status, '200 OK') def test_gsc_get_game_bad_mode(self): gsc = GameServerController() with self.app as c: response = c.get('/v1/game?mode=reallyreallytough') self.assertEqual(response.status, '400 BAD REQUEST') self.assertIn("Mode reallyreallytough not found", str(response.data)) def test_gsc_get_game_bad_persister(self): p = self.app.application.config["PERSISTER"] with self.app: with self.assertRaises(TypeError): self.app.application.config["PERSISTER"] = PersistenceEngine( engine_name="foobar", parameters={ "host": "foobar", "port": 27017, "db": "cowbull" } ) self.app.application.config["PERSISTER"] = p def test_gsc_get_game_no_persister(self): p = self.app.application.config["PERSISTER"] with self.app as c: with self.assertRaises(KeyError): self.app.application.config["PERSISTER"] = PersistenceEngine( engine_name="redis", parameters={ "host": "local", "port": 6379, "db": "cowbull" } ) c.get('/v1/game') self.app.application.config["PERSISTER"] = p def test_gsc_get_game_badparam_persister(self): p = self.app.application.config["PERSISTER"] with self.app: with self.assertRaises(TypeError): self.app.application.config["PERSISTER"] = PersistenceEngine( engine_name="redis", parameters={ "host": "local", "port": 6379, "db": "cowbull", "foo": "bar" } ) self.app.application.config["PERSISTER"] = p def test_gsc_post_game(self): with self.app as c: response = c.get('/v1/game') self.assertEqual(response.status[0:3], '200') key = json.loads(response.data)["key"] game_data = { "key": key, "digits": [0, 1, 2, 3] } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '200') def test_gsc_post_bad_key(self): with self.app as c: key = '1234' game_data = { "key": key, "digits": [0, 1, 2, 3] } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("The request must contain a valid game key", str(response.data)) def test_gsc_post_bad_digits(self): with self.app as c: response = c.get('/v1/game') self.assertEqual(response.status[0:3], '200') key = json.loads(response.data)["key"] game_data = { "key": key, "digits": ['X', 'Y', 2, 3] } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') def test_gsc_post_no_digits(self): with self.app as c: response = c.get('/v1/game') self.assertEqual(response.status[0:3], '200') key = json.loads(response.data)["key"] game_data = { "key": key } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("The request must contain an array of digits", str(response.data)) def test_gsc_post_num_digits(self): with self.app as c: response = c.get('/v1/game') self.assertEqual(response.status[0:3], '200') key = json.loads(response.data)["key"] game_data = { "key": key, "digits": [0, 1, 2, 3, 4, 5] } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("The DigitWord objects are of different lengths", str(response.data)) def test_gsc_post_hilo_digits(self): with self.app as c: response = c.get('/v1/game') self.assertEqual(response.status[0:3], '200') key = json.loads(response.data)["key"] game_data = { "key": key, "digits": [-10, 21, 32, 43] } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("A digit must be a string representation or integer of a number", str(response.data)) def test_gsc_post_type_digits(self): with self.app as c: response = c.get('/v1/game') self.assertEqual(response.status[0:3], '200') key = json.loads(response.data)["key"] game_data = { "key": key, "digits": {"foo": "bar"} } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("A digit must be a string representation or integer of a number", str(response.data)) def test_gsc_post_no_json(self): with self.app as c: response = c.post( '/v1/game', content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("For some reason the json_dict is None!", str(response.data)) def test_gsc_post_bad_json(self): with self.app as c: response = c.post( '/v1/game', data=json.dumps({"keys": "1234"}), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("For some reason the json_dict does not contain a key", str(response.data)) def test_gsc_post_bad_gamekey(self): with self.app as c: key = '1234' game_data = { "key": key, "digits": ['X', 'Y', 2, 3] } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("Unable to open the key file", str(response.data)) def test_gsc_post_badtype_gamekey(self): with self.app as c: key = 1234 game_data = { "key": key, "digits": ['X', 'Y', 2, 3] } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("For some reason the json_dict does not contain a key!", str(response.data)) def test_gsc_post_no_gamekey(self): with self.app as c: game_data = { "digits": ['X', 'Y', 2, 3] } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("For some reason the json_dict does not contain a key", str(response.data)) def test_gsc_post_type_gamekey(self): with self.app as c: game_data = { "key": None, "digits": ['X', 'Y', 2, 3] } response = c.post( '/v1/game', data=json.dumps(game_data), content_type="application/json" ) self.assertEqual(response.status[0:3], '400') self.assertIn("For some reason the json_dict does not contain a key!", str(response.data))
36.628866
111
0.512149
1,142
10,659
4.65937
0.128722
0.051118
0.039466
0.114452
0.759632
0.742342
0.722609
0.705694
0.694982
0.667168
0
0.027661
0.372549
10,659
290
112
36.755172
0.767943
0.002533
0
0.610687
0
0
0.134619
0.002916
0
0
0
0
0.148855
1
0.083969
false
0
0.034351
0
0.122137
0
0
0
0
null
0
0
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1
1
1
0
1
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null
0
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0
0
0
0
0
0
0
0
0
4
9e80b42b52475d6e15054bfeda78fadd12468c69
2,133
py
Python
spotify/v1/track.py
geekonedge/spotify
1f4cf733a1fb11ab96259ed1e229b141e5c696f3
[ "MIT" ]
2
2018-10-10T08:00:47.000Z
2021-10-12T04:15:33.000Z
spotify/v1/track.py
geekonedge/spotify
1f4cf733a1fb11ab96259ed1e229b141e5c696f3
[ "MIT" ]
2
2018-08-31T21:59:47.000Z
2018-08-31T22:27:57.000Z
spotify/v1/track.py
geekonedge/spotify
1f4cf733a1fb11ab96259ed1e229b141e5c696f3
[ "MIT" ]
1
2018-08-31T21:18:58.000Z
2018-08-31T21:18:58.000Z
from spotify import values from spotify.page import Page from spotify.resource import Resource, UpgradableInstance class TrackContext(Resource): def __init__(self, version, id): super(TrackContext, self).__init__(version) self.id = id def fetch(self, market=values.UNSET): params = values.of({ 'market': market }) response = self.version.request('GET', '/tracks/{}'.format(self.id), params=params) return TrackInstance(self.version, response.json()) class TrackInstance(UpgradableInstance): @property def artists(self): from spotify.v1.artist import ArtistInstance return [ArtistInstance(self.version, artist) for artist in self.property('artists')] @property def available_markets(self): return self.property('available_markets') @property def disc_number(self): return self.property('disc_number') @property def duration_ms(self): return self.property('duration_ms') @property def explicit(self): return self.property('explicit') @property def external_urls(self): return self.property('external_urls') @property def id(self): return self.property('id') @property def name(self): return self.property('name') @property def preview_url(self): return self.property('preview_url') @property def track_number(self): return self.property('track_number') @property def type(self): return self.property('type') @property def uri(self): return self.property('uri') class TrackList(Resource): def get(self, id): return TrackContext(self.version, id) def list(self, ids, market=values.UNSET): params = values.of({ 'ids': ','.join(ids), 'market': market }) response = self.version.request('GET', '/tracks', params=params) return TrackPage(self.version, response.json(), 'tracks') class TrackPage(Page): @property def instance_class(self): return TrackInstance
23.184783
92
0.635724
235
2,133
5.680851
0.238298
0.107116
0.115356
0.181273
0.158802
0.116854
0.070412
0.070412
0
0
0
0.000624
0.248476
2,133
91
93
23.43956
0.83219
0
0
0.292308
0
0
0.069386
0
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0
0
1
0.261538
false
0
0.061538
0.2
0.630769
0
0
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0
null
0
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null
0
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1
0
0
0
1
1
0
0
4
9e930c5a58d02157e9d5c759c46110f181e09d5b
85
py
Python
lxman/cli/__main__.py
stuxcrystal/lxman
ea0b44a8b9424b3489e393591f5384a986f583a3
[ "MIT" ]
1
2017-12-04T18:48:21.000Z
2017-12-04T18:48:21.000Z
lxman/cli/__main__.py
stuxcrystal/lxman
ea0b44a8b9424b3489e393591f5384a986f583a3
[ "MIT" ]
null
null
null
lxman/cli/__main__.py
stuxcrystal/lxman
ea0b44a8b9424b3489e393591f5384a986f583a3
[ "MIT" ]
null
null
null
import colorama from lxman.cli import cli if __name__ == "__main__": cli()
14.166667
27
0.658824
11
85
4.363636
0.727273
0
0
0
0
0
0
0
0
0
0
0
0.247059
85
5
28
17
0.75
0
0
0
0
0
0.1
0
0
0
0
0
0
1
0
true
0
0.5
0
0.5
0
1
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0
null
0
0
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null
0
0
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0
0
0
1
0
1
0
0
0
0
4
9eb81dc7bd07da6f0a064dae1f82cb5f9f4c811b
422
py
Python
app/auth/forms.py
jakhax/esp9266_rfid_lock
e9c25628a023c8d6005a136e240ca1a36589fd36
[ "MIT" ]
2
2020-11-10T09:16:21.000Z
2021-12-15T07:27:17.000Z
app/auth/forms.py
jakhax/consecutive_normal_punches
e9c25628a023c8d6005a136e240ca1a36589fd36
[ "MIT" ]
null
null
null
app/auth/forms.py
jakhax/consecutive_normal_punches
e9c25628a023c8d6005a136e240ca1a36589fd36
[ "MIT" ]
null
null
null
from flask_wtf import FlaskForm from wtforms import StringField,SubmitField,BooleanField,PasswordField from wtforms.validators import Required,DataRequired,Length class LoginForm(FlaskForm): username = StringField('username', validators=[DataRequired(), Length(1, 32)]) password = PasswordField('Password', validators=[DataRequired()]) remember = BooleanField('Remember me') submit = SubmitField('Log in')
46.888889
82
0.779621
43
422
7.627907
0.581395
0.067073
0
0
0
0
0
0
0
0
0
0.008021
0.113744
422
9
83
46.888889
0.868984
0
0
0
0
0
0.078014
0
0
0
0
0
0
1
0
false
0.25
0.375
0
1
0
0
0
0
null
0
0
0
0
0
0
0
0
0
0
0
0
0
1
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0
0
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0
0
0
0
null
0
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0
0
0
0
1
1
0
1
0
0
4
7b35640cc33e749326b0108e01c9308ac2c3ffda
603
py
Python
pRestore/stuff.py
snaiperskaya96/pRestore
cd51050fbd02423b038233c804e1c1ee0bfe59e7
[ "MIT" ]
null
null
null
pRestore/stuff.py
snaiperskaya96/pRestore
cd51050fbd02423b038233c804e1c1ee0bfe59e7
[ "MIT" ]
null
null
null
pRestore/stuff.py
snaiperskaya96/pRestore
cd51050fbd02423b038233c804e1c1ee0bfe59e7
[ "MIT" ]
null
null
null
class Stuff: def __init__(self): return @staticmethod def print_logo(): print ''' ____ _ _ __ | _ \ ___ ___| |_ ___ _ __ ___ | '_ \| |_) / _ \/ __| __/ _ \| '__/ _ \\ | |_) | _ < __/\__ \ || (_) | | | __/ | .__/|_| \_\___||___/\__\___/|_| \___| |_| ''' class NotAFolder(Exception): def __init__(self, value): self.value = value def __str__(self): return repr(self.value) class NotAFile(Exception): def __init__(self, value): self.value = value def __str__(self): return repr(self.value)
19.451613
41
0.507463
45
603
4.888889
0.333333
0.245455
0.15
0.181818
0.618182
0.618182
0.618182
0.618182
0.618182
0.618182
0
0
0.3267
603
30
42
20.1
0.541872
0
0
0.347826
0
0.086957
0.333333
0.038143
0
0
0
0
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null
null
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null
null
0.086957
0
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null
1
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1
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0
0
0
0
null
0
0
0
0
1
0
0
0
0
0
0
0
0
4
7b600881aefecd926df3678ce829274a46e661ba
18
py
Python
schicexplorer/_version.py
joachimwolff/scHiCExplorer
8aebb444f3968d398c260690c89c9cd0e3186f0e
[ "MIT" ]
10
2019-12-09T04:11:18.000Z
2021-03-24T15:29:06.000Z
common/walt/common/version.py
drakkar-lig/walt-python-packages
b778992e241d54b684f54715d83c4aff98a01db7
[ "BSD-3-Clause" ]
73
2016-04-29T13:17:26.000Z
2022-03-01T15:06:48.000Z
common/walt/common/version.py
drakkar-lig/walt-python-packages
b778992e241d54b684f54715d83c4aff98a01db7
[ "BSD-3-Clause" ]
3
2019-03-18T14:27:56.000Z
2021-06-03T12:07:02.000Z
__version__ = '7'
9
17
0.666667
2
18
4
1
0
0
0
0
0
0
0
0
0
0
0.066667
0.166667
18
1
18
18
0.466667
0
0
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0
0.055556
0
0
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0
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1
0
false
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1
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null
0
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0
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null
0
0
0
0
0
0
0
0
0
0
0
0
0
4
7b65f6a1d2bed41aa57a027424c81ab5587c97d9
123
py
Python
exercise/newfile5.py
LeeBeral/python
9f0d360d69ee5245e3ef13a9dc9fc666374587a4
[ "MIT" ]
null
null
null
exercise/newfile5.py
LeeBeral/python
9f0d360d69ee5245e3ef13a9dc9fc666374587a4
[ "MIT" ]
null
null
null
exercise/newfile5.py
LeeBeral/python
9f0d360d69ee5245e3ef13a9dc9fc666374587a4
[ "MIT" ]
null
null
null
alist = [1,2,3,5,5,1,3] b = set(alist) c = tuple(alist) print(b) print(c) print([x for x in b]) print([x for x in c])
17.571429
24
0.569106
30
123
2.333333
0.433333
0.171429
0.257143
0.285714
0.342857
0
0
0
0
0
0
0.072165
0.211382
123
7
25
17.571429
0.649485
0
0
0
0
0
0
0
0
0
0
0
0
1
0
false
0
0
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0.571429
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null
0
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1
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0
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0
0
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null
0
0
0
0
0
0
0
0
0
0
0
1
0
4
7b661c16cd5afafef4aba119027c917f67774a50
170
py
Python
ocp_resources/kubevirt_metrics_aggregation.py
kbidarkar/openshift-python-wrapper
3cd4d6d3b71c82ff87f032a51510d9c9d207f6cb
[ "Apache-2.0" ]
9
2021-07-05T18:35:55.000Z
2021-12-31T03:09:39.000Z
ocp_resources/kubevirt_metrics_aggregation.py
kbidarkar/openshift-python-wrapper
3cd4d6d3b71c82ff87f032a51510d9c9d207f6cb
[ "Apache-2.0" ]
418
2021-07-04T13:12:09.000Z
2022-03-30T08:37:45.000Z
ocp_resources/kubevirt_metrics_aggregation.py
kbidarkar/openshift-python-wrapper
3cd4d6d3b71c82ff87f032a51510d9c9d207f6cb
[ "Apache-2.0" ]
28
2021-07-04T12:48:18.000Z
2022-02-22T15:19:30.000Z
from ocp_resources.resource import NamespacedResource class KubevirtMetricsAggregation(NamespacedResource): api_group = NamespacedResource.ApiGroup.SSP_KUBEVIRT_IO
28.333333
59
0.870588
16
170
9
0.875
0
0
0
0
0
0
0
0
0
0
0
0.088235
170
5
60
34
0.929032
0
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1
0
false
0
0.333333
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null
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0
0
0
0
0
1
0
1
0
0
4
7b72e8377f711b1cb1ee17fd39204a3883465200
78
py
Python
shopify_csv/__init__.py
d-e-h-i-o/shopify_csv
0c49666bca38802a756502f72f835abb63115025
[ "MIT" ]
1
2021-02-28T11:36:50.000Z
2021-02-28T11:36:50.000Z
shopify_csv/__init__.py
d-e-h-i-o/shopify_csv
0c49666bca38802a756502f72f835abb63115025
[ "MIT" ]
null
null
null
shopify_csv/__init__.py
d-e-h-i-o/shopify_csv
0c49666bca38802a756502f72f835abb63115025
[ "MIT" ]
null
null
null
from .constants import FIELDS, PROPERTIES from .shopify_csv import ShopifyRow
26
41
0.846154
10
78
6.5
0.8
0
0
0
0
0
0
0
0
0
0
0
0.115385
78
2
42
39
0.942029
0
0
0
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0
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1
0
true
0
1
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0
null
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null
0
0
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0
0
0
1
0
1
0
0
0
0
4
7b87f62b10bc328cd7870120d84ededf89b99acb
21
py
Python
data/studio21_generated/introductory/4853/starter_code.py
vijaykumawat256/Prompt-Summarization
614f5911e2acd2933440d909de2b4f86653dc214
[ "Apache-2.0" ]
null
null
null
data/studio21_generated/introductory/4853/starter_code.py
vijaykumawat256/Prompt-Summarization
614f5911e2acd2933440d909de2b4f86653dc214
[ "Apache-2.0" ]
null
null
null
data/studio21_generated/introductory/4853/starter_code.py
vijaykumawat256/Prompt-Summarization
614f5911e2acd2933440d909de2b4f86653dc214
[ "Apache-2.0" ]
null
null
null
def double_char(s):
10.5
19
0.714286
4
21
3.5
1
0
0
0
0
0
0
0
0
0
0
0
0.142857
21
2
20
10.5
0.777778
0
0
0
0
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0
0
0
0
0
0
null
null
0
0
null
null
0
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1
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null
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0
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1
0
0
0
0
0
0
0
0
4
7b9a53fe727088aa66ec964d3fe2b9eeb158dba7
543
py
Python
dashboard/migrations/0016_auto_20200222_2336.py
BDALab/GENEActiv-sleep-analyses-system
f0458de041153f2dee240a53571149827de00a2e
[ "MIT" ]
null
null
null
dashboard/migrations/0016_auto_20200222_2336.py
BDALab/GENEActiv-sleep-analyses-system
f0458de041153f2dee240a53571149827de00a2e
[ "MIT" ]
null
null
null
dashboard/migrations/0016_auto_20200222_2336.py
BDALab/GENEActiv-sleep-analyses-system
f0458de041153f2dee240a53571149827de00a2e
[ "MIT" ]
null
null
null
# Generated by Django 2.2.5 on 2020-02-22 22:36 from django.db import migrations class Migration(migrations.Migration): dependencies = [ ('dashboard', '0015_auto_20200222_2200'), ] operations = [ migrations.RemoveField( model_name='subject', name='handedness', ), migrations.RemoveField( model_name='subject', name='height', ), migrations.RemoveField( model_name='subject', name='weight', ), ]
20.884615
49
0.546961
49
543
5.938776
0.612245
0.216495
0.268041
0.309278
0.42268
0.42268
0
0
0
0
0
0.086592
0.3407
543
25
50
21.72
0.726257
0.082873
0
0.473684
1
0
0.15121
0.046371
0
0
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1
0
false
0
0.052632
0
0.210526
0
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null
1
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0
0
0
0
0
4
7bbe575d89df5cb9077767131f1bcff71b4ea2bc
191
py
Python
cloudflare_ddns/__init__.py
joshuaavalon/cloudflare-ddns
9a79a73dc6f723d2bd9afd26289a9c990744f4e7
[ "Apache-2.0" ]
1
2019-05-16T15:25:22.000Z
2019-05-16T15:25:22.000Z
cloudflare_ddns/__init__.py
joshuaavalon/cloudflare-ddns
9a79a73dc6f723d2bd9afd26289a9c990744f4e7
[ "Apache-2.0" ]
null
null
null
cloudflare_ddns/__init__.py
joshuaavalon/cloudflare-ddns
9a79a73dc6f723d2bd9afd26289a9c990744f4e7
[ "Apache-2.0" ]
1
2019-06-17T15:22:29.000Z
2019-06-17T15:22:29.000Z
from cloudflare_ddns.configuration import Configuration, SiteConfiguration from cloudflare_ddns.ddns import CloudflareDDNS __all__ = ["CloudflareDDNS", "Configuration", "SiteConfiguration"]
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4
c8870211f55a315e2890fcb0bc548ae67550546d
137
py
Python
apps/users/urls.py
akundev/akundotdev
98b47925b948c920789c5acebad86944162bf53a
[ "Apache-2.0" ]
null
null
null
apps/users/urls.py
akundev/akundotdev
98b47925b948c920789c5acebad86944162bf53a
[ "Apache-2.0" ]
3
2021-03-30T14:21:08.000Z
2021-07-07T03:04:26.000Z
apps/users/urls.py
almazkun/akundotdev
98b47925b948c920789c5acebad86944162bf53a
[ "Apache-2.0" ]
null
null
null
from django.urls import path from .views import AboutTemplateView urlpatterns = [path("", AboutTemplateView.as_view(), name="about")]
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4
c8d1c681c7ce88bcb176a7a0b8c693c830a7bc65
160
py
Python
Python/mixedfractions/mixedfractions.py
rvrheenen/OpenKattis
7fd59fcb54e86cdf10f56c580c218c62e584f391
[ "MIT" ]
12
2016-10-03T20:43:43.000Z
2021-06-12T17:18:42.000Z
Python/mixedfractions/mixedfractions.py
rvrheenen/OpenKattis
7fd59fcb54e86cdf10f56c580c218c62e584f391
[ "MIT" ]
null
null
null
Python/mixedfractions/mixedfractions.py
rvrheenen/OpenKattis
7fd59fcb54e86cdf10f56c580c218c62e584f391
[ "MIT" ]
10
2017-11-14T19:56:37.000Z
2021-02-02T07:39:57.000Z
while(True): inp = [int(x) for x in input().split()] if inp[0] == 0 and inp[1] == 0: break print(inp[0]//inp[1], inp[0]%inp[1], "/", inp[1])
32
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0.48125
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4
c8d758a027414f97b213413022804a7b0f68fe28
523
py
Python
version.py
Jin-Tao-208/web_science_coursework
bb4ab2226b70e7b0f7bbef40ceb002900e757a31
[ "MIT" ]
null
null
null
version.py
Jin-Tao-208/web_science_coursework
bb4ab2226b70e7b0f7bbef40ceb002900e757a31
[ "MIT" ]
null
null
null
version.py
Jin-Tao-208/web_science_coursework
bb4ab2226b70e7b0f7bbef40ceb002900e757a31
[ "MIT" ]
null
null
null
# versions of libraries used import sys import tweepy import numpy as np import pymongo import emoji import nltk.tokenize import requests print("Python version:{}".format(sys.version)) print("tweepy version:{}".format(tweepy.__version__)) print("pymongo version:{}".format(pymongo.__version__)) print("emoji version:{}".format(emoji.__version__)) print("requests version:{}".format(requests.__version__)) print("numpy version:{}".format(np.__version__)) print("nltk version:{}".format(nltk.__version__))
29.055556
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523
5.809524
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4
c8ea55c5455ae4d69b07f53ce37792d7f4a82837
132
py
Python
3_binary_tree/__init__.py
freshklauser/LeeCodeSummary
d9d776ddfc44fee844123b848d43a78e9ba4117e
[ "MIT" ]
null
null
null
3_binary_tree/__init__.py
freshklauser/LeeCodeSummary
d9d776ddfc44fee844123b848d43a78e9ba4117e
[ "MIT" ]
null
null
null
3_binary_tree/__init__.py
freshklauser/LeeCodeSummary
d9d776ddfc44fee844123b848d43a78e9ba4117e
[ "MIT" ]
1
2021-11-18T01:58:29.000Z
2021-11-18T01:58:29.000Z
# -*- coding: utf-8 -*- # @Author : Administrator # @DateTime : 2021/10/17 20:40 # @FileName : __init__.py # @SoftWare : PyCharm
18.857143
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4
740438f708cbfe346a44823a28bc4994e0b1022b
196
py
Python
uuid1/models.py
charlesDavid009/Uuid
7553843c0112e7f0e248cd5692eccca72553e720
[ "MIT" ]
1
2021-05-24T18:52:53.000Z
2021-05-24T18:52:53.000Z
uuid1/models.py
charlesDavid009/Uuid
7553843c0112e7f0e248cd5692eccca72553e720
[ "MIT" ]
null
null
null
uuid1/models.py
charlesDavid009/Uuid
7553843c0112e7f0e248cd5692eccca72553e720
[ "MIT" ]
null
null
null
from django.db import models import uuid # Create your models here. class Uuid(models.Model): uuids = models.CharField(max_length=225) created = models.DateTimeField(auto_now_add=True)
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9
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4
cdc3dc53bc12e7691159632083c1b94dc1973dac
74
py
Python
tests/unit/conftest.py
fourTheorem/slic-slack
cffc870c2399feff67199050460abdcb3385ef17
[ "Apache-2.0" ]
4
2022-01-14T15:47:55.000Z
2022-01-14T16:15:18.000Z
tests/unit/conftest.py
fourTheorem/slic-slack
cffc870c2399feff67199050460abdcb3385ef17
[ "Apache-2.0" ]
null
null
null
tests/unit/conftest.py
fourTheorem/slic-slack
cffc870c2399feff67199050460abdcb3385ef17
[ "Apache-2.0" ]
null
null
null
import os os.environ['SLACK_WEBHOOK_URL'] = 'https://example.com/slack'
14.8
61
0.72973
11
74
4.727273
0.818182
0
0
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0.094595
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4
62
18.5
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1
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4
cdcc7612e16b3989892d1765ee8591ffd8c61843
1,536
py
Python
src/database/CRUD/create.py
gregory-chekler/api
11ecbea945e7eb6fa677a0c0bb32bda51ba15f28
[ "MIT" ]
2
2020-07-24T12:58:17.000Z
2020-12-17T02:26:13.000Z
src/database/CRUD/create.py
gregory-chekler/api
11ecbea945e7eb6fa677a0c0bb32bda51ba15f28
[ "MIT" ]
214
2019-06-26T17:33:54.000Z
2022-03-26T00:02:34.000Z
src/database/CRUD/create.py
massenergize/portalBackEnd
7ed971b2be13901667a216d8c8a46f0bed6d6ccd
[ "MIT" ]
6
2020-03-13T20:29:06.000Z
2021-08-20T16:15:08.000Z
""" This file contains code to post data from the database. This is meant to centralize the insertion of data into the database so that multiple apps can call on the methods in this file without having to define their own and to prevent code redundancy. """ from ..models import * from ..utils.common import ensure_required_fields from ..utils.create_factory import CreateFactory def new_action(args): factory = CreateFactory(Action, args) return factory.create(Action, args) def new_community(args): factory = CreateFactory(Community, args) return factory.create() def new_event(args): factory = CreateFactory(Event, args) return factory.create() def new_user_profile(args): factory = CreateFactory(UserProfile, args) return factory.create(UserProfile, args) def new_location(args): factory = CreateFactory(Location, args) return factory.create() def new_subscriber(args): factory = CreateFactory(Subscriber, args) return factory.create(Subscriber, args) def new_billing_statement(args): factory = CreateFactory(BillingStatement, args) return factory.create(BillingStatement, args) def new_slider(args): factory = CreateFactory(Slider, args) return factory.create(Slider, args) def new_menu(args): factory = CreateFactory(Menu, args) return factory.create(Menu, args) def new_page_section(args): factory = CreateFactory(PageSection, args) return factory.create(PageSection, args) def new_page(args): factory = CreateFactory(Page, args) return factory.create(Page, args)
25.180328
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0.76888
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1,536
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1,536
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0.884498
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0
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0
4
b5aa67663a42b92a7d170586d7626bb2aa4c2ae4
350
py
Python
problems/reverse-words-in-string/reverse-words-in-string.py
vidyadeepa/the-coding-interview
90171b77b6884176a6c28bdccb5d45bd6929b489
[ "MIT" ]
1,571
2015-12-09T14:08:47.000Z
2022-03-30T21:34:36.000Z
problems/reverse-words-in-string/reverse-words-in-string.py
vidyadeepa/the-coding-interview
90171b77b6884176a6c28bdccb5d45bd6929b489
[ "MIT" ]
117
2015-10-22T05:59:19.000Z
2021-09-17T00:14:38.000Z
problems/reverse-words-in-string/reverse-words-in-string.py
vidyadeepa/the-coding-interview
90171b77b6884176a6c28bdccb5d45bd6929b489
[ "MIT" ]
452
2015-10-21T23:00:58.000Z
2022-03-18T21:16:50.000Z
import re def reverse_str(string): string = string.strip() string = re.sub("\s+", " ", string) result = [word[::-1] for word in string[::-1].split(" ")] return " ".join(result) # "degree CS": print reverse_str(" CS degree") print reverse_str("CS degree") print reverse_str("CS degree ") print reverse_str(" CS degree")
23.333333
61
0.614286
48
350
4.375
0.416667
0.238095
0.285714
0.32381
0.438095
0.438095
0.438095
0.438095
0.438095
0.438095
0
0.00722
0.208571
350
14
62
25
0.750903
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4
b5b452ab3b7a17e033f9002b103343c10716d627
27
py
Python
my_env/lib/python3.6/site-packages/affine/tests/__init__.py
wilsonfilhodev/gis
65926fd36460a7a3590ef7511ccae1d64e3d9988
[ "MIT" ]
121
2015-03-26T15:40:37.000Z
2021-10-10T14:19:06.000Z
my_env/lib/python3.6/site-packages/affine/tests/__init__.py
wilsonfilhodev/gis
65926fd36460a7a3590ef7511ccae1d64e3d9988
[ "MIT" ]
53
2015-06-01T23:44:58.000Z
2020-12-14T15:40:47.000Z
my_env/lib/python3.6/site-packages/affine/tests/__init__.py
wilsonfilhodev/gis
65926fd36460a7a3590ef7511ccae1d64e3d9988
[ "MIT" ]
24
2015-06-01T19:30:21.000Z
2021-08-13T19:47:41.000Z
"""Affine tests package"""
13.5
26
0.666667
3
27
6
1
0
0
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0.111111
27
1
27
27
0.75
0.740741
0
null
0
null
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0
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1
null
true
0
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1
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4
a9085ff8566d990dfd43c879277cd4b73db4ecb9
185
py
Python
exercicios1/ex017A_hypotensue.py
GabrielaCardosoSilva/python
51d2733c3f3378427f025633d7d0d623fb6c2d73
[ "MIT" ]
1
2021-12-21T21:46:31.000Z
2021-12-21T21:46:31.000Z
exercicios1/ex017A_hypotensue.py
GabrielaCardosoSilva/python
51d2733c3f3378427f025633d7d0d623fb6c2d73
[ "MIT" ]
null
null
null
exercicios1/ex017A_hypotensue.py
GabrielaCardosoSilva/python
51d2733c3f3378427f025633d7d0d623fb6c2d73
[ "MIT" ]
null
null
null
co = float(input('Comprimento do cateto oposto: ')) ca = float(input('Comprimento do cateto adjacente: ')) hy = ((co**2 + ca**2) ** (1/2)) print('A hipotenusa mede {:.2f}'.format(hy))
30.833333
54
0.632432
28
185
4.178571
0.642857
0.17094
0.358974
0.393162
0.495727
0
0
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0
0
0.031447
0.140541
185
5
55
37
0.704403
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0
0
0
0
0
4
a93139d8990a5f884a5f91950142a530d39d5797
170
py
Python
correctiv_auth/urls.py
correctiv/django-allauth-correctiv
833e1f6e019834df04146c25198a93f411d66b79
[ "MIT" ]
null
null
null
correctiv_auth/urls.py
correctiv/django-allauth-correctiv
833e1f6e019834df04146c25198a93f411d66b79
[ "MIT" ]
null
null
null
correctiv_auth/urls.py
correctiv/django-allauth-correctiv
833e1f6e019834df04146c25198a93f411d66b79
[ "MIT" ]
null
null
null
from allauth.socialaccount.providers.oauth2.urls import default_urlpatterns from .provider import CorrectivProvider urlpatterns = default_urlpatterns(CorrectivProvider)
34
75
0.882353
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170
8.705882
0.647059
0.243243
0
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0.006329
0.070588
170
4
76
42.5
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false
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4
a9420e4c78acda83f196da1eaae00337d68d7f90
132
py
Python
docs/src/mkautodoc/__init__.py
kabirkhan/spacy-data-debug
5df124d5520d5eb9bbdcd45943e325e07ed2aed2
[ "MIT" ]
null
null
null
docs/src/mkautodoc/__init__.py
kabirkhan/spacy-data-debug
5df124d5520d5eb9bbdcd45943e325e07ed2aed2
[ "MIT" ]
null
null
null
docs/src/mkautodoc/__init__.py
kabirkhan/spacy-data-debug
5df124d5520d5eb9bbdcd45943e325e07ed2aed2
[ "MIT" ]
null
null
null
from .extension import MKAutoDocExtension, makeExtension __version__ = "0.1.0" __all__ = ["MKAutoDocExtension", "makeExtension"]
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a96249e5e27a4fb1f8a7acc8336f250dfb9992c9
64,609
py
Python
pyeccodes/defs/grib2/localConcepts/eswi/name_def.py
ecmwf/pyeccodes
dce2c72d3adcc0cb801731366be53327ce13a00b
[ "Apache-2.0" ]
7
2020-04-14T09:41:17.000Z
2021-08-06T09:38:19.000Z
pyeccodes/defs/grib2/localConcepts/eswi/name_def.py
ecmwf/pyeccodes
dce2c72d3adcc0cb801731366be53327ce13a00b
[ "Apache-2.0" ]
null
null
null
pyeccodes/defs/grib2/localConcepts/eswi/name_def.py
ecmwf/pyeccodes
dce2c72d3adcc0cb801731366be53327ce13a00b
[ "Apache-2.0" ]
3
2020-04-30T12:44:48.000Z
2020-12-15T08:40:26.000Z
import pyeccodes.accessors as _ def load(h): def wrapped(h): discipline = h.get_l('discipline') parameterCategory = h.get_l('parameterCategory') parameterNumber = h.get_l('parameterNumber') if discipline == 3 and parameterCategory == 1 and parameterNumber == 19: return 'Wind speed (space)' if discipline == 3 and parameterCategory == 1 and parameterNumber == 13: return 'Atmospheric divergence' if discipline == 3 and parameterCategory == 1 and parameterNumber == 12: return 'Reflectance in 3.9 micron channel' if discipline == 3 and parameterCategory == 1 and parameterNumber == 11: return 'Reflectance in 1.6 micron channel' if discipline == 3 and parameterCategory == 1 and parameterNumber == 10: return 'Reflectance in 0.8 micron channel' if discipline == 3 and parameterCategory == 1 and parameterNumber == 9: return 'Reflectance in 0.6 micron channel' if discipline == 3 and parameterCategory == 1 and parameterNumber == 8: return 'Relative azimuth angle' if discipline == 3 and parameterCategory == 1 and parameterNumber == 7: return 'Solar zenith angle' if discipline == 3 and parameterCategory == 1 and parameterNumber == 6: return 'Number of pixel used' if discipline == 3 and parameterCategory == 1 and parameterNumber == 5: return 'Estimated v component of wind' if discipline == 3 and parameterCategory == 1 and parameterNumber == 4: return 'Estimated u component of wind' if discipline == 3 and parameterCategory == 1 and parameterNumber == 3: return 'Cloud top height quality indicator' if discipline == 3 and parameterCategory == 1 and parameterNumber == 2: return 'Cloud top height' if discipline == 3 and parameterCategory == 1 and parameterNumber == 1: return 'Instananeous rain rate' if discipline == 3 and parameterCategory == 1 and parameterNumber == 0: return 'Estimated precipitation' if discipline == 3 and parameterCategory == 0 and parameterNumber == 9: return 'Fire detection indicator' if discipline == 3 and parameterCategory == 0 and parameterNumber == 8: return 'Pixel scene type' if discipline == 3 and parameterCategory == 0 and parameterNumber == 7: return 'Cloud mask' if discipline == 3 and parameterCategory == 0 and parameterNumber == 6: return 'Scaled skin temperature' if discipline == 3 and parameterCategory == 0 and parameterNumber == 5: return 'Scaled cloud top pressure' if discipline == 3 and parameterCategory == 0 and parameterNumber == 4: return 'Scaled lifted index' if discipline == 3 and parameterCategory == 0 and parameterNumber == 3: return 'Scaled precipitable water' if discipline == 3 and parameterCategory == 0 and parameterNumber == 2: return 'Scaled brightness temperature' if discipline == 3 and parameterCategory == 0 and parameterNumber == 1: return 'Scaled albedo' if discipline == 3 and parameterCategory == 0 and parameterNumber == 0: return 'Scaled radiance' if discipline == 2 and parameterCategory == 3 and parameterNumber == 17: return 'Saturation of soil moisture' if discipline == 2 and parameterCategory == 3 and parameterNumber == 16: return 'Volumetric saturation of soil moisture' if discipline == 2 and parameterCategory == 3 and parameterNumber == 15: return 'Soil porosity' if discipline == 2 and parameterCategory == 3 and parameterNumber == 14: return 'Direct evaporation cease (soil moisture)' if discipline == 2 and parameterCategory == 3 and parameterNumber == 13: return 'Volumetric direct evaporation cease (soil moisture)' if discipline == 2 and parameterCategory == 3 and parameterNumber == 12: return 'Transpiration stress-onset (soil moisture)' if discipline == 2 and parameterCategory == 3 and parameterNumber == 11: return 'Volumetric transpiration stress-onset (soil moisture)' if discipline == 2 and parameterCategory == 3 and parameterNumber == 10: return 'Liquid volumetric soil moisture (non-frozen)' if discipline == 2 and parameterCategory == 3 and parameterNumber == 6: return 'Number of soil layers in root zone' if discipline == 2 and parameterCategory == 0 and parameterNumber == 27: return 'Volumetric wilting point' if discipline == 2 and parameterCategory == 0 and parameterNumber == 26: return 'Wilting point' if discipline == 2 and parameterCategory == 0 and parameterNumber == 25: return 'Volumetric soil moisture' if discipline == 2 and parameterCategory == 0 and parameterNumber == 24: return 'Heat flux' if discipline == 2 and parameterCategory == 0 and parameterNumber == 23: return 'Column-integrated soil water' if discipline == 2 and parameterCategory == 0 and parameterNumber == 22: return 'Soil moisture' if discipline == 2 and parameterCategory == 0 and parameterNumber == 21: return 'Soil moisture parameter in canopy conductance' if discipline == 2 and parameterCategory == 0 and parameterNumber == 20: return 'Humidity parameter in canopy conductance' if discipline == 2 and parameterCategory == 0 and parameterNumber == 19: return 'Temperature parameter in canopy conductance' if discipline == 2 and parameterCategory == 0 and parameterNumber == 18: return 'Solar parameter in canopy conductance' if discipline == 2 and parameterCategory == 0 and parameterNumber == 16: return 'Minimal stomatal resistance' if discipline == 2 and parameterCategory == 0 and parameterNumber == 15: return 'Canopy conductance' if discipline == 2 and parameterCategory == 0 and parameterNumber == 14: return 'Blackadar mixing length scale' if discipline == 2 and parameterCategory == 0 and parameterNumber == 13: return 'Plant canopy surface water' if discipline == 2 and parameterCategory == 0 and parameterNumber == 12: return 'Exchange coefficient' if discipline == 2 and parameterCategory == 0 and parameterNumber == 11: return 'Moisture availability' if discipline == 2 and parameterCategory == 0 and parameterNumber == 9: return 'Volumetric soil moisture content' if discipline == 2 and parameterCategory == 0 and parameterNumber == 8: return 'Land use' if discipline == 2 and parameterCategory == 0 and parameterNumber == 7: return 'Model terrain height' if discipline == 2 and parameterCategory == 0 and parameterNumber == 6: return 'Evapotranspiration' if discipline == 0 and parameterCategory == 6 and parameterNumber == 3: return 'Low cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 1: return 'Total cloud cover' if discipline == 0 and parameterCategory == 1 and parameterNumber == 11: return 'Snow depth' if discipline == 0 and parameterCategory == 1 and parameterNumber == 3: return 'Precipitable water' if discipline == 0 and parameterCategory == 1 and parameterNumber == 0: return 'Specific humidity' if discipline == 0 and parameterCategory == 3 and parameterNumber == 0: return 'Pressure' if discipline == 0 and parameterCategory == 3 and parameterNumber == 25: return 'Natural logarithm of pressure in Pa' if discipline == 0 and parameterCategory == 3 and parameterNumber == 24: return 'Anisotropy of sub-gridscale orography' if discipline == 0 and parameterCategory == 3 and parameterNumber == 23: return 'Gravity wave dissipation' if discipline == 0 and parameterCategory == 3 and parameterNumber == 22: return 'Slope of sub-gridscale orography' if discipline == 0 and parameterCategory == 3 and parameterNumber == 21: return 'Angle of sub-gridscale orography' if discipline == 0 and parameterCategory == 3 and parameterNumber == 20: return 'Standard deviation of sub-gridscale orography' if discipline == 0 and parameterCategory == 3 and parameterNumber == 19: return '5-wave geopotential height anomaly' if discipline == 0 and parameterCategory == 3 and parameterNumber == 18: return 'Planetary boundary layer height' if discipline == 0 and parameterCategory == 3 and parameterNumber == 17: return 'Meridional flux of gravity wave stress' if discipline == 0 and parameterCategory == 3 and parameterNumber == 16: return 'Zonal flux of gravity wave stress' if discipline == 0 and parameterCategory == 3 and parameterNumber == 15: return '5-wave geopotential height' if discipline == 0 and parameterCategory == 3 and parameterNumber == 14: return 'Density altitude' if discipline == 0 and parameterCategory == 3 and parameterNumber == 13: return 'Pressure altitude' if discipline == 0 and parameterCategory == 3 and parameterNumber == 12: return 'Thickness' if discipline == 0 and parameterCategory == 3 and parameterNumber == 11: return 'Altimeter setting' if discipline == 0 and parameterCategory == 2 and parameterNumber == 32: return 'Eta coordinate vertical velocity' if discipline == 0 and parameterCategory == 2 and parameterNumber == 29: return 'Drag coefficient' if discipline == 0 and parameterCategory == 2 and parameterNumber == 28: return 'v-component storm motion' if discipline == 0 and parameterCategory == 2 and parameterNumber == 27: return 'u-component storm motion' if discipline == 0 and parameterCategory == 2 and parameterNumber == 26: return 'Horizontal momentum flux' if discipline == 0 and parameterCategory == 2 and parameterNumber == 25: return 'Vertical speed shear' if discipline == 0 and parameterCategory == 2 and parameterNumber == 24: return 'v-component of wind (gust)' if discipline == 0 and parameterCategory == 2 and parameterNumber == 23: return 'u-component of wind (gust)' if discipline == 0 and parameterCategory == 1 and parameterNumber == 86: return 'Specific snow water content' if discipline == 0 and parameterCategory == 1 and parameterNumber == 85: return 'Specific rain water content' if discipline == 0 and parameterCategory == 1 and parameterNumber == 84: return 'Specific cloud ice water content' if discipline == 0 and parameterCategory == 1 and parameterNumber == 83: return 'Specific cloud liquid water content' if discipline == 0 and parameterCategory == 1 and parameterNumber == 68: return 'Ice pellets precipitation rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 67: return 'Freezing rain precipitation rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 66: return 'Snow precipitation rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 65: return 'Rain precipitation rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 64: return 'Total column integrated water vapour' if discipline == 0 and parameterCategory == 1 and parameterNumber == 62: return 'Snow evaporation' if discipline == 0 and parameterCategory == 1 and parameterNumber == 60: return 'Snow depth water equivalent' if discipline == 0 and parameterCategory == 1 and parameterNumber == 59: return 'Large scale snowfall rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 58: return 'Convective snowfall rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 57: return 'Total snowfall rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 56: return 'Large scale snowfall rate water equivalent' if discipline == 0 and parameterCategory == 1 and parameterNumber == 55: return 'Convective snowfall rate water equivalent' if discipline == 0 and parameterCategory == 1 and parameterNumber == 54: return 'Large scale precipitation rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 51: return 'Total column water (Vertically integrated total water)' if discipline == 0 and parameterCategory == 1 and parameterNumber == 50: return 'Total snow precipitation' if discipline == 0 and parameterCategory == 1 and parameterNumber == 49: return 'Total water precipitation' if discipline == 0 and parameterCategory == 1 and parameterNumber == 46: return 'Total column integrated snow' if discipline == 0 and parameterCategory == 1 and parameterNumber == 45: return 'Total column integrated rain' if discipline == 0 and parameterCategory == 1 and parameterNumber == 44: return 'Rain factor' if discipline == 0 and parameterCategory == 1 and parameterNumber == 43: return 'Rain fraction of total cloud water' if discipline == 3 and parameterCategory == 1 and parameterNumber == 23: return 'Angstrom coefficient' if discipline == 3 and parameterCategory == 1 and parameterNumber == 22: return 'Aerosol optical thickness at 1.640 micro-m' if discipline == 3 and parameterCategory == 1 and parameterNumber == 21: return 'Aerosol optical thickness at 0.810 micro-m' if discipline == 3 and parameterCategory == 1 and parameterNumber == 20: return 'Aerosol optical thickness at 0.635 micro-m' if discipline == 0 and parameterCategory == 19 and parameterNumber == 4: return 'Volcanic ash' atmosphericChemicalConsituentType = h.get_l('atmosphericChemicalConsituentType') if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10006: return 'HCN/Vaetecyanid' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10022: return 'TOLUENE' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10021: return 'BENZENE' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10012: return 'C2H5OOH/Ethyl hydroperoxide' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10002: return 'CH3O2H/Methyl hydroperoxide' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10001: return 'CH3O2/Methyl peroxy radical' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 12: return 'O/Oxygen atomic ground state (3P)' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 20: return 'H2/Molecular hydrogen' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 14: return 'HO2/Hydroperhydroxyl radical' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 16: return 'HONO' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 18: return 'HO2NO2/HO2NO2' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 15: return 'N2O5/Dinitrogen pentoxide' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 13: return 'NO3/Nitrate radical' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63011: return 'PAN/Peroxy acetyl nitrate' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 60013: return 'NMVOC_C/Total NMVOC as C' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10004: return 'CH3OH/Metanol' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10011: return 'C2H5OH/Ethanol' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10017: return 'C5H8/Isoprene' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 7: return 'HCHO/Formalydehyde' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10023: return 'OXYLENE/O-xylene' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10015: return 'C3H6/Propene' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10009: return 'C2H4/Ethene' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10016: return 'NC4H10/N-butane' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10008: return 'C2H6/Ethane' if discipline == 0 and parameterCategory == 19 and parameterNumber == 11: return 'Turbulent Kinetic Energy' if discipline == 10 and parameterCategory == 191 and parameterNumber == 1: return 'Meridional overturning stream function' if discipline == 10 and parameterCategory == 191 and parameterNumber == 0: return 'Seconds prior to initial reference time (defined in section1) (oceonography)' if discipline == 1 and parameterCategory == 1 and parameterNumber == 2: return 'Probability if 0.01 inch of precipitation' if discipline == 1 and parameterCategory == 1 and parameterNumber == 1: return 'Per cent precipitation in a sub-period of an overall period' if discipline == 1 and parameterCategory == 1 and parameterNumber == 0: return 'Conditional per cent precipitation amount fractile for an overall period' if discipline == 1 and parameterCategory == 0 and parameterNumber == 6: return 'Storm surface runoff' if discipline == 1 and parameterCategory == 0 and parameterNumber == 5: return 'Baseflow-groundwater runoff' if discipline == 1 and parameterCategory == 0 and parameterNumber == 4: return 'Snow water equivalent per cent of normal' if discipline == 1 and parameterCategory == 0 and parameterNumber == 3: return 'Elevation of snow-covered terrain' if discipline == 1 and parameterCategory == 0 and parameterNumber == 2: return 'Remotely-sensed snow cover' if discipline == 1 and parameterCategory == 0 and parameterNumber == 1: return 'Flash flood runoff' if discipline == 1 and parameterCategory == 0 and parameterNumber == 0: return 'Flash flood guidance' if discipline == 10 and parameterCategory == 0 and parameterNumber == 14: return 'Mean direction of Waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 15: return 'Mean period of waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 13: return 'Secondary wave mean period' if discipline == 10 and parameterCategory == 0 and parameterNumber == 12: return 'Secondary wave direction' if discipline == 10 and parameterCategory == 0 and parameterNumber == 11: return 'Primary wave mean period' if discipline == 10 and parameterCategory == 0 and parameterNumber == 10: return 'Primary wave direction' if discipline == 10 and parameterCategory == 0 and parameterNumber == 9: return 'Mean Period Swell Waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 8: return 'Sign Height Swell Waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 7: return 'Direction of Swell Waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 6: return 'Mean Period Wind Waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 5: return 'Sign Height Wind Waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 4: return 'Direction of Wind Waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 3: return 'Significant wave height' if discipline == 10 and parameterCategory == 2 and parameterNumber == 8: return 'Ice divergence' if discipline == 10 and parameterCategory == 2 and parameterNumber == 7: return 'Ice growth rate' if discipline == 10 and parameterCategory == 2 and parameterNumber == 3: return 'Speed of ice drift' if discipline == 10 and parameterCategory == 2 and parameterNumber == 2: return 'Direction of ice drift' if discipline == 10 and parameterCategory == 2 and parameterNumber == 1: return 'Total ice thickness' if discipline == 10 and parameterCategory == 2 and parameterNumber == 0: return 'Ice Cover' if discipline == 0 and parameterCategory == 3 and parameterNumber == 10: return 'Density' if discipline == 10 and parameterCategory == 3 and parameterNumber == 0: return 'Water temperature' if discipline == 0 and parameterCategory == 6 and parameterNumber == 1: return 'Total Cloud Cover' if discipline == 10 and parameterCategory == 4 and parameterNumber == 1: return 'Main thermocline anomaly' if discipline == 10 and parameterCategory == 4 and parameterNumber == 0: return 'Main thermocline depth' if discipline == 10 and parameterCategory == 4 and parameterNumber == 2: return 'Transient thermocline depth' if discipline == 0 and parameterCategory == 19 and parameterNumber == 3: return 'Mixed layer depth' if discipline == 0 and parameterCategory == 1 and parameterNumber == 11: return 'Snow Depth' if discipline == 0 and parameterCategory == 1 and parameterNumber == 0: return 'Specific humidity' if discipline == 10 and parameterCategory == 1 and parameterNumber == 3: return 'V-comp of Current' if discipline == 10 and parameterCategory == 1 and parameterNumber == 2: return 'U-comp of Current' if discipline == 10 and parameterCategory == 1 and parameterNumber == 1: return 'Speed of horizontal current' if discipline == 10 and parameterCategory == 1 and parameterNumber == 0: return 'Direction of horizontal current' if discipline == 0 and parameterCategory == 2 and parameterNumber == 6: return 'Montgomery stream function' if discipline == 0 and parameterCategory == 2 and parameterNumber == 5: return 'Velocity potential' if discipline == 0 and parameterCategory == 2 and parameterNumber == 4: return 'Stream function' if discipline == 0 and parameterCategory == 2 and parameterNumber == 1: return 'Wind speed' if discipline == 0 and parameterCategory == 2 and parameterNumber == 0: return 'Wind direction' if discipline == 10 and parameterCategory == 0 and parameterNumber == 2: return 'Wave spectra (3)' if discipline == 10 and parameterCategory == 0 and parameterNumber == 1: return 'Wave spectra (2)' if discipline == 10 and parameterCategory == 0 and parameterNumber == 0: return 'Wave spectra (1)' if discipline == 0 and parameterCategory == 0 and parameterNumber == 2: return 'Potential temperature' if discipline == 0 and parameterCategory == 3 and parameterNumber == 1: return 'Pressure reduced to MSL' if discipline == 0 and parameterCategory == 19 and parameterNumber == 11: return 'Turbulent Kintetic Energy' if discipline == 10 and parameterCategory == 1 and parameterNumber == 3: return 'Current north' if discipline == 10 and parameterCategory == 1 and parameterNumber == 2: return 'Current east' if discipline == 0 and parameterCategory == 191 and parameterNumber == 0: return 'Seconds prior to initial reference time (defined in section1) (meteorology)' if discipline == 0 and parameterCategory == 190 and parameterNumber == 0: return 'Arbitrary text string' if discipline == 0 and parameterCategory == 19 and parameterNumber == 23: return 'Supercooled large droplet probability' if discipline == 0 and parameterCategory == 19 and parameterNumber == 22: return 'Clear air turbulence (CAT)' if discipline == 0 and parameterCategory == 19 and parameterNumber == 21: return 'In-cloud turbulence' if discipline == 0 and parameterCategory == 19 and parameterNumber == 20: return 'Icing' if discipline == 0 and parameterCategory == 19 and parameterNumber == 18: return 'Snow free albedo' if discipline == 0 and parameterCategory == 19 and parameterNumber == 16: return 'Contrail base' if discipline == 0 and parameterCategory == 19 and parameterNumber == 15: return 'Contrail top' if discipline == 0 and parameterCategory == 19 and parameterNumber == 14: return 'Contrail engine type' if discipline == 0 and parameterCategory == 19 and parameterNumber == 13: return 'Contrail intensity' if discipline == 0 and parameterCategory == 19 and parameterNumber == 12: return 'Planetary boundary-layer regime' if discipline == 0 and parameterCategory == 19 and parameterNumber == 10: return 'Turbulence' if discipline == 0 and parameterCategory == 19 and parameterNumber == 9: return 'Turbulence base' if discipline == 0 and parameterCategory == 19 and parameterNumber == 8: return 'Turbulence top' if discipline == 0 and parameterCategory == 19 and parameterNumber == 7: return 'Icing' if discipline == 0 and parameterCategory == 19 and parameterNumber == 6: return 'Icing base' if discipline == 0 and parameterCategory == 19 and parameterNumber == 5: return 'Icing top' if discipline == 0 and parameterCategory == 16 and parameterNumber == 5: return 'Composite reflectivity (radar)' if discipline == 0 and parameterCategory == 16 and parameterNumber == 4: return 'Reflectivity (radar)' if discipline == 0 and parameterCategory == 16 and parameterNumber == 3: return 'Echo top (radar)' if discipline == 0 and parameterCategory == 16 and parameterNumber == 2: return 'Equivalent radar reflectivity factor for paramterized convection' if discipline == 0 and parameterCategory == 16 and parameterNumber == 1: return 'Equivalent radar reflectivity factor for snow' if discipline == 0 and parameterCategory == 16 and parameterNumber == 0: return 'Equivalent radar reflectivity factor for rain' if discipline == 0 and parameterCategory == 15 and parameterNumber == 5: return 'Precipitation (radar)' if discipline == 0 and parameterCategory == 15 and parameterNumber == 4: return 'Layer-maximum base reflectivity' if discipline == 0 and parameterCategory == 15 and parameterNumber == 3: return 'Vertically integrated liquid' if discipline == 0 and parameterCategory == 15 and parameterNumber == 2: return 'Base radial velocity' if discipline == 0 and parameterCategory == 15 and parameterNumber == 1: return 'Base reflectivity' if discipline == 0 and parameterCategory == 15 and parameterNumber == 0: return 'Base spectrum width' if discipline == 0 and parameterCategory == 14 and parameterNumber == 2: return 'Total column integrated ozone' if discipline == 0 and parameterCategory == 14 and parameterNumber == 1: return 'Ozone mixing ratio' if discipline == 0 and parameterCategory == 13 and parameterNumber == 0: return 'Aerosol type' if discipline == 0 and parameterCategory == 7 and parameterNumber == 12: return 'Richardson number' if discipline == 0 and parameterCategory == 7 and parameterNumber == 11: return 'Best (4-layer) lifted index' if discipline == 0 and parameterCategory == 7 and parameterNumber == 10: return 'Surface lifted index' if discipline == 0 and parameterCategory == 7 and parameterNumber == 9: return 'Energy helicity index' if discipline == 0 and parameterCategory == 7 and parameterNumber == 8: return 'Storm relative helicity' if discipline == 0 and parameterCategory == 7 and parameterNumber == 5: return 'Sweat index' if discipline == 0 and parameterCategory == 7 and parameterNumber == 4: return 'Total totals index' if discipline == 0 and parameterCategory == 7 and parameterNumber == 3: return 'KO index' if discipline == 0 and parameterCategory == 7 and parameterNumber == 2: return 'K index' if discipline == 0 and parameterCategory == 6 and parameterNumber == 33: return 'Sunshine duration' if discipline == 0 and parameterCategory == 6 and parameterNumber == 32: return 'Fraction of cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 25: return 'Horizontal extent of cumulunimbus (CB)' if discipline == 0 and parameterCategory == 6 and parameterNumber == 24: return 'Sunshine' if discipline == 0 and parameterCategory == 6 and parameterNumber == 23: return 'Cloud ice mixing ratio' if discipline == 0 and parameterCategory == 6 and parameterNumber == 22: return 'Cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 21: return 'Ice fraction of total condensate' if discipline == 0 and parameterCategory == 6 and parameterNumber == 20: return 'Total column-integrated condensate' if discipline == 0 and parameterCategory == 6 and parameterNumber == 19: return 'Total column-integrated cloud ice' if discipline == 0 and parameterCategory == 6 and parameterNumber == 18: return 'Total column-integrated cloud water' if discipline == 0 and parameterCategory == 6 and parameterNumber == 17: return 'Total condensate' if discipline == 0 and parameterCategory == 6 and parameterNumber == 16: return 'Convective cloud efficiency' if discipline == 0 and parameterCategory == 6 and parameterNumber == 15: return 'Cloud work function' if discipline == 0 and parameterCategory == 6 and parameterNumber == 14: return 'Non-convective cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 13: return 'Ceiling' if discipline == 0 and parameterCategory == 6 and parameterNumber == 12: return 'Cloud top' if discipline == 0 and parameterCategory == 6 and parameterNumber == 11: return 'Cloud base' if discipline == 0 and parameterCategory == 6 and parameterNumber == 10: return 'Thunderstorm coverage' if discipline == 0 and parameterCategory == 6 and parameterNumber == 9: return 'Thunderstorm maximum tops' if discipline == 0 and parameterCategory == 6 and parameterNumber == 8: return 'Cloud type' if discipline == 0 and parameterCategory == 6 and parameterNumber == 7: return 'Cloud amount' if discipline == 0 and parameterCategory == 5 and parameterNumber == 6: return 'Net long-wave radiation flux, clear sky' if discipline == 0 and parameterCategory == 5 and parameterNumber == 5: return 'Net long wave radiation flux' if discipline == 0 and parameterCategory == 5 and parameterNumber == 4: return 'Upward long-wave radiation flux' if discipline == 0 and parameterCategory == 5 and parameterNumber == 3: return 'Downward long-wave radiation flux' if discipline == 0 and parameterCategory == 4 and parameterNumber == 51: return 'UV index' if discipline == 0 and parameterCategory == 4 and parameterNumber == 50: return 'UV index (under clear sky)' if discipline == 0 and parameterCategory == 4 and parameterNumber == 12: return 'Downward UV radiation' if discipline == 0 and parameterCategory == 4 and parameterNumber == 11: return 'Net short-wave radiation flux, clear sky' if discipline == 0 and parameterCategory == 4 and parameterNumber == 10: return 'Photosynthetically active radiation' if discipline == 0 and parameterCategory == 4 and parameterNumber == 9: return 'Net short wave radiation flux' if discipline == 0 and parameterCategory == 4 and parameterNumber == 8: return 'Upward short-wave radiation flux' if discipline == 0 and parameterCategory == 4 and parameterNumber == 7: return 'Downward short-wave radiation flux' if discipline == 0 and parameterCategory == 1 and parameterNumber == 53: return 'Precipitation intensity snow' if discipline == 0 and parameterCategory == 1 and parameterNumber == 52: return 'Precipitation intensity total' if discipline == 0 and parameterCategory == 2 and parameterNumber == 22: return 'Wind gust' if discipline == 3 and parameterCategory == 0 and parameterNumber == 7: return 'cloud mask' if discipline == 0 and parameterCategory == 6 and parameterNumber == 5: return 'High cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 4: return 'Medium cloud cove' if discipline == 0 and parameterCategory == 6 and parameterNumber == 3: return 'Low cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 2: return 'Convective cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 1: return 'Total cloud cover' if discipline == 0 and parameterCategory == 19 and parameterNumber == 2: return 'Probability thunderstorm' if discipline == 0 and parameterCategory == 1 and parameterNumber == 1: return 'Relative humidity' if discipline == 0 and parameterCategory == 19 and parameterNumber == 0: return 'Visibility' if discipline == 0 and parameterCategory == 3 and parameterNumber == 1: return 'Pressure reduced to MSL' if discipline == 0 and parameterCategory == 1 and parameterNumber == 42: return 'Snow cover' if discipline == 0 and parameterCategory == 1 and parameterNumber == 41: return 'Potential evaporation rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 40: return 'Potential evaporation' if discipline == 0 and parameterCategory == 1 and parameterNumber == 39: return 'Percent frozen precipitation' if discipline == 0 and parameterCategory == 1 and parameterNumber == 38: return 'Horizontal moisture divergence' if discipline == 0 and parameterCategory == 1 and parameterNumber == 37: return 'Convective precipitation rate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 36: return 'Categorical snow' if discipline == 0 and parameterCategory == 1 and parameterNumber == 35: return 'Categorical ice pellets' if discipline == 0 and parameterCategory == 1 and parameterNumber == 34: return 'Categorical freezing rain' if discipline == 0 and parameterCategory == 1 and parameterNumber == 33: return 'Categorical rain' if discipline == 0 and parameterCategory == 1 and parameterNumber == 32: return 'Graupel' if discipline == 0 and parameterCategory == 1 and parameterNumber == 31: return 'Hail' if discipline == 0 and parameterCategory == 1 and parameterNumber == 30: return 'Precipitable water category' if discipline == 0 and parameterCategory == 1 and parameterNumber == 26: return 'Horizontal moisture convergence' if discipline == 0 and parameterCategory == 1 and parameterNumber == 25: return 'Snow mixing ratio' if discipline == 0 and parameterCategory == 1 and parameterNumber == 24: return 'Rain mixing ratio' if discipline == 0 and parameterCategory == 1 and parameterNumber == 23: return 'Ice water mixing ratio' if discipline == 0 and parameterCategory == 1 and parameterNumber == 22: return 'Cloud mixing ratio' if discipline == 0 and parameterCategory == 1 and parameterNumber == 21: return 'Condensate' if discipline == 0 and parameterCategory == 1 and parameterNumber == 20: return 'Integrated liquid water' if discipline == 0 and parameterCategory == 1 and parameterNumber == 19: return 'Precipitation type' if discipline == 0 and parameterCategory == 1 and parameterNumber == 18: return 'Absolute humidity' if discipline == 0 and parameterCategory == 1 and parameterNumber == 17: return 'Snow age' if discipline == 0 and parameterCategory == 0 and parameterNumber == 17: return 'Skin temperature' if discipline == 0 and parameterCategory == 0 and parameterNumber == 16: return 'Snow phase change heat flux' if discipline == 0 and parameterCategory == 0 and parameterNumber == 13: return 'Wind chill factor' if discipline == 0 and parameterCategory == 0 and parameterNumber == 12: return 'Heat index' if discipline == 0 and parameterCategory == 0 and parameterNumber == 15: return 'Virtual potential temperature' if discipline == 0 and parameterCategory == 6 and parameterNumber == 12: return 'Cloud top of significant clouds' if discipline == 0 and parameterCategory == 6 and parameterNumber == 11: return 'Cloud base of significant clouds' if discipline == 0 and parameterCategory == 6 and parameterNumber == 5: return 'High cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 4: return 'Medium cloud cove' if discipline == 0 and parameterCategory == 6 and parameterNumber == 3: return 'Low cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 1: return 'Total cloud cover' if discipline == 0 and parameterCategory == 1 and parameterNumber == 1: return 'Relative humidity' if discipline == 0 and parameterCategory == 2 and parameterNumber == 22: return 'Wind gusts' if discipline == 0 and parameterCategory == 19 and parameterNumber == 0: return 'Visibility' if discipline == 0 and parameterCategory == 0 and parameterNumber == 5: return 'Minimum temperature' if discipline == 0 and parameterCategory == 0 and parameterNumber == 4: return 'Maximum temperature' if discipline == 0 and parameterCategory == 3 and parameterNumber == 1: return 'Pressure reduced to MSL' if discipline == 0 and parameterCategory == 19 and parameterNumber == 0: return 'VIS/Visibility [m]' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 62000: return 'PM/Total particulate matter' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 40009: return 'PM2.5/PM2.5 particles' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 62012: return 'SOA/Secondary Organic Aerosol' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63016: return 'PNHX/Particulate ammonium' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63015: return 'PNOX/Particulate nitrate' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63014: return 'PSOX/Particulate sulfate' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 40008: return 'PM10/PM10 particles' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63018: return 'PMASS/Particle mass conc' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63017: return 'PNUMBER/Number concentration' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 62001: return 'DUST/Dust (particles)' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 40008: return 'PMCOARSE/Coarse particles' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 40009: return 'PMFINE' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 62008: return 'NACL' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 23: return 'Rn222/Rn222' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63012: return 'EC/Elementary carbon (particles)' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63013: return 'OC/Organic carbon (particles)' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 2: return 'CH4/CH4' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 3: return 'CO2/CO2' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 4: return 'CO/CO' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10000: return 'OH/OH' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 19: return 'H2O2/H2O2' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 0: return 'O3' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63004: return 'NHX_N/All reduced nitrogen (as nitrogen)' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10: return 'NH4(+1)/NH4' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 9: return 'NH3/NH3' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 60004: return 'NOY_N/All oxidised N-compounds (as nitrogen)' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 60003: return 'NOX_N/NO2+NO (NOx) as nitrogen' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63001: return 'NOX/NOX as NO2' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63009: return 'NITRATE/NITRATE' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63007: return 'NH4NO3/NH4NO3' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 17: return 'HNO3/HNO3' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 5: return 'NO2/NO2' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 11: return 'NO' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63005: return 'SOX_S/All oxidised sulphur compounds (as sulphur)' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63008: return 'SULFATE/SULFATE' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 63006: return 'NH42SO4/(NH4)2SO4' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 10500: return 'DMS/DMS' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 22: return 'SO4(2-)/SO4(2-) (sulphate)' if discipline == 0 and parameterCategory == 20 and atmosphericChemicalConsituentType == 8: return 'SO2/SO2' if discipline == 0 and parameterCategory == 2 and parameterNumber == 22: return 'Wind gust' if discipline == 0 and parameterCategory == 2 and parameterNumber == 30: return 'Friction velocity' if discipline == 0 and parameterCategory == 7 and parameterNumber == 6: return 'CAPE' if discipline == 0 and parameterCategory == 7 and parameterNumber == 7: return 'Convective inhibation' if discipline == 0 and parameterCategory == 19 and parameterNumber == 11: return 'Turbulent Kinetic Energy' if discipline == 2 and parameterCategory == 3 and parameterNumber == 0: return 'Soil type' if discipline == 0 and parameterCategory == 1 and parameterNumber == 61: return 'Snow density' if discipline == 0 and parameterCategory == 19 and parameterNumber == 19: return 'Snow albedo' if discipline == 0 and parameterCategory == 3 and parameterNumber == 22: return 'Slope fraction' if discipline == 0 and parameterCategory == 1 and parameterNumber == 11: return 'Snow depth, cold snow' if discipline == 0 and parameterCategory == 6 and parameterNumber == 20: return 'Integrated cloud condensate' if discipline == 0 and parameterCategory == 2 and parameterNumber == 21: return 'Maximum wind' if discipline == 0 and parameterCategory == 2 and parameterNumber == 19: return 'Wind mixing energy' if discipline == 0 and parameterCategory == 2 and parameterNumber == 18: return 'Momentum flux, v component' if discipline == 0 and parameterCategory == 2 and parameterNumber == 17: return 'Momentum flux, u component' if discipline == 0 and parameterCategory == 2 and parameterNumber == 20: return 'Boundary layer dissipation' if discipline == 0 and parameterCategory == 0 and parameterNumber == 11: return 'Sensible heat net flux' if discipline == 0 and parameterCategory == 0 and parameterNumber == 10: return 'Latent heat net flux' if discipline == 0 and parameterCategory == 4 and parameterNumber == 6: return 'Radiance (with respect to wave length)' if discipline == 0 and parameterCategory == 4 and parameterNumber == 5: return 'Radiance (with respect to wave number)' if discipline == 0 and parameterCategory == 4 and parameterNumber == 4: return 'Brightness temperature' if discipline == 0 and parameterCategory == 4 and parameterNumber == 3: return 'Global radiation flux' if discipline == 0 and parameterCategory == 4 and parameterNumber == 2: return 'Short wave radiation flux' if discipline == 0 and parameterCategory == 5 and parameterNumber == 2: return 'Long wave radiation flux' if discipline == 0 and parameterCategory == 5 and parameterNumber == 1: return 'Net long wave radiation flux (top of atmos.)' if discipline == 0 and parameterCategory == 4 and parameterNumber == 1: return 'Net short wave radiation flux (top of atmos.)' if discipline == 0 and parameterCategory == 5 and parameterNumber == 0: return 'Net long wave radiation flux (surface)' if discipline == 0 and parameterCategory == 4 and parameterNumber == 0: return 'Net short wave radiation flux (surface)' if discipline == 10 and parameterCategory == 0 and parameterNumber == 13: return 'Secondary wave mean period' if discipline == 10 and parameterCategory == 0 and parameterNumber == 12: return 'Secondary wave direction' if discipline == 10 and parameterCategory == 0 and parameterNumber == 11: return 'Primary wave mean period' if discipline == 10 and parameterCategory == 0 and parameterNumber == 10: return 'Primary wave direction' if discipline == 10 and parameterCategory == 0 and parameterNumber == 9: return 'Mean period of swell waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 8: return 'Significant height of swell waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 7: return 'Direction of swell waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 6: return 'Mean period of wind waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 5: return 'Significant height of wind waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 4: return 'Direction of wind waves' if discipline == 10 and parameterCategory == 0 and parameterNumber == 3: return 'Significant height of combined wind waves and swell' if discipline == 0 and parameterCategory == 1 and parameterNumber == 16: return 'Snow melt' if discipline == 10 and parameterCategory == 2 and parameterNumber == 7: return 'Ice divergence' if discipline == 10 and parameterCategory == 2 and parameterNumber == 6: return 'Ice growth rate' if discipline == 10 and parameterCategory == 2 and parameterNumber == 5: return 'v-component of ice drift' if discipline == 10 and parameterCategory == 2 and parameterNumber == 4: return 'u-component of ice drift' if discipline == 10 and parameterCategory == 2 and parameterNumber == 3: return 'Speed of ice drift' if discipline == 10 and parameterCategory == 2 and parameterNumber == 2: return 'Direction of ice drift' if discipline == 10 and parameterCategory == 2 and parameterNumber == 1: return 'Ice thickness' if discipline == 10 and parameterCategory == 2 and parameterNumber == 0: return 'Ice cover (ice=1 no ice=0)(see note)' if discipline == 2 and parameterCategory == 0 and parameterNumber == 5: return 'Water run off' if discipline == 0 and parameterCategory == 3 and parameterNumber == 10: return 'Density' if discipline == 10 and parameterCategory == 4 and parameterNumber == 3: return 'Salinity' if discipline == 2 and parameterCategory == 0 and parameterNumber == 4: return 'Vegetation' if discipline == 2 and parameterCategory == 0 and parameterNumber == 3: return 'Soil moisture content' if discipline == 2 and parameterCategory == 0 and parameterNumber == 2: return 'Soil temperature' if discipline == 0 and parameterCategory == 19 and parameterNumber == 1: return 'Albedo' if discipline == 2 and parameterCategory == 0 and parameterNumber == 1: return 'Surface roughness' if discipline == 10 and parameterCategory == 3 and parameterNumber == 1: return 'Deviation of sea level from mean' if discipline == 2 and parameterCategory == 0 and parameterNumber == 0: return 'Land-sea mask (1=land 0=sea) (see note)' if discipline == 10 and parameterCategory == 3 and parameterNumber == 0: return 'Water Temperature' if discipline == 0 and parameterCategory == 1 and parameterNumber == 15: return 'Large scale snow' if discipline == 0 and parameterCategory == 1 and parameterNumber == 14: return 'Convective snow' if discipline == 0 and parameterCategory == 7 and parameterNumber == 1: return 'Best lifted index (to 500 hPa)' if discipline == 0 and parameterCategory == 6 and parameterNumber == 6: return 'Cloud water' if discipline == 0 and parameterCategory == 6 and parameterNumber == 5: return 'High cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 4: return 'Medium cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 3: return 'Low cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 2: return 'Convective cloud cover' if discipline == 0 and parameterCategory == 6 and parameterNumber == 1: return 'Total cloud cover' if discipline == 10 and parameterCategory == 4 and parameterNumber == 1: return 'Main thermocline anomaly' if discipline == 10 and parameterCategory == 4 and parameterNumber == 0: return 'Main thermocline depth' if discipline == 10 and parameterCategory == 4 and parameterNumber == 2: return 'Transient thermocline depth' if discipline == 0 and parameterCategory == 19 and parameterNumber == 3: return 'Mixed layer depth' if discipline == 0 and parameterCategory == 1 and parameterNumber == 11: return 'Snow depth' if discipline == 0 and parameterCategory == 1 and parameterNumber == 13: return 'Water equiv. of accum. snow depth' if discipline == 0 and parameterCategory == 1 and parameterNumber == 12: return 'Snowfall rate water equivalent' if discipline == 0 and parameterCategory == 1 and parameterNumber == 10: return 'Convective precipitation' if discipline == 0 and parameterCategory == 1 and parameterNumber == 9: return 'Large scale precipitation' if discipline == 0 and parameterCategory == 1 and parameterNumber == 8: return 'Total precipitation' if discipline == 0 and parameterCategory == 19 and parameterNumber == 2: return 'Thunderstorm probability' if discipline == 0 and parameterCategory == 1 and parameterNumber == 7: return 'Precipitation rate' if discipline == 0 and parameterCategory == 6 and parameterNumber == 0: return 'Cloud Ice' if discipline == 0 and parameterCategory == 1 and parameterNumber == 6: return 'Evaporation' if discipline == 0 and parameterCategory == 1 and parameterNumber == 5: return 'Saturation deficit' if discipline == 0 and parameterCategory == 1 and parameterNumber == 4: return 'Vapour pressure' if discipline == 0 and parameterCategory == 1 and parameterNumber == 3: return 'Precipitable water' if discipline == 0 and parameterCategory == 1 and parameterNumber == 2: return 'Humidity mixing ratio' if discipline == 0 and parameterCategory == 1 and parameterNumber == 1: return 'Relative humidity' if discipline == 0 and parameterCategory == 1 and parameterNumber == 0: return 'Specific humidity' if discipline == 10 and parameterCategory == 1 and parameterNumber == 3: return 'v-component of current' if discipline == 10 and parameterCategory == 1 and parameterNumber == 2: return 'u-component of current' if discipline == 10 and parameterCategory == 1 and parameterNumber == 1: return 'Speed of current' if discipline == 10 and parameterCategory == 1 and parameterNumber == 0: return 'Direction of current' if discipline == 0 and parameterCategory == 2 and parameterNumber == 16: return 'Vertical v-component shear' if discipline == 0 and parameterCategory == 2 and parameterNumber == 15: return 'Vertical u-component shear' if discipline == 0 and parameterCategory == 2 and parameterNumber == 13: return 'Relative divergence' if discipline == 0 and parameterCategory == 2 and parameterNumber == 12: return 'Relative vorticity' if discipline == 0 and parameterCategory == 2 and parameterNumber == 11: return 'Absolute divergence' if discipline == 0 and parameterCategory == 2 and parameterNumber == 10: return 'Absolute vorticity' if discipline == 0 and parameterCategory == 2 and parameterNumber == 9: return 'Geometric Vertical velocity' if discipline == 0 and parameterCategory == 2 and parameterNumber == 8: return 'Pressure Vertical velocity' if discipline == 0 and parameterCategory == 2 and parameterNumber == 7: return 'Sigma coord. vertical velocity' if discipline == 0 and parameterCategory == 2 and parameterNumber == 6: return 'Montgomery stream function' if discipline == 0 and parameterCategory == 2 and parameterNumber == 5: return 'Velocity potential' if discipline == 0 and parameterCategory == 2 and parameterNumber == 4: return 'Stream function' if discipline == 0 and parameterCategory == 2 and parameterNumber == 3: return 'v-component of wind' if discipline == 0 and parameterCategory == 2 and parameterNumber == 2: return 'u-component of wind' if discipline == 0 and parameterCategory == 2 and parameterNumber == 1: return 'Wind speed' if discipline == 0 and parameterCategory == 2 and parameterNumber == 0: return 'Wind direction' if discipline == 10 and parameterCategory == 0 and parameterNumber == 2: return 'Wave Spectra (3)' if discipline == 10 and parameterCategory == 0 and parameterNumber == 1: return 'Wave Spectra (2)' if discipline == 10 and parameterCategory == 0 and parameterNumber == 0: return 'Wave Spectra (1)' if discipline == 0 and parameterCategory == 3 and parameterNumber == 9: return 'Geopotential height anomaly' if discipline == 0 and parameterCategory == 3 and parameterNumber == 8: return 'Pressure anomaly' if discipline == 0 and parameterCategory == 0 and parameterNumber == 9: return 'Temperature anomaly' if discipline == 0 and parameterCategory == 7 and parameterNumber == 0: return 'Parcel lifted index (to 500 hPa)' if discipline == 0 and parameterCategory == 15 and parameterNumber == 8: return 'Radar Spectra (3)' if discipline == 0 and parameterCategory == 15 and parameterNumber == 7: return 'Radar Spectra (2)' if discipline == 0 and parameterCategory == 15 and parameterNumber == 6: return 'Radar Spectra (1)' if discipline == 0 and parameterCategory == 19 and parameterNumber == 0: return 'Visibility' if discipline == 0 and parameterCategory == 0 and parameterNumber == 8: return 'Lapse rate' if discipline == 0 and parameterCategory == 0 and parameterNumber == 7: return 'Dew point depression (or deficit)' if discipline == 0 and parameterCategory == 0 and parameterNumber == 6: return 'Dew point temperature' if discipline == 0 and parameterCategory == 0 and parameterNumber == 5: return 'Minimum temperature' if discipline == 0 and parameterCategory == 0 and parameterNumber == 4: return 'Maximum temperature' if discipline == 0 and parameterCategory == 0 and parameterNumber == 3: return 'Pseudo-adiabatic potential temperature' if discipline == 0 and parameterCategory == 0 and parameterNumber == 2: return 'Potential temperature' if discipline == 0 and parameterCategory == 0 and parameterNumber == 1: return 'Virtual temperature' if discipline == 0 and parameterCategory == 0 and parameterNumber == 0: return 'Temperature' if discipline == 0 and parameterCategory == 14 and parameterNumber == 0: return 'Total ozone' if discipline == 0 and parameterCategory == 3 and parameterNumber == 7: return 'Standard deviation of height' if discipline == 0 and parameterCategory == 3 and parameterNumber == 6: return 'Geometric height' if discipline == 0 and parameterCategory == 3 and parameterNumber == 5: return 'Geopotential height' if discipline == 0 and parameterCategory == 3 and parameterNumber == 4: return 'Geopotential' if discipline == 0 and parameterCategory == 3 and parameterNumber == 3: return 'ICAO Standard Atmosphere reference height' if discipline == 0 and parameterCategory == 2 and parameterNumber == 14: return 'Potential vorticity' if discipline == 0 and parameterCategory == 3 and parameterNumber == 2: return 'Pressure tendency' if discipline == 0 and parameterCategory == 3 and parameterNumber == 1: return 'Pressure reduced to MSL' if discipline == 0 and parameterCategory == 3 and parameterNumber == 0: return 'Pressure' return wrapped
42.646205
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0.086385
0.145546
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0.847128
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0
0
0
4
a96d1ad4941b2f2e2aed74363daf53f8103f7801
54
py
Python
configs/postgres.py
enabokov/chat
4a3a11c68c5089c119ebe5bec1dfebe699aa7c78
[ "MIT" ]
1
2019-04-14T16:49:32.000Z
2019-04-14T16:49:32.000Z
configs/postgres.py
enabokov/Chat
4a3a11c68c5089c119ebe5bec1dfebe699aa7c78
[ "MIT" ]
1
2021-03-25T21:44:52.000Z
2021-03-25T21:44:52.000Z
configs/postgres.py
enabokov/chat
4a3a11c68c5089c119ebe5bec1dfebe699aa7c78
[ "MIT" ]
null
null
null
DSN = 'postgresql://edward:edward@postgres:5432/chat'
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4
8d21b09432278f9368a292eca49b25d9da12e492
88
py
Python
apps/salt/apps.py
plsof/tabops_api
39f5d2fd5158ae0c22e43ab6ff7e2b07a68a62d8
[ "MIT" ]
1
2019-07-31T07:34:38.000Z
2019-07-31T07:34:38.000Z
apps/salt/apps.py
plsof/tabops_api
39f5d2fd5158ae0c22e43ab6ff7e2b07a68a62d8
[ "MIT" ]
9
2019-12-05T00:39:29.000Z
2022-02-10T14:13:29.000Z
apps/salt/apps.py
plsof/tabops_api
39f5d2fd5158ae0c22e43ab6ff7e2b07a68a62d8
[ "MIT" ]
null
null
null
from django.apps import AppConfig class SaltConfig(AppConfig): name = 'apps.salt'
14.666667
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0.738636
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88
5.909091
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4
8d7113f4a3fa2caf2cf878a899bd18ce82a24a1b
103
py
Python
article/serializers/__init__.py
mentix02/medialist-backend
397b1a382b12bab273360dadb0b3c32de43747cd
[ "MIT" ]
1
2019-11-22T19:29:39.000Z
2019-11-22T19:29:39.000Z
article/serializers/__init__.py
mentix02/medialist-backend
397b1a382b12bab273360dadb0b3c32de43747cd
[ "MIT" ]
1
2019-11-25T09:50:07.000Z
2021-07-15T07:05:28.000Z
article/serializers/__init__.py
mentix02/medialist-backend
397b1a382b12bab273360dadb0b3c32de43747cd
[ "MIT" ]
null
null
null
from article.serializers.serializers import ( ArticleListSerializer, ArticleDetailSerializer )
20.6
45
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103
11.857143
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0
0
0
0
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4
8d86e19a0f7bf48d0eb61da351363ace81caa8fc
353
py
Python
greetings.py
ucsd-cse-spis-2016/spis16-lecture-0815
24e0a8ea9726f969eb357db33eb2925aabd25e43
[ "MIT" ]
null
null
null
greetings.py
ucsd-cse-spis-2016/spis16-lecture-0815
24e0a8ea9726f969eb357db33eb2925aabd25e43
[ "MIT" ]
null
null
null
greetings.py
ucsd-cse-spis-2016/spis16-lecture-0815
24e0a8ea9726f969eb357db33eb2925aabd25e43
[ "MIT" ]
null
null
null
from flask import Flask app = Flask(__name__) @app.route("/en") def hello(): return "Hello SPIS 2016!" @app.route("/cn") def ni_hao(): return "Ni Hao SPIS 2016!" @app.route("/es") def hola(): return "Hola SPIS 2016!" @app.route("/fa") def sobh_bx(): return "Sobh Bexair SPIS 2016!" if __name__ == "__main__": app.run(port=5000)
16.045455
35
0.628895
54
353
3.851852
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0.230769
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353
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0
0
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1
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0
4
57172ba3fed738751a65af00ff67b7037fd96b96
206
py
Python
qclib/qclab.py
hagne/qclib
c90e06cb22708d610126710715a5d66bd4dc0898
[ "MIT" ]
null
null
null
qclib/qclab.py
hagne/qclib
c90e06cb22708d610126710715a5d66bd4dc0898
[ "MIT" ]
null
null
null
qclib/qclab.py
hagne/qclib
c90e06cb22708d610126710715a5d66bd4dc0898
[ "MIT" ]
null
null
null
# -*- coding: utf-8 -*- import qclib.tag_times def qc_by_tagging_times(path2data, path2database): out = qclib.tag_times.Controller(path2data=path2data, path2database=path2database) return out
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0
0
0
1
0
0
4
571ee3c5442f3448677cce9af4cb7b0165e2aa98
148
py
Python
tests/test_tail_chunks.py
moskytw/tacit
58286a71140be150438d10acf93028ef5f78f6d1
[ "MIT" ]
null
null
null
tests/test_tail_chunks.py
moskytw/tacit
58286a71140be150438d10acf93028ef5f78f6d1
[ "MIT" ]
null
null
null
tests/test_tail_chunks.py
moskytw/tacit
58286a71140be150438d10acf93028ef5f78f6d1
[ "MIT" ]
null
null
null
#!/usr/bin/env python # -*- coding: utf-8 -*- from tacit import tac_slices for chunk in tac_slices('data/ordered.list', 2): print repr(chunk)
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7
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1
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0
0
0
4
572a6ba98328eb8f0c8ea9e03989e22fca55780e
271
py
Python
backend/users/serializers.py
rmisiarek/django_vue_base
440459fdd73209e47567fb3572c056a05dc1c45a
[ "MIT" ]
2
2019-04-28T20:26:13.000Z
2020-05-04T03:18:23.000Z
backend/users/serializers.py
rmisiarek/django_vue_base
440459fdd73209e47567fb3572c056a05dc1c45a
[ "MIT" ]
22
2019-12-04T22:34:42.000Z
2022-02-12T07:12:29.000Z
backend/users/serializers.py
shrekdev/Django_Vue_Base
4f200358724bce137f9c5e723036b280e4fd81e2
[ "MIT" ]
null
null
null
from djoser.serializers import UserCreateSerializer from .models import CustomUser class CustomUserRegistrationSerializer(UserCreateSerializer): class Meta(UserCreateSerializer.Meta): model = CustomUser fields = ('first_name', 'email', 'password')
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9
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4
572d902af0ded1f19ce7ceba83a724a3db7dd67b
30
py
Python
flaskslack/__init__.py
Jamiewu2/flask-slack-template
8a2168aaab03ed080a3eab186c20a488cdf2055e
[ "MIT" ]
null
null
null
flaskslack/__init__.py
Jamiewu2/flask-slack-template
8a2168aaab03ed080a3eab186c20a488cdf2055e
[ "MIT" ]
null
null
null
flaskslack/__init__.py
Jamiewu2/flask-slack-template
8a2168aaab03ed080a3eab186c20a488cdf2055e
[ "MIT" ]
null
null
null
name = "flask_slack_template"
15
29
0.8
4
30
5.5
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30
30
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0
0
0
0
0
0
0
4
939077a570d47a79177487efee3028816d6b91da
421
py
Python
trains/models.py
Seshathri-saravanan/quest
397c92e36167b9554fd72f55bdac0a2cbcdfea6f
[ "MIT" ]
null
null
null
trains/models.py
Seshathri-saravanan/quest
397c92e36167b9554fd72f55bdac0a2cbcdfea6f
[ "MIT" ]
null
null
null
trains/models.py
Seshathri-saravanan/quest
397c92e36167b9554fd72f55bdac0a2cbcdfea6f
[ "MIT" ]
1
2021-11-09T15:58:33.000Z
2021-11-09T15:58:33.000Z
from django.db import models class Train(models.Model): no = models.CharField(max_length=20) destination = models.CharField(max_length=50) source = models.CharField(max_length=50) days = models.CharField(max_length=10) name = models.CharField(max_length=50) arrival = models.CharField(max_length=20) departure = models.CharField(max_length=20) def __str__(self): return self.name
32.384615
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421
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0.357143
0.428571
0.571429
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93ea9b725dcae36d582332e92813504608956ade
49
py
Python
src/fseq/__init__.py
tanioklyce/python-fseq
be0d5d895ead1b099dd0d47602520c9ebf1f449d
[ "MIT" ]
3
2019-12-07T19:32:32.000Z
2021-12-27T05:19:26.000Z
src/fseq/__init__.py
tanioklyce/python-fseq
be0d5d895ead1b099dd0d47602520c9ebf1f449d
[ "MIT" ]
3
2020-01-05T03:05:58.000Z
2021-04-24T06:28:16.000Z
src/fseq/__init__.py
tanioklyce/python-fseq
be0d5d895ead1b099dd0d47602520c9ebf1f449d
[ "MIT" ]
4
2020-03-13T17:49:06.000Z
2022-03-14T01:26:28.000Z
__version__ = '0.1.0' from .parser import parse
12.25
25
0.714286
8
49
3.875
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49
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4
93f8df4d6dce3b4bf4d20eae42a3c300c4be5bdc
139,378
py
Python
rcsb/utils/dictionary/DictMethodEntityInstanceHelper.py
rcsb/py-rcsb_utils_dictionary
459f759ed7bc267ef63f57b230974afe555d9157
[ "Apache-2.0" ]
2
2022-01-22T16:23:44.000Z
2022-01-22T20:28:34.000Z
rcsb/utils/dictionary/DictMethodEntityInstanceHelper.py
rcsb/py-rcsb_utils_dictionary
459f759ed7bc267ef63f57b230974afe555d9157
[ "Apache-2.0" ]
4
2021-11-23T15:27:49.000Z
2022-03-30T19:51:43.000Z
rcsb/utils/dictionary/DictMethodEntityInstanceHelper.py
rcsb/py-rcsb_utils_dictionary
459f759ed7bc267ef63f57b230974afe555d9157
[ "Apache-2.0" ]
2
2022-01-22T16:23:46.000Z
2022-03-27T18:01:42.000Z
## # File: DictMethodEntityInstanceHelper.py # Author: J. Westbrook # Date: 16-Jul-2019 # Version: 0.001 Initial version # # # Updates: # 22-Nov-2021 dwp authSeqBeg and authSeqEnd are returned as integers but must be compared as strings in pAuthAsymD # ## """ This helper class implements methods supporting entity-instance-level functions in the RCSB dictionary extension. """ __docformat__ = "google en" __author__ = "John Westbrook" __email__ = "jwest@rcsb.rutgers.edu" __license__ = "Apache 2.0" # pylint: disable=too-many-lines import logging import re import time from collections import OrderedDict from mmcif.api.DataCategory import DataCategory from rcsb.utils.dictionary.DictMethodSecStructUtils import DictMethodSecStructUtils logger = logging.getLogger(__name__) class DictMethodEntityInstanceHelper(object): """This helper class implements methods supporting entity-instance-level functions in the RCSB dictionary extension.""" def __init__(self, **kwargs): """ Args: resourceProvider: (obj) instance of DictMethodResourceProvider() raiseExceptions: (bool, optional) flag to raise rather than handle exceptions """ # self._raiseExceptions = kwargs.get("raiseExceptions", False) self.__wsPattern = re.compile(r"\s+", flags=re.UNICODE | re.MULTILINE) self.__reNonDigit = re.compile(r"[^\d]+") # rP = kwargs.get("resourceProvider") self.__commonU = rP.getResource("DictMethodCommonUtils instance") if rP else None # dapw = rP.getResource("DictionaryAPIProviderWrapper instance") if rP else None # self.__dApi = dapw.getApiByName("pdbx_core") if dapw else None self.__dApi = kwargs.get("dictionaryApi", None) if self.__dApi: logger.debug("Loaded API for: %r", self.__dApi.getDictionaryTitle()) else: logger.error("Missing dictionary API %r", kwargs) # self.__ccP = rP.getResource("ChemCompProvider instance") if rP else None self.__rlsP = rP.getResource("RcsbLigandScoreProvider instance") if rP else None self.__niP = rP.getResource("NeighborInteractionProvider instance") if rP else None # self.__ssU = DictMethodSecStructUtils(rP, raiseExceptions=self._raiseExceptions) # logger.debug("Dictionary entity-instance level method helper init") def buildContainerEntityInstanceIds(self, dataContainer, catName, **kwargs): """ Build: loop_ _rcsb_entity_instance_container_identifiers.entry_id _rcsb_entity_instance_container_identifiers.entity_id _rcsb_entity_instance_container_identifiers.entity_type _rcsb_entity_instance_container_identifiers.asym_id _rcsb_entity_instance_container_identifiers.auth_asym_id _rcsb_entity_instance_container_identifiers.comp_id _rcsb_entity_instance_container_identifiers.auth_seq_id ... """ logger.debug("Starting catName %s kwargs %r", catName, kwargs) try: if not (dataContainer.exists("entry") and dataContainer.exists("entity")): return False if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) # cObj = dataContainer.getObj(catName) asymD = self.__commonU.getInstanceIdMap(dataContainer) npAuthAsymD = self.__commonU.getNonPolymerIdMap(dataContainer) brAuthAsymD = self.__commonU.getBranchedIdMap(dataContainer) seqIdMapAsymD = self.__commonU.getAuthToSeqIdMap(dataContainer) # for ii, asymId in enumerate(sorted(asymD)): for k, v in asymD[asymId].items(): cObj.setValue(v, k, ii) v = ",".join(seqIdMapAsymD[asymId]) if asymId in seqIdMapAsymD else "?" cObj.setValue(v, "auth_to_entity_poly_seq_mapping", ii) ok = self.__addPdbxValidateAsymIds(dataContainer, asymD, npAuthAsymD, brAuthAsymD) return ok except Exception as e: logger.exception("For %s failing with %s", catName, str(e)) return False def __addPdbxValidateAsymIds(self, dataContainer, asymMapD, npAuthAsymMapD, brAuthAsymMapD): """Internal method to insert Asym_id's into the following categories: _pdbx_validate_close_contact.rcsb_label_asym_id_1 _pdbx_validate_close_contact.rcsb_label_asym_id_2 _pdbx_validate_symm_contact.rcsb_label_asym_id_1 _pdbx_validate_symm_contact.rcsb_label_asym_id_2 _pdbx_validate_rmsd_bond.rcsb_label_asym_id_1 _pdbx_validate_rmsd_bond.rcsb_label_asym_id_2 _pdbx_validate_rmsd_angle.rcsb_label_asym_id_1 _pdbx_validate_rmsd_angle.rcsb_label_asym_id_2 _pdbx_validate_rmsd_angle.rcsb_label_asym_id_3 _pdbx_validate_torsion.rcsb_label_asym_id _pdbx_validate_peptide_omega.rcsb_label_asym_id_1 _pdbx_validate_peptide_omega.rcsb_label_asym_id_2 _pdbx_validate_chiral.rcsb_label_asym_id _pdbx_validate_planes.rcsb_label_asym_id _pdbx_validate_planes_atom.rcsb_label_asym_id _pdbx_validate_main_chain_plane.rcsb_label_asym_id _pdbx_validate_polymer_linkage.rcsb_label_asym_id_1 _pdbx_validate_polymer_linkage.rcsb_label_asym_id_2 """ # mD = { "pdbx_validate_close_contact": [("auth_asym_id_1", "auth_seq_id_1", "rcsb_label_asym_id_1"), ("auth_asym_id_2", "auth_seq_id_2", "rcsb_label_asym_id_2")], "pdbx_validate_symm_contact": [("auth_asym_id_1", "auth_seq_id_1", "rcsb_label_asym_id_1"), ("auth_asym_id_2", "auth_seq_id_2", "rcsb_label_asym_id_2")], "pdbx_validate_rmsd_bond": [("auth_asym_id_1", "auth_seq_id_1", "rcsb_label_asym_id_1"), ("auth_asym_id_2", "auth_seq_id_2", "rcsb_label_asym_id_2")], "pdbx_validate_rmsd_angle": [ ("auth_asym_id_1", "auth_seq_id_1", "rcsb_label_asym_id_1"), ("auth_asym_id_2", "auth_seq_id_2", "rcsb_label_asym_id_2"), ("auth_asym_id_3", "auth_seq_id_3", "rcsb_label_asym_id_3"), ], "pdbx_validate_torsion": [("auth_asym_id", "auth_seq_id", "rcsb_label_asym_id")], "pdbx_validate_peptide_omega": [("auth_asym_id_1", "auth_seq_id_1", "rcsb_label_asym_id_1"), ("auth_asym_id_2", "auth_seq_id_2", "rcsb_label_asym_id_2")], "pdbx_validate_chiral": [("auth_asym_id", "auth_seq_id", "rcsb_label_asym_id")], "pdbx_validate_planes": [("auth_asym_id", "auth_seq_id", "rcsb_label_asym_id")], "pdbx_validate_planes_atom": [("auth_asym_id", "auth_seq_id", "rcsb_label_asym_id")], "pdbx_validate_main_chain_plane": [("auth_asym_id", "auth_seq_id", "rcsb_label_asym_id")], "pdbx_validate_polymer_linkage": [("auth_asym_id_1", "auth_seq_id_1", "rcsb_label_asym_id_1"), ("auth_asym_id_2", "auth_seq_id_2", "rcsb_label_asym_id_2")], "pdbx_distant_solvent_atoms": [("auth_asym_id", "auth_seq_id", "rcsb_label_asym_id")], } # -- JDW # polymer lookup authAsymD = {} for asymId, dD in asymMapD.items(): if dD["entity_type"].lower() in ["polymer", "branched"]: authAsymD[(dD["auth_asym_id"], "?")] = asymId # # non-polymer lookup # logger.debug("%s authAsymD %r", dataContainer.getName(), authAsymD) for (authAsymId, seqId), dD in npAuthAsymMapD.items(): if dD["entity_type"].lower() not in ["polymer", "branched"]: authAsymD[(authAsymId, seqId)] = dD["asym_id"] # # branched lookup logger.debug("%s authAsymD %r", dataContainer.getName(), authAsymD) for (authAsymId, seqId), dD in brAuthAsymMapD.items(): if dD["entity_type"].lower() in ["branched"]: authAsymD[(authAsymId, seqId)] = dD["asym_id"] # # for catName, mTupL in mD.items(): if not dataContainer.exists(catName): continue cObj = dataContainer.getObj(catName) for ii in range(cObj.getRowCount()): for mTup in mTupL: try: authVal = cObj.getValue(mTup[0], ii) except Exception: authVal = "?" try: authSeqId = cObj.getValue(mTup[1], ii) except Exception: authSeqId = "?" # authVal = cObj.getValue(mTup[0], ii) # authSeqId = cObj.getValue(mTup[1], ii) # # logger.debug("%s %4d authAsymId %r authSeqId %r" % (catName, ii, authVal, authSeqId)) # if (authVal, authSeqId) in authAsymD: if not cObj.hasAttribute(mTup[2]): cObj.appendAttribute(mTup[2]) cObj.setValue(authAsymD[(authVal, authSeqId)], mTup[2], ii) elif (authVal, "?") in authAsymD: if not cObj.hasAttribute(mTup[2]): cObj.appendAttribute(mTup[2]) cObj.setValue(authAsymD[(authVal, "?")], mTup[2], ii) else: if authVal not in ["."]: logger.warning("%s %s missing mapping auth asymId %s authSeqId %r", dataContainer.getName(), catName, authVal, authSeqId) if not cObj.hasAttribute(mTup[2]): cObj.appendAttribute(mTup[2]) cObj.setValue("?", mTup[2], ii) return True def __initializeInstanceFeatureType(self, dataContainer, asymId, fCountD, countType="set"): instTypeD = self.__commonU.getInstanceTypes(dataContainer) eTupL = [] eType = instTypeD[asymId] if eType == "polymer": eTupL = self.__dApi.getEnumListWithDetail("rcsb_polymer_instance_feature_summary", "type") elif eType in ["non-polymer", "water"]: eTupL = self.__dApi.getEnumListWithDetail("rcsb_nonpolymer_instance_feature_summary", "type") elif eType == "branched": eTupL = self.__dApi.getEnumListWithDetail("rcsb_branched_instance_feature_summary", "type") else: logger.error("%r asymId %r eType %r", dataContainer.getName(), asymId, eType) # fTypeL = sorted([tup[0] for tup in eTupL]) # for fType in fTypeL: if countType == "set": fCountD.setdefault(asymId, {}).setdefault(fType, set()) else: fCountD.setdefault(asymId, {}).setdefault(fType, []) # return fCountD def buildEntityInstanceFeatures(self, dataContainer, catName, **kwargs): """Build category rcsb_entity_instance_feature ... Example: loop_ _rcsb_entity_instance_feature.ordinal _rcsb_entity_instance_feature.entry_id _rcsb_entity_instance_feature.entity_id _rcsb_entity_instance_feature.asym_id _rcsb_entity_instance_feature.auth_asym_id _rcsb_entity_instance_feature.feature_id _rcsb_entity_instance_feature.type _rcsb_entity_instance_feature.name _rcsb_entity_instance_feature.description _rcsb_entity_instance_feature.reference_scheme _rcsb_entity_instance_feature.provenance_source _rcsb_entity_instance_feature.assignment_version _rcsb_entity_instance_feature.feature_positions_beg_seq_id _rcsb_entity_instance_feature.feature_positions_end_seq_id _rcsb_entity_instance_feature.feature_positions_value """ doLineage = False logger.debug("Starting with %r %r %r", dataContainer.getName(), catName, kwargs) try: if catName != "rcsb_entity_instance_feature": return False # Exit if source categories are missing if not dataContainer.exists("entry"): return False # # Create the new target category if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) cObj = dataContainer.getObj(catName) # rP = kwargs.get("resourceProvider") eObj = dataContainer.getObj("entry") entryId = eObj.getValue("id", 0) # asymIdD = self.__commonU.getInstanceEntityMap(dataContainer) asymAuthIdD = self.__commonU.getAsymAuthIdMap(dataContainer) asymIdRangesD = self.__commonU.getInstancePolymerRanges(dataContainer) pAuthAsymD = self.__commonU.getPolymerIdMap(dataContainer) instTypeD = self.__commonU.getInstanceTypes(dataContainer) # --------------- ii = cObj.getRowCount() # Add CATH assignments cathU = rP.getResource("CathProvider instance") if rP else None if cathU: for asymId, authAsymId in asymAuthIdD.items(): if instTypeD[asymId] not in ["polymer", "branched"]: continue entityId = asymIdD[asymId] dL = cathU.getCathResidueRanges(entryId.lower(), authAsymId) logger.debug("%s asymId %s authAsymId %s dL %r", entryId, asymId, authAsymId, dL) vL = cathU.getCathVersions(entryId.lower(), authAsymId) for (cathId, domId, tId, authSeqBeg, authSeqEnd) in dL: addPropTupL = [] begSeqId = pAuthAsymD[(authAsymId, str(authSeqBeg), None)]["seq_id"] if (authAsymId, str(authSeqBeg), None) in pAuthAsymD else None endSeqId = pAuthAsymD[(authAsymId, str(authSeqEnd), None)]["seq_id"] if (authAsymId, str(authSeqEnd), None) in pAuthAsymD else None if not (begSeqId and endSeqId): # take the full chain begSeqId = asymIdRangesD[asymId]["begSeqId"] if asymId in asymIdRangesD else None endSeqId = asymIdRangesD[asymId]["endSeqId"] if asymId in asymIdRangesD else None if not (begSeqId and endSeqId): logger.info( "%s CATH cathId %r domId %r tId %r asymId %r authAsymId %r authSeqBeg %r authSeqEnd %r", entryId, cathId, domId, tId, asymId, authAsymId, authSeqBeg, authSeqEnd, ) continue cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("CATH", "type", ii) # cObj.setValue(str(cathId), "feature_id", ii) # cObj.setValue(str(domId), "feature_id", ii) # cObj.setValue(cathId, "name", ii) cObj.setValue(cathU.getCathName(cathId), "name", ii) addPropTupL.append(("CATH_NAME", cathU.getCathName(cathId))) addPropTupL.append(("CATH_DOMAIN_ID", str(domId))) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # if doLineage: cObj.setValue(";".join(cathU.getNameLineage(cathId)), "annotation_lineage_name", ii) idLinL = cathU.getIdLineage(cathId) cObj.setValue(";".join(idLinL), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # # cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("CATH", "provenance_source", ii) cObj.setValue(vL[0], "assignment_version", ii) # ii += 1 # ------------ # Add SCOP assignments oldCode = False scopU = rP.getResource("ScopProvider instance") if rP else None if scopU: for asymId, authAsymId in asymAuthIdD.items(): if instTypeD[asymId] not in ["polymer", "branched"]: continue entityId = asymIdD[asymId] dL = scopU.getScopResidueRanges(entryId.lower(), authAsymId) version = scopU.getScopVersion() for (sunId, domId, sccs, tId, authSeqBeg, authSeqEnd) in dL: addPropTupL = [] begSeqId = pAuthAsymD[(authAsymId, str(authSeqBeg), None)]["seq_id"] if (authAsymId, str(authSeqBeg), None) in pAuthAsymD else None endSeqId = pAuthAsymD[(authAsymId, str(authSeqEnd), None)]["seq_id"] if (authAsymId, str(authSeqEnd), None) in pAuthAsymD else None # logger.info("%s (first) begSeqId %r endSeqId %r", entryId, begSeqId, endSeqId) if not (begSeqId and endSeqId): # try another full range # begSeqId = asymIdRangesD[asymId]["begAuthSeqId"] if asymId in asymIdRangesD and "begAuthSeqId" in asymIdRangesD[asymId] else None # endSeqId = asymIdRangesD[asymId]["endAuthSeqId"] if asymId in asymIdRangesD and "endAuthSeqId" in asymIdRangesD[asymId] else None begSeqId = asymIdRangesD[asymId]["begSeqId"] if asymId in asymIdRangesD else None endSeqId = asymIdRangesD[asymId]["endSeqId"] if asymId in asymIdRangesD else None # logger.info("%s (altd) begSeqId %r endSeqId %r", entryId, begSeqId, endSeqId) if not (begSeqId and endSeqId): logger.debug( "%s unqualified SCOP sunId %r domId %r sccs %r asymId %r authAsymId %r authSeqBeg %r authSeqEnd %r", entryId, sunId, domId, sccs, asymId, authAsymId, authSeqBeg, authSeqEnd, ) continue cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("SCOP", "type", ii) # # cObj.setValue(str(sunId), "domain_id", ii) cObj.setValue(domId, "feature_id", ii) cObj.setValue(scopU.getScopName(sunId), "name", ii) # addPropTupL.append(("SCOP_NAME", scopU.getScopName(sunId))) addPropTupL.append(("SCOP_DOMAIN_ID", str(domId))) addPropTupL.append(("SCOP_SUN_ID", str(sunId))) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # if doLineage: tL = [t if t is not None else "" for t in scopU.getNameLineage(sunId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = scopU.getIdLineage(sunId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) if oldCode: if begSeqId is not None and endSeqId is not None: if begSeqId == 0: begSeqId += 1 endSeqId += 1 cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) else: tSeqBeg = asymIdRangesD[asymId]["begAuthSeqId"] if asymId in asymIdRangesD and "begAuthSeqId" in asymIdRangesD[asymId] else None cObj.setValue(tSeqBeg, "feature_positions_beg_seq_id", ii) tSeqEnd = asymIdRangesD[asymId]["endAuthSeqId"] if asymId in asymIdRangesD and "endAuthSeqId" in asymIdRangesD[asymId] else None cObj.setValue(tSeqEnd, "feature_positions_end_seq_id", ii) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("SCOPe", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # ------------ # JDW - Add SCOP2 family assignments scopU = rP.getResource("Scop2Provider instance") if rP else None if scopU: version = scopU.getVersion() for asymId, authAsymId in asymAuthIdD.items(): if instTypeD[asymId] not in ["polymer", "branched"]: continue entityId = asymIdD[asymId] # Family mappings dL = scopU.getFamilyResidueRanges(entryId.upper(), authAsymId) for (domId, familyId, _, authSeqBeg, authSeqEnd) in dL: addPropTupL = [] # map to entity polymer coordinates begSeqId = pAuthAsymD[(authAsymId, str(authSeqBeg), None)]["seq_id"] if (authAsymId, str(authSeqBeg), None) in pAuthAsymD else None endSeqId = pAuthAsymD[(authAsymId, str(authSeqEnd), None)]["seq_id"] if (authAsymId, str(authSeqEnd), None) in pAuthAsymD else None # logger.info("%s (first) begSeqId %r endSeqId %r", entryId, begSeqId, endSeqId) if not (begSeqId and endSeqId): # Use full range begSeqId = asymIdRangesD[asymId]["begSeqId"] if asymId in asymIdRangesD else None endSeqId = asymIdRangesD[asymId]["endSeqId"] if asymId in asymIdRangesD else None cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("SCOP2_FAMILY", "type", ii) # cObj.setValue(domId, "feature_id", ii) cObj.setValue(scopU.getName(familyId), "name", ii) # addPropTupL.append(("SCOP2_FAMILY_NAME", scopU.getName(familyId))) addPropTupL.append(("SCOP2_DOMAIN_ID", str(domId))) addPropTupL.append(("SCOP2_FAMILY_ID", str(familyId))) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # if doLineage: tL = [t if t is not None else "" for t in scopU.getNameLineage(familyId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = scopU.getIdLineage(familyId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("SCOP2", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # JDW - Add SCOP2 superfamily assignments # ------------ for asymId, authAsymId in asymAuthIdD.items(): if instTypeD[asymId] not in ["polymer", "branched"]: continue entityId = asymIdD[asymId] # Family mappings dL = scopU.getSuperFamilyResidueRanges(entryId.lower(), authAsymId) for (domId, superfamilyId, _, authSeqBeg, authSeqEnd) in dL: addPropTupL = [] # map to entity polymer coordinates begSeqId = pAuthAsymD[(authAsymId, str(authSeqBeg), None)]["seq_id"] if (authAsymId, str(authSeqBeg), None) in pAuthAsymD else None endSeqId = pAuthAsymD[(authAsymId, str(authSeqEnd), None)]["seq_id"] if (authAsymId, str(authSeqEnd), None) in pAuthAsymD else None if not (begSeqId and endSeqId): # Use full range begSeqId = asymIdRangesD[asymId]["begSeqId"] if asymId in asymIdRangesD else None endSeqId = asymIdRangesD[asymId]["endSeqId"] if asymId in asymIdRangesD else None cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("SCOP2_SUPERFAMILY", "type", ii) # cObj.setValue(domId, "feature_id", ii) cObj.setValue(scopU.getName(superfamilyId), "name", ii) # addPropTupL.append(("SCOP2_SUPERFAMILY_NAME", scopU.getName(superfamilyId))) addPropTupL.append(("SCOP2_DOMAIN_ID", str(domId))) addPropTupL.append(("SCOP2_SUPERFAMILY_ID", str(superfamilyId))) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # if doLineage: tL = [t if t is not None else "" for t in scopU.getNameLineage(superfamilyId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = scopU.getIdLineage(superfamilyId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("SCOP2", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # JDW - Add SCOP2B superfamily assignments # ------------ for asymId, authAsymId in asymAuthIdD.items(): if instTypeD[asymId] not in ["polymer", "branched"]: continue entityId = asymIdD[asymId] # Family mappings dL = scopU.getSuperFamilyResidueRanges2B(entryId.lower(), authAsymId) for (domId, superfamilyId, _, authSeqBeg, authSeqEnd) in dL: addPropTupL = [] # map to entity polymer coordinates begSeqId = pAuthAsymD[(authAsymId, str(authSeqBeg), None)]["seq_id"] if (authAsymId, str(authSeqBeg), None) in pAuthAsymD else None endSeqId = pAuthAsymD[(authAsymId, str(authSeqEnd), None)]["seq_id"] if (authAsymId, str(authSeqEnd), None) in pAuthAsymD else None if not (begSeqId and endSeqId): # Use full range begSeqId = asymIdRangesD[asymId]["begSeqId"] if asymId in asymIdRangesD else None endSeqId = asymIdRangesD[asymId]["endSeqId"] if asymId in asymIdRangesD else None cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("SCOP2B_SUPERFAMILY", "type", ii) # cObj.setValue(domId, "feature_id", ii) cObj.setValue(scopU.getName(superfamilyId), "name", ii) # addPropTupL.append(("SCOP2_SUPERFAMILY_NAME", scopU.getName(superfamilyId))) addPropTupL.append(("SCOP2_DOMAIN_ID", str(domId))) addPropTupL.append(("SCOP2_SUPERFAMILY_ID", str(superfamilyId))) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # if doLineage: tL = [t if t is not None else "" for t in scopU.getNameLineage(superfamilyId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = scopU.getIdLineage(superfamilyId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("SCOP2B", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # ------------ # ECOD assignments - ecodU = rP.getResource("EcodProvider instance") if rP else None if ecodU: version = ecodU.getVersion() for asymId, authAsymId in asymAuthIdD.items(): if instTypeD[asymId] not in ["polymer", "branched"]: continue entityId = asymIdD[asymId] # Family mappings dL = ecodU.getFamilyResidueRanges(entryId.lower(), authAsymId) for (domId, familyId, _, authSeqBeg, authSeqEnd) in dL: addPropTupL = [] # map to entity polymer coordinates begSeqId = pAuthAsymD[(authAsymId, str(authSeqBeg), None)]["seq_id"] if (authAsymId, str(authSeqBeg), None) in pAuthAsymD else None endSeqId = pAuthAsymD[(authAsymId, str(authSeqEnd), None)]["seq_id"] if (authAsymId, str(authSeqEnd), None) in pAuthAsymD else None if not (begSeqId and endSeqId): # Use full range begSeqId = asymIdRangesD[asymId]["begSeqId"] if asymId in asymIdRangesD else None endSeqId = asymIdRangesD[asymId]["endSeqId"] if asymId in asymIdRangesD else None cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("ECOD", "type", ii) # fName = ecodU.getName(familyId)[3:] cObj.setValue(domId, "feature_id", ii) cObj.setValue(fName, "name", ii) # addPropTupL.append(("ECOD_FAMILY_NAME", fName)) addPropTupL.append(("ECOD_DOMAIN_ID", str(domId))) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # if doLineage: tL = [t if t is not None else "" for t in ecodU.getNameLineage(familyId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = ecodU.getIdLineage(familyId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("ECOD", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # # --- SAbDab sabdabP = rP.getResource("SAbDabTargetFeatureProvider instance") if rP else None if sabdabP: sabdabVersion = sabdabP.getVersion() for asymId, authAsymId in asymAuthIdD.items(): if instTypeD[asymId] not in ["polymer"]: continue entityId = asymIdD[asymId] instId = entryId.lower() + "." + authAsymId for ky, fType in [ ("light_ctype", "SABDAB_ANTIBODY_LIGHT_CHAIN_TYPE"), ("light_subclass", "SABDAB_ANTIBODY_LIGHT_CHAIN_SUBCLASS"), ("heavy_subclass", "SABDAB_ANTIBODY_HEAVY_CHAIN_SUBCLASS"), ]: fName = sabdabP.getAssignment(instId, ky) if not fName or fName in ["?", "unknown"]: continue # Full sequence feature begSeqId = asymIdRangesD[asymId]["begSeqId"] if asymId in asymIdRangesD else None endSeqId = asymIdRangesD[asymId]["endSeqId"] if asymId in asymIdRangesD else None cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue(fType, "type", ii) cObj.setValue("SAbDab_" + instId, "feature_id", ii) cObj.setValue(fName, "name", ii) cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) cObj.setValue("SAbDab", "provenance_source", ii) cObj.setValue(sabdabVersion, "assignment_version", ii) cObj.setValue("PDB entity", "reference_scheme", ii) # ii += 1 # ------------ # Add sheet/strn features instSheetRangeD = self.__ssU.getProtSecStructFeatures(dataContainer, "sheet") sheetSenseD = self.__ssU.getProtSheetSense(dataContainer) for sId, sD in instSheetRangeD.items(): for asymId, rTupL in sD.items(): addPropTupL = [] entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue(rTupL[0][2], "type", ii) # cObj.setValue(str(sId), "feature_id", ii) cObj.setValue("sheet", "name", ii) if sId in sheetSenseD: cObj.setValue(sheetSenseD[sId] + " sense sheet", "description", ii) # addPropTupL.append(("SHEET_SENSE", sheetSenseD[sId])) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # tSeqId = ";".join([str(rTup[0]) for rTup in rTupL]) cObj.setValue(tSeqId, "feature_positions_beg_seq_id", ii) tSeqId = ";".join([str(rTup[1]) for rTup in rTupL]) cObj.setValue(tSeqId, "feature_positions_end_seq_id", ii) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue(rTupL[0][3], "provenance_source", ii) cObj.setValue(rTupL[0][4], "assignment_version", ii) # ii += 1 # ------------------ # Helix features for ssType in ["helix", "bend", "turn"]: myRangeD = self.__ssU.getProtSecStructFeatures(dataContainer, ssType) # helixRangeD = self.__ssU.getProtHelixFeatures(dataContainer) for hId, hL in myRangeD.items(): for (asymId, begSeqId, endSeqId, confType, provCode, provVer) in hL: entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue(confType, "type", ii) # cObj.setValue(str(hId), "feature_id", ii) cObj.setValue(ssType, "name", ii) # cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue(provCode, "provenance_source", ii) cObj.setValue(provVer, "assignment_version", ii) # ii += 1 # # ------------------ # Unassigned SS features unassignedProvD = self.__ssU.getProtUnassignedSecStructProvenance(dataContainer) unassignedRangeD = self.__ssU.getProtUnassignedSecStructFeatures(dataContainer) for asymId, rTupL in unassignedRangeD.items(): if not rTupL: continue entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("UNASSIGNED_SEC_STRUCT", "type", ii) # cObj.setValue(str(1), "feature_id", ii) cObj.setValue("unassigned secondary structure", "name", ii) # cObj.setValue(";".join([str(rTup[0]) for rTup in rTupL]), "feature_positions_beg_seq_id", ii) cObj.setValue(";".join([str(rTup[1]) for rTup in rTupL]), "feature_positions_end_seq_id", ii) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue(unassignedProvD["provenance"], "provenance_source", ii) cObj.setValue(unassignedProvD["version"], "assignment_version", ii) # ii += 1 # cisPeptideD = self.__ssU.getCisPeptides(dataContainer) for cId, cL in cisPeptideD.items(): for (asymId, begSeqId, endSeqId, modelId, omegaAngle) in cL: addPropTupL = [] entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("CIS-PEPTIDE", "type", ii) cObj.setValue(str(cId), "feature_id", ii) cObj.setValue("cis-peptide", "name", ii) # cObj.setValue(begSeqId, "feature_positions_beg_seq_id", ii) cObj.setValue(endSeqId, "feature_positions_end_seq_id", ii) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("PDB", "provenance_source", ii) cObj.setValue("V1.0", "assignment_version", ii) tS = "cis-peptide bond in model %d with omega angle %.2f" % (modelId, omegaAngle) cObj.setValue(tS, "description", ii) # addPropTupL.append(("OMEGA_ANGLE", omegaAngle)) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # # ii += 1 # targetSiteD = self.__commonU.getTargetSiteInfo(dataContainer) ligandSiteD = self.__commonU.getLigandSiteInfo(dataContainer) for tId, tL in targetSiteD.items(): aD = OrderedDict() for tD in tL: aD.setdefault(tD["asymId"], []).append((tD["compId"], tD["seqId"])) for asymId, aL in aD.items(): entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("BINDING_SITE", "type", ii) cObj.setValue(str(tId), "feature_id", ii) cObj.setValue("binding_site", "name", ii) # cObj.setValue(";".join([tup[0] for tup in aL]), "feature_positions_beg_comp_id", ii) cObj.setValue(";".join([tup[1] for tup in aL]), "feature_positions_beg_seq_id", ii) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("PDB", "provenance_source", ii) cObj.setValue("V1.0", "assignment_version", ii) if tId in ligandSiteD: cObj.setValue(ligandSiteD[tId]["description"], "description", ii) if ligandSiteD[tId]["siteLabel"]: cObj.setValue(ligandSiteD[tId]["siteLabel"], "name", ii) # ii += 1 # unObsPolyResRngD = self.__commonU.getUnobservedPolymerResidueInfo(dataContainer) for (modelId, asymId, zeroOccFlag), rTupL in unObsPolyResRngD.items(): entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) # if zeroOccFlag: cObj.setValue("ZERO_OCCUPANCY_RESIDUE_XYZ", "type", ii) tS = "All atom coordinates for this residue are reported with zero-occupancy in model %s" % modelId cObj.setValue(tS, "description", ii) cObj.setValue("residue coordinates with zero occupancy", "name", ii) else: cObj.setValue("UNOBSERVED_RESIDUE_XYZ", "type", ii) tS = "No coordinates for this residue are reported in model %s" % modelId cObj.setValue(tS, "description", ii) cObj.setValue("unmodeled residue", "name", ii) # cObj.setValue(str(1), "feature_id", ii) # cObj.setValue(";".join([str(rTup[0]) for rTup in rTupL]), "feature_positions_beg_seq_id", ii) cObj.setValue(";".join([str(rTup[1]) for rTup in rTupL]), "feature_positions_end_seq_id", ii) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("PDB", "provenance_source", ii) cObj.setValue("V1.0", "assignment_version", ii) # ii += 1 unObsPolyAtomRngD = self.__commonU.getUnobservedPolymerAtomInfo(dataContainer) for (modelId, asymId, zeroOccFlag), rTupL in unObsPolyAtomRngD.items(): entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) # if zeroOccFlag: cObj.setValue("ZERO_OCCUPANCY_ATOM_XYZ", "type", ii) tS = "Some atom coordinates in this residue are reported with zero-occupancy in model %s" % modelId cObj.setValue(tS, "description", ii) cObj.setValue("atom coordinates with zero occupancy", "name", ii) else: cObj.setValue("UNOBSERVED_ATOM_XYZ", "type", ii) tS = "Some atom coordinates in this residue are not reported in model %s" % modelId cObj.setValue(tS, "description", ii) cObj.setValue("partially modeled residue", "name", ii) # cObj.setValue(str(1), "feature_id", ii) # cObj.setValue(";".join([str(rTup[0]) for rTup in rTupL]), "feature_positions_beg_seq_id", ii) cObj.setValue(";".join([str(rTup[1]) for rTup in rTupL]), "feature_positions_end_seq_id", ii) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue("PDB", "provenance_source", ii) cObj.setValue("V1.0", "assignment_version", ii) # ii += 1 npbD = self.__commonU.getBoundNonpolymersByInstance(dataContainer) jj = 1 for asymId, rTupL in npbD.items(): for rTup in rTupL: addPropTupL = [] if rTup.connectType in ["covalent bond"]: fType = "HAS_COVALENT_LINKAGE" fId = "COVALENT_LINKAGE_%d" % jj elif rTup.connectType in ["metal coordination"]: fType = "HAS_METAL_COORDINATION_LINKAGE" fId = "METAL_COORDINATION_LINKAGE_%d" % jj else: continue entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue(rTup.targetCompId, "comp_id", ii) cObj.setValue(fId, "feature_id", ii) cObj.setValue(fType, "type", ii) # # ("targetCompId", "connectType", "partnerCompId", "partnerAsymId", "partnerEntityType", "bondDistance", "bondOrder") cObj.setValue( ";".join(["%s has %s with %s instance %s in model 1" % (rTup.targetCompId, rTup.connectType, rTup.partnerEntityType, rTup.partnerAsymId) for rTup in rTupL]), "feature_value_details", ii, ) # ---- addPropTupL.append(("PARTNER_ASYM_ID", rTup.partnerAsymId)) if rTup.partnerCompId: addPropTupL.append(("PARTNER_COMP_ID", rTup.partnerCompId)) if rTup.bondDistance: addPropTupL.append(("PARTNER_BOND_DISTANCE", rTup.bondDistance)) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # ---- cObj.setValue(";".join([rTup.partnerCompId if rTup.partnerCompId else "?" for rTup in rTupL]), "feature_value_comp_id", ii) cObj.setValue(";".join([rTup.bondDistance if rTup.bondDistance else "?" for rTup in rTupL]), "feature_value_reported", ii) cObj.setValue(";".join(["?" for rTup in rTupL]), "feature_value_reference", ii) cObj.setValue(";".join(["?" for rTup in rTupL]), "feature_value_uncertainty_estimate", ii) cObj.setValue(";".join(["?" for rTup in rTupL]), "feature_value_uncertainty_estimate_type", ii) # --- cObj.setValue("PDB", "provenance_source", ii) cObj.setValue("V1.0", "assignment_version", ii) # ii += 1 jj += 1 # Glycosylation sites jj = 1 for asymId, rTupL in npbD.items(): if instTypeD[asymId] not in ["polymer"]: continue for rTup in rTupL: addPropTupL = [] if (rTup.connectType in ["covalent bond"]) and (rTup.role is not None) and (rTup.role not in [".", "?"]): fType = rTup.role.upper() + "_SITE" fId = "GLYCOSYLATION_SITE_%d" % jj else: continue entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue(rTup.targetCompId, "comp_id", ii) cObj.setValue(fId, "feature_id", ii) cObj.setValue(fType, "type", ii) # # ("targetCompId", "connectType", "partnerCompId", "partnerAsymId", "partnerEntityType", "bondDistance", "bondOrder") cObj.setValue( ";".join(["%s has %s site on %s instance %s in model 1" % (rTup.targetCompId, rTup.role, rTup.partnerEntityType, rTup.partnerAsymId) for rTup in rTupL]), "feature_value_details", ii, ) # ---- addPropTupL.append(("PARTNER_ASYM_ID", rTup.partnerAsymId)) if rTup.partnerCompId: addPropTupL.append(("PARTNER_COMP_ID", rTup.partnerCompId)) if rTup.bondDistance: addPropTupL.append(("PARTNER_BOND_DISTANCE", rTup.bondDistance)) cObj.setValue(";".join([str(tup[0]) for tup in addPropTupL]), "additional_properties_name", ii) cObj.setValue(";".join([str(tup[1]) for tup in addPropTupL]), "additional_properties_values", ii) # ---- cObj.setValue(";".join([rTup.partnerCompId if rTup.partnerCompId else "?" for rTup in rTupL]), "feature_value_comp_id", ii) cObj.setValue(";".join([rTup.bondDistance if rTup.bondDistance else "?" for rTup in rTupL]), "feature_value_reported", ii) cObj.setValue(";".join(["?" for rTup in rTupL]), "feature_value_reference", ii) cObj.setValue(";".join(["?" for rTup in rTupL]), "feature_value_uncertainty_estimate", ii) cObj.setValue(";".join(["?" for rTup in rTupL]), "feature_value_uncertainty_estimate_type", ii) # --- cObj.setValue("PDB", "provenance_source", ii) cObj.setValue("V1.0", "assignment_version", ii) # ii += 1 jj += 1 return True except Exception as e: logger.exception("%s %s failing with %s", dataContainer.getName(), catName, str(e)) return False def addProtSecStructInfo(self, dataContainer, catName, **kwargs): """DEPRECATED METHOD - UNLINKED in Dictionary Add category rcsb_prot_sec_struct_info. """ try: # JDWJDW logger.info("Starting with %r %r %r", dataContainer.getName(), catName, kwargs) # Exit if source categories are missing if not dataContainer.exists("entry") and not (dataContainer.exists("struct_conf") or dataContainer.exists("struct_sheet_range")): return False # # Create the new target category rcsb_prot_sec_struct_info if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) sD = self.__commonU.getProtSecStructFeaturesAll(dataContainer) # catName = rcsb_prot_sec_struct_info cObj = dataContainer.getObj(catName) # xObj = dataContainer.getObj("entry") entryId = xObj.getValue("id", 0) # for ii, asymId in enumerate(sD["helixCountD"]): cObj.setValue(entryId, "entry_id", ii) cObj.setValue(asymId, "label_asym_id", ii) # cObj.setValue(sD["helixCountD"][asymId], "helix_count", ii) cObj.setValue(sD["sheetStrandCountD"][asymId], "beta_strand_count", ii) cObj.setValue(sD["unassignedCountD"][asymId], "unassigned_count", ii) # cObj.setValue(",".join([str(t) for t in sD["helixLengthD"][asymId]]), "helix_length", ii) cObj.setValue(",".join([str(t) for t in sD["sheetStrandLengthD"][asymId]]), "beta_strand_length", ii) cObj.setValue(",".join([str(t) for t in sD["unassignedLengthD"][asymId]]), "unassigned_length", ii) cObj.setValue("%.2f" % (100.0 * sD["helixFracD"][asymId]), "helix_coverage_percent", ii) cObj.setValue("%.2f" % (100.0 * sD["sheetStrandFracD"][asymId]), "beta_strand_coverage_percent", ii) cObj.setValue("%.2f" % (100.0 * sD["unassignedFracD"][asymId]), "unassigned_coverage_percent", ii) cObj.setValue(",".join(sD["sheetSenseD"][asymId]), "beta_sheet_sense", ii) cObj.setValue(",".join([str(t) for t in sD["sheetFullStrandCountD"][asymId]]), "beta_sheet_strand_count", ii) cObj.setValue(sD["featureMonomerSequenceD"][asymId], "feature_monomer_sequence", ii) cObj.setValue(sD["featureSequenceD"][asymId], "feature_sequence", ii) return True except Exception as e: logger.exception("For %s %r failing with %s", dataContainer.getName(), catName, str(e)) return False def addConnectionDetails(self, dataContainer, catName, **kwargs): """Build rcsb_struct_conn category - Args: dataContainer (object): mmcif.api.mmcif.api.DataContainer object instance catName (str): category name Returns: bool: True for success or False otherwise Example: loop_ _rcsb_struct_conn.ordinal_id _rcsb_struct_conn.id _rcsb_struct_conn.conn_type _rcsb_struct_conn.connect_target_label_comp_id _rcsb_struct_conn.connect_target_label_asym_id _rcsb_struct_conn.connect_target_label_seq_id _rcsb_struct_conn.connect_target_label_atom_id _rcsb_struct_conn.connect_target_label_alt_id _rcsb_struct_conn.connect_target_auth_asym_id _rcsb_struct_conn.connect_target_auth_seq_id _rcsb_struct_conn.connect_target_symmetry _rcsb_struct_conn.connect_partner_label_comp_id _rcsb_struct_conn.connect_partner_label_asym_id _rcsb_struct_conn.connect_partner_label_seq_id _rcsb_struct_conn.connect_partner_label_atom_id _rcsb_struct_conn.connect_partner_label_alt_id _rcsb_struct_conn.connect_partner_symmetry _rcsb_struct_conn.details # - - - - data truncated for brevity - - - - """ try: logger.debug("Starting with %r %r %r", dataContainer.getName(), catName, kwargs) # Exit if source categories are missing if not dataContainer.exists("entry") and not dataContainer.exists("struct_conn"): return False # # Create the new target category rcsb_struct_conn if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) cDL = self.__commonU.getInstanceConnections(dataContainer) asymIdD = self.__commonU.getInstanceEntityMap(dataContainer) asymAuthIdD = self.__commonU.getAsymAuthIdMap(dataContainer) # # catName = rcsb_struct_conn cObj = dataContainer.getObj(catName) # xObj = dataContainer.getObj("entry") entryId = xObj.getValue("id", 0) # for ii, cD in enumerate(cDL): asymId = cD["connect_target_label_asym_id"] entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] if asymId in asymAuthIdD else None cObj.setValue(ii + 1, "ordinal_id", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(entityId, "entity_id", ii) if authAsymId: cObj.setValue(authAsymId, "auth_asym_id", ii) else: logger.error("Missing mapping for %s asymId %s to authAsymId ", entryId, asymId) for ky, val in cD.items(): cObj.setValue(val, ky, ii) # return True except Exception as e: logger.exception("For %s %r failing with %s", dataContainer.getName(), catName, str(e)) return False def __stripWhiteSpace(self, val): """Remove all white space from the input value.""" if val is None: return val return self.__wsPattern.sub("", val) def buildInstanceValidationFeatures(self, dataContainer, catName, **kwargs): """Build category rcsb_entity_instance_validation_feature ... Example: loop_ _rcsb_entity_instance_validation_feature.ordinal _rcsb_entity_instance_validation_feature.entry_id _rcsb_entity_instance_validation_feature.entity_id _rcsb_entity_instance_validation_feature.asym_id _rcsb_entity_instance_validation_feature.auth_asym_id _rcsb_entity_instance_validation_feature.feature_id _rcsb_entity_instance_validation_feature.type _rcsb_entity_instance_validation_feature.name _rcsb_entity_instance_validation_feature.description _rcsb_entity_instance_validation_feature.annotation_lineage_id _rcsb_entity_instance_validation_feature.annotation_lineage_name _rcsb_entity_instance_validation_feature.annotation_lineage_depth _rcsb_entity_instance_validation_feature.reference_scheme _rcsb_entity_instance_validation_feature.provenance_source _rcsb_entity_instance_validation_feature.assignment_version _rcsb_entity_instance_validation_feature.feature_positions_beg_seq_id _rcsb_entity_instance_validation_feature.feature_positions_end_seq_id _rcsb_entity_instance_validation_feature.feature_positions_beg_comp_id # _rcsb_entity_instance_validation_feature.feature_value_comp_id _rcsb_entity_instance_validation_feature.feature_value_reported _rcsb_entity_instance_validation_feature.feature_value_reference _rcsb_entity_instance_validation_feature.feature_value_uncertainty_estimate _rcsb_entity_instance_validation_feature.feature_value_uncertainty_estimate_type _rcsb_entity_instance_validation_feature.feature_value_details """ logger.debug("Starting with %r %r %r", dataContainer.getName(), catName, kwargs) typeMapD = { "ROTAMER_OUTLIER": "Molprobity rotamer outlier", "RAMACHANDRAN_OUTLIER": "Molprobity Ramachandran outlier", "RSRZ_OUTLIER": "Real space R-value Z score > 2", "RSCC_OUTLIER": "Real space density correlation value < 0.65", "MOGUL_BOND_OUTLIER": "Mogul bond distance outlier", "MOGUL_ANGLE_OUTLIER": "Mogul bond angle outlier", "BOND_OUTLIER": "Molprobity bond distance outlier", "ANGLE_OUTLIER": "Molprobity bond angle outlier", } try: if catName != "rcsb_entity_instance_validation_feature": return False # Exit if source categories are missing if not dataContainer.exists("entry"): return False # eObj = dataContainer.getObj("entry") entryId = eObj.getValue("id", 0) # # Create the new target category if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) cObj = dataContainer.getObj(catName) ii = cObj.getRowCount() # asymIdD = self.__commonU.getInstanceEntityMap(dataContainer) asymAuthIdD = self.__commonU.getAsymAuthIdMap(dataContainer) # instanceModelOutlierD = self.__commonU.getInstanceModelOutlierInfo(dataContainer) # # ("OutlierValue", "compId, seqId, outlierType, description, reported, reference, uncertaintyValue, uncertaintyType") # logger.debug("Length instanceModelOutlierD %d", len(instanceModelOutlierD)) # for (modelId, asymId, altId, hasSeq), pTupL in instanceModelOutlierD.items(): fTypeL = sorted(set([pTup.outlierType for pTup in pTupL])) jj = 1 for fType in fTypeL: if (asymId not in asymIdD) or (asymId not in asymAuthIdD): continue entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] # cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) # cObj.setValue(fType, "type", ii) tN = typeMapD[fType] if fType in typeMapD else fType cObj.setValue(tN, "name", ii) # tFn = "%s_%d" % (fType, jj) cObj.setValue(tFn, "feature_id", ii) # if hasSeq: descriptionS = tN + " in instance %s (altId %s) model %s" % (asymId, altId, modelId) if altId else tN + " in instance %s model %s" % (asymId, modelId) cObj.setValue(";".join([pTup.compId for pTup in pTupL if pTup.outlierType == fType]), "feature_positions_beg_comp_id", ii) cObj.setValue(";".join([str(pTup.seqId) for pTup in pTupL if pTup.outlierType == fType]), "feature_positions_beg_seq_id", ii) else: cObj.setValue(pTupL[0].compId, "comp_id", ii) descriptionS = ( tN + " in %s instance %s (altId %s) model %s" % (pTupL[0].compId, asymId, altId, modelId) if altId else tN + " in %s instance %s model %s" % (pTupL[0].compId, asymId, modelId) ) # cObj.setValue(";".join([pTup.compId if pTup.compId else "?" for pTup in pTupL if pTup.outlierType == fType]), "feature_value_comp_id", ii) cObj.setValue(";".join([pTup.description if pTup.description else "?" for pTup in pTupL if pTup.outlierType == fType]), "feature_value_details", ii) cObj.setValue(";".join([pTup.reported if pTup.reported else "?" for pTup in pTupL if pTup.outlierType == fType]), "feature_value_reported", ii) cObj.setValue(";".join([pTup.reference if pTup.reference else "?" for pTup in pTupL if pTup.outlierType == fType]), "feature_value_reference", ii) cObj.setValue( ";".join([pTup.uncertaintyValue if pTup.uncertaintyValue else "?" for pTup in pTupL if pTup.outlierType == fType]), "feature_value_uncertainty_estimate", ii, ) cObj.setValue( ";".join([pTup.uncertaintyType if pTup.uncertaintyType else "?" for pTup in pTupL if pTup.outlierType == fType]), "feature_value_uncertainty_estimate_type", ii, ) # cObj.setValue("PDB entity", "reference_scheme", ii) cObj.setValue(descriptionS, "description", ii) cObj.setValue("PDB", "provenance_source", ii) cObj.setValue("V1.0", "assignment_version", ii) # jj += 1 ii += 1 # return True except Exception as e: logger.exception("For %s %r failing with %s", dataContainer.getName(), catName, str(e)) return False # --- JDW def buildInstanceValidationFeatureSummaryPrev(self, dataContainer, catName, **kwargs): """Build category rcsb_entity_instance_validation_feature_summary Example: loop_ _rcsb_entity_instance_validation_feature_summary.ordinal _rcsb_entity_instance_validation_feature_summary.entry_id _rcsb_entity_instance_validation_feature_summary.entity_id _rcsb_entity_instance_validation_feature_summary.asym_id _rcsb_entity_instance_validation_feature_summary.auth_asym_id #validation_ _rcsb_entity_instance_validation_feature_summary.type _rcsb_entity_instance_validation_feature_summary.count _rcsb_entity_instance_validation_feature_summary.coverage # ... """ logger.debug("Starting with %r %r %r", dataContainer.getName(), catName, kwargs) try: if catName != "rcsb_entity_instance_validation_feature_summary": return False if not dataContainer.exists("rcsb_entity_instance_validation_feature") and not dataContainer.exists("entry"): return False if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) # eObj = dataContainer.getObj("entry") entryId = eObj.getValue("id", 0) # sObj = dataContainer.getObj(catName) fObj = dataContainer.getObj("rcsb_entity_instance_validation_feature") # instIdMapD = self.__commonU.getInstanceIdMap(dataContainer) instEntityD = self.__commonU.getInstanceEntityMap(dataContainer) entityPolymerLengthD = self.__commonU.getPolymerEntityLengthsEnumerated(dataContainer) asymAuthD = self.__commonU.getAsymAuthIdMap(dataContainer) fCountD = OrderedDict() fMonomerCountD = OrderedDict() fInstanceCountD = OrderedDict() for ii in range(fObj.getRowCount()): asymId = fObj.getValue("asym_id", ii) # ---- initialize counts # fCountD = self.__initializeInstanceValidationFeatureType(dataContainer, asymId, fCountD, countType="set") # fMonomerCountD = self.__initializeInstanceValidationFeatureType(dataContainer, asymId, fMonomerCountD, countType="list") # fInstanceCountD = self.__initializeInstanceValidationFeatureType(dataContainer, asymId, fInstanceCountD, countType="list") # ---- fType = fObj.getValue("type", ii) fId = fObj.getValue("feature_id", ii) fCountD.setdefault(asymId, {}).setdefault(fType, set()).add(fId) # tbegS = fObj.getValueOrDefault("feature_positions_beg_seq_id", ii, defaultValue=None) tendS = fObj.getValueOrDefault("feature_positions_end_seq_id", ii, defaultValue=None) if fObj.hasAttribute("feature_positions_beg_seq_id") and tbegS is not None and fObj.hasAttribute("feature_positions_end_seq_id") and tendS is not None: begSeqIdL = str(fObj.getValue("feature_positions_beg_seq_id", ii)).split(";") endSeqIdL = str(fObj.getValue("feature_positions_end_seq_id", ii)).split(";") monCount = 0 for begSeqId, endSeqId in zip(begSeqIdL, endSeqIdL): try: monCount += abs(int(endSeqId) - int(begSeqId) + 1) except Exception: logger.warning( "In %s fType %r fId %r bad sequence range begSeqIdL %r endSeqIdL %r tbegS %r tendS %r", dataContainer.getName(), fType, fId, begSeqIdL, endSeqIdL, tbegS, tendS, ) fMonomerCountD.setdefault(asymId, {}).setdefault(fType, []).append(monCount) elif fObj.hasAttribute("feature_positions_beg_seq_id") and tbegS: seqIdL = str(fObj.getValue("feature_positions_beg_seq_id", ii)).split(";") fMonomerCountD.setdefault(asymId, {}).setdefault(fType, []).append(len(seqIdL)) tS = fObj.getValueOrDefault("feature_value_details", ii, defaultValue=None) if fObj.hasAttribute("feature_value_details") and tS is not None: dL = str(fObj.getValue("feature_value_details", ii)).split(";") fInstanceCountD.setdefault(asymId, {}).setdefault(fType, []).append(len(dL)) # # logger.debug("%s fCountD %r", entryId, fCountD) # ii = 0 for asymId, fTypeD in fCountD.items(): entityId = instEntityD[asymId] authAsymId = asymAuthD[asymId] for fType, fS in fTypeD.items(): # sObj.setValue(ii + 1, "ordinal", ii) sObj.setValue(entryId, "entry_id", ii) sObj.setValue(entityId, "entity_id", ii) sObj.setValue(asymId, "asym_id", ii) if asymId in instIdMapD and "comp_id" in instIdMapD[asymId] and instIdMapD[asymId]["comp_id"]: sObj.setValue(instIdMapD[asymId]["comp_id"], "comp_id", ii) sObj.setValue(authAsymId, "auth_asym_id", ii) sObj.setValue(fType, "type", ii) fracC = 0.0 # if asymId in fMonomerCountD and fType in fMonomerCountD[asymId] and fMonomerCountD[asymId][fType]: fCount = sum(fMonomerCountD[asymId][fType]) if asymId in fMonomerCountD and fType in fMonomerCountD[asymId] and entityId in entityPolymerLengthD: fracC = float(sum(fMonomerCountD[asymId][fType])) / float(entityPolymerLengthD[entityId]) elif asymId in fInstanceCountD and fType in fInstanceCountD[asymId] and fInstanceCountD[asymId][fType]: fCount = sum(fInstanceCountD[asymId][fType]) else: fCount = len(fS) # sObj.setValue(fCount, "count", ii) sObj.setValue(round(fracC, 5), "coverage", ii) # ii += 1 except Exception as e: logger.exception("Failing with %s", str(e)) return True def __initializeInstanceValidationFeatureType(self, dataContainer, asymId, fCountD, countType="set"): instTypeD = self.__commonU.getInstanceTypes(dataContainer) eType = instTypeD[asymId] eTupL = [] # rcsb_entity_instance_validation_feature_summary.type if eType == "polymer": eTupL = self.__dApi.getEnumListWithDetail("rcsb_entity_instance_validation_feature_summary", "type") elif eType in ["non-polymer", "water"]: eTupL = self.__dApi.getEnumListWithDetail("rcsb_entity_instance_validation_feature_summary", "type") elif eType == "branched": eTupL = self.__dApi.getEnumListWithDetail("rcsb_entity_instance_validation_feature_summary", "type") else: logger.error("%r asymId %r eType %r", dataContainer.getName(), asymId, eType) # fTypeL = sorted([tup[0] for tup in eTupL]) # for fType in fTypeL: if countType == "set": fCountD.setdefault(asymId, {}).setdefault(fType, set()) else: fCountD.setdefault(asymId, {}).setdefault(fType, []) # return fCountD # --- JDW def __getInstanceFeatureTypes(self, eType): # vTupL = self.__dApi.getEnumListWithDetail("rcsb_entity_instance_validation_feature_summary", "type") if eType == "polymer": eTupL = self.__dApi.getEnumListWithDetail("rcsb_polymer_instance_feature_summary", "type") elif eType in ["non-polymer", "water"]: eTupL = self.__dApi.getEnumListWithDetail("rcsb_nonpolymer_instance_feature_summary", "type") elif eType == "branched": eTupL = self.__dApi.getEnumListWithDetail("rcsb_branched_instance_feature_summary", "type") else: logger.error("Unexpected eType %r -- no features types provided", eType) eTupL = [] # Distinct elements in the instance specific categories. (remove validation types) vTypeL = sorted([tup[0] for tup in vTupL]) iTypeL = sorted([tup[0] for tup in eTupL]) fTypeL = sorted(set(iTypeL) - set(vTypeL)) return fTypeL def __getInstanceValidationFeatureTypes(self, eType): # vTupL = self.__dApi.getEnumListWithDetail("rcsb_entity_instance_validation_feature_summary", "type") if eType == "polymer": eTupL = self.__dApi.getEnumListWithDetail("rcsb_polymer_instance_feature_summary", "type") elif eType in ["non-polymer", "water"]: eTupL = self.__dApi.getEnumListWithDetail("rcsb_nonpolymer_instance_feature_summary", "type") elif eType == "branched": eTupL = self.__dApi.getEnumListWithDetail("rcsb_branched_instance_feature_summary", "type") else: logger.error("Unexpected eType %r -- no features types provided", eType) eTupL = [] # Common elements in the instance specific categories. vTypeL = sorted([tup[0] for tup in vTupL]) iTypeL = sorted([tup[0] for tup in eTupL]) fTypeL = sorted(set(vTypeL).intersection(iTypeL)) return fTypeL # --- JDW def buildEntityInstanceFeatureSummary(self, dataContainer, catName, **kwargs): """Build category rcsb_entity_instance_feature_summary (UPDATED) Example: loop_ _rcsb_entity_instance_feature_summary.ordinal _rcsb_entity_instance_feature_summary.entry_id _rcsb_entity_instance_feature_summary.entity_id _rcsb_entity_instance_feature_summary.asym_id _rcsb_entity_instance_feature_summary.auth_asym_id # _rcsb_entity_instance_feature_summary.type _rcsb_entity_instance_feature_summary.count _rcsb_entity_instance_feature_summary.coverage # ... """ logger.debug("Starting with %r %r %r", dataContainer.getName(), catName, kwargs) try: if catName != "rcsb_entity_instance_feature_summary": return False if not dataContainer.exists("rcsb_entity_instance_feature") and not dataContainer.exists("entry"): return False if not dataContainer.exists(catName): logger.debug("building %s with %r", catName, self.__dApi.getAttributeNameList(catName)) dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) # eObj = dataContainer.getObj("entry") entryId = eObj.getValue("id", 0) # sObj = dataContainer.getObj(catName) fObj = dataContainer.getObj("rcsb_entity_instance_feature") # instEntityD = self.__commonU.getInstanceEntityMap(dataContainer) entityPolymerLengthD = self.__commonU.getPolymerEntityLengthsEnumerated(dataContainer) # typeList = self.__dApi.getEnumList("rcsb_entity_instance_feature_summary", "type", sortFlag=True) asymAuthD = self.__commonU.getAsymAuthIdMap(dataContainer) instIdMapD = self.__commonU.getInstanceIdMap(dataContainer) instTypeD = self.__commonU.getInstanceTypes(dataContainer) # fCountD = OrderedDict() fValuesD = OrderedDict() fMonomerCountD = OrderedDict() for ii in range(fObj.getRowCount()): asymId = fObj.getValue("asym_id", ii) # ---- initialize counts # fCountD = self.__initializeInstanceFeatureType(dataContainer, asymId, fCountD, countType="set") # fMonomerCountD = self.__initializeInstanceFeatureType(dataContainer, asymId, fMonomerCountD, countType="list") # ---- fType = fObj.getValue("type", ii) fId = fObj.getValue("feature_id", ii) fCountD.setdefault(asymId, {}).setdefault(fType, set()).add(fId) # tbegS = fObj.getValueOrDefault("feature_positions_beg_seq_id", ii, defaultValue=None) tendS = fObj.getValueOrDefault("feature_positions_end_seq_id", ii, defaultValue=None) if fObj.hasAttribute("feature_positions_beg_seq_id") and tbegS is not None and fObj.hasAttribute("feature_positions_end_seq_id") and tendS is not None: begSeqIdL = str(fObj.getValue("feature_positions_beg_seq_id", ii)).split(";") endSeqIdL = str(fObj.getValue("feature_positions_end_seq_id", ii)).split(";") monCount = 0 for begSeqId, endSeqId in zip(begSeqIdL, endSeqIdL): try: monCount += abs(int(endSeqId) - int(begSeqId) + 1) except Exception: logger.warning( "%s fType %r fId %r bad sequence begSeqIdL %r endSeqIdL %r tbegS %r tendS %r", dataContainer.getName(), fType, fId, begSeqIdL, endSeqIdL, tbegS, tendS, ) fMonomerCountD.setdefault(asymId, {}).setdefault(fType, []).append(monCount) elif fObj.hasAttribute("feature_positions_beg_seq_id") and tbegS: seqIdL = str(fObj.getValue("feature_positions_beg_seq_id", ii)).split(";") fMonomerCountD.setdefault(asymId, {}).setdefault(fType, []).append(len(seqIdL)) # JDW elif fObj.hasAttribute("feature_value_reported"): tValue = fObj.getValueOrDefault("feature_value_reported", ii, defaultValue=None) if tValue: try: tvL = [float(t) for t in tValue.split(";")] fValuesD.setdefault(asymId, {}).setdefault(fType, []).extend(tvL) except Exception: pass # logger.debug("%s fCountD %r", entryId, fCountD) # ii = 0 for asymId, entityId in instEntityD.items(): eType = instTypeD[asymId] authAsymId = asymAuthD[asymId] fTypeL = self.__getInstanceFeatureTypes(eType) # logger.info("Feature type list %r", fTypeL) # All entity type specific features for fType in fTypeL: sObj.setValue(ii + 1, "ordinal", ii) sObj.setValue(entryId, "entry_id", ii) sObj.setValue(entityId, "entity_id", ii) sObj.setValue(asymId, "asym_id", ii) sObj.setValue(authAsymId, "auth_asym_id", ii) # add comp if asymId in instIdMapD and "comp_id" in instIdMapD[asymId] and instIdMapD[asymId]["comp_id"]: sObj.setValue(instIdMapD[asymId]["comp_id"], "comp_id", ii) sObj.setValue(fType, "type", ii) fracC = 0.0 minL = maxL = 0 if asymId in fMonomerCountD and fType in fMonomerCountD[asymId]: if fType.startswith("UNOBSERVED"): fCount = sum(fMonomerCountD[asymId][fType]) else: fCount = len(fCountD[asymId][fType]) if entityId in entityPolymerLengthD: fracC = float(sum(fMonomerCountD[asymId][fType])) / float(entityPolymerLengthD[entityId]) if ( fType in ["CATH", "SCOP", "HELIX_P", "SHEET", "UNASSIGNED_SEC_STRUCT", "UNOBSERVED_RESIDUE_XYZ", "ZERO_OCCUPANCY_RESIDUE_XYZ"] + DictMethodSecStructUtils.dsspTypeNames ): minL = min(fMonomerCountD[asymId][fType]) maxL = max(fMonomerCountD[asymId][fType]) elif asymId in fCountD and fType in fCountD[asymId] and fCountD[asymId][fType]: fCount = len(fCountD[asymId][fType]) else: fCount = 0 # minV = maxV = 0 if asymId in fValuesD and fType in fValuesD[asymId]: if fType in [ "HAS_COVALENT_LINKAGE", "HAS_METAL_COORDINATION_LINKAGE", "N-GLYCOSYLATION_SITE", "O-GLYCOSYLATION_SITE", "S-GLYCOSYLATION_SITE", "C-MANNOSYLATION_SITE", ]: try: minV = min(fValuesD[asymId][fType]) maxV = max(fValuesD[asymId][fType]) except Exception: pass sObj.setValue(fCount, "count", ii) sObj.setValue(round(fracC, 5), "coverage", ii) if minL is not None: sObj.setValue(minL, "minimum_length", ii) sObj.setValue(maxL, "maximum_length", ii) if minV is not None: sObj.setValue(minV, "minimum_value", ii) sObj.setValue(maxV, "maximum_value", ii) # ii += 1 except Exception as e: logger.exception("Failing for %s with %s", dataContainer.getName(), str(e)) return True def buildInstanceValidationFeatureSummary(self, dataContainer, catName, **kwargs): """Build category rcsb_entity_instance_validation_feature_summary Example: loop_ _rcsb_entity_instance_validation_feature_summary.ordinal _rcsb_entity_instance_validation_feature_summary.entry_id _rcsb_entity_instance_validation_feature_summary.entity_id _rcsb_entity_instance_validation_feature_summary.asym_id _rcsb_entity_instance_validation_feature_summary.auth_asym_id _rcsb_entity_instance_validation_feature_summary.type _rcsb_entity_instance_validation_feature_summary.count _rcsb_entity_instance_validation_feature_summary.coverage # ... """ logger.debug("Starting with %r %r %r", dataContainer.getName(), catName, kwargs) try: if catName != "rcsb_entity_instance_validation_feature_summary": return False if not dataContainer.exists("rcsb_entity_instance_validation_feature") and not dataContainer.exists("entry"): return False if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) # eObj = dataContainer.getObj("entry") entryId = eObj.getValue("id", 0) # sObj = dataContainer.getObj(catName) fObj = dataContainer.getObj("rcsb_entity_instance_validation_feature") # instIdMapD = self.__commonU.getInstanceIdMap(dataContainer) instEntityD = self.__commonU.getInstanceEntityMap(dataContainer) entityPolymerLengthD = self.__commonU.getPolymerEntityLengthsEnumerated(dataContainer) asymAuthD = self.__commonU.getAsymAuthIdMap(dataContainer) instTypeD = self.__commonU.getInstanceTypes(dataContainer) fCountD = OrderedDict() fMonomerCountD = OrderedDict() fInstanceCountD = OrderedDict() for ii in range(fObj.getRowCount()): asymId = fObj.getValue("asym_id", ii) fType = fObj.getValue("type", ii) fId = fObj.getValue("feature_id", ii) fCountD.setdefault(asymId, {}).setdefault(fType, set()).add(fId) # tbegS = fObj.getValueOrDefault("feature_positions_beg_seq_id", ii, defaultValue=None) tendS = fObj.getValueOrDefault("feature_positions_end_seq_id", ii, defaultValue=None) if fObj.hasAttribute("feature_positions_beg_seq_id") and tbegS is not None and fObj.hasAttribute("feature_positions_end_seq_id") and tendS is not None: begSeqIdL = str(fObj.getValue("feature_positions_beg_seq_id", ii)).split(";") endSeqIdL = str(fObj.getValue("feature_positions_end_seq_id", ii)).split(";") monCount = 0 for begSeqId, endSeqId in zip(begSeqIdL, endSeqIdL): try: monCount += abs(int(endSeqId) - int(begSeqId) + 1) except Exception: logger.warning( "In %s fType %r fId %r bad sequence range begSeqIdL %r endSeqIdL %r tbegS %r tendS %r", dataContainer.getName(), fType, fId, begSeqIdL, endSeqIdL, tbegS, tendS, ) fMonomerCountD.setdefault(asymId, {}).setdefault(fType, []).append(monCount) elif fObj.hasAttribute("feature_positions_beg_seq_id") and tbegS: seqIdL = str(fObj.getValue("feature_positions_beg_seq_id", ii)).split(";") fMonomerCountD.setdefault(asymId, {}).setdefault(fType, []).append(len(seqIdL)) tS = fObj.getValueOrDefault("feature_value_details", ii, defaultValue=None) if fObj.hasAttribute("feature_value_details") and tS is not None: dL = str(fObj.getValue("feature_value_details", ii)).split(";") fInstanceCountD.setdefault(asymId, {}).setdefault(fType, []).append(len(dL)) # ii = 0 # Summarize all instances - for asymId, entityId in instEntityD.items(): eType = instTypeD[asymId] authAsymId = asymAuthD[asymId] fTypeL = self.__getInstanceValidationFeatureTypes(eType) # All entity type specific features for fType in fTypeL: # sObj.setValue(ii + 1, "ordinal", ii) sObj.setValue(entryId, "entry_id", ii) sObj.setValue(entityId, "entity_id", ii) sObj.setValue(asymId, "asym_id", ii) if asymId in instIdMapD and "comp_id" in instIdMapD[asymId] and instIdMapD[asymId]["comp_id"]: sObj.setValue(instIdMapD[asymId]["comp_id"], "comp_id", ii) sObj.setValue(authAsymId, "auth_asym_id", ii) sObj.setValue(fType, "type", ii) # # Sum features with different granularity # fracC = 0.0 if asymId in fMonomerCountD and fType in fMonomerCountD[asymId] and fMonomerCountD[asymId][fType]: fCount = sum(fMonomerCountD[asymId][fType]) if asymId in fMonomerCountD and fType in fMonomerCountD[asymId] and entityId in entityPolymerLengthD: fracC = float(sum(fMonomerCountD[asymId][fType])) / float(entityPolymerLengthD[entityId]) elif asymId in fInstanceCountD and fType in fInstanceCountD[asymId] and fInstanceCountD[asymId][fType]: fCount = sum(fInstanceCountD[asymId][fType]) elif asymId in fCountD and fType in fCountD[asymId] and fCountD[asymId][fType]: fCount = len(fCountD[asymId][fType]) else: # default zero value fCount = 0 # sObj.setValue(fCount, "count", ii) sObj.setValue(round(fracC, 5), "coverage", ii) # ii += 1 except Exception as e: logger.exception("Failing with %s", str(e)) return True # def buildEntityInstanceAnnotations(self, dataContainer, catName, **kwargs): """Build category rcsb_entity_instance_annotation ... Example: loop_ _rcsb_entity_instance_annotation.ordinal _rcsb_entity_instance_annotation.entry_id _rcsb_entity_instance_annotation.entity_id _rcsb_entity_instance_annotation.asym_id _rcsb_entity_instance_annotation.auth_asym_id _rcsb_entity_instance_annotation.annotation_id _rcsb_entity_instance_annotation.type _rcsb_entity_instance_annotation.name _rcsb_entity_instance_annotation.description _rcsb_entity_instance_annotation.annotation_lineage_id _rcsb_entity_instance_annotation.annotation_lineage_name _rcsb_entity_instance_annotation.annotation_lineage_depth _rcsb_entity_instance_annotation.reference_scheme _rcsb_entity_instance_annotation.provenance_source _rcsb_entity_instance_annotation.assignment_version """ logger.debug("Starting with %r %r %r", dataContainer.getName(), catName, kwargs) try: if catName != "rcsb_entity_instance_annotation": return False # Exit if source categories are missing if not dataContainer.exists("entry"): return False # # Create the new target category if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) cObj = dataContainer.getObj(catName) # rP = kwargs.get("resourceProvider") eObj = dataContainer.getObj("entry") entryId = eObj.getValue("id", 0) # asymIdD = self.__commonU.getInstanceEntityMap(dataContainer) asymAuthIdD = self.__commonU.getAsymAuthIdMap(dataContainer) # asymIdRangesD = self.__commonU.getInstancePolymerRanges(dataContainer) # pAuthAsymD = self.__commonU.getPolymerIdMap(dataContainer) instTypeD = self.__commonU.getInstanceTypes(dataContainer) ii = cObj.getRowCount() # --------------- # Add CATH assignments cathU = rP.getResource("CathProvider instance") if rP else None if cathU: # for asymId, authAsymId in asymAuthIdD.items(): if instTypeD[asymId] not in ["polymer", "branched"]: continue entityId = asymIdD[asymId] dL = cathU.getCathResidueRanges(entryId.lower(), authAsymId) logger.debug("%s asymId %s authAsymId %s dL %r", entryId, asymId, authAsymId, dL) vL = cathU.getCathVersions(entryId.lower(), authAsymId) qD = {} for (cathId, domId, _, _, _) in dL: if cathId in qD: continue qD[cathId] = domId cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("CATH", "type", ii) # cObj.setValue(str(cathId), "annotation_id", ii) # cObj.setValue(str(domId), "annotation_id", ii) # cObj.setValue(cathId, "name", ii) cObj.setValue(cathU.getCathName(cathId), "name", ii) # cObj.setValue(";".join(cathU.getNameLineage(cathId)), "annotation_lineage_name", ii) idLinL = cathU.getIdLineage(cathId) cObj.setValue(";".join(idLinL), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue("CATH", "provenance_source", ii) cObj.setValue(vL[0], "assignment_version", ii) # ii += 1 # ------------ # Add SCOP assignments scopU = rP.getResource("ScopProvider instance") if rP else None if scopU: for asymId, authAsymId in asymAuthIdD.items(): if instTypeD[asymId] not in ["polymer", "branched"]: continue entityId = asymIdD[asymId] dL = scopU.getScopResidueRanges(entryId.lower(), authAsymId) version = scopU.getScopVersion() qD = {} for (sunId, domId, _, _, _, _) in dL: if sunId in qD: continue qD[sunId] = domId cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("SCOP", "type", ii) # # cObj.setValue(str(sunId), "domain_id", ii) cObj.setValue(domId, "annotation_id", ii) cObj.setValue(scopU.getScopName(sunId), "name", ii) # tL = [t if t is not None else "" for t in scopU.getNameLineage(sunId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = scopU.getIdLineage(sunId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue("SCOPe", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # JDW - Add SCOP2 family annotation assignments scopU = rP.getResource("Scop2Provider instance") if rP else None if scopU: version = scopU.getVersion() for asymId, authAsymId in asymAuthIdD.items(): # JDW # if instTypeD[asymId] not in ["polymer", "branched"]: if instTypeD[asymId] not in ["polymer"]: continue entityId = asymIdD[asymId] # Family mappings dL = scopU.getFamilyResidueRanges(entryId.upper(), authAsymId) qD = {} for (domId, familyId, _, _, _) in dL: if familyId in qD: continue qD[familyId] = domId cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("SCOP2", "type", ii) # cObj.setValue(domId, "annotation_id", ii) cObj.setValue(scopU.getName(familyId), "name", ii) # tL = [t if t is not None else "" for t in scopU.getNameLineage(familyId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = scopU.getIdLineage(familyId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue("SCOP2", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # ------------ # Add SCOP2 superfamily annotation assignments for asymId, authAsymId in asymAuthIdD.items(): # JDW # if instTypeD[asymId] not in ["polymer", "branched"]: if instTypeD[asymId] not in ["polymer"]: continue entityId = asymIdD[asymId] # Family mappings dL = scopU.getSuperFamilyResidueRanges(entryId.lower(), authAsymId) qD = {} for (domId, superfamilyId, _, _, _) in dL: if superfamilyId in qD: continue qD[superfamilyId] = domId cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("SCOP2", "type", ii) # cObj.setValue(domId, "annotation_id", ii) cObj.setValue(scopU.getName(superfamilyId), "name", ii) # tL = [t if t is not None else "" for t in scopU.getNameLineage(superfamilyId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = scopU.getIdLineage(superfamilyId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue("SCOP2", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # ---- # Add SCOP2B superfamily annotation assignments for asymId, authAsymId in asymAuthIdD.items(): # JDW # if instTypeD[asymId] not in ["polymer", "branched"]: if instTypeD[asymId] not in ["polymer"]: continue entityId = asymIdD[asymId] # Family mappings dL = scopU.getSuperFamilyResidueRanges2B(entryId.lower(), authAsymId) qD = {} for (domId, superfamilyId, _, _, _) in dL: if superfamilyId in qD: qD[superfamilyId] = domId cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("SCOP2", "type", ii) # cObj.setValue(domId, "annotation_id", ii) cObj.setValue(scopU.getName(superfamilyId), "name", ii) # tL = [t if t is not None else "" for t in scopU.getNameLineage(superfamilyId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = scopU.getIdLineage(superfamilyId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue("SCOP2B", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # ------------ # ECOD annotation assignments - ecodU = rP.getResource("EcodProvider instance") if rP else None if ecodU: version = ecodU.getVersion() for asymId, authAsymId in asymAuthIdD.items(): # JDW FIX # if instTypeD[asymId] not in ["polymer", "branched"]: if instTypeD[asymId] not in ["polymer"]: continue entityId = asymIdD[asymId] # Family mappings dL = ecodU.getFamilyResidueRanges(entryId.lower(), authAsymId) qD = {} for (domId, familyId, _, _, _) in dL: if familyId in qD: continue qD[familyId] = domId cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue("ECOD", "type", ii) # fName = ecodU.getName(familyId)[3:] cObj.setValue(domId, "annotation_id", ii) cObj.setValue(fName, "name", ii) # tL = [t if t is not None else "" for t in ecodU.getNameLineage(familyId)] cObj.setValue(";".join(tL), "annotation_lineage_name", ii) idLinL = ecodU.getIdLineage(familyId) cObj.setValue(";".join([str(t) for t in idLinL]), "annotation_lineage_id", ii) cObj.setValue(";".join([str(jj) for jj in range(1, len(idLinL) + 1)]), "annotation_lineage_depth", ii) # cObj.setValue("ECOD", "provenance_source", ii) cObj.setValue(version, "assignment_version", ii) # ii += 1 # ------------ # Add covalent attachment property npbD = self.__commonU.getBoundNonpolymersByInstance(dataContainer) jj = 1 for asymId, rTupL in npbD.items(): for rTup in rTupL: if rTup.connectType in ["covalent bond"]: fType = "HAS_COVALENT_LINKAGE" fId = "COVALENT_LINKAGE_%d" % jj elif rTup.connectType in ["metal coordination"]: fType = "HAS_METAL_COORDINATION_LINKAGE" fId = "METAL_COORDINATION_LINKAGE_%d" % jj else: continue entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue(rTup.targetCompId, "comp_id", ii) cObj.setValue(fId, "annotation_id", ii) cObj.setValue(fType, "type", ii) # # ("targetCompId", "connectType", "partnerCompId", "partnerAsymId", "partnerEntityType", "bondDistance", "bondOrder") cObj.setValue( "%s has %s with %s instance %s in model 1" % (rTup.targetCompId, rTup.connectType, rTup.partnerEntityType, rTup.partnerAsymId), "description", ii, ) cObj.setValue("PDB", "provenance_source", ii) cObj.setValue("V1.0", "assignment_version", ii) # ii += 1 jj += 1 # # Glycosylation features jj = 1 for asymId, rTupL in npbD.items(): if instTypeD[asymId] not in ["polymer"]: continue for rTup in rTupL: if (rTup.connectType in ["covalent bond"]) and (rTup.role is not None) and (rTup.role not in [".", "?"]): fType = rTup.role.upper() + "_SITE" fId = "GLYCOSYLATION_SITE_%d" % jj else: continue entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue(rTup.targetCompId, "comp_id", ii) cObj.setValue(fId, "annotation_id", ii) cObj.setValue(fType, "type", ii) # # ("targetCompId", "connectType", "partnerCompId", "partnerAsymId", "partnerEntityType", "bondDistance", "bondOrder") cObj.setValue( "%s has %s site on %s instance %s in model 1" % (rTup.targetCompId, rTup.role, rTup.partnerEntityType, rTup.partnerAsymId), "description", ii, ) cObj.setValue("PDB", "provenance_source", ii) cObj.setValue("V1.0", "assignment_version", ii) # ii += 1 jj += 1 return True except Exception as e: logger.exception("%s %s failing with %s", dataContainer.getName(), catName, str(e)) return False def buildInstanceValidationScores(self, dataContainer, catName, **kwargs): """Build category rcsb_nonpolymer_instance_validation_score ... Example: loop_ _rcsb_nonpolymer_instance_validation_score.ordinal _rcsb_nonpolymer_instance_validation_score.entry_id _rcsb_nonpolymer_instance_validation_score.entity_id _rcsb_nonpolymer_instance_validation_score.asym_id _rcsb_nonpolymer_instance_validation_score.auth_asym_id _rcsb_nonpolymer_instance_validation_score.comp_id _rcsb_nonpolymer_instance_validation_score.alt_id _rcsb_nonpolymer_instance_validation_score.model_id _rcsb_nonpolymer_instance_validation_score.type _rcsb_nonpolymer_instance_validation_score.mogul_angles_RMSZ _rcsb_nonpolymer_instance_validation_score.mogul_bonds_RMSZ _rcsb_nonpolymer_instance_validation_score.RSR _rcsb_nonpolymer_instance_validation_score.RSCC _rcsb_nonpolymer_instance_validation_score.intermolecular_clashes _rcsb_nonpolymer_instance_validation_score.mogul_bond_outliers _rcsb_nonpolymer_instance_validation_score.mogul_angle_outliers _rcsb_nonpolymer_instance_validation_score.stereo_outliers _rcsb_nonpolymer_instance_validation_score.completeness _rcsb_nonpolymer_instance_validation_score.score_model_fit _rcsb_nonpolymer_instance_validation_score.score_model_geometry _rcsb_nonpolymer_instance_validation_score.ranking_model_fit _rcsb_nonpolymer_instance_validation_score.ranking_model_geometry _rcsb_nonpolymer_instance_validation_score.is_subject_of_investigation _rcsb_nonpolymer_instance_validation_score.is_best_instance 1 6TTM 2 B A PEG A 1 RCSB_LIGAND_QUALITY_SCORE_2021 0.76 0.64 0.154 0.914 0 0 0 0 1.0000 -0.3579 -0.6297 0.5259 0.6292 N N 2 6TTM 2 B A PEG B 1 RCSB_LIGAND_QUALITY_SCORE_2021 0.97 0.68 0.154 0.914 1 0 0 0 1.0000 -0.3579 -0.4587 0.5259 0.5669 N Y 3 6TTM 3 C A HYO . 1 RCSB_LIGAND_QUALITY_SCORE_2021 2.18 4.96 0.108 0.947 0 14 9 0 1.0000 -0.9789 3.1116 0.7676 0.0215 Y Y 4 6TTM 4 D A NI . 1 RCSB_LIGAND_QUALITY_SCORE_2021 ? ? 0.096 0.999 0 0 0 0 1.0000 -1.4779 ? 0.9474 ? N Y 5 6TTM 5 E A OGA . 1 RCSB_LIGAND_QUALITY_SCORE_2021 1.87 3.23 0.104 0.976 0 2 1 0 1.0000 -1.2359 1.7925 0.8690 0.0703 Y Y 6 6TTM 6 F A EDO . 1 RCSB_LIGAND_QUALITY_SCORE_2021 0.32 0.8 0.097 0.941 0 0 0 0 1.0000 -1.0195 -0.8324 0.7842 0.7146 N N 7 6TTM 6 G A EDO . 1 RCSB_LIGAND_QUALITY_SCORE_2021 0.73 0.61 0.252 0.797 0 0 0 0 1.0000 1.3278 -0.6697 0.1356 0.6463 N Y 8 6TTM 7 H A SR . 1 RCSB_LIGAND_QUALITY_SCORE_2021 ? ? 0.143 1.0 0 0 0 0 1.0000 -1.1131 ? 0.8223 ? N Y 9 6TTM 8 I A UNX . 1 RCSB_LIGAND_QUALITY_SCORE_2021 ? ? 0.321 0.94 0 0 0 0 1.0000 0.7640 ? 0.2225 ? N N 10 6TTM 8 J A UNX . 1 RCSB_LIGAND_QUALITY_SCORE_2021 ? ? 0.611 0.922 0 0 0 0 1.0000 3.2028 ? 0.0251 ? N Y # # """ logger.debug("Starting with %s %r %r", dataContainer.getName(), catName, kwargs) startTime = time.time() try: if catName != "rcsb_nonpolymer_instance_validation_score": return False if not dataContainer.exists("entry"): return False if not dataContainer.exists("exptl"): return False # if not self.__rlsP or not self.__niP: return False eObj = dataContainer.getObj("entry") entryId = eObj.getValue("id", 0) # --- xObj = dataContainer.getObj("exptl") methodL = xObj.getAttributeValueList("method") _, expMethod = self.__commonU.filterExperimentalMethod(methodL) # --- # Create the new target category if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) cObj = dataContainer.getObj(catName) ii = cObj.getRowCount() # asymIdD = self.__commonU.getInstanceEntityMap(dataContainer) asymAuthIdD = self.__commonU.getAsymAuthIdMap(dataContainer) # instanceModelValidationD = self.__commonU.getInstanceNonpolymerValidationInfo(dataContainer) # # NonpolymerValidationFields = ("rsr", "rscc", "mogul_bonds_rmsz", "mogul_angles_rmsz") # logger.debug("Length instanceModelValidationD %d", len(instanceModelValidationD)) # ccTargets = self.__commonU.getTargetComponents(dataContainer) # meanD, stdD, loadingD = self.__rlsP.getParameterStatistics() excludeList = self.__rlsP.getLigandExcludeList() rankD = {} scoreD = {} # -- Get existing interactions or calculate on the fly if self.__niP.hasEntry(entryId): ligandAtomCountD = self.__niP.getAtomCounts(entryId) ligandHydrogenAtomCountD = self.__niP.getHydrogenAtomCounts(entryId) intIsBoundD = self.__niP.getLigandNeighborBoundState(entryId) # occupancySumD = self.__niP.getInstanceOccupancySumD(entryId) else: ligandAtomCountD = self.__commonU.getLigandAtomCountD(dataContainer) ligandHydrogenAtomCountD = self.__commonU.getLigandHydrogenAtomCountD(dataContainer) intIsBoundD = self.__commonU.getLigandNeighborBoundState(dataContainer) occupancySumD = self.__commonU.getInstanceOccupancySumD(dataContainer) # logger.info("%r occupancySumD %r", entryId, occupancySumD) # -- # calculate scores and ranks and find best ranking for (modelId, asymId, altId, compId), vTup in instanceModelValidationD.items(): if (asymId not in asymIdD) or (asymId not in asymAuthIdD) or (modelId not in ["1"]): continue isBound = intIsBoundD[asymId] if asymId in intIsBoundD else False numHeavyAtoms = self.__ccP.getAtomCountHeavy(compId) numAtoms = self.__ccP.getAtomCount(compId) numReportedAtoms = 0 numReportedHydrogenAtoms = 0 occupancySum = 0.0 if not numHeavyAtoms: continue try: if altId: numReportedAtoms = ligandAtomCountD[asymId][altId] + (ligandAtomCountD[asymId]["FL"] if "FL" in ligandAtomCountD[asymId] else 0) else: numReportedAtoms = ligandAtomCountD[asymId]["FL"] except Exception as e: logger.warning("Missing ligand atom count for entry %s asymId %s altId %r with %s", entryId, asymId, altId, str(e)) try: if altId: numReportedHydrogenAtoms = ligandHydrogenAtomCountD[asymId][altId] + (ligandHydrogenAtomCountD[asymId]["FL"] if "FL" in ligandHydrogenAtomCountD[asymId] else 0) else: numReportedHydrogenAtoms = ligandHydrogenAtomCountD[asymId]["FL"] except Exception: pass try: if altId: occupancySum = occupancySumD[asymId][altId] + (occupancySumD[asymId]["FL"] if "FL" in occupancySumD[asymId] else 0) else: occupancySum = occupancySumD[asymId]["FL"] except Exception as e: logger.warning("Missing occupancy for entry %s asymId %s altId %r with %s", entryId, asymId, altId, str(e)) # avgHeavyOccupancy = round(occupancySum / float(numHeavyAtoms), 4) completeness = self.__calculateModeledCompleteness( entryId, asymId, compId, altId, isBound, ligandAtomCountD, numReportedAtoms, numReportedHydrogenAtoms, numHeavyAtoms, numAtoms, expMethod ) fitScore, fitRanking, completeness = self.__calculateFitScore(vTup.rsr, vTup.rscc, meanD, stdD, loadingD, completeness) geoScore, geoRanking = self.__calculateGeometryScore(vTup.mogul_bonds_rmsz, vTup.mogul_angles_rmsz, meanD, stdD, loadingD) # rankD[compId] = (max(fitRanking, rankD[compId][0]), asymId, altId) if compId in rankD else (fitRanking, asymId, altId) scoreD[(modelId, asymId, altId, compId)] = (fitScore, fitRanking, geoScore, geoRanking, numReportedAtoms, completeness, avgHeavyOccupancy) # for (modelId, asymId, altId, compId), vTup in instanceModelValidationD.items(): if (modelId, asymId, altId, compId) not in scoreD: continue # entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] # cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(modelId, "model_id", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue(altId if altId else ".", "alt_id", ii) cObj.setValue(compId, "comp_id", ii) cObj.setValue("RCSB_LIGAND_QUALITY_SCORE_2021", "type", ii) # cObj.setValue(vTup.rsr, "RSR", ii) cObj.setValue(vTup.rscc, "RSCC", ii) cObj.setValue(vTup.mogul_angles_rmsz, "mogul_angles_RMSZ", ii) cObj.setValue(vTup.mogul_bonds_rmsz, "mogul_bonds_RMSZ", ii) # cObj.setValue(vTup.mogul_bond_outliers, "mogul_bond_outliers", ii) cObj.setValue(vTup.mogul_angle_outliers, "mogul_angle_outliers", ii) cObj.setValue(vTup.stereo_outliers, "stereo_outliers", ii) # sTup = scoreD[(modelId, asymId, altId, compId)] cObj.setValue(vTup.intermolecular_clashes if vTup.intermolecular_clashes else 0, "intermolecular_clashes", ii) # cObj.setValue("%.4f" % sTup[6], "average_occupancy", ii) cObj.setValue("%.4f" % sTup[5], "completeness", ii) cObj.setValue("%.4f" % sTup[0] if sTup[0] else None, "score_model_fit", ii) cObj.setValue("%.4f" % sTup[1] if sTup[1] else None, "ranking_model_fit", ii) cObj.setValue("%.4f" % sTup[2] if sTup[2] else None, "score_model_geometry", ii) cObj.setValue("%.4f" % sTup[3] if sTup[3] else None, "ranking_model_geometry", ii) isBest = "Y" if (rankD[compId][1] == asymId and rankD[compId][2] == altId) else "N" cObj.setValue(isBest, "is_best_instance", ii) # isTarget = "N" isTargetProv = None if compId in ccTargets: isTarget = "Y" isTargetProv = "Author" elif compId in excludeList: isTarget = "N" elif self.__ccP.getFormulaWeight(compId) and self.__ccP.getFormulaWeight(compId) > 150.0: isTarget = "Y" isTargetProv = "RCSB" cObj.setValue(isTarget, "is_subject_of_investigation", ii) if isTarget == "Y": cObj.setValue(isTargetProv, "is_subject_of_investigation_provenance", ii) # ii += 1 # endTime = time.time() logger.debug("Completed at %s (%.4f seconds)", time.strftime("%Y %m %d %H:%M:%S", time.localtime()), endTime - startTime) return True except Exception as e: logger.exception("For %s %r failing with %s", dataContainer.getName(), catName, str(e)) return False def __calculateModeledCompleteness(self, entryId, asymId, compId, altId, isBound, ligandAtomCountD, numReportedAtoms, numReportedHydrogenAtoms, numHeavyAtoms, numAtoms, expMethod): # Ignore a single missing leaving atom if we are bound # Always ignore hydrogens for X-ray methods numReportedHeavyAtoms = numReportedAtoms - numReportedHydrogenAtoms if numReportedAtoms > numHeavyAtoms and expMethod != "X-ray": # Has hydrogens completeness = 1.0 if isBound and (numAtoms - numReportedAtoms) == 1 else (float(numReportedAtoms) / float(numAtoms)) else: completeness = 1.0 if isBound and (numHeavyAtoms - numReportedHeavyAtoms) == 1 else (float(numReportedHeavyAtoms) / float(numHeavyAtoms)) # if completeness > 1.2: logger.debug("%s %s ligandAtomCountD %r", entryId, asymId, ligandAtomCountD[asymId]) logger.debug( "%s asymId %s compId %s altId %r numHeavyAtoms %d numAtoms %d reported %.3f completeness %0.3f", entryId, asymId, compId, altId, numHeavyAtoms, numAtoms, numReportedAtoms, completeness, ) # if completeness > 1.0: completeness = 1.0 # return completeness def __calculateFitScore(self, rsr, rscc, meanD, stdD, loadingD, completeness): fitScore = None fitRanking = 0.0 try: if rsr and rscc: if completeness < 1.0: rsr = rsr + 0.08235 * (1.0 - completeness) rscc = rscc - 0.09652 * (1.0 - completeness) fitScore = ((rsr - meanD["rsr"]) / stdD["rsr"]) * loadingD["rsr"] + ((rscc - meanD["rscc"]) / stdD["rscc"]) * loadingD["rscc"] fitRanking = self.__rlsP.getFitScoreRanking(fitScore) except Exception as e: logger.exception("Failing for rsr %r rscc %r with %s", rsr, rscc, str(e)) return fitScore, fitRanking, completeness def __calculateGeometryScore(self, bondsRmsZ, anglesRmsZ, meanD, stdD, loadingD): geoScore = None geoRanking = 0.0 try: if bondsRmsZ and anglesRmsZ: geoScore = ((bondsRmsZ - meanD["mogul_bonds_rmsz"]) / stdD["mogul_bonds_rmsz"]) * loadingD["mogul_bonds_rmsz"] + ( (anglesRmsZ - meanD["mogul_angles_rmsz"]) / stdD["mogul_angles_rmsz"] ) * loadingD["mogul_angles_rmsz"] geoRanking = self.__rlsP.getGeometryScoreRanking(geoScore) except Exception as e: logger.exception("Failing for bondsRmsZ %r anglesRmsZ %r with %r", bondsRmsZ, anglesRmsZ, str(e)) return geoScore, geoRanking def buildInstanceTargetNeighbors(self, dataContainer, catName, **kwargs): """Build category rcsb_target_neighbors ... Example: """ logger.debug("Starting with %s %r %r", dataContainer.getName(), catName, kwargs) startTime = time.time() try: if catName != "rcsb_target_neighbors": return False if not dataContainer.exists("entry"): return False # eObj = dataContainer.getObj("entry") entryId = eObj.getValue("id", 0) # # Create the new target category if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) cObj = dataContainer.getObj(catName) ii = cObj.getRowCount() # asymIdD = self.__commonU.getInstanceEntityMap(dataContainer) asymAuthIdD = self.__commonU.getAsymAuthIdMap(dataContainer) # -- Get existing interactions or calculate on the fly if self.__niP.hasEntry(entryId): ligandIndexD = self.__niP.getLigandNeighborIndex(entryId) nearestNeighborL = self.__niP.getNearestNeighborList(entryId) else: ligandIndexD = self.__commonU.getLigandNeighborIndex(dataContainer) nearestNeighborL = self.__commonU.getNearestNeighborList(dataContainer) # logger.debug("%s (%d) ligandIndexD %r", entryId, len(nearestNeighborL), ligandIndexD) # for asymId, nD in ligandIndexD.items(): for (partnerAsymId, partnerAuthSeqId), nIndex in nD.items(): logger.debug("%s pAsym %r pAuthSeqId %r nIndex %d", entryId, partnerAsymId, partnerAuthSeqId, nIndex) # neighbor = nearestNeighborL[nIndex] # neighbor = intNeighborD[asymId][(partnerEntityId, partnerAsymId, pConnectType)][0] # entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] # cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(neighbor.ligandModelId, "model_id", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) # cObj.setValue(neighbor.ligandAtomId, "atom_id", ii) cObj.setValue(neighbor.ligandAltId if neighbor.ligandAltId and neighbor.ligandAltId not in ["?"] else ".", "alt_id", ii) cObj.setValue(neighbor.ligandCompId, "comp_id", ii) # cObj.setValue(neighbor.partnerModelId, "target_model_id", ii) cObj.setValue(neighbor.partnerEntityId, "target_entity_id", ii) cObj.setValue(neighbor.partnerAsymId, "target_asym_id", ii) cObj.setValue(neighbor.partnerCompId, "target_comp_id", ii) cObj.setValue(neighbor.partnerSeqId, "target_seq_id", ii) cObj.setValue(neighbor.partnerAuthSeqId, "target_auth_seq_id", ii) cObj.setValue(neighbor.partnerAtomId, "target_atom_id", ii) cObj.setValue("N" if neighbor.connectType == "non-bonded" else "Y", "target_is_bound", ii) cObj.setValue("%.3f" % neighbor.distance, "distance", ii) # ---- ii += 1 # endTime = time.time() logger.debug("Completed at %s (%.4f seconds)", time.strftime("%Y %m %d %H:%M:%S", time.localtime()), endTime - startTime) return True except Exception as e: logger.exception("For %s %r failing with %s", dataContainer.getName(), catName, str(e)) return False def buildInstanceLigandNeighbors(self, dataContainer, catName, **kwargs): """Build category rcsb_target_neighbors ... Example: """ logger.debug("Starting with %s %r %r", dataContainer.getName(), catName, kwargs) startTime = time.time() try: if catName != "rcsb_ligand_neighbors": return False if not dataContainer.exists("entry"): return False # eObj = dataContainer.getObj("entry") entryId = eObj.getValue("id", 0) # # Create the new target category if not dataContainer.exists(catName): dataContainer.append(DataCategory(catName, attributeNameList=self.__dApi.getAttributeNameList(catName))) cObj = dataContainer.getObj(catName) ii = cObj.getRowCount() # asymIdD = self.__commonU.getInstanceEntityMap(dataContainer) asymAuthIdD = self.__commonU.getAsymAuthIdMap(dataContainer) # -- Get existing interactions or calculate on the fly # if self.__niP.hasEntry(entryId): targetIndexD = self.__niP.getTargetNeighborIndex(entryId) nearestNeighborL = self.__niP.getNearestNeighborList(entryId) else: targetIndexD = self.__commonU.getTargetNeighborIndex(dataContainer) nearestNeighborL = self.__commonU.getNearestNeighborList(dataContainer) # logger.debug("%s (%d) targetIndexD %r", entryId, len(nearestNeighborL), targetIndexD) # for (asymId, authSeqId), nD in targetIndexD.items(): for ligandAsymId, nIndex in nD.items(): logger.debug("%s asymId %s authSeqId %s ligandAsym %rnIndex %d", entryId, asymId, authSeqId, ligandAsymId, nIndex) # neighbor = nearestNeighborL[nIndex] # entityId = asymIdD[asymId] authAsymId = asymAuthIdD[asymId] # cObj.setValue(ii + 1, "ordinal", ii) cObj.setValue(neighbor.ligandModelId, "model_id", ii) cObj.setValue(entryId, "entry_id", ii) cObj.setValue(entityId, "entity_id", ii) cObj.setValue(asymId, "asym_id", ii) cObj.setValue(authAsymId, "auth_asym_id", ii) cObj.setValue(neighbor.partnerCompId, "comp_id", ii) # cObj.setValue(neighbor.partnerSeqId, "seq_id", ii) cObj.setValue(neighbor.partnerAuthSeqId, "auth_seq_id", ii) cObj.setValue(neighbor.partnerAtomId, "atom_id", ii) cObj.setValue(neighbor.partnerAltId if neighbor.partnerAltId and neighbor.partnerAltId not in ["?"] else ".", "alt_id", ii) # cObj.setValue(neighbor.ligandModelId, "ligand_model_id", ii) cObj.setValue(asymIdD[neighbor.ligandAsymId], "ligand_entity_id", ii) cObj.setValue(neighbor.ligandAsymId, "ligand_asym_id", ii) cObj.setValue(neighbor.ligandCompId, "ligand_comp_id", ii) cObj.setValue(neighbor.ligandAtomId, "ligand_atom_id", ii) cObj.setValue(neighbor.ligandAltId, "ligand_alt_id", ii) cObj.setValue(neighbor.ligandAltId if neighbor.ligandAltId and neighbor.ligandAltId not in ["?"] else ".", "ligand_alt_id", ii) cObj.setValue("N" if neighbor.connectType == "non-bonded" else "Y", "ligand_is_bound", ii) cObj.setValue("%.3f" % neighbor.distance, "distance", ii) # ---- ii += 1 # endTime = time.time() logger.debug("Completed at %s (%.4f seconds)", time.strftime("%Y %m %d %H:%M:%S", time.localtime()), endTime - startTime) return True except Exception as e: logger.exception("For %s %r failing with %s", dataContainer.getName(), catName, str(e)) return False
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9e246f8197a11b73a278225e329244b30642e5a1
196
py
Python
ch04/return.none.py
kxen42/Learn-Python-Programming-Third-Edition
851ddc5e6094fadd44f31a9ad1d3876456b04372
[ "MIT" ]
19
2021-11-05T22:54:09.000Z
2022-03-29T15:03:47.000Z
ch04/return.none.py
kxen42/Learn-Python-Programming-Third-Edition
851ddc5e6094fadd44f31a9ad1d3876456b04372
[ "MIT" ]
null
null
null
ch04/return.none.py
kxen42/Learn-Python-Programming-Third-Edition
851ddc5e6094fadd44f31a9ad1d3876456b04372
[ "MIT" ]
26
2021-11-12T17:04:50.000Z
2022-03-29T01:10:35.000Z
# return.none.py def func(): pass func() # the return of this call won't be collected. It's lost. a = func() # the return of this one instead is collected into `a` print(a) # prints: None
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f508880d35de4e5c61d56d0000d4001cccea0293
163
py
Python
server/controllers/main.py
eruixma/trading-app
3db3bbd27fdc405b9ecb41d9e68330899a3dcc6a
[ "BSD-2-Clause" ]
2
2019-03-27T04:46:29.000Z
2019-10-10T13:03:24.000Z
server/controllers/main.py
eruixma/trading-app
3db3bbd27fdc405b9ecb41d9e68330899a3dcc6a
[ "BSD-2-Clause" ]
1
2021-06-01T23:31:21.000Z
2021-06-01T23:31:21.000Z
server/controllers/main.py
eruixma/trading-app
3db3bbd27fdc405b9ecb41d9e68330899a3dcc6a
[ "BSD-2-Clause" ]
1
2021-08-19T03:09:05.000Z
2021-08-19T03:09:05.000Z
from flask import Blueprint, current_app main = Blueprint('main', __name__) @main.route('/') def home(): return current_app.send_static_file('index.html')
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f523394a40a39dc77c57c643a75603c33eb11af0
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py
Python
lib/models/backbones/efficientdet/__init__.py
shachargluska/centerpose
01c2c8bfa9d3ee91807f2ffdcc48728d104265bd
[ "MIT" ]
245
2019-11-29T02:55:25.000Z
2022-03-30T07:30:18.000Z
lib/models/backbones/efficientdet/__init__.py
shachargluska/centerpose
01c2c8bfa9d3ee91807f2ffdcc48728d104265bd
[ "MIT" ]
24
2019-11-29T10:05:00.000Z
2022-03-30T07:16:06.000Z
lib/models/backbones/efficientdet/__init__.py
FishLiuabc/centerpose
555d753cd82693476f91f78c53aa4147f5a83015
[ "MIT" ]
45
2019-11-29T05:12:02.000Z
2022-03-21T02:20:36.000Z
from .efficientdet import EfficientDet def get_efficientdet(num_layers, cfg): model = EfficientDet(intermediate_channels=cfg.MODEL.INTERMEDIATE_CHANNEL) return model
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f52fef7331b7922effcc0ce7dc2004ff0e5e1b57
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py
Python
src/pygame_utils/sprite/gamecomponent.py
MarronEyes/pygame_utils
27a1f1328533d04c20ccb95208d44fda3be81a09
[ "MIT" ]
null
null
null
src/pygame_utils/sprite/gamecomponent.py
MarronEyes/pygame_utils
27a1f1328533d04c20ccb95208d44fda3be81a09
[ "MIT" ]
null
null
null
src/pygame_utils/sprite/gamecomponent.py
MarronEyes/pygame_utils
27a1f1328533d04c20ccb95208d44fda3be81a09
[ "MIT" ]
null
null
null
import pygame from graphics.component import Component class GameComponent(Component): def __init__(self) -> None: super().__init__()
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14,376
py
Python
dttpy/dttdata.py
neouniverse/dttpy
c5ff8870d796d84b39c4e6f82ec4eefe523cc3e7
[ "MIT" ]
null
null
null
dttpy/dttdata.py
neouniverse/dttpy
c5ff8870d796d84b39c4e6f82ec4eefe523cc3e7
[ "MIT" ]
null
null
null
dttpy/dttdata.py
neouniverse/dttpy
c5ff8870d796d84b39c4e6f82ec4eefe523cc3e7
[ "MIT" ]
null
null
null
# #! coding:utf-8 import xml.etree.ElementTree as ET from xml.etree import ElementTree import base64 import binascii import numpy as np import matplotlib.pyplot as plt from collections import OrderedDict SubType = {'1':'ASD','2':'CSD','3':'TF','4':'???','5':'COH'} average_type = {'0':'Fixed','1':'Exponential','2':'Accumulative'} # not comfirmed window_type = {'0':'Uniform','1':'Hanning','2':'Flat-top', '3':'Welch','4':'Bartlet','5':'BMH'} # not comfirmed class DttXMLSpectrum(): def __init__(self,child): self.Name = child.attrib["Name"] self._getAttribute(child) self._getStream(child) def _getAttribute(self,child): self.dt = child.find("./Param[@Name='dt']").text self.t0 = child.find("./Time[@Type='GPS']").text self.BW = child.find("./Param[@Name='BW']").text self.f0 = child.find("./Param[@Name='f0']").text self.df = child.find("./Param[@Name='df']").text self.N = int(child.find("./Param[@Name='N']").text) self.Window = child.find("./Param[@Name='Window']").text self.AveType = child.find("./Param[@Name='AverageType']").text self.Averages = child.find("./Param[@Name='Averages']").text self.Flag = child.find("./Param[@Name='Flag']").text self.Subtype = SubType[child.find("./Param[@Name='Subtype']").text] self.M = int(child.find("./Param[@Name='M']").text) self.dim = child.find('./Array/Dim').text channel = child.findall("./Param[@Unit='channel']") self.Channel = list(map(lambda x:{x.attrib['Name']:x.text},channel)) Channel = OrderedDict(self.Channel[0]) for c in self.Channel: Channel.update(OrderedDict(c)) self.Channel = Channel def showInfo(self): fmt = 'dt [s]\t:{dt:2.10f}\n'+\ 't0(GPS)\t:{t0:10.1f}\n'+\ 'BW [Hz]\t:{bw:2.10f} \n'+\ 'f0 [Hz]\t:{f0:2.10f} \n'+\ 'df [Hz]\t:{df:2.10f} \n'+\ 'average\t:{average:12d} \n'+\ 'Points\t:{n:12d} \n'+\ 'window\t:{window:12s} \n'+\ 'type\t:{aveType:12s}\n'+\ 'flag\t:{flag:12s}' text = fmt.format(dt=float(self.dt), t0=float(self.t0), bw=float(self.BW), f0=float(self.f0), df=float(self.df), n=int(self.N), window=self.Window, aveType=self.AveType, average=int(self.Averages), flag=self.Flag ) print(text) def _getStream(self,child): stream_str = child.find('./Array/Stream').text stream_bin = binascii.a2b_base64(stream_str) if self.Subtype == 'ASD': # float : asd self.spectrum = np.frombuffer(stream_bin, dtype=np.float32) self.f = np.arange(len(self.spectrum))*float(self.df) elif self.Subtype == 'CSD': # floatcomplex : cross spectrum self.spectrum = np.frombuffer(stream_bin, dtype=np.float32) real = self.spectrum[0::2] real = real.reshape(self.M,self.N) imag = self.spectrum[1::2] imag = imag.reshape(self.M,self.N) imag = 1j*imag c = real+imag #print c[0,:5] # Cxy # x:ChannelA # y:ChannelB[0-] self.csd = np.absolute(c) self.deg = np.rad2deg(np.angle(c)) self.f = np.arange(len(self.csd[0]))*float(self.df) elif self.Subtype == '???': # float : coherence? self.spectrum = np.frombuffer(stream_bin, dtype=np.float32) self.f = np.arange(len(self.spectrum))*float(self.df) #print len(self.spectrum),len(self.f) class DttXMLTransferFunction(): def __init__(self,child): self.Name = child.attrib["Name"] self._getAttribute(child) self._getStream(child) def _getAttribute(self,child): #self.dt = child.find("./Param[@Name='dt']").text #self.t0 = child.find("./Time[@Type='GPS']").text self.BW = child.find("./Param[@Name='BW']").text self.f0 = child.find("./Param[@Name='f0']").text self.df = child.find("./Param[@Name='df']").text self.N = int(child.find("./Param[@Name='N']").text) self.Window = child.find("./Param[@Name='Window']").text self.AveType = child.find("./Param[@Name='AverageType']").text self.Averages = child.find("./Param[@Name='Averages']").text self.Flag = child.find("./Param[@Name='Flag']").text self.Subtype = SubType[child.find("./Param[@Name='Subtype']").text] self.M = int(child.find("./Param[@Name='M']").text) self.dim = child.find('./Array/Dim').text channel = child.findall("./Param[@Unit='channel']") self.Channel = list(map(lambda x:{x.attrib['Name']:x.text},channel)) Channel = OrderedDict(self.Channel[0]) for c in self.Channel: Channel.update(OrderedDict(c)) self.Channel = Channel def showInfo(self): fmt = 'dt [s]\t:{dt:2.10f}\n'+\ 't0(GPS)\t:{t0:10.1f}\n'+\ 'BW [Hz]\t:{bw:2.10f} \n'+\ 'f0 [Hz]\t:{f0:2.10f} \n'+\ 'df [Hz]\t:{df:2.10f} \n'+\ 'average\t:{average:12d} \n'+\ 'Points\t:{n:12d} \n'+\ 'window\t:{window:12s} \n'+\ 'type\t:{aveType:12s}\n'+\ 'flag\t:{flag:12s}' text = fmt.format(dt=float(self.dt), t0=float(self.t0), bw=float(self.BW), f0=float(self.f0), df=float(self.df), n=int(self.N), window=self.Window, aveType=self.AveType, average=int(self.Averages), flag=self.Flag ) print(text) def _getStream(self,child): stream_str = child.find('./Array/Stream').text stream_bin = binascii.a2b_base64(stream_str) #print(stream_bin) #print(self.Subtype) # if self.Subtype == 'ASD': # float : asd self.spectrum = np.frombuffer(stream_bin, dtype=np.float32) #self.f = np.arange(len(self.spectrum))*float(self.df) elif self.Subtype == 'CSD': # floatcomplex : cross spectrum self.spectrum = np.frombuffer(stream_bin, dtype=np.float32) real = self.spectrum[0::2] real = real.reshape(self.M,self.N) imag = self.spectrum[1::2] imag = imag.reshape(self.M,self.N) imag = 1j*imag c = real+imag #print c[0,:5] # Cxy # x:ChannelA # y:ChannelB[0-] self.csd = np.absolute(c) self.deg = np.rad2deg(np.angle(c)) #self.f = np.arange(len(self.csd[0]))*float(self.df) elif self.Subtype == 'TF': self.spectrum = np.frombuffer(stream_bin, dtype=np.float32) real = self.spectrum[0::2] real = real.reshape(self.M+1,self.N) imag = self.spectrum[1::2] imag = imag.reshape(self.M+1,self.N) imag = 1j*imag c = real+imag self.mag = np.absolute(c) self.deg = np.rad2deg(np.angle(c)) #print('mag',self.mag) #print('deg',self.deg) #self.f = np.arange(len(self.mag[0]))*float(self.df) #print('###',self.f,self.df) #exit() elif self.Subtype == 'COH': self.spectrum = np.frombuffer(stream_bin, dtype=np.float32) self.spectrum = self.spectrum.reshape(self.M+1,self.N) self.mag = self.spectrum else: raise ValueError('!') class DttXMLTestParameter(): def __init__(self,child): self.Name = child.attrib["Name"] self._getAttribute(child) def _getAttribute(self,child): #self.dt = child.find("./Param[@Name='dt']").text #self.t0 = child.find("./Time[@Type='GPS']").text self.sp = child.find("./Param[@Name='SweepPoints']").text #print(self.sp) self.sp = list(map(float,self.sp.split()))[0::2] class DttData(): def __init__(self,xmlname): ''' ''' tree = ElementTree.parse(xmlname) root = tree.getroot() self.spect = [DttXMLSpectrum(child) for child in \ root.findall("./LIGO_LW[@Type='Spectrum']")] if not self.spect: self.tfmode = True self.spect = [DttXMLTransferFunction(child) for child in \ root.findall("./LIGO_LW[@Type='TransferFunction']")] huge = root.findall("./LIGO_LW[@Type='TestParameter']") hoge = DttXMLTestParameter(huge[0]) self.f = hoge.sp def getAllSpectrumName(self): ''' ''' for s in self.spect: print(s.Name,s.Subtype,s.Channel['ChannelA']) def getASDInfo(self,chname,ref=False): ''' ''' asd = filter(lambda x:x.Subtype=="ASD", self.spect) asd = filter(lambda x:x.Channel['ChannelA']==chname, asd) asd = list(asd) if len(asd)==1: asd = asd[0] else: raise ValueError('Error!') asd.showInfo() def getASD(self,chname,ref=False): ''' ''' asdlist = filter(lambda x:x.Subtype=="ASD", self.spect) asdlist = filter(lambda x:x.Channel['ChannelA']==chname, asdlist) asdlist = list(asdlist) if len(asdlist)==0: raise ValueError('No ASD with : {0}'.format(chname)) for asd in asdlist: print(asd.Name,asd.Subtype) if ref==False: if 'Result' in asd.Name: return asd.f,asd.spectrum else: raise ValueError('No name') elif ref==True: if 'Reference' in asd.Name: return asd.f,asd.spectrum else: raise ValueError('No reference') else: print('!') return None print('!') def getResultNum(self,chname,ref=False): ''' ''' asd = list(filter(lambda x:x.Subtype=="ASD", self.spect)) asd = list(filter(lambda x:x.Channel['ChannelA']==chname, asd)) num = asd[0].Name return int(num.split('[')[1][0]) def getCSD(self,chnameA,chnameB,ref=False,**kwargs): ''' ''' import re csd = list(filter(lambda x:x.Subtype=="CSD", self.spect)) csd = list(filter(lambda x:x.Channel['ChannelA']==chnameA, csd)) if not ref: csd = list(filter(lambda x: 'Reference' not in x.Name , csd)) numA = self.getResultNum(chnameA,**kwargs) for c in csd[0].Channel.keys(): if csd[0].Channel[c] == chnameB: num = int(c[:-1].split('[')[1]) if num >= numA: num = num -1 elif num < numA: num = num #print numA,num,csd[0].Channel[c] return csd[0].f,csd[0].csd[num],csd[0].deg[num] def getCoherence(self,chnameA,chnameB,ref=False): ''' ''' if not self.tfmode: freq = None freq,CSD_AB,deg = self.getCSD(chnameA,chnameB) freq,ASD_A = self.getASD(chnameA) freq,ASD_B = self.getASD(chnameB) mag = (CSD_AB/(ASD_A*ASD_B))**2 else: import re csd = list(filter(lambda x:x.Subtype=="COH", self.spect)) csd = list(filter(lambda x:x.Channel['ChannelA']==chnameA, csd)) if not ref: csd = list(filter(lambda x: 'Reference' not in x.Name , csd)) else: csd = list(filter(lambda x: 'Reference' in x.Name , csd)) if len(csd)==1: csd = csd[0] else: raise ValueError('!') chnames = list(csd.Channel.values()) label = list(csd.Channel.keys()) print(chnameA,chnames) num = chnames.index(chnameB) if ref: freq = csd.mag[0] else: freq = self.f mag = csd.mag[num] return freq,mag def getTF(self,chnameA,chnameB,ref=False,db=True): ''' ''' if not self.tfmode: f = None f,CSD_AB,deg = self.getCSD(chnameA,chnameB) f,ASD_A = self.getASD(chnameA) f,ASD_B = self.getASD(chnameB) mag = CSD_AB/(ASD_B*ASD_B) return f,mag,deg else: import re csd = list(filter(lambda x:x.Subtype=="TF", self.spect)) csd = list(filter(lambda x:x.Channel['ChannelA']==chnameA, csd)) if not ref: csd = list(filter(lambda x: 'Reference' not in x.Name , csd)) else: csd = list(filter(lambda x: 'Reference' in x.Name , csd)) if len(csd)==1: csd = csd[0] else: raise ValueError('!') chnames = list(csd.Channel.values()) label = list(csd.Channel.keys()) print(chnameA,chnames) num = chnames.index(chnameB) if ref: freq = csd.mag[0] else: freq = self.f mag = csd.mag[num] deg = csd.deg[num] if db: mag = 20*np.log10(mag) return freq,mag,deg
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4
f570cddcfd6909cf11435d43423d70ccb8d64b16
133
py
Python
WEEKS/wk17/CodeSignal-Solutions/Core_007_-_lateRide.py
webdevhub42/Lambda
b04b84fb5b82fe7c8b12680149e25ae0d27a0960
[ "MIT" ]
null
null
null
WEEKS/wk17/CodeSignal-Solutions/Core_007_-_lateRide.py
webdevhub42/Lambda
b04b84fb5b82fe7c8b12680149e25ae0d27a0960
[ "MIT" ]
null
null
null
WEEKS/wk17/CodeSignal-Solutions/Core_007_-_lateRide.py
webdevhub42/Lambda
b04b84fb5b82fe7c8b12680149e25ae0d27a0960
[ "MIT" ]
null
null
null
def lateRide(n): hours = n // 60 minutes = n % 60 return (hours // 10) + (hours % 10) + (minutes // 10) + (minutes % 10)
26.6
74
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4
f57f22bf388fb4aa2a7b99663c5c1b62f0a9da4f
108
py
Python
getpaid/rest_framework/apps.py
wuuuduu/django-getpaid
d864de53bc947e2d1ab4f2d3879a803cab1216d3
[ "MIT" ]
6
2020-05-26T08:49:10.000Z
2022-01-03T17:44:19.000Z
getpaid/rest_framework/apps.py
wuuuduu/django-getpaid
d864de53bc947e2d1ab4f2d3879a803cab1216d3
[ "MIT" ]
null
null
null
getpaid/rest_framework/apps.py
wuuuduu/django-getpaid
d864de53bc947e2d1ab4f2d3879a803cab1216d3
[ "MIT" ]
1
2021-08-23T06:59:05.000Z
2021-08-23T06:59:05.000Z
from django.apps import AppConfig class GetpaidRestConfig(AppConfig): name = "getpaid_rest_framework"
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4
f58a63fcbad7aec0c720d44005782e265c314a57
17
py
Python
inventoryanalytics/simulation/deterministic/__init__.py
vishalbelsare/inventoryanalytics
85feff8f1abaf2c29414e066eed096ac3a74973b
[ "MIT" ]
7
2018-06-17T02:45:33.000Z
2021-06-11T09:13:06.000Z
inventoryanalytics/simulation/deterministic/__init__.py
vishalbelsare/inventoryanalytics
85feff8f1abaf2c29414e066eed096ac3a74973b
[ "MIT" ]
1
2021-02-07T03:33:22.000Z
2021-06-02T21:11:59.000Z
inventoryanalytics/simulation/deterministic/__init__.py
vishalbelsare/inventoryanalytics
85feff8f1abaf2c29414e066eed096ac3a74973b
[ "MIT" ]
7
2018-07-14T19:45:43.000Z
2021-10-12T09:45:04.000Z
__all__ = ["des"]
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f59759138fa73fcc525ff95be2e388e6c99396f6
530
py
Python
app/models/user.py
johnshumon/fastapi-boilerplate
f0cb31e74ab773b8ce044149b17ce24c2e7fa4fc
[ "MIT" ]
null
null
null
app/models/user.py
johnshumon/fastapi-boilerplate
f0cb31e74ab773b8ce044149b17ce24c2e7fa4fc
[ "MIT" ]
null
null
null
app/models/user.py
johnshumon/fastapi-boilerplate
f0cb31e74ab773b8ce044149b17ce24c2e7fa4fc
[ "MIT" ]
null
null
null
""" User models module """ from sqlalchemy import Column, Integer, String from app.models import Base class User(Base): """User class""" id: int = Column(Integer, primary_key=True, index=True) firstname: str = Column(String(50), nullable=False, index=True) lastname: str = Column(String(50), nullable=False, index=True) email: str = Column(String(100), nullable=False) username: str = Column(String(50), nullable=False, unique=True, index=True) password: str = Column(String(100), nullable=False)
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0
4
f5987f75714e27b31f8445c59b2b8df50b29383c
782
py
Python
oops_fhir/r4/value_set/parent_relationship_codes.py
Mikuana/oops_fhir
77963315d123756b7d21ae881f433778096a1d25
[ "MIT" ]
null
null
null
oops_fhir/r4/value_set/parent_relationship_codes.py
Mikuana/oops_fhir
77963315d123756b7d21ae881f433778096a1d25
[ "MIT" ]
null
null
null
oops_fhir/r4/value_set/parent_relationship_codes.py
Mikuana/oops_fhir
77963315d123756b7d21ae881f433778096a1d25
[ "MIT" ]
null
null
null
from pathlib import Path from fhir.resources.valueset import ValueSet as _ValueSet from oops_fhir.utils import ValueSet from oops_fhir.r4.code_system.v3_role_code import v3RoleCode __all__ = ["ParentRelationshipCodes"] _resource = _ValueSet.parse_file(Path(__file__).with_suffix(".json")) class ParentRelationshipCodes(ValueSet): """ Parent Relationship Codes The value set includes the v3 RoleCode PRN (parent), TWIN (twin) and all of their specializations. It covers the relationships needed to establish genetic pedigree relationships between family members. Status: draft - Version: 4.0.1 http://hl7.org/fhir/ValueSet/parent-relationship-codes """ # TODO: fix this template issue1 pass class Meta: resource = _resource
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782
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1
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4
194c38c24bff2dd1b26d3bd458a2d3f23f28316b
121
py
Python
controle_de_estoque/app.py
rodrigo-labs/controle_estoque
890acefef2c3dace68723d086a0d40f27ff20476
[ "MIT" ]
6
2020-09-20T21:38:47.000Z
2021-11-15T10:45:02.000Z
controle_de_estoque/app.py
rodrigo-labs/controle_estoque
890acefef2c3dace68723d086a0d40f27ff20476
[ "MIT" ]
null
null
null
controle_de_estoque/app.py
rodrigo-labs/controle_estoque
890acefef2c3dace68723d086a0d40f27ff20476
[ "MIT" ]
6
2019-06-27T18:15:51.000Z
2022-02-17T19:31:59.000Z
from controle_de_estoque.controllers import controllers if __name__ == "__main__": controllers.principal_controle()
24.2
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